0s autopkgtest [10:52:00]: starting date and time: 2025-03-15 10:52:00+0000
  0s autopkgtest [10:52:00]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [10:52:00]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gmawgols/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rsubread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-19.secgroup --name adt-plucky-s390x-r-bioc-rsubread-20250315-105200-juju-7f2275-prod-proposed-migration-environment-20-3e22765c-fb34-40d7-a7a5-e24d867f1354 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
114s autopkgtest [10:53:54]: testbed dpkg architecture: s390x
114s autopkgtest [10:53:54]: testbed apt version: 2.9.33
115s autopkgtest [10:53:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup
115s autopkgtest [10:53:55]: testbed release detected to be: None
115s autopkgtest [10:53:55]: updating testbed package index (apt update)
116s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
116s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
116s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
116s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
116s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
116s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB]
116s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB]
116s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [80.7 kB]
116s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1852 B]
116s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
116s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [335 kB]
117s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [14.4 kB]
117s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
117s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [328 B]
117s Fetched 1034 kB in 1s (1010 kB/s)
117s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...
118s Calculating upgrade...
118s The following packages were automatically installed and are no longer required:
118s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
118s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
118s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
118s   linux-tools-6.11.0-8-generic
118s Use 'sudo apt autoremove' to remove them.
118s The following packages will be upgraded:
118s   python3-jinja2 strace
118s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s Need to get 609 kB of archives.
118s After this operation, 27.6 kB of additional disk space will be used.
118s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
119s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
119s Fetched 609 kB in 1s (919 kB/s)
119s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
119s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
119s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
119s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
119s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
119s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
120s Setting up strace (6.13+ds-1ubuntu1) ...
120s Processing triggers for man-db (2.13.0-1) ...
120s Reading package lists...
120s Building dependency tree...
120s Reading state information...
120s Solving dependencies...
121s The following packages will be REMOVED:
121s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
121s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
121s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
121s   linux-tools-6.11.0-8-generic*
121s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
121s After this operation, 167 MB disk space will be freed.
121s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
121s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
121s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
121s Removing libpython3.12t64:s390x (3.12.9-1) ...
121s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
121s Removing libnsl2:s390x (1.3.0-3build3) ...
121s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
121s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
121s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
122s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
122s Processing triggers for libc-bin (2.41-1ubuntu1) ...
122s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
122s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
122s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
122s autopkgtest [10:54:02]: upgrading testbed (apt dist-upgrade and autopurge)
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
123s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
123s Starting 2 pkgProblemResolver with broken count: 0
123s Done
123s Entering ResolveByKeep
123s 
123s Calculating upgrade...
123s The following packages will be upgraded:
123s   libc-bin libc-dev-bin libc6 libc6-dev locales
123s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Need to get 9512 kB of archives.
123s After this operation, 8192 B of additional disk space will be used.
123s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
124s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
124s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
125s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
125s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
126s Preconfiguring packages ...
126s Fetched 9512 kB in 3s (3401 kB/s)
126s (Reading database ... 
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(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
126s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
126s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
126s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
126s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
126s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
126s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
127s Setting up libc6:s390x (2.41-1ubuntu2) ...
127s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
127s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
127s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
127s Setting up libc-bin (2.41-1ubuntu2) ...
127s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
127s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
127s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
127s Setting up locales (2.41-1ubuntu2) ...
127s Generating locales (this might take a while)...
128s   en_US.UTF-8... done
128s Generation complete.
128s Setting up libc-dev-bin (2.41-1ubuntu2) ...
128s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
128s Processing triggers for man-db (2.13.0-1) ...
129s Processing triggers for systemd (257.3-1ubuntu3) ...
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Starting pkgProblemResolver with broken count: 0
130s Starting 2 pkgProblemResolver with broken count: 0
130s Done
130s Solving dependencies...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s autopkgtest [10:54:10]: rebooting testbed after setup commands that affected boot
149s autopkgtest [10:54:29]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
151s autopkgtest [10:54:31]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsubread
159s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsubread 2.20.0-2 (dsc) [2120 B]
159s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsubread 2.20.0-2 (tar) [13.6 MB]
159s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsubread 2.20.0-2 (diff) [4324 B]
159s gpgv: Signature made Sat Jan 11 17:13:01 2025 UTC
159s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
159s gpgv:                issuer "crusoe@debian.org"
159s gpgv: Can't check signature: No public key
159s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsubread_2.20.0-2.dsc: no acceptable signature found
159s autopkgtest [10:54:39]: testing package r-bioc-rsubread version 2.20.0-2
159s autopkgtest [10:54:39]: build not needed
166s autopkgtest [10:54:46]: test pkg-r-autopkgtest: preparing testbed
167s Reading package lists...
