0s autopkgtest [17:48:48]: starting date and time: 2025-03-15 17:48:48+0000
  0s autopkgtest [17:48:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:48:48]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pqcdt4ad/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-snpstats --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-8.secgroup --name adt-plucky-s390x-r-bioc-snpstats-20250315-174847-juju-7f2275-prod-proposed-migration-environment-15-2929b3f1-f3c5-4b11-9247-c11c6d4f9008 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 77s autopkgtest [17:50:05]: testbed dpkg architecture: s390x
 77s autopkgtest [17:50:05]: testbed apt version: 2.9.33
 78s autopkgtest [17:50:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 78s autopkgtest [17:50:06]: testbed release detected to be: None
 79s autopkgtest [17:50:07]: updating testbed package index (apt update)
 79s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 79s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 79s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 79s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 79s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
 80s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
 80s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
 80s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
 80s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
 80s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
 80s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
 80s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
 80s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
 80s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
 80s Fetched 1073 kB in 1s (1080 kB/s)
 81s Reading package lists...
 81s + lsb_release --codename --short
 81s + RELEASE=plucky
 81s + cat
 81s + [ plucky != trusty ]
 81s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
 81s Reading package lists...
 81s Building dependency tree...
 81s Reading state information...
 81s Calculating upgrade...
 82s Calculating upgrade...
 82s The following packages were automatically installed and are no longer required:
 82s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
 82s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
 82s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
 82s   linux-tools-6.11.0-8-generic
 82s Use 'sudo apt autoremove' to remove them.
 82s The following packages will be upgraded:
 82s   pinentry-curses python3-jinja2 strace
 82s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 82s Need to get 652 kB of archives.
 82s After this operation, 27.6 kB of additional disk space will be used.
 82s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
 82s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
 82s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 83s Fetched 652 kB in 1s (928 kB/s)
 83s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
 83s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
 83s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
 83s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
 83s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
 83s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
 83s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
 83s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
 83s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
 83s Setting up strace (6.13+ds-1ubuntu1) ...
 83s Processing triggers for man-db (2.13.0-1) ...
 84s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
 84s + /usr/lib/apt/apt-helper analyze-pattern ?true
 84s + uname -r
 84s + sed s/\./\\./g
 84s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
 84s + apt list ?obsolete
 84s + tail -n+2
 84s + cut -d/ -f1
 84s + grep -v ^linux-.*6\.14\.0-10-generic.*
 84s + obsolete_pkgs=linux-headers-6.11.0-8-generic
 84s linux-headers-6.11.0-8
 84s linux-modules-6.11.0-8-generic
 84s linux-tools-6.11.0-8-generic
 84s linux-tools-6.11.0-8
 84s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
 84s Reading package lists...
 84s Building dependency tree...
 84s Reading state information...
 84s Solving dependencies...
 84s The following packages will be REMOVED:
 84s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
 84s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
 84s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
 84s   linux-tools-6.11.0-8-generic*
 84s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
 84s After this operation, 167 MB disk space will be freed.
 84s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
 84s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
 84s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
 84s Removing libpython3.12t64:s390x (3.12.9-1) ...
 84s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
 84s Removing libnsl2:s390x (1.3.0-3build3) ...
 84s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
 85s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
 85s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
 86s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 86s Processing triggers for libc-bin (2.41-1ubuntu1) ...
 86s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
 86s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
 86s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 86s + grep -q trusty /etc/lsb-release
 86s + [ ! -d /usr/share/doc/unattended-upgrades ]
 86s + [ ! -d /usr/share/doc/lxd ]
 86s + [ ! -d /usr/share/doc/lxd-client ]
 86s + [ ! -d /usr/share/doc/snapd ]
 86s + type iptables
 86s + cat
 86s + chmod 755 /etc/rc.local
 86s + . /etc/rc.local
 86s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
 86s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
 86s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
 86s + uname -m
 86s + [ s390x = ppc64le ]
 86s + [ -d /run/systemd/system ]
 86s + systemd-detect-virt --quiet --vm
 86s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
 86s + cat
 86s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
 86s + echo COMPRESS=lz4
 86s autopkgtest [17:50:14]: upgrading testbed (apt dist-upgrade and autopurge)
 86s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 87s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 87s Starting 2 pkgProblemResolver with broken count: 0
 87s Done
 87s Entering ResolveByKeep
 87s 
 87s Calculating upgrade...
 87s The following packages will be upgraded:
 87s   libc-bin libc-dev-bin libc6 libc6-dev locales
 87s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 87s Need to get 9512 kB of archives.
