0s autopkgtest [17:03:20]: starting date and time: 2025-03-15 17:03:20+0000
  0s autopkgtest [17:03:20]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:03:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g72tmya1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-30.secgroup --name adt-plucky-s390x-r-bioc-rsamtools-20250315-170320-juju-7f2275-prod-proposed-migration-environment-2-36ef9fd7-65d7-4fb8-bd8b-997682706248 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
132s autopkgtest [17:05:32]: testbed dpkg architecture: s390x
132s autopkgtest [17:05:32]: testbed apt version: 2.9.33
133s autopkgtest [17:05:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup
133s autopkgtest [17:05:33]: testbed release detected to be: None
134s autopkgtest [17:05:34]: updating testbed package index (apt update)
134s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
134s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
134s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
134s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
134s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
134s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
135s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
135s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
135s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
135s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
135s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
135s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
135s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
135s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
136s Fetched 1073 kB in 2s (628 kB/s)
136s Reading package lists...
137s Reading package lists...
137s Building dependency tree...
137s Reading state information...
137s Calculating upgrade...
137s Calculating upgrade...
137s The following packages were automatically installed and are no longer required:
137s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
137s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
137s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
137s   linux-tools-6.11.0-8-generic
137s Use 'sudo apt autoremove' to remove them.
137s The following packages will be upgraded:
137s   pinentry-curses python3-jinja2 strace
137s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
137s Need to get 652 kB of archives.
137s After this operation, 27.6 kB of additional disk space will be used.
137s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
138s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
138s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
138s Fetched 652 kB in 1s (646 kB/s)
139s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
139s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
139s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
139s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
139s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
139s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
139s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
139s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
139s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
139s Setting up strace (6.13+ds-1ubuntu1) ...
139s Processing triggers for man-db (2.13.0-1) ...
139s Reading package lists...
139s Building dependency tree...
139s Reading state information...
140s Solving dependencies...
140s The following packages will be REMOVED:
140s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
140s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
140s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
140s   linux-tools-6.11.0-8-generic*
140s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
140s After this operation, 167 MB disk space will be freed.
140s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
140s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
140s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
140s Removing libpython3.12t64:s390x (3.12.9-1) ...
140s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
140s Removing libnsl2:s390x (1.3.0-3build3) ...
140s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
140s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
140s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
141s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s Processing triggers for libc-bin (2.41-1ubuntu1) ...
141s (Reading database ... 
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(Reading database ... 56328 files and directories currently installed.)
141s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
141s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s autopkgtest [17:05:41]: upgrading testbed (apt dist-upgrade and autopurge)
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
142s Entering ResolveByKeep
142s 
142s Calculating upgrade...
142s The following packages will be upgraded:
142s   libc-bin libc-dev-bin libc6 libc6-dev locales
142s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
142s Need to get 9512 kB of archives.
142s After this operation, 8192 B of additional disk space will be used.
142s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
145s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
145s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
147s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
148s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
153s Preconfiguring packages ...
153s Fetched 9512 kB in 10s (922 kB/s)
153s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
153s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Setting up libc6:s390x (2.41-1ubuntu2) ...
153s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
153s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Setting up libc-bin (2.41-1ubuntu2) ...
153s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
153s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
153s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Setting up locales (2.41-1ubuntu2) ...
154s Generating locales (this might take a while)...
155s   en_US.UTF-8... done
155s Generation complete.
155s Setting up libc-dev-bin (2.41-1ubuntu2) ...
155s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
155s Processing triggers for man-db (2.13.0-1) ...
155s Processing triggers for systemd (257.3-1ubuntu3) ...
156s Reading package lists...
156s Building dependency tree...
156s Reading state information...
156s Starting pkgProblemResolver with broken count: 0
156s Starting 2 pkgProblemResolver with broken count: 0
156s Done
157s Solving dependencies...
157s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
157s autopkgtest [17:05:57]: rebooting testbed after setup commands that affected boot
177s autopkgtest [17:06:17]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
179s autopkgtest [17:06:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools
184s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (dsc) [2381 B]
184s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (tar) [2469 kB]
184s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (diff) [7200 B]
184s gpgv: Signature made Sun Jan 12 19:28:33 2025 UTC
184s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
184s gpgv:                issuer "crusoe@debian.org"
184s gpgv: Can't check signature: No public key
184s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.22.0+dfsg-2.dsc: no acceptable signature found
184s autopkgtest [17:06:24]: testing package r-bioc-rsamtools version 2.22.0+dfsg-2
185s autopkgtest [17:06:25]: build not needed
188s autopkgtest [17:06:28]: test pkg-r-autopkgtest: preparing testbed
188s Reading package lists...