167s Building dependency tree...
167s Reading state information...
167s Starting pkgProblemResolver with broken count: 0
167s Starting 2 pkgProblemResolver with broken count: 0
167s Done
167s The following NEW packages will be installed:
167s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
167s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
167s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
167s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
167s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
167s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
167s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
167s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
167s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
167s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
167s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
167s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
167s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
167s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
167s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
167s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
167s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-rsubread r-cran-lattice
167s   r-cran-matrix unzip x11-common xdg-utils zip zlib1g-dev
167s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded.
167s Need to get 140 MB of archives.
167s After this operation, 410 MB of additional disk space will be used.
167s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
168s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
168s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
173s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
173s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
173s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
173s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
173s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
173s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
173s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
175s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
175s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
176s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
184s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
184s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
184s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
184s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
185s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
190s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
190s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
190s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
190s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
190s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
190s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
190s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
191s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
191s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
191s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
191s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
191s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
192s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
192s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
196s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
196s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
196s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
196s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
196s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
197s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
197s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
197s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
197s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
197s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
197s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
197s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
197s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
197s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
197s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
197s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
197s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
197s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
197s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
197s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
203s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
203s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
203s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
203s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
203s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
203s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
205s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
208s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
208s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
208s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
208s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB]
208s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB]
208s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB]
208s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
208s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
208s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
209s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
209s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
209s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
209s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
209s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
210s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
210s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
210s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
210s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
210s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
211s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
211s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
211s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
211s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
211s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
211s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
211s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
211s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
212s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
212s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
212s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
225s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
225s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
225s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
225s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
225s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
225s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
225s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
225s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
225s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
227s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsubread s390x 2.20.0-2 [10.8 MB]
231s Preconfiguring packages ...
231s Fetched 140 MB in 1min 3s (2201 kB/s)
231s Selecting previously unselected package libisl23:s390x.
231s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
231s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
231s Unpacking libisl23:s390x (0.27-1) ...
231s Selecting previously unselected package libmpc3:s390x.
231s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
231s Unpacking libmpc3:s390x (1.3.1-1build2) ...
231s Selecting previously unselected package cpp-14-s390x-linux-gnu.
231s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
231s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
231s Selecting previously unselected package cpp-14.
231s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
231s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
231s Selecting previously unselected package cpp-s390x-linux-gnu.
231s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
231s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
231s Selecting previously unselected package cpp.
231s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
231s Unpacking cpp (4:14.2.0-1ubuntu1) ...
231s Selecting previously unselected package libcc1-0:s390x.
231s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
231s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
231s Selecting previously unselected package libgomp1:s390x.
231s Preparing to unpack .../07-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
231s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
231s Selecting previously unselected package libitm1:s390x.
231s Preparing to unpack .../08-libitm1_15-20250222-0ubuntu1_s390x.deb ...
231s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
231s Selecting previously unselected package libasan8:s390x.
231s Preparing to unpack .../09-libasan8_15-20250222-0ubuntu1_s390x.deb ...
231s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
231s Selecting previously unselected package libubsan1:s390x.
231s Preparing to unpack .../10-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
231s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
231s Selecting previously unselected package libgcc-14-dev:s390x.
231s Preparing to unpack .../11-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
231s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
232s Selecting previously unselected package gcc-14-s390x-linux-gnu.
232s Preparing to unpack .../12-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
232s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
232s Selecting previously unselected package gcc-14.
232s Preparing to unpack .../13-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
232s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
232s Selecting previously unselected package gcc-s390x-linux-gnu.
232s Preparing to unpack .../14-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
232s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
232s Selecting previously unselected package gcc.
232s Preparing to unpack .../15-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
232s Unpacking gcc (4:14.2.0-1ubuntu1) ...
232s Selecting previously unselected package libstdc++-14-dev:s390x.
232s Preparing to unpack .../16-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
232s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
232s Selecting previously unselected package g++-14-s390x-linux-gnu.
