0s autopkgtest [17:46:21]: starting date and time: 2025-03-15 17:46:21+0000
  0s autopkgtest [17:46:21]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:46:21]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.so46d_7c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rtracklayer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-24.secgroup --name adt-plucky-s390x-r-bioc-rtracklayer-20250315-174621-juju-7f2275-prod-proposed-migration-environment-15-a2971047-bb62-450b-8685-90aa6f8269bb --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
151s autopkgtest [17:48:52]: testbed dpkg architecture: s390x
151s autopkgtest [17:48:52]: testbed apt version: 2.9.33
151s autopkgtest [17:48:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup
151s autopkgtest [17:48:52]: testbed release detected to be: None
152s autopkgtest [17:48:53]: updating testbed package index (apt update)
152s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
153s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
153s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
153s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
153s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
153s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
153s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
153s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
153s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
153s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
153s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
154s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
154s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
154s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
154s Fetched 1073 kB in 2s (679 kB/s)
155s Reading package lists...
155s + lsb_release --codename --short
155s + RELEASE=plucky
155s + cat
155s + [ plucky != trusty ]
155s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
155s Reading package lists...
155s Building dependency tree...
155s Reading state information...
156s Calculating upgrade...
156s Calculating upgrade...
156s The following packages were automatically installed and are no longer required:
156s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
156s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
156s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
156s   linux-tools-6.11.0-8-generic
156s Use 'sudo apt autoremove' to remove them.
156s The following packages will be upgraded:
156s   pinentry-curses python3-jinja2 strace
156s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
156s Need to get 652 kB of archives.
156s After this operation, 27.6 kB of additional disk space will be used.
156s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
156s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
156s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
157s Fetched 652 kB in 1s (712 kB/s)
157s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
157s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
157s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
157s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
157s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
157s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
157s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
157s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
157s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
157s Setting up strace (6.13+ds-1ubuntu1) ...
157s Processing triggers for man-db (2.13.0-1) ...
158s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
158s + /usr/lib/apt/apt-helper analyze-pattern ?true
158s + uname -r
158s + sed s/\./\\./g
158s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
158s + apt list ?obsolete
158s + tail -n+2
158s + cut -d/ -f1
158s + grep -v ^linux-.*6\.14\.0-10-generic.*
158s + obsolete_pkgs=linux-headers-6.11.0-8-generic
158s linux-headers-6.11.0-8
158s linux-modules-6.11.0-8-generic
158s linux-tools-6.11.0-8-generic
158s linux-tools-6.11.0-8
158s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
158s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s Solving dependencies...
158s The following packages will be REMOVED:
158s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
158s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
158s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
158s   linux-tools-6.11.0-8-generic*
158s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
158s After this operation, 167 MB disk space will be freed.
158s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
158s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
158s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
158s Removing libpython3.12t64:s390x (3.12.9-1) ...
158s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
158s Removing libnsl2:s390x (1.3.0-3build3) ...
159s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
159s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
159s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
160s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
160s Processing triggers for libc-bin (2.41-1ubuntu1) ...
160s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
160s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
160s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
160s + grep -q trusty /etc/lsb-release
160s + [ ! -d /usr/share/doc/unattended-upgrades ]
160s + [ ! -d /usr/share/doc/lxd ]
160s + [ ! -d /usr/share/doc/lxd-client ]
160s + [ ! -d /usr/share/doc/snapd ]
160s + type iptables
160s + cat
160s + chmod 755 /etc/rc.local
160s + . /etc/rc.local
160s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
160s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
160s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
160s + uname -m
160s + [ s390x = ppc64le ]
160s + [ -d /run/systemd/system ]
160s + systemd-detect-virt --quiet --vm
160s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
160s + cat
160s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
160s + echo COMPRESS=lz4
160s autopkgtest [17:49:01]: upgrading testbed (apt dist-upgrade and autopurge)
160s Reading package lists...
160s Building dependency tree...
160s Reading state information...
161s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
161s Starting 2 pkgProblemResolver with broken count: 0
161s Done
161s Entering ResolveByKeep
161s 
161s Calculating upgrade...
161s The following packages will be upgraded:
161s   libc-bin libc-dev-bin libc6 libc6-dev locales
161s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
161s Need to get 9512 kB of archives.
161s After this operation, 8192 B of additional disk space will be used.
161s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
163s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
163s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
166s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
166s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
170s Preconfiguring packages ...
170s Fetched 9512 kB in 9s (1066 kB/s)
170s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
170s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
170s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
170s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
170s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
170s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
170s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
171s Setting up libc6:s390x (2.41-1ubuntu2) ...
171s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
171s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
171s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
171s Setting up libc-bin (2.41-1ubuntu2) ...
171s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
171s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
171s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
171s Setting up locales (2.41-1ubuntu2) ...
171s Generating locales (this might take a while)...
172s   en_US.UTF-8... done
172s Generation complete.
172s Setting up libc-dev-bin (2.41-1ubuntu2) ...
172s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
172s Processing triggers for man-db (2.13.0-1) ...
173s Processing triggers for systemd (257.3-1ubuntu3) ...
174s Reading package lists...
174s Building dependency tree...
174s Reading state information...
174s Starting pkgProblemResolver with broken count: 0
174s Starting 2 pkgProblemResolver with broken count: 0
174s Done
174s Solving dependencies...
175s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
175s autopkgtest [17:49:16]: rebooting testbed after setup commands that affected boot
194s autopkgtest [17:49:35]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
196s autopkgtest [17:49:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rtracklayer
202s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rtracklayer 1.66.0-2 (dsc) [2459 B]
202s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rtracklayer 1.66.0-2 (tar) [4113 kB]
202s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rtracklayer 1.66.0-2 (diff) [27.5 kB]
202s gpgv: Signature made Mon Jan 13 14:23:45 2025 UTC
202s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
202s gpgv:                issuer "crusoe@debian.org"
202s gpgv: Can't check signature: No public key
202s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.66.0-2.dsc: no acceptable signature found
202s autopkgtest [17:49:43]: testing package r-bioc-rtracklayer version 1.66.0-2
203s autopkgtest [17:49:44]: build not needed
210s autopkgtest [17:49:51]: test pkg-r-autopkgtest: preparing testbed
210s Reading package lists...