 87s After this operation, 8192 B of additional disk space will be used.
 87s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
 88s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
 88s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
 88s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
 89s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
 89s Preconfiguring packages ...
 89s Fetched 9512 kB in 2s (4952 kB/s)
 89s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
 89s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
 89s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 89s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
 89s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 89s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
 89s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 90s Setting up libc6:s390x (2.41-1ubuntu2) ...
 90s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
 90s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
 90s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 90s Setting up libc-bin (2.41-1ubuntu2) ...
 90s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
 90s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
 90s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 90s Setting up locales (2.41-1ubuntu2) ...
 90s Generating locales (this might take a while)...
 91s   en_US.UTF-8... done
 91s Generation complete.
 91s Setting up libc-dev-bin (2.41-1ubuntu2) ...
 91s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
 91s Processing triggers for man-db (2.13.0-1) ...
 92s Processing triggers for systemd (257.3-1ubuntu3) ...
 93s Reading package lists...
 93s Building dependency tree...
 93s Reading state information...
 93s Starting pkgProblemResolver with broken count: 0
 93s Starting 2 pkgProblemResolver with broken count: 0
 93s Done
 93s Solving dependencies...
 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 94s autopkgtest [17:50:22]: rebooting testbed after setup commands that affected boot
 98s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
114s autopkgtest [17:50:42]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
116s autopkgtest [17:50:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-snpstats
119s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-snpstats 1.56.0+dfsg-2 (dsc) [2203 B]
119s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-snpstats 1.56.0+dfsg-2 (tar) [7752 kB]
119s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-snpstats 1.56.0+dfsg-2 (diff) [4484 B]
119s gpgv: Signature made Sat Jan 11 21:16:46 2025 UTC
119s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
119s gpgv:                issuer "crusoe@debian.org"
119s gpgv: Can't check signature: No public key
119s dpkg-source: warning: cannot verify inline signature for ./r-bioc-snpstats_1.56.0+dfsg-2.dsc: no acceptable signature found
120s autopkgtest [17:50:48]: testing package r-bioc-snpstats version 1.56.0+dfsg-2
120s autopkgtest [17:50:48]: build not needed
128s autopkgtest [17:50:56]: test pkg-r-autopkgtest: preparing testbed
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
128s Starting pkgProblemResolver with broken count: 0
128s Starting 2 pkgProblemResolver with broken count: 0
128s Done
128s The following NEW packages will be installed:
128s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
128s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
128s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
128s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
128s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
128s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
128s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
128s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
128s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
128s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
128s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
128s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
128s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
128s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
128s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
128s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
128s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-snpstats r-bioc-zlibbioc
128s   r-cran-hexbin r-cran-lattice r-cran-matrix r-cran-survival unzip x11-common
128s   xdg-utils zip zlib1g-dev
129s 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded.
129s Need to get 147 MB of archives.
129s After this operation, 392 MB of additional disk space will be used.
129s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
129s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
129s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
130s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
130s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
130s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
130s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
130s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
130s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
130s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
130s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
130s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
130s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
132s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
132s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
132s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
132s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
132s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
133s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
133s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
133s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
133s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
133s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
134s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
134s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
134s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
134s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
134s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
134s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
134s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
135s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
135s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
138s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
138s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
138s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
138s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
138s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
138s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
138s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
138s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
138s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
138s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
138s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
138s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
138s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
138s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
138s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
138s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
138s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
138s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
138s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
138s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
141s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
141s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
141s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
141s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
141s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
141s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
142s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
144s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
144s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
144s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
144s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
144s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
144s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
144s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
144s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
144s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
144s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
145s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
145s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
145s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
145s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
145s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
145s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
145s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
145s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
145s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
146s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
146s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
146s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
146s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
146s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
146s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
146s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
146s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
146s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
146s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
146s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
155s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
155s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
155s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
155s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
155s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
155s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
155s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
155s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
155s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
157s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB]
159s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
159s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-snpstats s390x 1.56.0+dfsg-2 [8472 kB]
161s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hexbin s390x 1.28.5-1 [1583 kB]
163s Preconfiguring packages ...
163s Fetched 147 MB in 34s (4366 kB/s)
163s Selecting previously unselected package libisl23:s390x.
163s (Reading database ... 
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(Reading database ... 90%
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(Reading database ... 56326 files and directories currently installed.)
163s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
163s Unpacking libisl23:s390x (0.27-1) ...
163s Selecting previously unselected package libmpc3:s390x.