232s Preparing to unpack .../17-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
232s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
232s Selecting previously unselected package g++-14.
232s Preparing to unpack .../18-g++-14_14.2.0-17ubuntu3_s390x.deb ...
232s Unpacking g++-14 (14.2.0-17ubuntu3) ...
232s Selecting previously unselected package g++-s390x-linux-gnu.
232s Preparing to unpack .../19-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
232s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
232s Selecting previously unselected package g++.
232s Preparing to unpack .../20-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
232s Unpacking g++ (4:14.2.0-1ubuntu1) ...
232s Selecting previously unselected package build-essential.
232s Preparing to unpack .../21-build-essential_12.10ubuntu1_s390x.deb ...
232s Unpacking build-essential (12.10ubuntu1) ...
232s Selecting previously unselected package dctrl-tools.
232s Preparing to unpack .../22-dctrl-tools_2.24-3build3_s390x.deb ...
232s Unpacking dctrl-tools (2.24-3build3) ...
232s Selecting previously unselected package libfreetype6:s390x.
232s Preparing to unpack .../23-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
232s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
232s Selecting previously unselected package fonts-dejavu-mono.
232s Preparing to unpack .../24-fonts-dejavu-mono_2.37-8_all.deb ...
232s Unpacking fonts-dejavu-mono (2.37-8) ...
232s Selecting previously unselected package fonts-dejavu-core.
232s Preparing to unpack .../25-fonts-dejavu-core_2.37-8_all.deb ...
232s Unpacking fonts-dejavu-core (2.37-8) ...
232s Selecting previously unselected package fontconfig-config.
232s Preparing to unpack .../26-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
232s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
232s Selecting previously unselected package libfontconfig1:s390x.
232s Preparing to unpack .../27-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
232s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
232s Selecting previously unselected package fontconfig.
232s Preparing to unpack .../28-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
232s Unpacking fontconfig (2.15.0-2ubuntu1) ...
232s Selecting previously unselected package libgfortran5:s390x.
232s Preparing to unpack .../29-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
232s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
232s Selecting previously unselected package libgfortran-14-dev:s390x.
232s Preparing to unpack .../30-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
232s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
232s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
232s Preparing to unpack .../31-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
232s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
233s Selecting previously unselected package gfortran-14.
233s Preparing to unpack .../32-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
233s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
233s Selecting previously unselected package gfortran-s390x-linux-gnu.
233s Preparing to unpack .../33-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
233s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
233s Selecting previously unselected package gfortran.
233s Preparing to unpack .../34-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
233s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
233s Selecting previously unselected package icu-devtools.
233s Preparing to unpack .../35-icu-devtools_76.1-1ubuntu2_s390x.deb ...
233s Unpacking icu-devtools (76.1-1ubuntu2) ...
233s Selecting previously unselected package libblas3:s390x.
233s Preparing to unpack .../36-libblas3_3.12.1-2_s390x.deb ...
233s Unpacking libblas3:s390x (3.12.1-2) ...
233s Selecting previously unselected package libblas-dev:s390x.
233s Preparing to unpack .../37-libblas-dev_3.12.1-2_s390x.deb ...
233s Unpacking libblas-dev:s390x (3.12.1-2) ...
233s Selecting previously unselected package libbz2-dev:s390x.
233s Preparing to unpack .../38-libbz2-dev_1.0.8-6_s390x.deb ...
233s Unpacking libbz2-dev:s390x (1.0.8-6) ...
233s Selecting previously unselected package libpixman-1-0:s390x.
233s Preparing to unpack .../39-libpixman-1-0_0.44.0-3_s390x.deb ...
233s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
233s Selecting previously unselected package libxcb-render0:s390x.
233s Preparing to unpack .../40-libxcb-render0_1.17.0-2_s390x.deb ...
233s Unpacking libxcb-render0:s390x (1.17.0-2) ...
233s Selecting previously unselected package libxcb-shm0:s390x.
233s Preparing to unpack .../41-libxcb-shm0_1.17.0-2_s390x.deb ...
233s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
233s Selecting previously unselected package libxrender1:s390x.
233s Preparing to unpack .../42-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
233s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
233s Selecting previously unselected package libcairo2:s390x.
233s Preparing to unpack .../43-libcairo2_1.18.2-2_s390x.deb ...
233s Unpacking libcairo2:s390x (1.18.2-2) ...