210s Building dependency tree...
210s Reading state information...
210s Starting pkgProblemResolver with broken count: 0
210s Starting 2 pkgProblemResolver with broken count: 0
210s Done
210s The following NEW packages will be installed:
210s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
210s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
210s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
210s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
210s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
210s   libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2
210s   libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libfreetype6
210s   libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3
210s   libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
210s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
210s   liblapack3 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
210s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
210s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
210s   libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
210s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7
210s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
210s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
210s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio
210s   r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
210s   r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata
210s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
210s   r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics
210s   r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
210s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
211s   r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc
211s   r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
211s   r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11
211s   r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr
211s   r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-httr
211s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
211s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
211s   r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl
211s   r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-runit
211s   r-cran-snow r-cran-statmod r-cran-survival r-cran-sys r-cran-vctrs
211s   r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils zip
211s   zlib1g-dev
211s 0 upgraded, 174 newly installed, 0 to remove and 0 not upgraded.
211s Need to get 305 MB of archives.
211s After this operation, 1068 MB of additional disk space will be used.
211s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
211s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
212s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
220s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
220s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
220s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
220s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
220s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
220s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
220s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
223s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
224s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
225s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
238s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
238s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
238s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
238s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
240s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
248s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
248s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
248s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
248s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
248s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
248s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
248s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
248s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
249s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
249s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
249s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
250s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
250s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
251s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
261s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
261s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
261s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
261s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
262s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
262s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
262s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB]
273s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
273s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
273s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
273s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
274s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
274s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
274s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
274s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
274s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
274s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
274s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
274s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
275s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
275s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
275s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
287s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
288s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
288s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
288s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
288s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
288s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
291s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
297s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
297s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
297s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
297s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
297s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
297s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
297s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
297s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
297s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
298s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
298s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
298s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
299s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
299s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
300s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
300s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
300s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
300s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
300s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
302s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
302s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
302s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
302s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
302s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
302s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
303s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
303s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
303s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
303s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
303s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
328s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
328s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
328s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
328s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
328s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
328s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
328s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
329s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
331s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
333s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
335s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB]
336s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB]
336s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB]
337s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
338s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
340s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
340s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
340s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
341s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB]
341s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
341s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
341s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
341s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
341s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB]
341s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
342s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB]
343s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
343s Get:119 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
344s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
344s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
344s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
344s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
344s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
344s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
345s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB]
345s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
345s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
345s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
345s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
357s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
360s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
361s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
371s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB]
371s Get:135 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
375s Get:136 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB]
376s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
377s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB]
379s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
379s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB]
379s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
379s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
379s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
379s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
379s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB]
379s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
379s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB]
381s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB]
383s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB]
383s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB]
384s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB]
388s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
388s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
389s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
390s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
395s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB]
395s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB]
396s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB]
397s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB]
400s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
400s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB]
403s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB]
404s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB]
404s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
404s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB]
404s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB]
410s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-bsgenome all 1.74.0-2 [7001 kB]
417s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB]
426s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genefilter s390x 1.88.0-2 [1239 kB]
427s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
429s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB]
429s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB]
431s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB]
502s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB]
503s Preconfiguring packages ...
503s Fetched 305 MB in 4min 52s (1043 kB/s)
503s Selecting previously unselected package libisl23:s390x.
503s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
503s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
503s Unpacking libisl23:s390x (0.27-1) ...
503s Selecting previously unselected package libmpc3:s390x.
503s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
503s Unpacking libmpc3:s390x (1.3.1-1build2) ...
503s Selecting previously unselected package cpp-14-s390x-linux-gnu.
503s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
503s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
503s Selecting previously unselected package cpp-14.
503s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
503s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
503s Selecting previously unselected package cpp-s390x-linux-gnu.
503s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
503s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
503s Selecting previously unselected package cpp.
503s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
503s Unpacking cpp (4:14.2.0-1ubuntu1) ...
503s Selecting previously unselected package libcc1-0:s390x.
503s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
503s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
503s Selecting previously unselected package libgomp1:s390x.
503s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
503s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
503s Selecting previously unselected package libitm1:s390x.
503s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
503s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
503s Selecting previously unselected package libasan8:s390x.
503s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
503s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
503s Selecting previously unselected package libubsan1:s390x.
503s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
503s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
503s Selecting previously unselected package libgcc-14-dev:s390x.
503s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
503s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
503s Selecting previously unselected package gcc-14-s390x-linux-gnu.
503s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
503s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
504s Selecting previously unselected package gcc-14.
504s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
504s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
504s Selecting previously unselected package gcc-s390x-linux-gnu.
504s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
504s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
504s Selecting previously unselected package gcc.
504s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
504s Unpacking gcc (4:14.2.0-1ubuntu1) ...
504s Selecting previously unselected package libstdc++-14-dev:s390x.
504s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
504s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
504s Selecting previously unselected package g++-14-s390x-linux-gnu.
504s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
504s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
504s Selecting previously unselected package g++-14.
504s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
504s Unpacking g++-14 (14.2.0-17ubuntu3) ...
504s Selecting previously unselected package g++-s390x-linux-gnu.
504s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
504s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
504s Selecting previously unselected package g++.
504s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
504s Unpacking g++ (4:14.2.0-1ubuntu1) ...
504s Selecting previously unselected package build-essential.
504s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
504s Unpacking build-essential (12.10ubuntu1) ...
504s Selecting previously unselected package dctrl-tools.
504s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
504s Unpacking dctrl-tools (2.24-3build3) ...
504s Selecting previously unselected package libfreetype6:s390x.
504s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
504s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
504s Selecting previously unselected package fonts-dejavu-mono.
504s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
504s Unpacking fonts-dejavu-mono (2.37-8) ...
504s Selecting previously unselected package fonts-dejavu-core.
504s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
504s Unpacking fonts-dejavu-core (2.37-8) ...
504s Selecting previously unselected package fontconfig-config.
504s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
504s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
504s Selecting previously unselected package libfontconfig1:s390x.