163s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
163s Unpacking libmpc3:s390x (1.3.1-1build2) ...
163s Selecting previously unselected package cpp-14-s390x-linux-gnu.
163s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
163s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
163s Selecting previously unselected package cpp-14.
163s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
163s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
163s Selecting previously unselected package cpp-s390x-linux-gnu.
163s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
163s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
163s Selecting previously unselected package cpp.
163s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
163s Unpacking cpp (4:14.2.0-1ubuntu1) ...
163s Selecting previously unselected package libcc1-0:s390x.
163s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
163s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
163s Selecting previously unselected package libgomp1:s390x.
163s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
163s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
163s Selecting previously unselected package libitm1:s390x.
163s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
163s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
163s Selecting previously unselected package libasan8:s390x.
163s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
163s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
163s Selecting previously unselected package libubsan1:s390x.
163s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
163s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
163s Selecting previously unselected package libgcc-14-dev:s390x.
163s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
163s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
163s Selecting previously unselected package gcc-14-s390x-linux-gnu.
163s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
163s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
163s Selecting previously unselected package gcc-14.
163s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
163s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
163s Selecting previously unselected package gcc-s390x-linux-gnu.
163s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
163s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
163s Selecting previously unselected package gcc.
163s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
163s Unpacking gcc (4:14.2.0-1ubuntu1) ...
163s Selecting previously unselected package libstdc++-14-dev:s390x.
163s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
163s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
164s Selecting previously unselected package g++-14-s390x-linux-gnu.
164s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
164s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
164s Selecting previously unselected package g++-14.
164s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
164s Unpacking g++-14 (14.2.0-17ubuntu3) ...
164s Selecting previously unselected package g++-s390x-linux-gnu.
164s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
164s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
164s Selecting previously unselected package g++.
164s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
164s Unpacking g++ (4:14.2.0-1ubuntu1) ...
164s Selecting previously unselected package build-essential.
164s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
164s Unpacking build-essential (12.10ubuntu1) ...
164s Selecting previously unselected package dctrl-tools.
164s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
164s Unpacking dctrl-tools (2.24-3build3) ...
164s Selecting previously unselected package libfreetype6:s390x.
164s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
164s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
164s Selecting previously unselected package fonts-dejavu-mono.
164s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
164s Unpacking fonts-dejavu-mono (2.37-8) ...
164s Selecting previously unselected package fonts-dejavu-core.
164s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
164s Unpacking fonts-dejavu-core (2.37-8) ...
164s Selecting previously unselected package fontconfig-config.
164s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
164s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
164s Selecting previously unselected package libfontconfig1:s390x.
164s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
164s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
164s Selecting previously unselected package fontconfig.
164s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
164s Unpacking fontconfig (2.15.0-2ubuntu1) ...
164s Selecting previously unselected package libgfortran5:s390x.
164s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
164s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
164s Selecting previously unselected package libgfortran-14-dev:s390x.
164s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
164s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
164s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
164s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
164s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
164s Selecting previously unselected package gfortran-14.
164s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
164s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
164s Selecting previously unselected package gfortran-s390x-linux-gnu.
164s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
164s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
164s Selecting previously unselected package gfortran.
164s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
164s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
164s Selecting previously unselected package icu-devtools.
164s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
164s Unpacking icu-devtools (76.1-1ubuntu2) ...
164s Selecting previously unselected package libblas3:s390x.
164s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
164s Unpacking libblas3:s390x (3.12.1-2) ...
164s Selecting previously unselected package libblas-dev:s390x.
164s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
164s Unpacking libblas-dev:s390x (3.12.1-2) ...
164s Selecting previously unselected package libbz2-dev:s390x.
164s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
164s Unpacking libbz2-dev:s390x (1.0.8-6) ...
164s Selecting previously unselected package libpixman-1-0:s390x.
164s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
164s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
164s Selecting previously unselected package libxcb-render0:s390x.
164s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
164s Unpacking libxcb-render0:s390x (1.17.0-2) ...
164s Selecting previously unselected package libxcb-shm0:s390x.
164s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
164s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
164s Selecting previously unselected package libxrender1:s390x.
164s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
164s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
164s Selecting previously unselected package libcairo2:s390x.
164s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
164s Unpacking libcairo2:s390x (1.18.2-2) ...
164s Selecting previously unselected package libdatrie1:s390x.
164s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
164s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
164s Selecting previously unselected package libdeflate0:s390x.
164s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
164s Unpacking libdeflate0:s390x (1.23-1) ...
164s Selecting previously unselected package libdeflate-dev:s390x.