233s Selecting previously unselected package libdatrie1:s390x.
233s Preparing to unpack .../44-libdatrie1_0.2.13-3build1_s390x.deb ...
233s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
233s Selecting previously unselected package libdeflate0:s390x.
233s Preparing to unpack .../45-libdeflate0_1.23-1_s390x.deb ...
233s Unpacking libdeflate0:s390x (1.23-1) ...
233s Selecting previously unselected package libdeflate-dev:s390x.
233s Preparing to unpack .../46-libdeflate-dev_1.23-1_s390x.deb ...
233s Unpacking libdeflate-dev:s390x (1.23-1) ...
233s Selecting previously unselected package libgraphite2-3:s390x.
233s Preparing to unpack .../47-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
233s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
233s Selecting previously unselected package libharfbuzz0b:s390x.
233s Preparing to unpack .../48-libharfbuzz0b_10.2.0-1_s390x.deb ...
233s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
233s Selecting previously unselected package x11-common.
233s Preparing to unpack .../49-x11-common_1%3a7.7+23ubuntu3_all.deb ...
233s Unpacking x11-common (1:7.7+23ubuntu3) ...
233s Selecting previously unselected package libice6:s390x.
233s Preparing to unpack .../50-libice6_2%3a1.1.1-1_s390x.deb ...
233s Unpacking libice6:s390x (2:1.1.1-1) ...
233s Selecting previously unselected package libicu-dev:s390x.
233s Preparing to unpack .../51-libicu-dev_76.1-1ubuntu2_s390x.deb ...
233s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
233s Selecting previously unselected package libjpeg-turbo8:s390x.
233s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
233s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
233s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
233s Preparing to unpack .../53-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
233s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
233s Selecting previously unselected package libjpeg8:s390x.
233s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_s390x.deb ...
233s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
233s Selecting previously unselected package libjpeg8-dev:s390x.
233s Preparing to unpack .../55-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
233s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
233s Selecting previously unselected package libjpeg-dev:s390x.
233s Preparing to unpack .../56-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
233s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
233s Selecting previously unselected package liblapack3:s390x.
233s Preparing to unpack .../57-liblapack3_3.12.1-2_s390x.deb ...
233s Unpacking liblapack3:s390x (3.12.1-2) ...
233s Selecting previously unselected package liblapack-dev:s390x.
233s Preparing to unpack .../58-liblapack-dev_3.12.1-2_s390x.deb ...
233s Unpacking liblapack-dev:s390x (3.12.1-2) ...
233s Selecting previously unselected package libncurses-dev:s390x.
233s Preparing to unpack .../59-libncurses-dev_6.5+20250216-2_s390x.deb ...
233s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
233s Selecting previously unselected package libthai-data.
233s Preparing to unpack .../60-libthai-data_0.1.29-2build1_all.deb ...
233s Unpacking libthai-data (0.1.29-2build1) ...
233s Selecting previously unselected package libthai0:s390x.
233s Preparing to unpack .../61-libthai0_0.1.29-2build1_s390x.deb ...
233s Unpacking libthai0:s390x (0.1.29-2build1) ...
233s Selecting previously unselected package libpango-1.0-0:s390x.
233s Preparing to unpack .../62-libpango-1.0-0_1.56.1-1_s390x.deb ...
233s Unpacking libpango-1.0-0:s390x (1.56.1-1) ...
233s Selecting previously unselected package libpangoft2-1.0-0:s390x.
233s Preparing to unpack .../63-libpangoft2-1.0-0_1.56.1-1_s390x.deb ...
233s Unpacking libpangoft2-1.0-0:s390x (1.56.1-1) ...
233s Selecting previously unselected package libpangocairo-1.0-0:s390x.
233s Preparing to unpack .../64-libpangocairo-1.0-0_1.56.1-1_s390x.deb ...
233s Unpacking libpangocairo-1.0-0:s390x (1.56.1-1) ...
233s Selecting previously unselected package libpaper2:s390x.
233s Preparing to unpack .../65-libpaper2_2.2.5-0.3_s390x.deb ...
233s Unpacking libpaper2:s390x (2.2.5-0.3) ...
233s Selecting previously unselected package libpaper-utils.
233s Preparing to unpack .../66-libpaper-utils_2.2.5-0.3_s390x.deb ...