504s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
504s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
504s Selecting previously unselected package fontconfig.
504s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
504s Unpacking fontconfig (2.15.0-2ubuntu1) ...
504s Selecting previously unselected package libgfortran5:s390x.
504s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
504s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
504s Selecting previously unselected package libgfortran-14-dev:s390x.
504s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
504s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
504s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
504s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
504s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
504s Selecting previously unselected package gfortran-14.
505s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
505s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
505s Selecting previously unselected package gfortran-s390x-linux-gnu.
505s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
505s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
505s Selecting previously unselected package gfortran.
505s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
505s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
505s Selecting previously unselected package icu-devtools.
505s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
505s Unpacking icu-devtools (76.1-1ubuntu2) ...
505s Selecting previously unselected package libblas3:s390x.
505s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
505s Unpacking libblas3:s390x (3.12.1-2) ...
505s Selecting previously unselected package libblas-dev:s390x.
505s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
505s Unpacking libblas-dev:s390x (3.12.1-2) ...
505s Selecting previously unselected package libboost1.83-dev:s390x.
505s Preparing to unpack .../038-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ...
505s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
506s Selecting previously unselected package libboost-dev:s390x.
506s Preparing to unpack .../039-libboost-dev_1.83.0.2ubuntu1_s390x.deb ...
506s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ...
506s Selecting previously unselected package libbz2-dev:s390x.
506s Preparing to unpack .../040-libbz2-dev_1.0.8-6_s390x.deb ...
506s Unpacking libbz2-dev:s390x (1.0.8-6) ...
506s Selecting previously unselected package libpixman-1-0:s390x.
506s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_s390x.deb ...
506s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
506s Selecting previously unselected package libxcb-render0:s390x.
506s Preparing to unpack .../042-libxcb-render0_1.17.0-2_s390x.deb ...
506s Unpacking libxcb-render0:s390x (1.17.0-2) ...
506s Selecting previously unselected package libxcb-shm0:s390x.
506s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_s390x.deb ...
506s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
506s Selecting previously unselected package libxrender1:s390x.
506s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
506s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
506s Selecting previously unselected package libcairo2:s390x.
506s Preparing to unpack .../045-libcairo2_1.18.2-2_s390x.deb ...
506s Unpacking libcairo2:s390x (1.18.2-2) ...
506s Selecting previously unselected package libdatrie1:s390x.
506s Preparing to unpack .../046-libdatrie1_0.2.13-3build1_s390x.deb ...
506s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
506s Selecting previously unselected package libdeflate0:s390x.
506s Preparing to unpack .../047-libdeflate0_1.23-1_s390x.deb ...
506s Unpacking libdeflate0:s390x (1.23-1) ...
506s Selecting previously unselected package libdeflate-dev:s390x.
506s Preparing to unpack .../048-libdeflate-dev_1.23-1_s390x.deb ...
506s Unpacking libdeflate-dev:s390x (1.23-1) ...
506s Selecting previously unselected package libgraphite2-3:s390x.
506s Preparing to unpack .../049-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
506s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
506s Selecting previously unselected package libharfbuzz0b:s390x.
506s Preparing to unpack .../050-libharfbuzz0b_10.2.0-1_s390x.deb ...
506s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
506s Selecting previously unselected package x11-common.
506s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu3_all.deb ...
506s Unpacking x11-common (1:7.7+23ubuntu3) ...
506s Selecting previously unselected package libice6:s390x.
506s Preparing to unpack .../052-libice6_2%3a1.1.1-1_s390x.deb ...
506s Unpacking libice6:s390x (2:1.1.1-1) ...
506s Selecting previously unselected package libicu-dev:s390x.
506s Preparing to unpack .../053-libicu-dev_76.1-1ubuntu2_s390x.deb ...
506s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
506s Selecting previously unselected package libjpeg-turbo8:s390x.
506s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
506s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
506s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
506s Preparing to unpack .../055-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
506s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
506s Selecting previously unselected package libjpeg8:s390x.
506s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_s390x.deb ...
506s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
506s Selecting previously unselected package libjpeg8-dev:s390x.
506s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
506s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
506s Selecting previously unselected package libjpeg-dev:s390x.
506s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
506s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
506s Selecting previously unselected package liblapack3:s390x.
506s Preparing to unpack .../059-liblapack3_3.12.1-2_s390x.deb ...
506s Unpacking liblapack3:s390x (3.12.1-2) ...
506s Selecting previously unselected package liblapack-dev:s390x.
506s Preparing to unpack .../060-liblapack-dev_3.12.1-2_s390x.deb ...
506s Unpacking liblapack-dev:s390x (3.12.1-2) ...
506s Selecting previously unselected package libncurses-dev:s390x.
506s Preparing to unpack .../061-libncurses-dev_6.5+20250216-2_s390x.deb ...
506s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
506s Selecting previously unselected package libthai-data.
506s Preparing to unpack .../062-libthai-data_0.1.29-2build1_all.deb ...
506s Unpacking libthai-data (0.1.29-2build1) ...
506s Selecting previously unselected package libthai0:s390x.
506s Preparing to unpack .../063-libthai0_0.1.29-2build1_s390x.deb ...
506s Unpacking libthai0:s390x (0.1.29-2build1) ...
506s Selecting previously unselected package libpango-1.0-0:s390x.
506s Preparing to unpack .../064-libpango-1.0-0_1.56.2-1_s390x.deb ...
506s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
506s Selecting previously unselected package libpangoft2-1.0-0:s390x.
506s Preparing to unpack .../065-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
506s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
506s Selecting previously unselected package libpangocairo-1.0-0:s390x.
506s Preparing to unpack .../066-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
506s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
506s Selecting previously unselected package libpaper2:s390x.
506s Preparing to unpack .../067-libpaper2_2.2.5-0.3_s390x.deb ...
506s Unpacking libpaper2:s390x (2.2.5-0.3) ...
506s Selecting previously unselected package libpaper-utils.
506s Preparing to unpack .../068-libpaper-utils_2.2.5-0.3_s390x.deb ...
506s Unpacking libpaper-utils (2.2.5-0.3) ...
