0s autopkgtest [17:48:36]: starting date and time: 2025-03-15 17:48:36+0000 0s autopkgtest [17:48:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:48:36]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6dnnxp9l/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-25.secgroup --name adt-plucky-s390x-r-bioc-shortread-20250315-174835-juju-7f2275-prod-proposed-migration-environment-20-c3797bef-b74f-4ccc-8478-2608d8cbe59d --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 105s autopkgtest [17:50:21]: testbed dpkg architecture: s390x 105s autopkgtest [17:50:21]: testbed apt version: 2.9.33 106s autopkgtest [17:50:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s autopkgtest [17:50:22]: testbed release detected to be: None 106s autopkgtest [17:50:22]: updating testbed package index (apt update) 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 107s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 107s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 107s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 107s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 108s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 108s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 108s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 108s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 108s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 108s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 108s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 108s Fetched 1073 kB in 2s (678 kB/s) 109s Reading package lists... 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 110s Calculating upgrade... 110s The following packages were automatically installed and are no longer required: 110s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 110s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 110s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 110s linux-tools-6.11.0-8-generic 110s Use 'sudo apt autoremove' to remove them. 110s The following packages will be upgraded: 110s pinentry-curses python3-jinja2 strace 110s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 652 kB of archives. 110s After this operation, 27.6 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 111s Fetched 652 kB in 1s (700 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 111s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 111s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 111s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 111s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 111s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 111s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 111s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 111s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 111s Setting up strace (6.13+ds-1ubuntu1) ... 111s Processing triggers for man-db (2.13.0-1) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Solving dependencies... 112s The following packages will be REMOVED: 112s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 112s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 112s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 112s linux-tools-6.11.0-8-generic* 112s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 112s After this operation, 167 MB disk space will be freed. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 112s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 112s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 112s Removing libpython3.12t64:s390x (3.12.9-1) ... 112s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 112s Removing libnsl2:s390x (1.3.0-3build3) ... 112s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 112s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 113s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 113s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 113s Processing triggers for libc-bin (2.41-1ubuntu1) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 113s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 113s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 114s autopkgtest [17:50:30]: upgrading testbed (apt dist-upgrade and autopurge) 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 114s Starting 2 pkgProblemResolver with broken count: 0 114s Done 114s Entering ResolveByKeep 114s 114s Calculating upgrade... 114s The following packages will be upgraded: 114s libc-bin libc-dev-bin libc6 libc6-dev locales 115s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 9512 kB of archives. 115s After this operation, 8192 B of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 117s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 117s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 120s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 125s Preconfiguring packages ... 125s Fetched 9512 kB in 10s (957 kB/s) 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 125s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 125s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 125s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 125s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 125s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 125s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 125s Setting up libc6:s390x (2.41-1ubuntu2) ... 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 125s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 125s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 125s Setting up libc-bin (2.41-1ubuntu2) ... 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 125s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 125s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 125s Setting up locales (2.41-1ubuntu2) ... 126s Generating locales (this might take a while)... 126s en_US.UTF-8... done 126s Generation complete. 126s Setting up libc-dev-bin (2.41-1ubuntu2) ... 126s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 126s Processing triggers for man-db (2.13.0-1) ... 127s Processing triggers for systemd (257.3-1ubuntu3) ... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Starting pkgProblemResolver with broken count: 0 128s Starting 2 pkgProblemResolver with broken count: 0 128s Done 128s Solving dependencies... 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s autopkgtest [17:50:45]: rebooting testbed after setup commands that affected boot 137s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 147s autopkgtest [17:51:03]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 149s autopkgtest [17:51:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread 156s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (dsc) [2409 B] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (tar) [5321 kB] 156s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (diff) [6160 B] 156s gpgv: Signature made Mon Jan 27 12:34:30 2025 UTC 156s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 156s gpgv: issuer "crusoe@debian.org" 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.64.0-3.dsc: no acceptable signature found 156s autopkgtest [17:51:12]: testing package r-bioc-shortread version 1.64.0-3 158s autopkgtest [17:51:14]: build not needed 160s autopkgtest [17:51:16]: test pkg-r-autopkgtest: preparing testbed 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Starting pkgProblemResolver with broken count: 0 160s Starting 2 pkgProblemResolver with broken count: 0 160s Done 160s The following NEW packages will be installed: 160s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 160s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 160s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 160s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 160s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 160s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 160s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 160s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 160s libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev 160s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 160s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 160s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 160s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 160s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 160s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 160s libjs-popper.js libjs-prettify libjs-sifter.js 160s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 160s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libmpfi0 160s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 160s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 160s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 160s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 160s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 160s libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 160s libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 160s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 160s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 160s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 160s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion 160s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 160s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 160s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 160s r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 160s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 160s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 160s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 160s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 160s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 160s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr 160s r-cran-deldir r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 160s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 160s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 160s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 160s r-cran-httr2 r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib 160s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice 160s r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr 160s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 160s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 160s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 160s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 160s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 160s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 160s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 160s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 160s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 160s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 160s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 161s 0 upgraded, 278 newly installed, 0 to remove and 0 not upgraded. 