164s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
164s Unpacking libdeflate-dev:s390x (1.23-1) ...
164s Selecting previously unselected package libgraphite2-3:s390x.
164s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
164s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
164s Selecting previously unselected package libharfbuzz0b:s390x.
164s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
164s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
164s Selecting previously unselected package x11-common.
164s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
164s Unpacking x11-common (1:7.7+23ubuntu3) ...
164s Selecting previously unselected package libice6:s390x.
164s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
164s Unpacking libice6:s390x (2:1.1.1-1) ...
164s Selecting previously unselected package libicu-dev:s390x.
164s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
164s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
165s Selecting previously unselected package libjpeg-turbo8:s390x.
165s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
165s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
165s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
165s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
165s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
165s Selecting previously unselected package libjpeg8:s390x.
165s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
165s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
165s Selecting previously unselected package libjpeg8-dev:s390x.
165s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
165s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
165s Selecting previously unselected package libjpeg-dev:s390x.
165s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
165s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
165s Selecting previously unselected package liblapack3:s390x.
165s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
165s Unpacking liblapack3:s390x (3.12.1-2) ...
165s Selecting previously unselected package liblapack-dev:s390x.
165s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ...
165s Unpacking liblapack-dev:s390x (3.12.1-2) ...
165s Selecting previously unselected package libncurses-dev:s390x.
165s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
165s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
165s Selecting previously unselected package libthai-data.
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165s Unpacking libthai-data (0.1.29-2build1) ...
165s Selecting previously unselected package libthai0:s390x.
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165s Selecting previously unselected package libpango-1.0-0:s390x.
165s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
165s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
165s Selecting previously unselected package libpangoft2-1.0-0:s390x.
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165s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
165s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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165s Selecting previously unselected package libpaper2:s390x.
165s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
165s Unpacking libpaper2:s390x (2.2.5-0.3) ...
165s Selecting previously unselected package libpaper-utils.
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165s Selecting previously unselected package libpcre2-16-0:s390x.
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165s Selecting previously unselected package libpcre2-posix3:s390x.
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166s Selecting previously unselected package liblzma-dev:s390x.
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166s Selecting previously unselected package r-bioc-biocgenerics.
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166s Selecting previously unselected package r-bioc-zlibbioc.
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166s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
166s Setting up libpixman-1-0:s390x (0.44.0-3) ...
166s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
166s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
166s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
166s Setting up libdatrie1:s390x (0.2.13-3build1) ...
166s Setting up libxcb-render0:s390x (1.17.0-2) ...
166s Setting up unzip (6.0-28ubuntu6) ...
166s Setting up x11-common (1:7.7+23ubuntu3) ...
166s Setting up libdeflate0:s390x (1.23-1) ...
166s Setting up libxcb-shm0:s390x (1.17.0-2) ...
166s Setting up libreadline-dev:s390x (8.2-6) ...
166s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
166s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
166s Setting up libpcre2-16-0:s390x (10.45-1) ...
166s Setting up zip (3.0-14ubuntu2) ...
166s Setting up libpcre2-32-0:s390x (10.45-1) ...
166s Setting up libblas3:s390x (3.12.1-2) ...
166s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
166s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
166s Setting up libpkgconf3:s390x (1.8.1-4) ...
166s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
166s Setting up fonts-dejavu-mono (2.37-8) ...
166s Setting up libmpc3:s390x (1.3.1-1build2) ...
166s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
166s Setting up icu-devtools (76.1-1ubuntu2) ...
166s Setting up fonts-dejavu-core (2.37-8) ...
166s Setting up pkgconf-bin (1.8.1-4) ...
166s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
166s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
166s Setting up libwebp7:s390x (1.5.0-0.1) ...
166s Setting up liblzma-dev:s390x (5.6.4-1) ...
166s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
166s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
166s Setting up libpcre2-posix3:s390x (10.45-1) ...
166s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
166s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
166s Setting up libthai-data (0.1.29-2build1) ...
166s Setting up libxss1:s390x (1:1.2.3-1build3) ...
166s Setting up libpaper2:s390x (2.2.5-0.3) ...
166s Setting up libisl23:s390x (0.27-1) ...
166s Setting up libdeflate-dev:s390x (1.23-1) ...
166s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
166s Setting up xdg-utils (1.2.1-2ubuntu1) ...
166s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
166s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
166s Setting up libblas-dev:s390x (3.12.1-2) ...
166s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
166s Setting up dctrl-tools (2.24-3build3) ...