506s Selecting previously unselected package libpcre2-16-0:s390x.
506s Preparing to unpack .../069-libpcre2-16-0_10.45-1_s390x.deb ...
506s Unpacking libpcre2-16-0:s390x (10.45-1) ...
506s Selecting previously unselected package libpcre2-32-0:s390x.
506s Preparing to unpack .../070-libpcre2-32-0_10.45-1_s390x.deb ...
506s Unpacking libpcre2-32-0:s390x (10.45-1) ...
506s Selecting previously unselected package libpcre2-posix3:s390x.
506s Preparing to unpack .../071-libpcre2-posix3_10.45-1_s390x.deb ...
506s Unpacking libpcre2-posix3:s390x (10.45-1) ...
506s Selecting previously unselected package libpcre2-dev:s390x.
506s Preparing to unpack .../072-libpcre2-dev_10.45-1_s390x.deb ...
506s Unpacking libpcre2-dev:s390x (10.45-1) ...
507s Selecting previously unselected package libpkgconf3:s390x.
507s Preparing to unpack .../073-libpkgconf3_1.8.1-4_s390x.deb ...
507s Unpacking libpkgconf3:s390x (1.8.1-4) ...
507s Selecting previously unselected package zlib1g-dev:s390x.
507s Preparing to unpack .../074-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
507s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
507s Selecting previously unselected package libpng-dev:s390x.
507s Preparing to unpack .../075-libpng-dev_1.6.47-1_s390x.deb ...
507s Unpacking libpng-dev:s390x (1.6.47-1) ...
507s Selecting previously unselected package libreadline-dev:s390x.
507s Preparing to unpack .../076-libreadline-dev_8.2-6_s390x.deb ...
507s Unpacking libreadline-dev:s390x (8.2-6) ...
507s Selecting previously unselected package libsharpyuv0:s390x.
507s Preparing to unpack .../077-libsharpyuv0_1.5.0-0.1_s390x.deb ...
507s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
507s Selecting previously unselected package libsm6:s390x.
507s Preparing to unpack .../078-libsm6_2%3a1.2.4-1_s390x.deb ...
507s Unpacking libsm6:s390x (2:1.2.4-1) ...
507s Selecting previously unselected package libtcl8.6:s390x.
507s Preparing to unpack .../079-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
507s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
507s Selecting previously unselected package libjbig0:s390x.
507s Preparing to unpack .../080-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
507s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
507s Selecting previously unselected package libwebp7:s390x.
507s Preparing to unpack .../081-libwebp7_1.5.0-0.1_s390x.deb ...
507s Unpacking libwebp7:s390x (1.5.0-0.1) ...
507s Selecting previously unselected package libtiff6:s390x.
507s Preparing to unpack .../082-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
507s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
507s Selecting previously unselected package libxft2:s390x.
507s Preparing to unpack .../083-libxft2_2.3.6-1build1_s390x.deb ...
507s Unpacking libxft2:s390x (2.3.6-1build1) ...
507s Selecting previously unselected package libxss1:s390x.
507s Preparing to unpack .../084-libxss1_1%3a1.2.3-1build3_s390x.deb ...
507s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
507s Selecting previously unselected package libtk8.6:s390x.
507s Preparing to unpack .../085-libtk8.6_8.6.16-1_s390x.deb ...
507s Unpacking libtk8.6:s390x (8.6.16-1) ...
507s Selecting previously unselected package libxt6t64:s390x.
507s Preparing to unpack .../086-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
507s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
507s Selecting previously unselected package zip.
507s Preparing to unpack .../087-zip_3.0-14ubuntu2_s390x.deb ...
507s Unpacking zip (3.0-14ubuntu2) ...
507s Selecting previously unselected package unzip.
507s Preparing to unpack .../088-unzip_6.0-28ubuntu6_s390x.deb ...
507s Unpacking unzip (6.0-28ubuntu6) ...
507s Selecting previously unselected package xdg-utils.
507s Preparing to unpack .../089-xdg-utils_1.2.1-2ubuntu1_all.deb ...
507s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
507s Selecting previously unselected package r-base-core.
507s Preparing to unpack .../090-r-base-core_4.4.3-1_s390x.deb ...
507s Unpacking r-base-core (4.4.3-1) ...
507s Selecting previously unselected package liblzma-dev:s390x.
507s Preparing to unpack .../091-liblzma-dev_5.6.4-1_s390x.deb ...
507s Unpacking liblzma-dev:s390x (5.6.4-1) ...
507s Selecting previously unselected package pkgconf-bin.
507s Preparing to unpack .../092-pkgconf-bin_1.8.1-4_s390x.deb ...
507s Unpacking pkgconf-bin (1.8.1-4) ...
507s Selecting previously unselected package pkgconf:s390x.
507s Preparing to unpack .../093-pkgconf_1.8.1-4_s390x.deb ...
507s Unpacking pkgconf:s390x (1.8.1-4) ...
507s Selecting previously unselected package libtirpc-dev:s390x.
507s Preparing to unpack .../094-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
507s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
507s Selecting previously unselected package r-base-dev.
507s Preparing to unpack .../095-r-base-dev_4.4.3-1_all.deb ...
507s Unpacking r-base-dev (4.4.3-1) ...
507s Selecting previously unselected package pkg-r-autopkgtest.
507s Preparing to unpack .../096-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
507s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
507s Selecting previously unselected package r-bioc-biocgenerics.
507s Preparing to unpack .../097-r-bioc-biocgenerics_0.52.0-2_all.deb ...
507s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
507s Selecting previously unselected package r-bioc-biobase.
507s Preparing to unpack .../098-r-bioc-biobase_2.66.0-2_s390x.deb ...
507s Unpacking r-bioc-biobase (2.66.0-2) ...
507s Selecting previously unselected package r-bioc-s4vectors.
507s Preparing to unpack .../099-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ...
507s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
507s Selecting previously unselected package r-bioc-iranges.
507s Preparing to unpack .../100-r-bioc-iranges_2.40.1-2_s390x.deb ...
507s Unpacking r-bioc-iranges (2.40.1-2) ...
507s Selecting previously unselected package r-cran-dbi.