161s Need to get 445 MB of archives. 161s After this operation, 1447 MB of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 161s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 161s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 171s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 171s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 171s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 171s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 171s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 171s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 171s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 174s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 175s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 176s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 192s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 192s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 192s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 192s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 194s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 204s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 204s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 204s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 204s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 204s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 204s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 204s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 205s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 205s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 205s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 206s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 206s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 206s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 206s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 211s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 213s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 214s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 214s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 223s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 223s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 223s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 223s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 224s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B] 224s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB] 224s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB] 224s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 224s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 224s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 224s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB] 233s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 233s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 233s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 233s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 233s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 233s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 233s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 233s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 233s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 233s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 233s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 233s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 234s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 234s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 234s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 244s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 244s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 244s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 244s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 244s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 244s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 244s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 244s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 245s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 245s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 245s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 245s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 245s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 246s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 246s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 246s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 246s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 246s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 246s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 246s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 246s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB] 246s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 249s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 252s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 253s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB] 253s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 253s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 253s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 253s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 253s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 253s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 253s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 253s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 253s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 253s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 253s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 253s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 254s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 254s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 255s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 255s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB] 255s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB] 255s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 256s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 256s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 256s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB] 256s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 257s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 257s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB] 257s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 257s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 258s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 258s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 258s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 258s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 259s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 259s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 259s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB] 259s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB] 259s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 259s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB] 259s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 260s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 260s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 260s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 290s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 290s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 290s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 291s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 291s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 291s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 291s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 349s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 349s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 349s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 350s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 350s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 350s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 350s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 351s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 354s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 357s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 359s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB] 360s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB] 361s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB] 362s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 363s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 365s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 365s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 366s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 367s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 368s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 368s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 368s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 368s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 368s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 368s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 369s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB] 370s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 370s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 371s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 371s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 371s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 371s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 