188s Building dependency tree...
188s Reading state information...
188s Starting pkgProblemResolver with broken count: 0
188s Starting 2 pkgProblemResolver with broken count: 0
188s Done
189s The following NEW packages will be installed:
189s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
189s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
189s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
189s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
189s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
189s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
189s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
189s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
189s   libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev
189s   libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
189s   libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
189s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
189s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
189s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
189s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
189s   libjs-popper.js libjs-prettify libjs-sifter.js
189s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
189s   liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libmpfi0
189s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
189s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
189s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
189s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
189s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
189s   libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2
189s   libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler
189s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
189s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
189s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio
189s   r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings
189s   r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
189s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
189s   r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-pwalign
189s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
189s   r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray
189s   r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc
189s   r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager
189s   r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown
189s   r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark
189s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir
189s   r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome
189s   r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options
189s   r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr
189s   r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite
189s   r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
189s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
189s   r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
189s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises
189s   r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
189s   r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown
189s   r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow
189s   r-cran-sourcetools r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr
189s   r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common
189s   texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip
189s   x11-common xdg-utils zip zlib1g-dev
189s 0 upgraded, 258 newly installed, 0 to remove and 0 not upgraded.
189s Need to get 435 MB of archives.
189s After this operation, 1431 MB of additional disk space will be used.
189s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
190s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
190s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
201s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
201s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
201s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
201s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
201s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
201s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
201s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
205s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
206s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
207s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
229s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
230s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
230s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
230s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
233s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
246s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
246s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
246s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
246s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
246s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
246s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
246s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
247s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
247s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
248s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
248s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
248s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
248s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
248s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
254s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
256s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
257s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
257s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
267s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
267s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
267s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
267s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
268s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B]
268s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
268s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
268s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
268s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
268s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
268s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB]
279s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
279s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
279s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
279s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
279s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
279s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
279s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
280s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
280s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
280s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
280s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
280s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
281s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
281s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
281s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
293s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
293s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
293s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
293s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
293s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
293s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
294s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
294s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
294s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
294s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
294s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
295s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
295s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
295s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
295s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
295s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
295s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
295s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
295s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
295s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
295s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
295s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
298s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
303s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
303s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
303s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
304s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
304s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
304s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
304s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
304s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
304s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
304s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
304s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
305s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
305s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
305s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
306s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
306s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
307s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
307s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
307s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
307s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
307s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
307s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
307s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
307s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
308s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
309s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
309s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
309s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
309s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
309s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
309s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
309s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
310s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
310s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
310s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
310s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
310s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
310s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
310s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
311s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
311s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
311s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
339s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
339s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
339s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
339s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
339s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
339s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
339s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
389s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
389s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
389s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
389s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
390s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
390s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
390s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
390s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
393s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
395s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
398s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB]
399s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB]
399s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB]
400s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
402s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
404s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
404s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
404s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
406s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB]
406s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
406s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
406s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
406s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
406s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB]
406s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
407s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB]
408s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
408s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
409s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
409s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
409s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
409s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
409s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
409s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
410s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB]
410s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
410s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
411s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
411s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
426s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
430s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
430s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
445s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB]
445s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
450s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
451s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB]
451s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
451s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
451s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
451s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
451s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB]
451s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
451s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB]
453s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
453s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
453s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
454s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
454s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
454s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
454s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
455s Get:195 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
461s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB]
462s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
462s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
462s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
462s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
463s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
468s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
470s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
470s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
470s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
470s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
473s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
473s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
473s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
474s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
474s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
475s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
475s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
476s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB]
476s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
476s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
479s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
481s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
483s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
483s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
483s Get:221 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
483s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
494s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
522s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
523s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
611s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
611s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
612s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
613s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
618s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
618s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
619s Get:232 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB]
619s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB]
620s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB]
621s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB]
624s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB]
626s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
627s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB]
627s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB]
628s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB]
632s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB]
635s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB]
636s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB]
637s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB]
637s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB]
638s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB]
643s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
644s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-pwalign s390x 1.2.0-2 [750 kB]
645s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hwriter all 1.3.2.1-1 [106 kB]
645s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB]
645s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
645s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-deldir s390x 2.0-4-1build1 [271 kB]
646s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcppeigen s390x 0.3.4.0.2-1 [1429 kB]
647s Get:254 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB]
649s Get:255 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
650s Get:256 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB]
652s Get:257 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-shortread s390x 1.64.0-3 [5288 kB]
658s Get:258 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB]
659s Preconfiguring packages ...