507s Preparing to unpack .../101-r-cran-dbi_1.2.3-1_all.deb ...
507s Unpacking r-cran-dbi (1.2.3-1) ...
507s Selecting previously unselected package r-cran-bit.
507s Preparing to unpack .../102-r-cran-bit_4.6.0+dfsg-1_s390x.deb ...
507s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
507s Selecting previously unselected package r-cran-bit64.
507s Preparing to unpack .../103-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ...
507s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ...
507s Selecting previously unselected package r-cran-rlang.
507s Preparing to unpack .../104-r-cran-rlang_1.1.5-1_s390x.deb ...
507s Unpacking r-cran-rlang (1.1.5-1) ...
507s Selecting previously unselected package r-cran-cli.
507s Preparing to unpack .../105-r-cran-cli_3.6.4-1_s390x.deb ...
507s Unpacking r-cran-cli (3.6.4-1) ...
507s Selecting previously unselected package r-cran-glue.
507s Preparing to unpack .../106-r-cran-glue_1.8.0-1_s390x.deb ...
507s Unpacking r-cran-glue (1.8.0-1) ...
507s Selecting previously unselected package r-cran-lifecycle.
507s Preparing to unpack .../107-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
507s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
507s Selecting previously unselected package r-cran-vctrs.
507s Preparing to unpack .../108-r-cran-vctrs_0.6.5-1_s390x.deb ...
507s Unpacking r-cran-vctrs (0.6.5-1) ...
507s Selecting previously unselected package r-cran-blob.
507s Preparing to unpack .../109-r-cran-blob_1.2.4-1_all.deb ...
507s Unpacking r-cran-blob (1.2.4-1) ...
507s Selecting previously unselected package r-cran-fastmap.
507s Preparing to unpack .../110-r-cran-fastmap_1.2.0-1_s390x.deb ...
507s Unpacking r-cran-fastmap (1.2.0-1) ...
507s Selecting previously unselected package r-cran-cachem.
507s Preparing to unpack .../111-r-cran-cachem_1.1.0-1_s390x.deb ...
507s Unpacking r-cran-cachem (1.1.0-1) ...
507s Selecting previously unselected package r-cran-memoise.
507s Preparing to unpack .../112-r-cran-memoise_2.0.1-1_all.deb ...
507s Unpacking r-cran-memoise (2.0.1-1) ...
507s Selecting previously unselected package r-cran-pkgconfig.
507s Preparing to unpack .../113-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
507s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
507s Selecting previously unselected package r-cran-plogr.
507s Preparing to unpack .../114-r-cran-plogr_0.2.0-3build1_all.deb ...
507s Unpacking r-cran-plogr (0.2.0-3build1) ...
507s Selecting previously unselected package r-cran-cpp11.
507s Preparing to unpack .../115-r-cran-cpp11_0.5.2-1_all.deb ...
507s Unpacking r-cran-cpp11 (0.5.2-1) ...
508s Selecting previously unselected package r-cran-rsqlite.
508s Preparing to unpack .../116-r-cran-rsqlite_2.3.9-1_s390x.deb ...
508s Unpacking r-cran-rsqlite (2.3.9-1) ...
508s Selecting previously unselected package r-cran-curl.
508s Preparing to unpack .../117-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ...
508s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
508s Selecting previously unselected package r-cran-jsonlite.
508s Preparing to unpack .../118-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
508s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
508s Selecting previously unselected package r-cran-mime.
508s Preparing to unpack .../119-r-cran-mime_0.12-2_s390x.deb ...
508s Unpacking r-cran-mime (0.12-2) ...
508s Selecting previously unselected package r-cran-sys.
508s Preparing to unpack .../120-r-cran-sys_3.4.3-1_s390x.deb ...
508s Unpacking r-cran-sys (3.4.3-1) ...
508s Selecting previously unselected package r-cran-askpass.
508s Preparing to unpack .../121-r-cran-askpass_1.2.1-1_s390x.deb ...
508s Unpacking r-cran-askpass (1.2.1-1) ...
508s Selecting previously unselected package r-cran-openssl.
508s Preparing to unpack .../122-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ...
508s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
508s Selecting previously unselected package r-cran-r6.
508s Preparing to unpack .../123-r-cran-r6_2.6.1-1_all.deb ...
508s Unpacking r-cran-r6 (2.6.1-1) ...
508s Selecting previously unselected package r-cran-httr.
508s Preparing to unpack .../124-r-cran-httr_1.4.7+dfsg-1_all.deb ...
508s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
508s Selecting previously unselected package r-cran-png.
508s Preparing to unpack .../125-r-cran-png_0.1-8-1build2_s390x.deb ...
508s Unpacking r-cran-png (0.1-8-1build2) ...
508s Selecting previously unselected package r-bioc-zlibbioc.
508s Preparing to unpack .../126-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
508s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
508s Selecting previously unselected package r-bioc-xvector.
508s Preparing to unpack .../127-r-bioc-xvector_0.46.0-2_s390x.deb ...
508s Unpacking r-bioc-xvector (0.46.0-2) ...
508s Selecting previously unselected package r-bioc-ucsc.utils.
508s Preparing to unpack .../128-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
508s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
508s Selecting previously unselected package r-bioc-genomeinfodbdata.
508s Preparing to unpack .../129-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
508s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
508s Selecting previously unselected package r-bioc-genomeinfodb.
508s Preparing to unpack .../130-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
508s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
508s Selecting previously unselected package r-cran-crayon.
508s Preparing to unpack .../131-r-cran-crayon_1.5.3-1_all.deb ...
508s Unpacking r-cran-crayon (1.5.3-1) ...
508s Selecting previously unselected package r-bioc-biostrings.
508s Preparing to unpack .../132-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ...
508s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
508s Selecting previously unselected package r-bioc-keggrest.
508s Preparing to unpack .../133-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ...
508s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ...
508s Selecting previously unselected package r-bioc-annotationdbi.
508s Preparing to unpack .../134-r-bioc-annotationdbi_1.68.0-2_all.deb ...
508s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
508s Selecting previously unselected package r-cran-xml.
508s Preparing to unpack .../135-r-cran-xml_3.99-0.18-1_s390x.deb ...