233s Unpacking libpaper-utils (2.2.5-0.3) ...
233s Selecting previously unselected package libpcre2-16-0:s390x.
233s Preparing to unpack .../67-libpcre2-16-0_10.45-1_s390x.deb ...
233s Unpacking libpcre2-16-0:s390x (10.45-1) ...
233s Selecting previously unselected package libpcre2-32-0:s390x.
233s Preparing to unpack .../68-libpcre2-32-0_10.45-1_s390x.deb ...
233s Unpacking libpcre2-32-0:s390x (10.45-1) ...
233s Selecting previously unselected package libpcre2-posix3:s390x.
233s Preparing to unpack .../69-libpcre2-posix3_10.45-1_s390x.deb ...
233s Unpacking libpcre2-posix3:s390x (10.45-1) ...
233s Selecting previously unselected package libpcre2-dev:s390x.
233s Preparing to unpack .../70-libpcre2-dev_10.45-1_s390x.deb ...
233s Unpacking libpcre2-dev:s390x (10.45-1) ...
233s Selecting previously unselected package libpkgconf3:s390x.
233s Preparing to unpack .../71-libpkgconf3_1.8.1-4_s390x.deb ...
233s Unpacking libpkgconf3:s390x (1.8.1-4) ...
233s Selecting previously unselected package zlib1g-dev:s390x.
233s Preparing to unpack .../72-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
233s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
233s Selecting previously unselected package libpng-dev:s390x.
233s Preparing to unpack .../73-libpng-dev_1.6.47-1_s390x.deb ...
233s Unpacking libpng-dev:s390x (1.6.47-1) ...
233s Selecting previously unselected package libreadline-dev:s390x.
233s Preparing to unpack .../74-libreadline-dev_8.2-6_s390x.deb ...
233s Unpacking libreadline-dev:s390x (8.2-6) ...
233s Selecting previously unselected package libsharpyuv0:s390x.
233s Preparing to unpack .../75-libsharpyuv0_1.5.0-0.1_s390x.deb ...
233s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
233s Selecting previously unselected package libsm6:s390x.
233s Preparing to unpack .../76-libsm6_2%3a1.2.4-1_s390x.deb ...
233s Unpacking libsm6:s390x (2:1.2.4-1) ...
233s Selecting previously unselected package libtcl8.6:s390x.
234s Preparing to unpack .../77-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
234s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
234s Selecting previously unselected package libjbig0:s390x.
234s Preparing to unpack .../78-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
234s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
234s Selecting previously unselected package libwebp7:s390x.
234s Preparing to unpack .../79-libwebp7_1.5.0-0.1_s390x.deb ...
234s Unpacking libwebp7:s390x (1.5.0-0.1) ...
234s Selecting previously unselected package libtiff6:s390x.
234s Preparing to unpack .../80-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
234s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
234s Selecting previously unselected package libxft2:s390x.
234s Preparing to unpack .../81-libxft2_2.3.6-1build1_s390x.deb ...
234s Unpacking libxft2:s390x (2.3.6-1build1) ...
234s Selecting previously unselected package libxss1:s390x.
234s Preparing to unpack .../82-libxss1_1%3a1.2.3-1build3_s390x.deb ...
234s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
234s Selecting previously unselected package libtk8.6:s390x.
234s Preparing to unpack .../83-libtk8.6_8.6.16-1_s390x.deb ...
234s Unpacking libtk8.6:s390x (8.6.16-1) ...
234s Selecting previously unselected package libxt6t64:s390x.
234s Preparing to unpack .../84-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
234s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
234s Selecting previously unselected package zip.
234s Preparing to unpack .../85-zip_3.0-14ubuntu2_s390x.deb ...
234s Unpacking zip (3.0-14ubuntu2) ...
234s Selecting previously unselected package unzip.
234s Preparing to unpack .../86-unzip_6.0-28ubuntu6_s390x.deb ...
234s Unpacking unzip (6.0-28ubuntu6) ...
234s Selecting previously unselected package xdg-utils.
234s Preparing to unpack .../87-xdg-utils_1.2.1-2ubuntu1_all.deb ...
234s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
234s Selecting previously unselected package r-base-core.
234s Preparing to unpack .../88-r-base-core_4.4.3-1_s390x.deb ...
234s Unpacking r-base-core (4.4.3-1) ...