659s Fetched 435 MB in 7min 50s (927 kB/s)
659s Selecting previously unselected package libisl23:s390x.
659s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
659s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
659s Unpacking libisl23:s390x (0.27-1) ...
659s Selecting previously unselected package libmpc3:s390x.
659s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
659s Unpacking libmpc3:s390x (1.3.1-1build2) ...
659s Selecting previously unselected package cpp-14-s390x-linux-gnu.
659s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
659s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
659s Selecting previously unselected package cpp-14.
659s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
659s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
659s Selecting previously unselected package cpp-s390x-linux-gnu.
659s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
659s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
659s Selecting previously unselected package cpp.
659s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
659s Unpacking cpp (4:14.2.0-1ubuntu1) ...
659s Selecting previously unselected package libcc1-0:s390x.
659s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
659s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
659s Selecting previously unselected package libgomp1:s390x.
659s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
659s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
659s Selecting previously unselected package libitm1:s390x.
659s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
659s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
660s Selecting previously unselected package libasan8:s390x.
660s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
660s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
660s Selecting previously unselected package libubsan1:s390x.
660s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
660s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
660s Selecting previously unselected package libgcc-14-dev:s390x.
660s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
660s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
660s Selecting previously unselected package gcc-14-s390x-linux-gnu.
660s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
660s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
660s Selecting previously unselected package gcc-14.
660s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
660s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
660s Selecting previously unselected package gcc-s390x-linux-gnu.
660s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
660s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
660s Selecting previously unselected package gcc.
660s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
660s Unpacking gcc (4:14.2.0-1ubuntu1) ...
660s Selecting previously unselected package libstdc++-14-dev:s390x.
660s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
660s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
660s Selecting previously unselected package g++-14-s390x-linux-gnu.
660s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
660s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
660s Selecting previously unselected package g++-14.
660s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
660s Unpacking g++-14 (14.2.0-17ubuntu3) ...
660s Selecting previously unselected package g++-s390x-linux-gnu.
660s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
660s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
660s Selecting previously unselected package g++.
660s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
660s Unpacking g++ (4:14.2.0-1ubuntu1) ...
660s Selecting previously unselected package build-essential.
660s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
660s Unpacking build-essential (12.10ubuntu1) ...
660s Selecting previously unselected package dctrl-tools.
660s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
660s Unpacking dctrl-tools (2.24-3build3) ...
660s Selecting previously unselected package libfreetype6:s390x.
660s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
660s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
660s Selecting previously unselected package fonts-dejavu-mono.
660s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
660s Unpacking fonts-dejavu-mono (2.37-8) ...
660s Selecting previously unselected package fonts-dejavu-core.
660s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
660s Unpacking fonts-dejavu-core (2.37-8) ...
660s Selecting previously unselected package fontconfig-config.
660s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
660s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
660s Selecting previously unselected package libfontconfig1:s390x.
660s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
660s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
660s Selecting previously unselected package fontconfig.
660s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
660s Unpacking fontconfig (2.15.0-2ubuntu1) ...
660s Selecting previously unselected package fonts-font-awesome.
660s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
660s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
660s Selecting previously unselected package fonts-glyphicons-halflings.
660s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
660s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
660s Selecting previously unselected package fonts-lmodern.
660s Preparing to unpack .../031-fonts-lmodern_2.005-1_all.deb ...
660s Unpacking fonts-lmodern (2.005-1) ...
661s Selecting previously unselected package fonts-mathjax.
661s Preparing to unpack .../032-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
661s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
661s Selecting previously unselected package libgfortran5:s390x.
661s Preparing to unpack .../033-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
661s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
661s Selecting previously unselected package libgfortran-14-dev:s390x.
661s Preparing to unpack .../034-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
661s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
661s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
661s Preparing to unpack .../035-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
661s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
661s Selecting previously unselected package gfortran-14.
661s Preparing to unpack .../036-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
661s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
661s Selecting previously unselected package gfortran-s390x-linux-gnu.
661s Preparing to unpack .../037-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
661s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
661s Selecting previously unselected package gfortran.
661s Preparing to unpack .../038-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
661s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
661s Selecting previously unselected package icu-devtools.
661s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_s390x.deb ...
661s Unpacking icu-devtools (76.1-1ubuntu2) ...
661s Selecting previously unselected package javascript-common.
661s Preparing to unpack .../040-javascript-common_12_all.deb ...
661s Unpacking javascript-common (12) ...
661s Selecting previously unselected package libio-string-perl.
661s Preparing to unpack .../041-libio-string-perl_1.08-4_all.deb ...
661s Unpacking libio-string-perl (1.08-4) ...
661s Selecting previously unselected package liblatex-tounicode-perl.