508s Unpacking r-cran-xml (3.99-0.18-1) ...
508s Selecting previously unselected package r-cran-xtable.
508s Preparing to unpack .../136-r-cran-xtable_1%3a1.8-4-2_all.deb ...
508s Unpacking r-cran-xtable (1:1.8-4-2) ...
508s Selecting previously unselected package r-bioc-annotate.
508s Preparing to unpack .../137-r-bioc-annotate_1.84.0+dfsg-2_all.deb ...
508s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ...
508s Selecting previously unselected package r-bioc-biocio.
508s Preparing to unpack .../138-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
508s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
508s Selecting previously unselected package r-cran-formatr.
508s Preparing to unpack .../139-r-cran-formatr_1.14-2_all.deb ...
508s Unpacking r-cran-formatr (1.14-2) ...
508s Selecting previously unselected package r-cran-lambda.r.
508s Preparing to unpack .../140-r-cran-lambda.r_1.2.4-2build1_all.deb ...
508s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
508s Selecting previously unselected package r-cran-futile.options.
508s Preparing to unpack .../141-r-cran-futile.options_1.0.1-3build1_all.deb ...
508s Unpacking r-cran-futile.options (1.0.1-3build1) ...
508s Selecting previously unselected package r-cran-futile.logger.
508s Preparing to unpack .../142-r-cran-futile.logger_1.4.3-4build1_all.deb ...
508s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
508s Selecting previously unselected package r-cran-snow.
508s Preparing to unpack .../143-r-cran-snow_1%3a0.4.4-2_all.deb ...
508s Unpacking r-cran-snow (1:0.4.4-2) ...
508s Selecting previously unselected package r-cran-codetools.
508s Preparing to unpack .../144-r-cran-codetools_0.2-20-1_all.deb ...
508s Unpacking r-cran-codetools (0.2-20-1) ...
508s Selecting previously unselected package r-cran-bh.
508s Preparing to unpack .../145-r-cran-bh_1.84.0-1_all.deb ...
508s Unpacking r-cran-bh (1.84.0-1) ...
508s Selecting previously unselected package r-bioc-biocparallel.
508s Preparing to unpack .../146-r-bioc-biocparallel_1.40.0-2_s390x.deb ...
508s Unpacking r-bioc-biocparallel (1.40.0-2) ...
508s Selecting previously unselected package r-bioc-genomicranges.
508s Preparing to unpack .../147-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ...
508s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
508s Selecting previously unselected package r-cran-bitops.
508s Preparing to unpack .../148-r-cran-bitops_1.0-9-1_s390x.deb ...
508s Unpacking r-cran-bitops (1.0-9-1) ...
508s Selecting previously unselected package r-bioc-rhtslib.
508s Preparing to unpack .../149-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ...
508s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
508s Selecting previously unselected package r-bioc-rsamtools.
508s Preparing to unpack .../150-r-bioc-rsamtools_2.22.0+dfsg-2_s390x.deb ...
508s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ...
508s Selecting previously unselected package r-cran-matrixstats.
508s Preparing to unpack .../151-r-cran-matrixstats_1.5.0-1_s390x.deb ...
508s Unpacking r-cran-matrixstats (1.5.0-1) ...
508s Selecting previously unselected package r-bioc-matrixgenerics.
508s Preparing to unpack .../152-r-bioc-matrixgenerics_1.18.1-1_all.deb ...
508s Unpacking r-bioc-matrixgenerics (1.18.1-1) ...
508s Selecting previously unselected package r-cran-lattice.
508s Preparing to unpack .../153-r-cran-lattice_0.22-6-1_s390x.deb ...
508s Unpacking r-cran-lattice (0.22-6-1) ...
509s Selecting previously unselected package r-cran-matrix.
509s Preparing to unpack .../154-r-cran-matrix_1.7-3-1_s390x.deb ...
509s Unpacking r-cran-matrix (1.7-3-1) ...
509s Selecting previously unselected package r-cran-abind.
509s Preparing to unpack .../155-r-cran-abind_1.4-8-1_all.deb ...
509s Unpacking r-cran-abind (1.4-8-1) ...
509s Selecting previously unselected package r-bioc-s4arrays.
509s Preparing to unpack .../156-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ...
509s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
509s Selecting previously unselected package r-bioc-sparsearray.
509s Preparing to unpack .../157-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ...
509s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ...
509s Selecting previously unselected package r-bioc-delayedarray.
509s Preparing to unpack .../158-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ...
509s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
509s Selecting previously unselected package r-bioc-summarizedexperiment.
509s Preparing to unpack .../159-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ...
509s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
509s Selecting previously unselected package r-bioc-genomicalignments.
509s Preparing to unpack .../160-r-bioc-genomicalignments_1.42.0-2_s390x.deb ...
509s Unpacking r-bioc-genomicalignments (1.42.0-2) ...
509s Selecting previously unselected package r-cran-rcurl.
509s Preparing to unpack .../161-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ...
509s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
509s Selecting previously unselected package r-cran-rjson.
509s Preparing to unpack .../162-r-cran-rjson_0.2.23-1_s390x.deb ...
509s Unpacking r-cran-rjson (0.2.23-1) ...
509s Selecting previously unselected package r-cran-yaml.
509s Preparing to unpack .../163-r-cran-yaml_2.3.10-1_s390x.deb ...
509s Unpacking r-cran-yaml (2.3.10-1) ...
509s Selecting previously unselected package r-cran-restfulr.
509s Preparing to unpack .../164-r-cran-restfulr_0.0.15-1_s390x.deb ...
509s Unpacking r-cran-restfulr (0.0.15-1) ...
509s Selecting previously unselected package r-bioc-rtracklayer.
509s Preparing to unpack .../165-r-bioc-rtracklayer_1.66.0-2_s390x.deb ...
509s Unpacking r-bioc-rtracklayer (1.66.0-2) ...
509s Selecting previously unselected package r-bioc-bsgenome.
509s Preparing to unpack .../166-r-bioc-bsgenome_1.74.0-2_all.deb ...
509s Unpacking r-bioc-bsgenome (1.74.0-2) ...
509s Selecting previously unselected package r-cran-survival.
