0s autopkgtest [17:48:38]: starting date and time: 2025-03-15 17:48:38+0000 0s autopkgtest [17:48:38]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:48:38]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lw2y9l7l/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-singler --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-30.secgroup --name adt-plucky-s390x-r-bioc-singler-20250315-174838-juju-7f2275-prod-proposed-migration-environment-15-83b45fb8-8eeb-4d91-8ec6-3cbb6a163cd0 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 94s autopkgtest [17:50:12]: testbed dpkg architecture: s390x 94s autopkgtest [17:50:12]: testbed apt version: 2.9.33 95s autopkgtest [17:50:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 95s autopkgtest [17:50:13]: testbed release detected to be: None 96s autopkgtest [17:50:14]: updating testbed package index (apt update) 96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 96s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 96s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 96s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 96s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 97s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 97s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 97s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 97s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 97s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 97s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 97s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 97s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 97s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 97s Fetched 1073 kB in 2s (677 kB/s) 98s Reading package lists... 99s + lsb_release --codename --short 99s + RELEASE=plucky 99s + cat 99s + [ plucky != trusty ] 99s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 99s Calculating upgrade... 99s The following packages were automatically installed and are no longer required: 99s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 99s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 99s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 99s linux-tools-6.11.0-8-generic 99s Use 'sudo apt autoremove' to remove them. 99s The following packages will be upgraded: 99s pinentry-curses python3-jinja2 strace 99s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 652 kB of archives. 99s After this operation, 27.6 kB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 100s Fetched 652 kB in 1s (736 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 100s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 100s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 100s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 100s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 100s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 100s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 100s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 100s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 101s Setting up strace (6.13+ds-1ubuntu1) ... 101s Processing triggers for man-db (2.13.0-1) ... 101s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 101s + /usr/lib/apt/apt-helper analyze-pattern ?true 101s + uname -r 101s + sed s/\./\\./g 101s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 101s + apt list ?obsolete 101s + tail -n+2 101s + cut -d/ -f1 101s + grep -v ^linux-.*6\.14\.0-10-generic.* 101s + obsolete_pkgs=linux-headers-6.11.0-8-generic 101s linux-headers-6.11.0-8 101s linux-modules-6.11.0-8-generic 101s linux-tools-6.11.0-8-generic 101s linux-tools-6.11.0-8 101s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Solving dependencies... 101s The following packages will be REMOVED: 101s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 101s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 101s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 101s linux-tools-6.11.0-8-generic* 102s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 102s After this operation, 167 MB disk space will be freed. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 102s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 102s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 102s Removing libpython3.12t64:s390x (3.12.9-1) ... 102s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 102s Removing libnsl2:s390x (1.3.0-3build3) ... 102s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 102s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 102s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 103s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 103s Processing triggers for libc-bin (2.41-1ubuntu1) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 103s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 103s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 103s + grep -q trusty /etc/lsb-release 103s + [ ! -d /usr/share/doc/unattended-upgrades ] 103s + [ ! -d /usr/share/doc/lxd ] 103s + [ ! -d /usr/share/doc/lxd-client ] 103s + [ ! -d /usr/share/doc/snapd ] 103s + type iptables 103s + cat 103s + chmod 755 /etc/rc.local 103s + . /etc/rc.local 103s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 103s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 103s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 103s + uname -m 103s + [ s390x = ppc64le ] 103s + [ -d /run/systemd/system ] 103s + systemd-detect-virt --quiet --vm 103s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 103s + cat 103s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 103s + echo COMPRESS=lz4 103s autopkgtest [17:50:21]: upgrading testbed (apt dist-upgrade and autopurge) 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 104s Entering ResolveByKeep 104s 104s Calculating upgrade... 