372s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 372s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 373s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 373s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 373s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 373s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 374s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 386s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 390s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 390s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 401s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 401s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 406s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 406s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 406s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 407s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 407s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 408s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB] 408s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 409s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyselect s390x 1.2.1+dfsg-1 [222 kB] 409s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dplyr s390x 1.1.4-4 [1537 kB] 410s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-purrr s390x 1.0.4-1 [553 kB] 411s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringi s390x 1.8.4-1build1 [917 kB] 412s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 412s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 413s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 414s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 414s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 415s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 415s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB] 415s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 415s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 415s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 416s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 416s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB] 416s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 416s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB] 418s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 418s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 418s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 418s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 419s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 419s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 419s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 420s Get:211 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 425s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 426s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 426s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 426s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 427s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 428s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 432s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB] 433s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB] 433s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 433s Get:221 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 434s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 436s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 436s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 436s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 437s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 438s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 438s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 438s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 438s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 442s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 443s Get:232 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 445s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 445s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB] 445s Get:235 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB] 445s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB] 453s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB] 473s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB] 475s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 550s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB] 550s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 550s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 551s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 551s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 551s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr2 all 1.1.1-1 [752 kB] 552s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml2 s390x 1.3.7-1 [328 kB] 552s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 553s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 554s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 558s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB] 559s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 559s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 559s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB] 560s Get:254 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB] 561s Get:255 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB] 563s Get:256 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB] 565s Get:257 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 566s Get:258 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 566s Get:259 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB] 567s Get:260 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB] 571s Get:261 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB] 573s Get:262 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 575s Get:263 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 575s Get:264 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB] 576s Get:265 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 576s Get:266 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB] 581s Get:267 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 582s Get:268 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-pwalign s390x 1.2.0-2 [750 kB] 583s Get:269 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hwriter all 1.3.2.1-1 [106 kB] 583s Get:270 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB] 583s Get:271 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 583s Get:272 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-deldir s390x 2.0-4-1build1 [271 kB] 584s Get:273 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcppeigen s390x 0.3.4.0.2-1 [1429 kB] 585s Get:274 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB] 586s Get:275 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB] 588s Get:276 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB] 590s Get:277 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-shortread s390x 1.64.0-3 [5288 kB] 595s Get:278 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB] 596s Preconfiguring packages ... 596s Fetched 445 MB in 7min 15s (1024 kB/s) 596s Selecting previously unselected package libisl23:s390x. 596s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 596s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 596s Unpacking libisl23:s390x (0.27-1) ... 596s Selecting previously unselected package libmpc3:s390x. 596s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 596s Unpacking libmpc3:s390x (1.3.1-1build2) ... 596s Selecting previously unselected package cpp-14-s390x-linux-gnu. 596s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 596s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 596s Selecting previously unselected package cpp-14. 596s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 596s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 596s Selecting previously unselected package cpp-s390x-linux-gnu. 596s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 596s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 596s Selecting previously unselected package cpp. 596s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 596s Unpacking cpp (4:14.2.0-1ubuntu1) ... 596s Selecting previously unselected package libcc1-0:s390x. 596s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 596s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 596s Selecting previously unselected package libgomp1:s390x. 596s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 596s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 596s Selecting previously unselected package libitm1:s390x. 596s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ... 596s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 596s Selecting previously unselected package libasan8:s390x. 596s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ... 596s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 596s Selecting previously unselected package libubsan1:s390x. 596s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 596s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 596s Selecting previously unselected package libgcc-14-dev:s390x. 596s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 596s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 596s Selecting previously unselected package gcc-14-s390x-linux-gnu. 596s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 596s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package gcc-14. 597s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 597s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package gcc-s390x-linux-gnu. 597s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 597s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 597s Selecting previously unselected package gcc. 597s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 597s Unpacking gcc (4:14.2.0-1ubuntu1) ... 597s Selecting previously unselected package libstdc++-14-dev:s390x. 597s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 597s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package g++-14-s390x-linux-gnu. 597s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 597s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package g++-14. 