509s Preparing to unpack .../167-r-cran-survival_3.8-3-1_s390x.deb ...
509s Unpacking r-cran-survival (3.8-3-1) ...
509s Selecting previously unselected package r-bioc-genefilter.
509s Preparing to unpack .../168-r-bioc-genefilter_1.88.0-2_s390x.deb ...
509s Unpacking r-bioc-genefilter (1.88.0-2) ...
509s Selecting previously unselected package r-bioc-genomicfeatures.
509s Preparing to unpack .../169-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ...
509s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
509s Selecting previously unselected package r-cran-statmod.
509s Preparing to unpack .../170-r-cran-statmod_1.5.0-1_s390x.deb ...
509s Unpacking r-cran-statmod (1.5.0-1) ...
509s Selecting previously unselected package r-bioc-limma.
509s Preparing to unpack .../171-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ...
509s Unpacking r-bioc-limma (3.62.2+dfsg-1) ...
509s Selecting previously unselected package r-bioc-org.hs.eg.db.
509s Preparing to unpack .../172-r-bioc-org.hs.eg.db_3.20.0-3_all.deb ...
509s Unpacking r-bioc-org.hs.eg.db (3.20.0-3) ...
510s Selecting previously unselected package r-cran-runit.
510s Preparing to unpack .../173-r-cran-runit_0.4.33-1_all.deb ...
510s Unpacking r-cran-runit (0.4.33-1) ...
510s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
510s Setting up libpixman-1-0:s390x (0.44.0-3) ...
510s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
510s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
510s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
510s Setting up libdatrie1:s390x (0.2.13-3build1) ...
510s Setting up libxcb-render0:s390x (1.17.0-2) ...
510s Setting up unzip (6.0-28ubuntu6) ...
510s Setting up x11-common (1:7.7+23ubuntu3) ...
511s Setting up libdeflate0:s390x (1.23-1) ...
511s Setting up libxcb-shm0:s390x (1.17.0-2) ...
511s Setting up libreadline-dev:s390x (8.2-6) ...
511s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
511s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
511s Setting up libpcre2-16-0:s390x (10.45-1) ...
511s Setting up zip (3.0-14ubuntu2) ...
511s Setting up libpcre2-32-0:s390x (10.45-1) ...
511s Setting up libblas3:s390x (3.12.1-2) ...
511s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
511s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
511s Setting up libpkgconf3:s390x (1.8.1-4) ...
511s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
511s Setting up fonts-dejavu-mono (2.37-8) ...
511s Setting up libmpc3:s390x (1.3.1-1build2) ...
511s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
511s Setting up icu-devtools (76.1-1ubuntu2) ...
511s Setting up fonts-dejavu-core (2.37-8) ...
511s Setting up pkgconf-bin (1.8.1-4) ...
511s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
511s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
511s Setting up libwebp7:s390x (1.5.0-0.1) ...
511s Setting up liblzma-dev:s390x (5.6.4-1) ...
511s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
511s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
511s Setting up libpcre2-posix3:s390x (10.45-1) ...
511s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
511s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
511s Setting up libthai-data (0.1.29-2build1) ...
511s Setting up libxss1:s390x (1:1.2.3-1build3) ...
511s Setting up libpaper2:s390x (2.2.5-0.3) ...
511s Setting up libisl23:s390x (0.27-1) ...
511s Setting up libdeflate-dev:s390x (1.23-1) ...
511s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
511s Setting up xdg-utils (1.2.1-2ubuntu1) ...
511s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
511s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
511s Setting up libblas-dev:s390x (3.12.1-2) ...
511s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
511s Setting up dctrl-tools (2.24-3build3) ...
511s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
511s Setting up libbz2-dev:s390x (1.0.8-6) ...
511s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
511s Setting up libice6:s390x (2:1.1.1-1) ...
511s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
511s Setting up liblapack3:s390x (3.12.1-2) ...
511s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
511s Setting up libpcre2-dev:s390x (10.45-1) ...
511s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
511s Setting up libpng-dev:s390x (1.6.47-1) ...
511s Setting up libpaper-utils (2.2.5-0.3) ...
511s Setting up pkgconf:s390x (1.8.1-4) ...
511s Setting up libthai0:s390x (0.1.29-2build1) ...
511s Setting up liblapack-dev:s390x (3.12.1-2) ...
511s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
511s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
511s Setting up cpp-14 (14.2.0-17ubuntu3) ...
511s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
511s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
511s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
511s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
511s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
511s Setting up libsm6:s390x (2:1.2.4-1) ...
511s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
511s Setting up fontconfig (2.15.0-2ubuntu1) ...
513s Regenerating fonts cache... done.
513s Setting up libxft2:s390x (2.3.6-1build1) ...
513s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
513s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
513s Setting up libtk8.6:s390x (8.6.16-1) ...
513s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
513s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
513s Setting up libcairo2:s390x (1.18.2-2) ...
513s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
513s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
513s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
513s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
513s Setting up cpp (4:14.2.0-1ubuntu1) ...
513s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
513s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
513s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
513s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
513s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
513s Setting up gcc-14 (14.2.0-17ubuntu3) ...
513s Setting up r-base-core (4.4.3-1) ...
513s Creating config file /etc/R/Renviron with new version
513s Setting up r-cran-crayon (1.5.3-1) ...
513s Setting up r-cran-futile.options (1.0.1-3build1) ...
513s Setting up r-cran-lattice (0.22-6-1) ...
513s Setting up r-cran-formatr (1.14-2) ...
513s Setting up r-cran-xml (3.99-0.18-1) ...
513s Setting up r-cran-statmod (1.5.0-1) ...
513s Setting up g++-14 (14.2.0-17ubuntu3) ...
513s Setting up r-cran-rjson (0.2.23-1) ...
513s Setting up r-cran-r6 (2.6.1-1) ...
513s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
513s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
513s Setting up r-cran-bh (1.84.0-1) ...
513s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
513s Setting up r-cran-codetools (0.2-20-1) ...
513s Setting up r-bioc-biocgenerics (0.52.0-2) ...
513s Setting up r-cran-rlang (1.1.5-1) ...