234s Selecting previously unselected package liblzma-dev:s390x.
234s Preparing to unpack .../89-liblzma-dev_5.6.4-1_s390x.deb ...
234s Unpacking liblzma-dev:s390x (5.6.4-1) ...
234s Selecting previously unselected package pkgconf-bin.
234s Preparing to unpack .../90-pkgconf-bin_1.8.1-4_s390x.deb ...
234s Unpacking pkgconf-bin (1.8.1-4) ...
234s Selecting previously unselected package pkgconf:s390x.
234s Preparing to unpack .../91-pkgconf_1.8.1-4_s390x.deb ...
234s Unpacking pkgconf:s390x (1.8.1-4) ...
234s Selecting previously unselected package libtirpc-dev:s390x.
234s Preparing to unpack .../92-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
234s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
234s Selecting previously unselected package r-base-dev.
234s Preparing to unpack .../93-r-base-dev_4.4.3-1_all.deb ...
234s Unpacking r-base-dev (4.4.3-1) ...
234s Selecting previously unselected package pkg-r-autopkgtest.
234s Preparing to unpack .../94-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
234s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
234s Selecting previously unselected package r-bioc-biocgenerics.
234s Preparing to unpack .../95-r-bioc-biocgenerics_0.52.0-2_all.deb ...
234s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
234s Selecting previously unselected package r-cran-lattice.
234s Preparing to unpack .../96-r-cran-lattice_0.22-6-1_s390x.deb ...
234s Unpacking r-cran-lattice (0.22-6-1) ...
234s Selecting previously unselected package r-cran-matrix.
234s Preparing to unpack .../97-r-cran-matrix_1.7-3-1_s390x.deb ...
234s Unpacking r-cran-matrix (1.7-3-1) ...
234s Selecting previously unselected package r-bioc-rsubread.
234s Preparing to unpack .../98-r-bioc-rsubread_2.20.0-2_s390x.deb ...
234s Unpacking r-bioc-rsubread (2.20.0-2) ...
234s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
234s Setting up libpixman-1-0:s390x (0.44.0-3) ...
234s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
234s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
234s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
234s Setting up libdatrie1:s390x (0.2.13-3build1) ...
234s Setting up libxcb-render0:s390x (1.17.0-2) ...
234s Setting up unzip (6.0-28ubuntu6) ...
234s Setting up x11-common (1:7.7+23ubuntu3) ...
235s Setting up libdeflate0:s390x (1.23-1) ...
235s Setting up libxcb-shm0:s390x (1.17.0-2) ...
235s Setting up libreadline-dev:s390x (8.2-6) ...
235s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
235s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
235s Setting up libpcre2-16-0:s390x (10.45-1) ...
235s Setting up zip (3.0-14ubuntu2) ...
235s Setting up libpcre2-32-0:s390x (10.45-1) ...
235s Setting up libblas3:s390x (3.12.1-2) ...
235s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
235s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
235s Setting up libpkgconf3:s390x (1.8.1-4) ...
235s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
235s Setting up fonts-dejavu-mono (2.37-8) ...
235s Setting up libmpc3:s390x (1.3.1-1build2) ...
235s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
235s Setting up icu-devtools (76.1-1ubuntu2) ...
235s Setting up fonts-dejavu-core (2.37-8) ...
235s Setting up pkgconf-bin (1.8.1-4) ...
235s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
235s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
235s Setting up libwebp7:s390x (1.5.0-0.1) ...
235s Setting up liblzma-dev:s390x (5.6.4-1) ...
235s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
235s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
235s Setting up libpcre2-posix3:s390x (10.45-1) ...
235s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
235s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
235s Setting up libthai-data (0.1.29-2build1) ...
235s Setting up libxss1:s390x (1:1.2.3-1build3) ...
235s Setting up libpaper2:s390x (2.2.5-0.3) ...
235s Setting up libisl23:s390x (0.27-1) ...
235s Setting up libdeflate-dev:s390x (1.23-1) ...
235s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
235s Setting up xdg-utils (1.2.1-2ubuntu1) ...
235s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
235s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
235s Setting up libblas-dev:s390x (3.12.1-2) ...
235s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
235s Setting up dctrl-tools (2.24-3build3) ...
235s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
235s Setting up libbz2-dev:s390x (1.0.8-6) ...
235s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
235s Setting up libice6:s390x (2:1.1.1-1) ...