597s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ... 597s Unpacking g++-14 (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package g++-s390x-linux-gnu. 597s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 597s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 597s Selecting previously unselected package g++. 597s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 597s Unpacking g++ (4:14.2.0-1ubuntu1) ... 597s Selecting previously unselected package build-essential. 597s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ... 597s Unpacking build-essential (12.10ubuntu1) ... 597s Selecting previously unselected package dctrl-tools. 597s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 597s Unpacking dctrl-tools (2.24-3build3) ... 597s Selecting previously unselected package libfreetype6:s390x. 597s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 597s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 597s Selecting previously unselected package fonts-dejavu-mono. 597s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 597s Unpacking fonts-dejavu-mono (2.37-8) ... 597s Selecting previously unselected package fonts-dejavu-core. 597s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 597s Unpacking fonts-dejavu-core (2.37-8) ... 597s Selecting previously unselected package fontconfig-config. 597s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 597s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 597s Selecting previously unselected package libfontconfig1:s390x. 597s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 597s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 597s Selecting previously unselected package fontconfig. 597s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 597s Unpacking fontconfig (2.15.0-2ubuntu1) ... 597s Selecting previously unselected package fonts-font-awesome. 597s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 597s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 597s Selecting previously unselected package fonts-glyphicons-halflings. 597s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 597s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 597s Selecting previously unselected package fonts-lmodern. 597s Preparing to unpack .../031-fonts-lmodern_2.005-1_all.deb ... 597s Unpacking fonts-lmodern (2.005-1) ... 597s Selecting previously unselected package fonts-mathjax. 597s Preparing to unpack .../032-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 597s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 597s Selecting previously unselected package libgfortran5:s390x. 597s Preparing to unpack .../033-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 597s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libgfortran-14-dev:s390x. 597s Preparing to unpack .../034-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 597s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 597s Preparing to unpack .../035-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 597s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package gfortran-14. 598s Preparing to unpack .../036-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 598s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package gfortran-s390x-linux-gnu. 598s Preparing to unpack .../037-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 598s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 598s Selecting previously unselected package gfortran. 598s Preparing to unpack .../038-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 598s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 598s Selecting previously unselected package icu-devtools. 598s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_s390x.deb ... 598s Unpacking icu-devtools (76.1-1ubuntu2) ... 598s Selecting previously unselected package javascript-common. 598s Preparing to unpack .../040-javascript-common_12_all.deb ... 598s Unpacking javascript-common (12) ... 598s Selecting previously unselected package libio-string-perl. 598s Preparing to unpack .../041-libio-string-perl_1.08-4_all.deb ... 598s Unpacking libio-string-perl (1.08-4) ... 598s Selecting previously unselected package liblatex-tounicode-perl. 598s Preparing to unpack .../042-liblatex-tounicode-perl_0.55-1_all.deb ... 598s Unpacking liblatex-tounicode-perl (0.55-1) ... 598s Selecting previously unselected package libbibtex-parser-perl. 598s Preparing to unpack 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599s Unpacking libbz2-dev:s390x (1.0.8-6) ... 599s Selecting previously unselected package libpixman-1-0:s390x. 599s Preparing to unpack .../049-libpixman-1-0_0.44.0-3_s390x.deb ... 599s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 599s Selecting previously unselected package libxcb-render0:s390x. 599s Preparing to unpack .../050-libxcb-render0_1.17.0-2_s390x.deb ... 599s Unpacking libxcb-render0:s390x (1.17.0-2) ... 599s Selecting previously unselected package libxcb-shm0:s390x. 599s Preparing to unpack .../051-libxcb-shm0_1.17.0-2_s390x.deb ... 599s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 599s Selecting previously unselected package libxrender1:s390x. 599s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 599s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 599s Selecting previously unselected package libcairo2:s390x. 599s Preparing to unpack .../053-libcairo2_1.18.2-2_s390x.deb ... 599s Unpacking libcairo2:s390x (1.18.2-2) ... 599s Selecting previously unselected package libdatrie1:s390x. 599s Preparing to unpack .../054-libdatrie1_0.2.13-3build1_s390x.deb ... 599s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 599s Selecting previously unselected package libdeflate0:s390x. 599s Preparing to unpack .../055-libdeflate0_1.23-1_s390x.deb ... 599s Unpacking libdeflate0:s390x (1.23-1) ... 599s Selecting previously unselected package libdeflate-dev:s390x. 599s Preparing to unpack .../056-libdeflate-dev_1.23-1_s390x.deb ... 599s Unpacking libdeflate-dev:s390x (1.23-1) ... 599s Selecting previously unselected package libgraphite2-3:s390x. 599s Preparing to unpack .../057-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 599s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 599s Selecting previously unselected package libharfbuzz0b:s390x. 599s Preparing to unpack .../058-libharfbuzz0b_10.2.0-1_s390x.deb ... 599s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 599s Selecting previously unselected package x11-common. 599s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu3_all.deb ... 599s Unpacking x11-common (1:7.7+23ubuntu3) ... 599s Selecting previously unselected package libice6:s390x. 599s Preparing to unpack .../060-libice6_2%3a1.1.1-1_s390x.deb ... 599s Unpacking libice6:s390x (2:1.1.1-1) ... 599s Selecting previously unselected package libicu-dev:s390x. 599s Preparing to unpack .../061-libicu-dev_76.1-1ubuntu2_s390x.deb ... 599s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 599s Selecting previously unselected package libjpeg-turbo8:s390x. 599s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 599s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 599s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 599s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 599s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 599s Selecting previously unselected package libjpeg8:s390x. 599s Preparing to unpack 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unselected package libjs-sifter.js. 599s Preparing to unpack .../075-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 599s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 599s Selecting previously unselected package libjs-microplugin.js. 599s Preparing to unpack .../076-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 599s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 599s Selecting previously unselected package libjs-jquery-selectize.js. 599s Preparing to unpack .../077-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 599s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 599s Selecting previously unselected package libjs-jquery-ui. 599s Preparing to unpack .../078-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 599s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 599s Selecting previously unselected package libjs-json. 599s Preparing to unpack .../079-libjs-json_0~20221030+~1.0.8-1_all.deb ... 599s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 599s Selecting previously unselected package libjs-lunr. 599s Preparing to unpack .../080-libjs-lunr_2.3.9~dfsg-2_all.deb ... 599s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 599s Selecting previously unselected package libjs-prettify. 599s Preparing to unpack .../081-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 599s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 599s Selecting previously unselected package libkpathsea6:s390x. 599s Preparing to unpack .../082-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ... 599s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ... 599s Selecting previously unselected package liblapack3:s390x. 599s Preparing to unpack .../083-liblapack3_3.12.1-2_s390x.deb ... 599s Unpacking liblapack3:s390x (3.12.1-2) ... 600s Selecting previously unselected package liblapack-dev:s390x. 600s Preparing to unpack .../084-liblapack-dev_3.12.1-2_s390x.deb ... 600s Unpacking liblapack-dev:s390x (3.12.1-2) ... 600s Selecting previously unselected package liblua5.4-0:s390x. 600s Preparing to unpack .../085-liblua5.4-0_5.4.7-1_s390x.deb ... 600s Unpacking liblua5.4-0:s390x (5.4.7-1) ... 600s Selecting previously unselected package libmpfi0:s390x. 600s Preparing to unpack .../086-libmpfi0_1.5.4+ds-4_s390x.deb ... 600s Unpacking libmpfi0:s390x (1.5.4+ds-4) ... 600s Selecting previously unselected package libncurses-dev:s390x. 600s Preparing to unpack .../087-libncurses-dev_6.5+20250216-2_s390x.deb ... 600s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 600s Selecting previously unselected package libthai-data. 600s Preparing to unpack .../088-libthai-data_0.1.29-2build1_all.deb ... 600s Unpacking libthai-data (0.1.29-2build1) ... 600s Selecting previously unselected package libthai0:s390x. 600s Preparing to unpack .../089-libthai0_0.1.29-2build1_s390x.deb ... 600s Unpacking libthai0:s390x (0.1.29-2build1) ... 