513s Setting up r-cran-matrixstats (1.5.0-1) ...
513s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
513s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
513s Setting up r-cran-sys (3.4.3-1) ...
513s Setting up r-cran-plogr (0.2.0-3build1) ...
513s Setting up r-cran-mime (0.12-2) ...
513s Setting up r-cran-abind (1.4-8-1) ...
513s Setting up r-cran-yaml (2.3.10-1) ...
513s Setting up r-cran-lambda.r (1.2.4-2build1) ...
513s Setting up r-cran-dbi (1.2.3-1) ...
513s Setting up r-cran-snow (1:0.4.4-2) ...
513s Setting up r-cran-glue (1.8.0-1) ...
513s Setting up r-cran-bit (4.6.0+dfsg-1) ...
513s Setting up r-cran-xtable (1:1.8-4-2) ...
513s Setting up r-cran-cli (3.6.4-1) ...
513s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
513s Setting up r-cran-bitops (1.0-9-1) ...
513s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
513s Setting up gcc (4:14.2.0-1ubuntu1) ...
513s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
513s Setting up r-cran-askpass (1.2.1-1) ...
513s Setting up r-cran-fastmap (1.2.0-1) ...
513s Setting up r-cran-png (0.1-8-1build2) ...
513s Setting up r-bioc-biobase (2.66.0-2) ...
513s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
513s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
513s Setting up r-cran-cpp11 (0.5.2-1) ...
513s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
513s Setting up r-cran-runit (0.4.33-1) ...
513s Setting up r-cran-futile.logger (1.4.3-4build1) ...
513s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
513s Setting up r-cran-matrix (1.7-3-1) ...
513s Setting up g++ (4:14.2.0-1ubuntu1) ...
513s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
513s Setting up r-cran-cachem (1.1.0-1) ...
513s Setting up build-essential (12.10ubuntu1) ...
513s Setting up r-bioc-iranges (2.40.1-2) ...
513s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
513s Setting up r-cran-restfulr (0.0.15-1) ...
513s Setting up r-cran-vctrs (0.6.5-1) ...
513s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
513s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
513s Setting up r-bioc-biocparallel (1.40.0-2) ...
513s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
513s Setting up r-cran-survival (3.8-3-1) ...
513s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
513s Setting up gfortran (4:14.2.0-1ubuntu1) ...
513s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
513s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
513s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
513s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
513s Setting up r-cran-httr (1.4.7+dfsg-1) ...
513s Setting up r-cran-memoise (2.0.1-1) ...
513s Setting up r-cran-blob (1.2.4-1) ...
513s Setting up r-bioc-xvector (0.46.0-2) ...
513s Setting up r-cran-rsqlite (2.3.9-1) ...
513s Setting up r-base-dev (4.4.3-1) ...
513s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
513s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
513s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
513s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
513s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
513s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
513s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
513s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
513s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
513s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
513s Setting up r-bioc-annotationdbi (1.68.0-2) ...
513s Setting up r-bioc-annotate (1.84.0+dfsg-2) ...
513s Setting up r-bioc-genefilter (1.88.0-2) ...
513s Setting up r-bioc-genomicalignments (1.42.0-2) ...
513s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ...
513s Setting up r-bioc-rtracklayer (1.66.0-2) ...
513s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
513s Setting up r-bioc-bsgenome (1.74.0-2) ...
513s Processing triggers for libc-bin (2.41-1ubuntu2) ...
513s Processing triggers for man-db (2.13.0-1) ...
514s Processing triggers for install-info (7.1.1-1) ...
515s autopkgtest [17:54:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
515s autopkgtest [17:54:56]: test pkg-r-autopkgtest: [-----------------------
515s Test: Try to load the R library rtracklayer
516s 
516s R version 4.4.3 (2025-02-28) -- "Trophy Case"
516s Copyright (C) 2025 The R Foundation for Statistical Computing
516s Platform: s390x-ibm-linux-gnu
516s 
516s R is free software and comes with ABSOLUTELY NO WARRANTY.
516s You are welcome to redistribute it under certain conditions.
516s Type 'license()' or 'licence()' for distribution details.
516s 
516s R is a collaborative project with many contributors.
516s Type 'contributors()' for more information and
516s 'citation()' on how to cite R or R packages in publications.
516s 
516s Type 'demo()' for some demos, 'help()' for on-line help, or
516s 'help.start()' for an HTML browser interface to help.
516s Type 'q()' to quit R.
516s 
516s > library('rtracklayer')
516s Loading required package: GenomicRanges
516s Loading required package: stats4
516s Loading required package: BiocGenerics
516s 
516s Attaching package: ‘BiocGenerics’
516s 
516s The following objects are masked from ‘package:stats’:
516s 
516s     IQR, mad, sd, var, xtabs
516s 
516s The following objects are masked from ‘package:base’:
516s 
516s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
516s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
516s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
516s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
516s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
516s     table, tapply, union, unique, unsplit, which.max, which.min
516s 
516s Loading required package: S4Vectors
516s 
516s Attaching package: ‘S4Vectors’
516s 
516s The following object is masked from ‘package:utils’:
516s 
516s     findMatches
516s 
516s The following objects are masked from ‘package:base’:
516s 
516s     expand.grid, I, unname
516s 
516s Loading required package: IRanges
517s Loading required package: GenomeInfoDb
523s > 
523s > 
523s Other tests are currently unsupported!
523s They will be progressively added.
524s autopkgtest [17:55:05]: test pkg-r-autopkgtest: -----------------------]
524s autopkgtest [17:55:05]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
524s pkg-r-autopkgtest    PASS
524s autopkgtest [17:55:05]: @@@@@@@@@@@@@@@@@@@@ summary
524s pkg-r-autopkgtest    PASS
530s nova [W] Using flock in prodstack6-s390x
530s Creating nova instance adt-plucky-s390x-r-bioc-rtracklayer-20250315-174621-juju-7f2275-prod-proposed-migration-environment-15-a2971047-bb62-450b-8685-90aa6f8269bb from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
530s nova [W] Timed out waiting for b2fd15af-76ab-4323-9f0a-3078fffe3609 to get deleted.