104s The following packages will be upgraded: 104s libc-bin libc-dev-bin libc6 libc6-dev locales 104s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 9512 kB of archives. 104s After this operation, 8192 B of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 113s Preconfiguring packages ... 113s Fetched 9512 kB in 9s (1097 kB/s) 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 113s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 113s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 113s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 113s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 113s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 113s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 113s Setting up libc6:s390x (2.41-1ubuntu2) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 113s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 113s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 113s Setting up libc-bin (2.41-1ubuntu2) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 113s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 113s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 113s Setting up locales (2.41-1ubuntu2) ... 114s Generating locales (this might take a while)... 115s en_US.UTF-8... done 115s Generation complete. 115s Setting up libc-dev-bin (2.41-1ubuntu2) ... 115s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 115s Processing triggers for man-db (2.13.0-1) ... 115s Processing triggers for systemd (257.3-1ubuntu3) ... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Starting pkgProblemResolver with broken count: 0 116s Starting 2 pkgProblemResolver with broken count: 0 116s Done 116s Solving dependencies... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s autopkgtest [17:50:35]: rebooting testbed after setup commands that affected boot 135s autopkgtest [17:50:53]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 138s autopkgtest [17:50:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-singler 139s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-singler 2.8.0+ds-3 (dsc) [2417 B] 139s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-singler 2.8.0+ds-3 (tar) [62.2 kB] 139s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-singler 2.8.0+ds-3 (diff) [3720 B] 140s gpgv: Signature made Tue Jan 21 13:14:54 2025 UTC 140s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 140s gpgv: issuer "crusoe@debian.org" 140s gpgv: Can't check signature: No public key 140s dpkg-source: warning: cannot verify inline signature for ./r-bioc-singler_2.8.0+ds-3.dsc: no acceptable signature found 140s autopkgtest [17:50:58]: testing package r-bioc-singler version 2.8.0+ds-3 141s autopkgtest [17:50:59]: build not needed 148s autopkgtest [17:51:06]: test pkg-r-autopkgtest: preparing testbed 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 1 148s Starting 2 pkgProblemResolver with broken count: 1 148s Investigating (0) r-bioc-scrnaseq:s390x < none -> 2.20.0+ds-2 @un puN Ib > 148s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-experimenthub:s390x < none | 2.14.0+ds-2 @un uH > (>= 2.3.4) 148s Considering r-bioc-experimenthub:s390x 0 as a solution to r-bioc-scrnaseq:s390x 0 148s Re-Instated r-cran-blob:s390x 148s Re-Instated r-cran-dbi:s390x 148s Re-Instated r-cran-generics:s390x 148s Re-Instated r-cran-tidyselect:s390x 148s Re-Instated r-cran-dplyr:s390x 148s Re-Instated r-cran-purrr:s390x 148s Re-Instated r-cran-stringi:s390x 148s Re-Instated r-cran-stringr:s390x 148s Re-Instated r-cran-tidyr:s390x 148s Re-Instated r-cran-dbplyr:s390x 148s Re-Instated r-cran-bit:s390x 148s Re-Instated r-cran-bit64:s390x 148s Re-Instated r-cran-plogr:s390x 148s Re-Instated r-cran-rsqlite:s390x 148s Re-Instated r-cran-filelock:s390x 148s Re-Instated r-bioc-biocfilecache:s390x 148s Re-Instated r-bioc-biostrings:s390x 148s Re-Instated r-bioc-keggrest:s390x 148s Re-Instated r-bioc-annotationdbi:s390x 148s Re-Instated r-bioc-annotationhub:s390x 148s Re-Instated r-bioc-experimenthub:s390x 148s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-ensembldb:s390x < none | 2.30.0+dfsg-3 @un uH > 148s Considering r-bioc-ensembldb:s390x 1 as a solution to r-bioc-scrnaseq:s390x 0 148s Re-Instated r-cran-xml:s390x 148s Re-Instated r-cran-bitops:s390x 148s Re-Instated r-bioc-rhtslib:s390x 148s Re-Instated r-bioc-rsamtools:s390x 148s Re-Instated r-bioc-genomicalignments:s390x 148s Re-Instated r-bioc-biocio:s390x 148s Re-Instated r-cran-rcurl:s390x 148s Re-Instated r-cran-rjson:s390x 148s Re-Instated r-cran-restfulr:s390x 148s Re-Instated r-bioc-rtracklayer:s390x 148s Re-Instated r-bioc-genomicfeatures:s390x 148s Re-Instated r-cran-lazyeval:s390x 148s Re-Instated r-bioc-annotationfilter:s390x 148s Re-Instated r-bioc-protgenerics:s390x 148s Re-Instated r-bioc-ensembldb:s390x 