235s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
235s Setting up liblapack3:s390x (3.12.1-2) ...
235s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
235s Setting up libpcre2-dev:s390x (10.45-1) ...
235s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
235s Setting up libpng-dev:s390x (1.6.47-1) ...
235s Setting up libpaper-utils (2.2.5-0.3) ...
235s Setting up pkgconf:s390x (1.8.1-4) ...
235s Setting up libthai0:s390x (0.1.29-2build1) ...
235s Setting up liblapack-dev:s390x (3.12.1-2) ...
235s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
235s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
235s Setting up cpp-14 (14.2.0-17ubuntu3) ...
235s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
235s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
235s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
235s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
235s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
235s Setting up libsm6:s390x (2:1.2.4-1) ...
235s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
235s Setting up fontconfig (2.15.0-2ubuntu1) ...
237s Regenerating fonts cache... done.
237s Setting up libxft2:s390x (2.3.6-1build1) ...
237s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
237s Setting up libtk8.6:s390x (8.6.16-1) ...
237s Setting up libpango-1.0-0:s390x (1.56.1-1) ...
237s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
237s Setting up libcairo2:s390x (1.18.2-2) ...
237s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
237s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
237s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
237s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
237s Setting up cpp (4:14.2.0-1ubuntu1) ...
237s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ...
237s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ...
237s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
237s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
237s Setting up gcc-14 (14.2.0-17ubuntu3) ...
237s Setting up r-base-core (4.4.3-1) ...
237s Creating config file /etc/R/Renviron with new version
237s Setting up r-cran-lattice (0.22-6-1) ...
237s Setting up g++-14 (14.2.0-17ubuntu3) ...
237s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
237s Setting up r-bioc-biocgenerics (0.52.0-2) ...
237s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
237s Setting up gcc (4:14.2.0-1ubuntu1) ...
237s Setting up r-cran-matrix (1.7-3-1) ...
237s Setting up g++ (4:14.2.0-1ubuntu1) ...
237s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
237s Setting up r-bioc-rsubread (2.20.0-2) ...
237s Setting up build-essential (12.10ubuntu1) ...
237s Setting up gfortran (4:14.2.0-1ubuntu1) ...
237s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
237s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
237s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
237s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
237s Setting up r-base-dev (4.4.3-1) ...
237s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
237s Processing triggers for libc-bin (2.41-1ubuntu2) ...
237s Processing triggers for man-db (2.13.0-1) ...
238s Processing triggers for install-info (7.1.1-1) ...
239s autopkgtest [10:55:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
239s autopkgtest [10:55:59]: test pkg-r-autopkgtest: [-----------------------
239s Test: Try to load the R library Rsubread
239s 
239s R version 4.4.3 (2025-02-28) -- "Trophy Case"
239s Copyright (C) 2025 The R Foundation for Statistical Computing
239s Platform: s390x-ibm-linux-gnu
239s 
239s R is free software and comes with ABSOLUTELY NO WARRANTY.
239s You are welcome to redistribute it under certain conditions.
239s Type 'license()' or 'licence()' for distribution details.
239s 
239s R is a collaborative project with many contributors.
239s Type 'contributors()' for more information and
239s 'citation()' on how to cite R or R packages in publications.
239s 
239s Type 'demo()' for some demos, 'help()' for on-line help, or
239s 'help.start()' for an HTML browser interface to help.
239s Type 'q()' to quit R.
239s 
239s > library('Rsubread')
240s > 
240s > 
240s Other tests are currently unsupported!
240s They will be progressively added.
241s autopkgtest [10:56:01]: test pkg-r-autopkgtest: -----------------------]
241s pkg-r-autopkgtest    PASS
241s autopkgtest [10:56:01]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
241s autopkgtest [10:56:01]: @@@@@@@@@@@@@@@@@@@@ summary
241s pkg-r-autopkgtest    PASS
258s nova [W] Using flock in prodstack6-s390x
258s flock: timeout while waiting to get lock
258s Creating nova instance adt-plucky-s390x-r-bioc-rsubread-20250315-105200-juju-7f2275-prod-proposed-migration-environment-20-3e22765c-fb34-40d7-a7a5-e24d867f1354 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
258s nova [W] Timed out waiting for ee0be595-04e3-4e0f-85bb-50aab4ac16ff to get deleted.