600s Selecting previously unselected package libpango-1.0-0:s390x. 600s Preparing to unpack .../090-libpango-1.0-0_1.56.2-1_s390x.deb ... 600s Unpacking 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previously unselected package libpcre2-32-0:s390x. 600s Preparing to unpack .../096-libpcre2-32-0_10.45-1_s390x.deb ... 600s Unpacking libpcre2-32-0:s390x (10.45-1) ... 600s Selecting previously unselected package libpcre2-posix3:s390x. 600s Preparing to unpack .../097-libpcre2-posix3_10.45-1_s390x.deb ... 600s Unpacking libpcre2-posix3:s390x (10.45-1) ... 600s Selecting previously unselected package libpcre2-dev:s390x. 600s Preparing to unpack .../098-libpcre2-dev_10.45-1_s390x.deb ... 600s Unpacking libpcre2-dev:s390x (10.45-1) ... 600s Selecting previously unselected package libpkgconf3:s390x. 600s Preparing to unpack .../099-libpkgconf3_1.8.1-4_s390x.deb ... 600s Unpacking libpkgconf3:s390x (1.8.1-4) ... 600s Selecting previously unselected package zlib1g-dev:s390x. 600s Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 600s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 600s Selecting previously unselected package libpng-dev:s390x. 600s Preparing to unpack .../101-libpng-dev_1.6.47-1_s390x.deb ... 600s Unpacking libpng-dev:s390x (1.6.47-1) ... 600s Selecting previously unselected package libpotrace0:s390x. 600s Preparing to unpack .../102-libpotrace0_1.16-2build1_s390x.deb ... 600s Unpacking libpotrace0:s390x (1.16-2build1) ... 600s Selecting previously unselected package libptexenc1:s390x. 600s Preparing to unpack .../103-libptexenc1_2024.20240313.70630+ds-5build2_s390x.deb ... 600s Unpacking libptexenc1:s390x (2024.20240313.70630+ds-5build2) ... 600s Selecting previously unselected package libreadline-dev:s390x. 600s Preparing to unpack .../104-libreadline-dev_8.2-6_s390x.deb ... 600s Unpacking libreadline-dev:s390x (8.2-6) ... 600s Selecting previously unselected package libsharpyuv0:s390x. 600s Preparing to unpack .../105-libsharpyuv0_1.5.0-0.1_s390x.deb ... 600s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 600s Selecting previously unselected package libsm6:s390x. 600s Preparing to unpack .../106-libsm6_2%3a1.2.4-1_s390x.deb ... 600s Unpacking libsm6:s390x (2:1.2.4-1) ... 600s Selecting previously unselected package libsynctex2:s390x. 600s Preparing to unpack .../107-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ... 600s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ... 600s Selecting previously unselected package libtcl8.6:s390x. 600s Preparing to unpack .../108-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 600s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 600s Selecting previously unselected package libteckit0:s390x. 600s Preparing to unpack .../109-libteckit0_2.5.12+ds1-1_s390x.deb ... 600s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 600s Selecting previously unselected package libtexlua53-5:s390x. 600s Preparing to unpack .../110-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ... 600s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ... 600s Selecting previously unselected package libjbig0:s390x. 600s Preparing to unpack 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(8.6.16-1) ... 600s Selecting previously unselected package libxt6t64:s390x. 600s Preparing to unpack .../117-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 600s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 600s Selecting previously unselected package libxmu6:s390x. 600s Preparing to unpack .../118-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 600s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 600s Selecting previously unselected package libxpm4:s390x. 600s Preparing to unpack .../119-libxpm4_1%3a3.5.17-1build2_s390x.deb ... 600s Unpacking libxpm4:s390x (1:3.5.17-1build2) ... 600s Selecting previously unselected package libxaw7:s390x. 600s Preparing to unpack .../120-libxaw7_2%3a1.0.16-1_s390x.deb ... 600s Unpacking libxaw7:s390x (2:1.0.16-1) ... 600s Selecting previously unselected package libxi6:s390x. 600s Preparing to unpack .../121-libxi6_2%3a1.8.2-1_s390x.deb ... 600s Unpacking libxi6:s390x (2:1.8.2-1) ... 600s Selecting previously unselected package libzzip-0-13t64:s390x. 600s Preparing to unpack .../122-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ... 600s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 600s Selecting previously unselected package zip. 600s Preparing to unpack .../123-zip_3.0-14ubuntu2_s390x.deb ... 600s Unpacking zip (3.0-14ubuntu2) ... 600s Selecting previously unselected package unzip. 600s Preparing to unpack .../124-unzip_6.0-28ubuntu6_s390x.deb ... 600s Unpacking unzip (6.0-28ubuntu6) ... 600s Selecting previously unselected package xdg-utils. 600s Preparing to unpack .../125-xdg-utils_1.2.1-2ubuntu1_all.deb ... 600s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 600s Selecting previously unselected package r-base-core. 600s Preparing to unpack .../126-r-base-core_4.4.3-1_s390x.deb ... 600s Unpacking r-base-core (4.4.3-1) ... 601s Selecting previously unselected package r-cran-littler. 601s Preparing to unpack .../127-r-cran-littler_0.3.20-2_s390x.deb ... 601s Unpacking r-cran-littler (0.3.20-2) ... 601s Selecting previously unselected package littler. 601s Preparing to unpack .../128-littler_0.3.20-2_all.deb ... 601s Unpacking littler (0.3.20-2) ... 601s Selecting previously unselected package node-bootstrap-sass. 601s Preparing to unpack .../129-node-bootstrap-sass_3.4.3-2_all.deb ... 601s Unpacking node-bootstrap-sass (3.4.3-2) ... 601s Selecting previously unselected package node-html5shiv. 601s Preparing to unpack .../130-node-html5shiv_3.7.3+dfsg-5_all.deb ... 601s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 601s Selecting previously unselected package node-normalize.css. 601s Preparing to unpack .../131-node-normalize.css_8.0.1-5_all.deb ... 601s Unpacking node-normalize.css (8.0.1-5) ... 601s Selecting previously unselected package pandoc-data. 601s Preparing to unpack .../132-pandoc-data_3.1.11.1-3build1_all.deb ... 601s Unpacking pandoc-data (3.1.11.1-3build1) ... 601s Selecting previously unselected package pandoc. 601s Preparing to unpack .../133-pandoc_3.1.11.1+ds-2_s390x.deb ... 601s Unpacking pandoc (3.1.11.1+ds-2) ... 602s Selecting previously unselected package liblzma-dev:s390x. 602s Preparing to unpack .../134-liblzma-dev_5.6.4-1_s390x.deb ... 602s Unpacking liblzma-dev:s390x (5.6.4-1) ... 602s Selecting previously unselected package pkgconf-bin. 602s Preparing to unpack .../135-pkgconf-bin_1.8.1-4_s390x.deb ... 602s Unpacking pkgconf-bin (1.8.1-4) ... 602s Selecting previously unselected package pkgconf:s390x. 602s Preparing to unpack .../136-pkgconf_1.8.1-4_s390x.deb ... 602s Unpacking pkgconf:s390x (1.8.1-4) ... 602s Selecting previously unselected package libtirpc-dev:s390x. 602s Preparing to unpack .../137-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 602s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 602s Selecting previously unselected package r-base-dev. 602s Preparing to unpack .../138-r-base-dev_4.4.3-1_all.deb ... 602s Unpacking r-base-dev (4.4.3-1) ... 602s Selecting previously unselected package pkg-r-autopkgtest. 602s Preparing to unpack .../139-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 602s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 602s Selecting previously unselected package r-bioc-biocgenerics. 602s Preparing to unpack .../140-r-bioc-biocgenerics_0.52.0-2_all.deb ... 602s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 602s Selecting previously unselected package r-bioc-biobase. 602s Preparing to unpack .../141-r-bioc-biobase_2.66.0-2_s390x.deb ... 602s Unpacking r-bioc-biobase (2.66.0-2) ... 602s Selecting previously unselected package r-bioc-s4vectors. 602s Preparing to unpack .../142-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 602s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 602s Selecting previously unselected package r-bioc-iranges. 602s Preparing to unpack .../143-r-bioc-iranges_2.40.1-2_s390x.deb ... 602s Unpacking r-bioc-iranges (2.40.1-2) ... 602s Selecting previously unselected package r-cran-dbi. 602s Preparing to unpack .../144-r-cran-dbi_1.2.3-1_all.deb ... 602s Unpacking r-cran-dbi (1.2.3-1) ... 602s Selecting previously unselected package r-cran-bit. 602s Preparing to unpack .../145-r-cran-bit_4.6.0+dfsg-1_s390x.deb ... 602s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 602s Selecting previously unselected package r-cran-bit64. 602s Preparing to unpack .../146-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ... 602s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 602s Selecting previously unselected package r-cran-rlang. 602s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_s390x.deb ... 602s Unpacking r-cran-rlang (1.1.5-1) ... 602s Selecting previously unselected package r-cran-cli. 602s Preparing to unpack .../148-r-cran-cli_3.6.4-1_s390x.deb ... 602s Unpacking r-cran-cli (3.6.4-1) ... 602s Selecting previously unselected package r-cran-glue. 602s Preparing to unpack .../149-r-cran-glue_1.8.0-1_s390x.deb ... 602s Unpacking r-cran-glue (1.8.0-1) ... 602s Selecting previously unselected package r-cran-lifecycle. 602s Preparing to unpack .../150-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 602s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 602s Selecting previously unselected package r-cran-vctrs. 602s Preparing to unpack .../151-r-cran-vctrs_0.6.5-1_s390x.deb ... 602s Unpacking r-cran-vctrs (0.6.5-1) ... 602s Selecting previously unselected package r-cran-blob. 602s Preparing to unpack .../152-r-cran-blob_1.2.4-1_all.deb ... 602s Unpacking r-cran-blob (1.2.4-1) ... 602s Selecting previously unselected package r-cran-fastmap. 602s Preparing to unpack .../153-r-cran-fastmap_1.2.0-1_s390x.deb ... 602s Unpacking r-cran-fastmap (1.2.0-1) ... 602s Selecting previously unselected package r-cran-cachem. 602s Preparing to unpack .../154-r-cran-cachem_1.1.0-1_s390x.deb ... 602s Unpacking r-cran-cachem (1.1.0-1) ... 602s Selecting previously unselected package r-cran-memoise. 602s Preparing to unpack .../155-r-cran-memoise_2.0.1-1_all.deb ... 602s Unpacking r-cran-memoise (2.0.1-1) ... 602s Selecting previously unselected package r-cran-pkgconfig. 