148s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-alabaster.base:s390x < none @un H > 148s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-alabaster.matrix:s390x < none @un H > 148s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-alabaster.sce:s390x < none | 1.6.0+ds-2 @un uH > 148s Considering r-bioc-alabaster.sce:s390x 1 as a solution to r-bioc-scrnaseq:s390x 0 148s Reinst Failed early because of r-bioc-alabaster.base:s390x 148s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-gypsum:s390x < none | 1.2.0+ds-2 @un uH > 148s Considering r-bioc-gypsum:s390x 1 as a solution to r-bioc-scrnaseq:s390x 0 148s Re-Instated r-cran-httr2:s390x 148s Re-Instated r-bioc-gypsum:s390x 148s Done 148s Some packages could not be installed. This may mean that you have 148s requested an impossible situation or if you are using the unstable 148s distribution that some required packages have not yet been created 148s or been moved out of Incoming. 148s The following information may help to resolve the situation: 148s 148s The following packages have unmet dependencies: 148s r-bioc-scrnaseq : Depends: r-bioc-alabaster.base but it is not installable 148s Depends: r-bioc-alabaster.matrix but it is not installable 148s Depends: r-bioc-alabaster.sce but it is not going to be installed 148s E: Unable to correct problems, you have held broken packages. 148s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Starting pkgProblemResolver with broken count: 1 149s Starting 2 pkgProblemResolver with broken count: 1 149s Investigating (0) r-bioc-scrnaseq:s390x < none -> 2.20.0+ds-2 @un puN Ib > 149s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-experimenthub:s390x < none | 2.14.0+ds-2 @un uH > (>= 2.3.4) 149s Considering r-bioc-experimenthub:s390x 0 as a solution to r-bioc-scrnaseq:s390x 0 149s Re-Instated r-cran-blob:s390x 149s Re-Instated r-cran-dbi:s390x 149s Re-Instated r-cran-generics:s390x 149s Re-Instated r-cran-tidyselect:s390x 149s Re-Instated r-cran-dplyr:s390x 149s Re-Instated r-cran-purrr:s390x 149s Re-Instated r-cran-stringi:s390x 149s Re-Instated r-cran-stringr:s390x 149s Re-Instated r-cran-tidyr:s390x 149s Re-Instated r-cran-dbplyr:s390x 149s Re-Instated r-cran-bit:s390x 149s Re-Instated r-cran-bit64:s390x 149s Re-Instated r-cran-plogr:s390x 149s Re-Instated r-cran-rsqlite:s390x 149s Re-Instated r-cran-filelock:s390x 149s Re-Instated r-bioc-biocfilecache:s390x 149s Re-Instated r-bioc-biostrings:s390x 149s Re-Instated r-bioc-keggrest:s390x 149s Re-Instated r-bioc-annotationdbi:s390x 149s Re-Instated r-bioc-annotationhub:s390x 149s Re-Instated r-bioc-experimenthub:s390x 149s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-ensembldb:s390x < none | 2.30.0+dfsg-3 @un uH > 149s Considering r-bioc-ensembldb:s390x 1 as a solution to r-bioc-scrnaseq:s390x 0 149s Re-Instated r-cran-xml:s390x 149s Re-Instated r-cran-bitops:s390x 149s Re-Instated r-bioc-rhtslib:s390x 149s Re-Instated r-bioc-rsamtools:s390x 149s Re-Instated r-bioc-genomicalignments:s390x 149s Re-Instated r-bioc-biocio:s390x 149s Re-Instated r-cran-rcurl:s390x 149s Re-Instated r-cran-rjson:s390x 149s Re-Instated r-cran-restfulr:s390x 149s Re-Instated r-bioc-rtracklayer:s390x 149s Re-Instated r-bioc-genomicfeatures:s390x 149s Re-Instated r-cran-lazyeval:s390x 149s Re-Instated r-bioc-annotationfilter:s390x 149s Re-Instated r-bioc-protgenerics:s390x 149s Re-Instated r-bioc-ensembldb:s390x 149s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-alabaster.base:s390x < none @un H > 149s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-alabaster.matrix:s390x < none @un H > 149s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-alabaster.sce:s390x < none | 1.6.0+ds-2 @un uH > 149s Considering r-bioc-alabaster.sce:s390x 1 as a solution to r-bioc-scrnaseq:s390x 0 149s Reinst Failed early because of r-bioc-alabaster.base:s390x 149s Broken r-bioc-scrnaseq:s390x Depends on r-bioc-gypsum:s390x < none | 1.2.0+ds-2 @un uH > 149s Considering r-bioc-gypsum:s390x 1 as a solution to r-bioc-scrnaseq:s390x 0 149s Re-Instated r-cran-httr2:s390x 149s Re-Instated r-bioc-gypsum:s390x 149s Done 149s Some packages could not be installed. This may mean that you have 149s requested an impossible situation or if you are using the unstable 149s distribution that some required packages have not yet been created 149s or been moved out of Incoming. 149s The following information may help to resolve the situation: 149s 149s The following packages have unmet dependencies: 149s r-bioc-scrnaseq : Depends: r-bioc-alabaster.base but it is not installable 149s Depends: r-bioc-alabaster.matrix but it is not installable 149s Depends: r-bioc-alabaster.sce but it is not going to be installed 149s E: Unable to correct problems, you have held broken packages. 149s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 149s autopkgtest [17:51:07]: @@@@@@@@@@@@@@@@@@@@ summary 149s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 168s nova [W] Using flock in prodstack6-s390x 168s Creating nova instance adt-plucky-s390x-r-bioc-singler-20250315-174838-juju-7f2275-prod-proposed-migration-environment-15-83b45fb8-8eeb-4d91-8ec6-3cbb6a163cd0 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 168s nova [W] Timed out waiting for 7fcfff79-3735-44f8-b56c-3c5e45989dab to get deleted.