166s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
166s Setting up libbz2-dev:s390x (1.0.8-6) ...
166s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
166s Setting up libice6:s390x (2:1.1.1-1) ...
166s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
166s Setting up liblapack3:s390x (3.12.1-2) ...
166s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
166s Setting up libpcre2-dev:s390x (10.45-1) ...
166s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
166s Setting up libpng-dev:s390x (1.6.47-1) ...
166s Setting up libpaper-utils (2.2.5-0.3) ...
166s Setting up pkgconf:s390x (1.8.1-4) ...
166s Setting up libthai0:s390x (0.1.29-2build1) ...
166s Setting up liblapack-dev:s390x (3.12.1-2) ...
166s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
166s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
166s Setting up cpp-14 (14.2.0-17ubuntu3) ...
166s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
166s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
166s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
166s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
166s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
166s Setting up libsm6:s390x (2:1.2.4-1) ...
166s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
166s Setting up fontconfig (2.15.0-2ubuntu1) ...
168s Regenerating fonts cache... done.
168s Setting up libxft2:s390x (2.3.6-1build1) ...
168s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
168s Setting up libtk8.6:s390x (8.6.16-1) ...
168s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
168s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
168s Setting up libcairo2:s390x (1.18.2-2) ...
168s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
168s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
168s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
168s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
168s Setting up cpp (4:14.2.0-1ubuntu1) ...
168s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
168s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
168s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
168s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
168s Setting up gcc-14 (14.2.0-17ubuntu3) ...
168s Setting up r-base-core (4.4.3-1) ...
169s Creating config file /etc/R/Renviron with new version
169s Setting up r-cran-lattice (0.22-6-1) ...
169s Setting up r-cran-hexbin (1.28.5-1) ...
169s Setting up g++-14 (14.2.0-17ubuntu3) ...
169s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
169s Setting up r-bioc-biocgenerics (0.52.0-2) ...
169s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
169s Setting up gcc (4:14.2.0-1ubuntu1) ...
169s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
169s Setting up r-cran-matrix (1.7-3-1) ...
169s Setting up g++ (4:14.2.0-1ubuntu1) ...
169s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
169s Setting up build-essential (12.10ubuntu1) ...
169s Setting up r-cran-survival (3.8-3-1) ...
169s Setting up gfortran (4:14.2.0-1ubuntu1) ...
169s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
169s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
169s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
169s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
169s Setting up r-bioc-snpstats (1.56.0+dfsg-2) ...
169s Setting up r-base-dev (4.4.3-1) ...
169s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
169s Processing triggers for libc-bin (2.41-1ubuntu2) ...
169s Processing triggers for man-db (2.13.0-1) ...
169s Processing triggers for install-info (7.1.1-1) ...
170s autopkgtest [17:51:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
170s autopkgtest [17:51:38]: test pkg-r-autopkgtest: [-----------------------
170s Test: Try to load the R library snpStats
170s 
170s R version 4.4.3 (2025-02-28) -- "Trophy Case"
170s Copyright (C) 2025 The R Foundation for Statistical Computing
170s Platform: s390x-ibm-linux-gnu
170s 
170s R is free software and comes with ABSOLUTELY NO WARRANTY.
170s You are welcome to redistribute it under certain conditions.
170s Type 'license()' or 'licence()' for distribution details.
170s 
170s R is a collaborative project with many contributors.
170s Type 'contributors()' for more information and
170s 'citation()' on how to cite R or R packages in publications.
170s 
170s Type 'demo()' for some demos, 'help()' for on-line help, or
170s 'help.start()' for an HTML browser interface to help.
170s Type 'q()' to quit R.
170s 
170s Loading required package: survival
170s > library('snpStats')
171s Loading required package: Matrix
171s > 
171s > 
171s Other tests are currently unsupported!
171s They will be progressively added.
171s autopkgtest [17:51:39]: test pkg-r-autopkgtest: -----------------------]
172s autopkgtest [17:51:40]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
172s pkg-r-autopkgtest    PASS
172s autopkgtest [17:51:40]: @@@@@@@@@@@@@@@@@@@@ summary
172s pkg-r-autopkgtest    PASS
190s nova [W] Using flock in prodstack6-s390x
190s Creating nova instance adt-plucky-s390x-r-bioc-snpstats-20250315-174847-juju-7f2275-prod-proposed-migration-environment-15-2929b3f1-f3c5-4b11-9247-c11c6d4f9008 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
190s nova [W] Timed out waiting for f6295739-726b-4f75-b086-437675cccdfb to get deleted.