602s Preparing to unpack .../156-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 602s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 602s Selecting previously unselected package r-cran-plogr. 602s Preparing to unpack .../157-r-cran-plogr_0.2.0-3build1_all.deb ... 602s Unpacking r-cran-plogr (0.2.0-3build1) ... 602s Selecting previously unselected package r-cran-cpp11. 602s Preparing to unpack .../158-r-cran-cpp11_0.5.2-1_all.deb ... 602s Unpacking r-cran-cpp11 (0.5.2-1) ... 602s Selecting previously unselected package r-cran-rsqlite. 602s Preparing to unpack .../159-r-cran-rsqlite_2.3.9-1_s390x.deb ... 602s Unpacking r-cran-rsqlite (2.3.9-1) ... 602s Selecting previously unselected package r-cran-curl. 602s Preparing to unpack .../160-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 602s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 602s Selecting previously unselected package r-cran-jsonlite. 602s Preparing to unpack .../161-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 602s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 602s Selecting previously unselected package r-cran-mime. 602s Preparing to unpack .../162-r-cran-mime_0.12-2_s390x.deb ... 602s Unpacking r-cran-mime (0.12-2) ... 602s Selecting previously unselected package r-cran-sys. 602s Preparing to unpack .../163-r-cran-sys_3.4.3-1_s390x.deb ... 602s Unpacking r-cran-sys (3.4.3-1) ... 602s Selecting previously unselected package r-cran-askpass. 602s Preparing to unpack .../164-r-cran-askpass_1.2.1-1_s390x.deb ... 602s Unpacking r-cran-askpass (1.2.1-1) ... 602s Selecting previously unselected package r-cran-openssl. 602s Preparing to unpack .../165-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 602s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 602s Selecting previously unselected package r-cran-r6. 602s Preparing to unpack .../166-r-cran-r6_2.6.1-1_all.deb ... 603s Unpacking r-cran-r6 (2.6.1-1) ... 603s Selecting previously unselected package r-cran-httr. 603s Preparing to unpack .../167-r-cran-httr_1.4.7+dfsg-1_all.deb ... 603s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 603s Selecting previously unselected package r-cran-png. 603s Preparing to unpack .../168-r-cran-png_0.1-8-1build2_s390x.deb ... 603s Unpacking r-cran-png (0.1-8-1build2) ... 603s Selecting previously unselected package r-bioc-zlibbioc. 603s Preparing to unpack .../169-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 603s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 603s Selecting previously unselected package r-bioc-xvector. 603s Preparing to unpack .../170-r-bioc-xvector_0.46.0-2_s390x.deb ... 603s Unpacking r-bioc-xvector (0.46.0-2) ... 603s Selecting previously unselected package r-bioc-ucsc.utils. 603s Preparing to unpack .../171-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 603s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 603s Selecting previously unselected package r-bioc-genomeinfodbdata. 603s Preparing to unpack .../172-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 603s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 603s Selecting previously unselected package r-bioc-genomeinfodb. 603s Preparing to unpack .../173-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 603s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 603s Selecting previously unselected package r-cran-crayon. 603s Preparing to unpack .../174-r-cran-crayon_1.5.3-1_all.deb ... 603s Unpacking r-cran-crayon (1.5.3-1) ... 603s Selecting previously unselected package r-bioc-biostrings. 603s Preparing to unpack .../175-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 603s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 603s Selecting previously unselected package r-bioc-keggrest. 603s Preparing to unpack .../176-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 603s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 603s Selecting previously unselected package r-bioc-annotationdbi. 603s Preparing to unpack .../177-r-bioc-annotationdbi_1.68.0-2_all.deb ... 603s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 603s Selecting previously unselected package r-cran-generics. 603s Preparing to unpack .../178-r-cran-generics_0.1.3-1_all.deb ... 603s Unpacking r-cran-generics (0.1.3-1) ... 603s Selecting previously unselected package r-cran-magrittr. 603s Preparing to unpack .../179-r-cran-magrittr_2.0.3-1_s390x.deb ... 603s Unpacking r-cran-magrittr (2.0.3-1) ... 603s Selecting previously unselected package r-cran-utf8. 603s Preparing to unpack .../180-r-cran-utf8_1.2.4-1_s390x.deb ... 603s Unpacking r-cran-utf8 (1.2.4-1) ... 603s Selecting previously unselected package r-cran-pillar. 603s Preparing to unpack .../181-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 603s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 603s Selecting previously unselected package r-cran-fansi. 603s Preparing to unpack .../182-r-cran-fansi_1.0.5-1_s390x.deb ... 603s Unpacking r-cran-fansi (1.0.5-1) ... 603s Selecting previously unselected package r-cran-tibble. 603s Preparing to unpack .../183-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ... 603s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 603s Selecting previously unselected package r-cran-withr. 603s Preparing to unpack .../184-r-cran-withr_3.0.2+dfsg-1_all.deb ... 603s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 603s Selecting previously unselected package r-cran-tidyselect. 603s Preparing to unpack .../185-r-cran-tidyselect_1.2.1+dfsg-1_s390x.deb ... 603s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 603s Selecting previously unselected package r-cran-dplyr. 603s Preparing to unpack .../186-r-cran-dplyr_1.1.4-4_s390x.deb ... 603s Unpacking r-cran-dplyr (1.1.4-4) ... 603s Selecting previously unselected package r-cran-purrr. 603s Preparing to unpack .../187-r-cran-purrr_1.0.4-1_s390x.deb ... 603s Unpacking r-cran-purrr (1.0.4-1) ... 603s Selecting previously unselected package r-cran-stringi. 603s Preparing to unpack .../188-r-cran-stringi_1.8.4-1build1_s390x.deb ... 603s Unpacking r-cran-stringi (1.8.4-1build1) ... 603s Selecting previously unselected package r-cran-stringr. 603s Preparing to unpack .../189-r-cran-stringr_1.5.1-1_all.deb ... 603s Unpacking r-cran-stringr (1.5.1-1) ... 603s Selecting previously unselected package r-cran-tidyr. 603s Preparing to unpack .../190-r-cran-tidyr_1.3.1-1_s390x.deb ... 603s Unpacking r-cran-tidyr (1.3.1-1) ... 603s Selecting previously unselected package r-cran-dbplyr. 603s Preparing to unpack .../191-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 603s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 603s Selecting previously unselected package r-cran-filelock. 603s Preparing to unpack .../192-r-cran-filelock_1.0.3-1_s390x.deb ... 603s Unpacking r-cran-filelock (1.0.3-1) ... 603s Selecting previously unselected package r-bioc-biocfilecache. 603s Preparing to unpack .../193-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 603s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 603s Selecting previously unselected package r-bioc-biocio. 603s Preparing to unpack .../194-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 603s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 603s Selecting previously unselected package r-cran-formatr. 603s Preparing to unpack .../195-r-cran-formatr_1.14-2_all.deb ... 603s Unpacking r-cran-formatr (1.14-2) ... 603s Selecting previously unselected package r-cran-lambda.r. 603s Preparing to unpack .../196-r-cran-lambda.r_1.2.4-2build1_all.deb ... 603s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 603s Selecting previously unselected package r-cran-futile.options. 603s Preparing to unpack .../197-r-cran-futile.options_1.0.1-3build1_all.deb ... 603s Unpacking r-cran-futile.options (1.0.1-3build1) ... 603s Selecting previously unselected package r-cran-futile.logger. 603s Preparing to unpack .../198-r-cran-futile.logger_1.4.3-4build1_all.deb ... 603s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 603s Selecting previously unselected package r-cran-snow. 603s Preparing to unpack .../199-r-cran-snow_1%3a0.4.4-2_all.deb ... 603s Unpacking r-cran-snow (1:0.4.4-2) ... 603s Selecting previously unselected package r-cran-codetools. 603s Preparing to unpack .../200-r-cran-codetools_0.2-20-1_all.deb ... 603s Unpacking r-cran-codetools (0.2-20-1) ... 603s Selecting previously unselected package r-cran-bh. 603s Preparing to unpack .../201-r-cran-bh_1.84.0-1_all.deb ... 603s Unpacking r-cran-bh (1.84.0-1) ... 603s Selecting previously unselected package r-bioc-biocparallel. 603s Preparing to unpack .../202-r-bioc-biocparallel_1.40.0-2_s390x.deb ... 603s Unpacking r-bioc-biocparallel (1.40.0-2) ... 603s Selecting previously unselected package r-cran-base64enc. 603s Preparing to unpack .../203-r-cran-base64enc_0.1-3-3_s390x.deb ... 603s Unpacking r-cran-base64enc (0.1-3-3) ... 603s Selecting previously unselected package r-cran-digest. 603s Preparing to unpack .../204-r-cran-digest_0.6.37-1_s390x.deb ... 603s Unpacking r-cran-digest (0.6.37-1) ... 603s Selecting previously unselected package r-cran-htmltools. 603s Preparing to unpack .../205-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 603s Unpacking r-cran-htmltools (0.5.8.1-1) ... 603s Selecting previously unselected package r-cran-evaluate. 603s Preparing to unpack .../206-r-cran-evaluate_1.0.3-1_all.deb ... 603s Unpacking r-cran-evaluate (1.0.3-1) ... 603s Selecting previously unselected package r-cran-xfun. 603s Preparing to unpack .../207-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 603s Unpacking r-cran-xfun (0.51+dfsg-1) ... 603s Selecting previously unselected package r-cran-highr. 603s Preparing to unpack .../208-r-cran-highr_0.11+dfsg-1_all.deb ... 603s Unpacking r-cran-highr (0.11+dfsg-1) ... 603s Selecting previously unselected package r-cran-yaml. 603s Preparing to unpack .../209-r-cran-yaml_2.3.10-1_s390x.deb ... 603s Unpacking r-cran-yaml (2.3.10-1) ... 603s Selecting previously unselected package libjs-mathjax. 603s Preparing to unpack .../210-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 603s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 604s Selecting previously unselected package r-cran-knitr. 604s Preparing to unpack .../211-r-cran-knitr_1.49+dfsg-1_all.deb ... 604s Unpacking r-cran-knitr (1.49+dfsg-1) ... 604s Selecting previously unselected package r-cran-jquerylib. 604s Preparing to unpack .../212-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 604s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 604s Selecting previously unselected package r-cran-fs. 604s Preparing to unpack .../213-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 604s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 604s Selecting previously unselected package r-cran-rappdirs. 604s Preparing to unpack .../214-r-cran-rappdirs_0.3.3-1_s390x.deb ... 604s Unpacking r-cran-rappdirs (0.3.3-1) ... 604s Selecting previously unselected package r-cran-sass. 604s Preparing to unpack .../215-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 604s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 604s Selecting previously unselected package r-cran-bslib. 604s Preparing to unpack .../216-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 604s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 604s Selecting previously unselected package r-cran-fontawesome. 604s Preparing to unpack .../217-r-cran-fontawesome_0.5.3-1_all.deb ... 604s Unpacking r-cran-fontawesome (0.5.3-1) ... 604s Selecting previously unselected package r-cran-tinytex. 604s Preparing to unpack .../218-r-cran-tinytex_0.56-1_all.deb ... 604s Unpacking r-cran-tinytex (0.56-1) ... 604s Selecting previously unselected package libjs-modernizr. 604s Preparing to unpack .../219-libjs-modernizr_3.13.0-0.1_all.deb ... 604s Unpacking libjs-modernizr (3.13.0-0.1) ... 604s Selecting previously unselected package r-cran-pkgkitten. 604s Preparing to unpack .../220-r-cran-pkgkitten_0.2.4-1_all.deb ... 604s Unpacking r-cran-pkgkitten (0.2.4-1) ... 604s Selecting previously unselected package r-cran-rcpp. 604s Preparing to unpack .../221-r-cran-rcpp_1.0.14-1_s390x.deb ... 604s Unpacking r-cran-rcpp (1.0.14-1) ... 604s Selecting previously unselected package r-cran-later. 604s Preparing to unpack .../222-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 604s Unpacking r-cran-later (1.4.1+dfsg-1) ... 604s Selecting previously unselected package r-cran-promises. 604s Preparing to unpack .../223-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 604s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 604s Selecting previously unselected package r-cran-httpuv. 604s Preparing to unpack .../224-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 604s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 604s Selecting previously unselected package r-cran-xtable. 604s Preparing to unpack .../225-r-cran-xtable_1%3a1.8-4-2_all.deb ... 604s Unpacking r-cran-xtable (1:1.8-4-2) ... 604s Selecting previously unselected package r-cran-sourcetools. 604s Preparing to unpack .../226-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 604s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 604s Selecting previously unselected package r-cran-commonmark. 604s Preparing to unpack .../227-r-cran-commonmark_1.9.2-2_s390x.deb ... 604s Unpacking r-cran-commonmark (1.9.2-2) ... 604s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 604s Preparing to unpack .../228-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 604s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 604s Selecting previously unselected package r-cran-shiny. 604s Preparing to unpack .../229-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 604s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 604s Selecting previously unselected package r-cran-rmarkdown. 604s Preparing to unpack .../230-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 604s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 604s Selecting previously unselected package r-cran-bookdown. 604s Preparing to unpack .../231-r-cran-bookdown_0.42+dfsg-1_all.deb ... 604s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 604s Selecting previously unselected package r-cran-biocmanager. 604s Preparing to unpack .../232-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 604s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 604s Selecting previously unselected package tex-common. 604s Preparing to unpack .../233-tex-common_6.19_all.deb ... 604s Unpacking tex-common (6.19) ... 604s Selecting previously unselected package t1utils. 604s Preparing to unpack .../234-t1utils_1.41-4build3_s390x.deb ... 604s Unpacking t1utils (1.41-4build3) ... 604s Selecting previously unselected package texlive-binaries. 604s Preparing to unpack .../235-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ... 604s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 605s Selecting previously unselected package texlive-base. 605s Preparing to unpack .../236-texlive-base_2024.20250114-1_all.deb ... 605s Unpacking texlive-base (2024.20250114-1) ... 606s Selecting previously unselected package texlive-latex-base. 606s Preparing to unpack .../237-texlive-latex-base_2024.20250114-1_all.deb ... 606s Unpacking texlive-latex-base (2024.20250114-1) ... 606s Selecting previously unselected package texlive-bibtex-extra. 606s Preparing to unpack .../238-texlive-bibtex-extra_2024.20250114-1_all.deb ... 606s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 609s Selecting previously unselected package r-bioc-biocversion. 609s Preparing to unpack .../239-r-bioc-biocversion_3.20.0-2_all.deb ... 609s Unpacking r-bioc-biocversion (3.20.0-2) ... 609s Selecting previously unselected package r-bioc-biocstyle. 609s Preparing to unpack .../240-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 609s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 609s Selecting previously unselected package r-cran-hms. 609s Preparing to unpack .../241-r-cran-hms_1.1.3-1_all.deb ... 609s Unpacking r-cran-hms (1.1.3-1) ... 609s Selecting previously unselected package r-cran-prettyunits. 609s Preparing to unpack .../242-r-cran-prettyunits_1.2.0-1_all.deb ... 609s Unpacking r-cran-prettyunits (1.2.0-1) ... 609s Selecting previously unselected package r-cran-progress. 609s Preparing to unpack .../243-r-cran-progress_1.2.3-1_all.deb ... 609s Unpacking r-cran-progress (1.2.3-1) ... 609s Selecting previously unselected package r-cran-httr2. 609s Preparing to unpack .../244-r-cran-httr2_1.1.1-1_all.deb ... 609s Unpacking r-cran-httr2 (1.1.1-1) ... 609s Selecting previously unselected package r-cran-xml2. 609s Preparing to unpack .../245-r-cran-xml2_1.3.7-1_s390x.deb ... 609s Unpacking r-cran-xml2 (1.3.7-1) ... 609s Selecting previously unselected package r-bioc-biomart. 609s Preparing to unpack .../246-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 609s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 609s Selecting previously unselected package r-cran-lattice. 609s Preparing to unpack .../247-r-cran-lattice_0.22-6-1_s390x.deb ... 609s Unpacking r-cran-lattice (0.22-6-1) ... 609s Selecting previously unselected package r-cran-matrix. 609s Preparing to unpack .../248-r-cran-matrix_1.7-3-1_s390x.deb ... 609s Unpacking r-cran-matrix (1.7-3-1) ... 609s Selecting previously unselected package r-cran-matrixstats. 609s Preparing to unpack .../249-r-cran-matrixstats_1.5.0-1_s390x.deb ... 609s Unpacking r-cran-matrixstats (1.5.0-1) ... 609s Selecting previously unselected package r-bioc-matrixgenerics. 609s Preparing to unpack .../250-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 609s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 609s Selecting previously unselected package r-cran-abind. 609s Preparing to unpack .../251-r-cran-abind_1.4-8-1_all.deb ... 609s Unpacking r-cran-abind (1.4-8-1) ... 609s Selecting previously unselected package r-bioc-s4arrays. 609s Preparing to unpack .../252-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ... 609s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 609s Selecting previously unselected package r-bioc-sparsearray. 609s Preparing to unpack .../253-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ... 609s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 609s Selecting previously unselected package r-bioc-delayedarray. 609s Preparing to unpack .../254-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ... 609s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 609s Selecting previously unselected package r-bioc-genomicranges. 609s Preparing to unpack .../255-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ... 609s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 609s Selecting previously unselected package r-bioc-summarizedexperiment. 609s Preparing to unpack .../256-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 609s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 609s Selecting previously unselected package r-cran-bitops. 609s Preparing to unpack .../257-r-cran-bitops_1.0-9-1_s390x.deb ... 609s Unpacking r-cran-bitops (1.0-9-1) ... 609s Selecting previously unselected package r-bioc-rhtslib. 609s Preparing to unpack .../258-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ... 609s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 609s Selecting previously unselected package r-bioc-rsamtools. 609s Preparing to unpack .../259-r-bioc-rsamtools_2.22.0+dfsg-2_s390x.deb ... 609s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 609s Selecting previously unselected package r-bioc-genomicalignments. 609s Preparing to unpack .../260-r-bioc-genomicalignments_1.42.0-2_s390x.deb ... 609s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 609s Selecting previously unselected package r-cran-xml. 609s Preparing to unpack .../261-r-cran-xml_3.99-0.18-1_s390x.deb ... 609s Unpacking r-cran-xml (3.99-0.18-1) ... 609s Selecting previously unselected package r-cran-rcurl. 609s Preparing to unpack .../262-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 609s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 609s Selecting previously unselected package r-cran-rjson. 609s Preparing to unpack .../263-r-cran-rjson_0.2.23-1_s390x.deb ... 609s Unpacking r-cran-rjson (0.2.23-1) ... 609s Selecting previously unselected package r-cran-restfulr. 609s Preparing to unpack .../264-r-cran-restfulr_0.0.15-1_s390x.deb ... 609s Unpacking r-cran-restfulr (0.0.15-1) ... 609s Selecting previously unselected package r-bioc-rtracklayer. 609s Preparing to unpack .../265-r-bioc-rtracklayer_1.66.0-2_s390x.deb ... 609s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 609s Selecting previously unselected package r-bioc-genomicfeatures. 609s Preparing to unpack .../266-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 609s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 609s Selecting previously unselected package r-bioc-pwalign. 609s Preparing to unpack .../267-r-bioc-pwalign_1.2.0-2_s390x.deb ... 609s Unpacking r-bioc-pwalign (1.2.0-2) ... 609s Selecting previously unselected package r-cran-hwriter. 609s Preparing to unpack .../268-r-cran-hwriter_1.3.2.1-1_all.deb ... 609s Unpacking r-cran-hwriter (1.3.2.1-1) ... 609s Selecting previously unselected package r-cran-jpeg. 609s Preparing to unpack .../269-r-cran-jpeg_0.1-10-1_s390x.deb ... 609s Unpacking r-cran-jpeg (0.1-10-1) ... 609s Selecting previously unselected package 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610s Setting up tex-common (6.19) ... 610s update-language: texlive-base not installed and configured, doing nothing! 610s Setting up libio-string-perl (1.08-4) ... 610s Setting up zip (3.0-14ubuntu2) ... 610s Setting up libpcre2-32-0:s390x (10.45-1) ... 610s Setting up libblas3:s390x (3.12.1-2) ... 610s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 610s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 610s Setting up libpkgconf3:s390x (1.8.1-4) ... 610s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 610s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 610s Setting up libteckit0:s390x (2.5.12+ds1-1) ... 610s Setting up t1utils (1.41-4build3) ... 610s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ... 610s Setting up libjs-d3 (3.5.17-4) ... 610s Setting up fonts-dejavu-mono (2.37-8) ... 610s Setting up libmpc3:s390x (1.3.1-1build2) ... 610s 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libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 610s Setting up libpng-dev:s390x (1.6.47-1) ... 610s Setting up libpaper-utils (2.2.5-0.3) ... 610s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 610s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 610s Setting up pkgconf:s390x (1.8.1-4) ... 610s Setting up libthai0:s390x (0.1.29-2build1) ... 610s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 610s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ... 610s Setting up pandoc (3.1.11.1+ds-2) ... 610s Setting up liblapack-dev:s390x (3.12.1-2) ... 610s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 610s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 610s Setting up cpp-14 (14.2.0-17ubuntu3) ... 610s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 610s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 610s Setting up 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Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 614s Setting up gfortran (4:14.2.0-1ubuntu1) ... 614s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 614s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 614s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 614s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 614s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 614s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 614s Setting up texlive-bibtex-extra (2024.20250114-1) ... 614s Setting up r-cran-interp (1.1-6-1) ... 614s Setting up r-cran-httr2 (1.1.1-1) ... 614s Setting up r-cran-httr (1.4.7+dfsg-1) ... 614s Setting up r-cran-hms (1.1.3-1) ... 614s Setting up r-cran-memoise (2.0.1-1) ... 614s Setting up r-cran-promises (1.3.2+dfsg-1) ... 614s Setting up r-cran-purrr (1.0.4-1) ... 614s Setting up r-cran-blob (1.2.4-1) ... 614s Setting up r-bioc-xvector (0.46.0-2) ... 614s Setting up r-cran-dplyr (1.1.4-4) ... 614s Setting up r-cran-rsqlite (2.3.9-1) ... 614s Setting up r-cran-progress (1.2.3-1) ... 614s Setting up r-base-dev (4.4.3-1) ... 614s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 614s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 614s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 614s Setting up r-cran-latticeextra (0.6-30-1) ... 614s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 614s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 614s Setting up r-cran-tidyr (1.3.1-1) ... 614s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 614s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 614s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 614s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 614s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 614s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 614s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 614s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 614s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 614s Setting up r-cran-bookdown (0.42+dfsg-1) ... 614s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 614s Setting up r-bioc-pwalign (1.2.0-2) ... 614s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 614s Setting up r-bioc-annotationdbi (1.68.0-2) ... 614s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 614s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 614s Setting up r-bioc-genomicalignments (1.42.0-2) ... 614s Setting up r-bioc-rtracklayer (1.66.0-2) ... 614s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 614s Setting up r-bioc-shortread (1.64.0-3) ... 614s Processing triggers for libc-bin (2.41-1ubuntu2) ... 614s Processing triggers for man-db (2.13.0-1) ... 615s Processing triggers for install-info (7.1.1-1) ... 615s Processing triggers for tex-common (6.19) ... 615s Running updmap-sys. This may take some time... done. 615s Running mktexlsr /var/lib/texmf ... done. 615s Building format(s) --all. 654s This may take some time... done. 655s autopkgtest [17:59:31]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 655s autopkgtest [17:59:31]: test pkg-r-autopkgtest: [----------------------- 655s Test: Try to load the R library ShortRead 655s 655s R version 4.4.3 (2025-02-28) -- "Trophy Case" 655s Copyright (C) 2025 The R Foundation for Statistical Computing 655s Platform: s390x-ibm-linux-gnu 655s 655s R is free software and comes with ABSOLUTELY NO WARRANTY. 655s You are welcome to redistribute it under certain conditions. 655s Type 'license()' or 'licence()' for distribution details. 655s 655s R is a collaborative project with many contributors. 655s Type 'contributors()' for more information and 655s 'citation()' on how to cite R or R packages in publications. 655s 655s Type 'demo()' for some demos, 'help()' for on-line help, or 655s 'help.start()' for an HTML browser interface to help. 655s Type 'q()' to quit R. 655s 655s > library('ShortRead') 655s Loading required package: BiocGenerics 655s 655s Attaching package: ‘BiocGenerics’ 655s 655s The following objects are masked from ‘package:stats’: 655s 655s IQR, mad, sd, var, xtabs 655s 655s The following objects are masked from ‘package:base’: 655s 655s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 655s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 655s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 655s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 655s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 655s table, tapply, union, unique, unsplit, which.max, which.min 655s 655s Loading required package: BiocParallel 655s Loading required package: Biostrings 655s Loading required package: S4Vectors 655s Loading required package: stats4 656s 656s Attaching package: ‘S4Vectors’ 656s 656s The following object is masked from ‘package:utils’: 656s 656s findMatches 656s 656s The following objects are masked from ‘package:base’: 656s 656s expand.grid, I, unname 656s 656s Loading required package: IRanges 656s Loading required package: XVector 657s Loading required package: GenomeInfoDb 657s 657s Attaching package: ‘Biostrings’ 657s 657s The following object is masked from ‘package:base’: 657s 657s strsplit 657s 657s Loading required package: Rsamtools 657s Loading required package: GenomicRanges 658s Loading required package: GenomicAlignments 658s Loading required package: SummarizedExperiment 658s Loading required package: MatrixGenerics 658s Loading required package: matrixStats 658s 658s Attaching package: ‘MatrixGenerics’ 658s 658s The following objects are masked from ‘package:matrixStats’: 658s 658s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 658s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 658s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 658s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 658s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 658s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 658s colWeightedMeans, colWeightedMedians, colWeightedSds, 658s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 658s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 658s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 658s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 658s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 658s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 658s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 658s rowWeightedSds, rowWeightedVars 658s 658s Loading required package: Biobase 658s Welcome to Bioconductor 658s 658s Vignettes contain introductory material; view with 658s 'browseVignettes()'. To cite Bioconductor, see 658s 'citation("Biobase")', and for packages 'citation("pkgname")'. 658s 658s 658s Attaching package: ‘Biobase’ 658s 658s The following object is masked from ‘package:MatrixGenerics’: 658s 658s rowMedians 658s 658s The following objects are masked from ‘package:matrixStats’: 658s 658s anyMissing, rowMedians 658s 662s > 662s > 662s Other tests are currently unsupported! 662s They will be progressively added. 663s autopkgtest [17:59:39]: test pkg-r-autopkgtest: -----------------------] 663s autopkgtest [17:59:39]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 663s pkg-r-autopkgtest PASS 663s autopkgtest [17:59:39]: @@@@@@@@@@@@@@@@@@@@ summary 663s pkg-r-autopkgtest PASS 680s nova [W] Using flock in prodstack6-s390x 680s Creating nova instance adt-plucky-s390x-r-bioc-shortread-20250315-174835-juju-7f2275-prod-proposed-migration-environment-20-c3797bef-b74f-4ccc-8478-2608d8cbe59d from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 680s nova [W] Timed out waiting for 44d02701-34cd-4ead-8b5a-c5b16b7b714d to get deleted.