661s Preparing to unpack .../042-liblatex-tounicode-perl_0.55-1_all.deb ...
661s Unpacking liblatex-tounicode-perl (0.55-1) ...
661s Selecting previously unselected package libbibtex-parser-perl.
661s Preparing to unpack .../043-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
661s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
661s Selecting previously unselected package libblas3:s390x.
661s Preparing to unpack .../044-libblas3_3.12.1-2_s390x.deb ...
661s Unpacking libblas3:s390x (3.12.1-2) ...
661s Selecting previously unselected package libblas-dev:s390x.
661s Preparing to unpack .../045-libblas-dev_3.12.1-2_s390x.deb ...
661s Unpacking libblas-dev:s390x (3.12.1-2) ...
661s Selecting previously unselected package libboost1.83-dev:s390x.
661s Preparing to unpack .../046-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ...
661s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
662s Selecting previously unselected package libboost-dev:s390x.
662s Preparing to unpack .../047-libboost-dev_1.83.0.2ubuntu1_s390x.deb ...
662s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ...
662s Selecting previously unselected package libbz2-dev:s390x.
662s Preparing to unpack .../048-libbz2-dev_1.0.8-6_s390x.deb ...
662s Unpacking libbz2-dev:s390x (1.0.8-6) ...
662s Selecting previously unselected package libpixman-1-0:s390x.
662s Preparing to unpack .../049-libpixman-1-0_0.44.0-3_s390x.deb ...
662s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
662s Selecting previously unselected package libxcb-render0:s390x.
662s Preparing to unpack .../050-libxcb-render0_1.17.0-2_s390x.deb ...
662s Unpacking libxcb-render0:s390x (1.17.0-2) ...
662s Selecting previously unselected package libxcb-shm0:s390x.
662s Preparing to unpack .../051-libxcb-shm0_1.17.0-2_s390x.deb ...
662s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
662s Selecting previously unselected package libxrender1:s390x.
662s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
662s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
662s Selecting previously unselected package libcairo2:s390x.
662s Preparing to unpack .../053-libcairo2_1.18.2-2_s390x.deb ...
662s Unpacking libcairo2:s390x (1.18.2-2) ...
662s Selecting previously unselected package libdatrie1:s390x.
662s Preparing to unpack .../054-libdatrie1_0.2.13-3build1_s390x.deb ...
662s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
662s Selecting previously unselected package libdeflate0:s390x.
662s Preparing to unpack .../055-libdeflate0_1.23-1_s390x.deb ...
662s Unpacking libdeflate0:s390x (1.23-1) ...
662s Selecting previously unselected package libdeflate-dev:s390x.
662s Preparing to unpack .../056-libdeflate-dev_1.23-1_s390x.deb ...
662s Unpacking libdeflate-dev:s390x (1.23-1) ...
662s Selecting previously unselected package libgraphite2-3:s390x.
662s Preparing to unpack .../057-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
662s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
662s Selecting previously unselected package libharfbuzz0b:s390x.
662s Preparing to unpack .../058-libharfbuzz0b_10.2.0-1_s390x.deb ...
662s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
662s Selecting previously unselected package x11-common.
662s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu3_all.deb ...
662s Unpacking x11-common (1:7.7+23ubuntu3) ...
662s Selecting previously unselected package libice6:s390x.
662s Preparing to unpack .../060-libice6_2%3a1.1.1-1_s390x.deb ...
662s Unpacking libice6:s390x (2:1.1.1-1) ...
662s Selecting previously unselected package libicu-dev:s390x.
662s Preparing to unpack .../061-libicu-dev_76.1-1ubuntu2_s390x.deb ...
662s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
663s Selecting previously unselected package libjpeg-turbo8:s390x.
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663s Selecting previously unselected package libjs-jquery-selectize.js.
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663s Selecting previously unselected package libjs-jquery-ui.
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663s Selecting previously unselected package libjs-lunr.
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663s Selecting previously unselected package libkpathsea6:s390x.
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663s Selecting previously unselected package liblapack3:s390x.
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663s Selecting previously unselected package liblua5.4-0:s390x.
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663s Selecting previously unselected package libmpfi0:s390x.
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663s Selecting previously unselected package libncurses-dev:s390x.
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663s Selecting previously unselected package libthai-data.
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663s Selecting previously unselected package libpango-1.0-0:s390x.
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663s Selecting previously unselected package libpangoft2-1.0-0:s390x.
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663s Selecting previously unselected package libpangocairo-1.0-0:s390x.
663s Preparing to unpack .../092-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
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663s Selecting previously unselected package libpaper2:s390x.
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663s Selecting previously unselected package libpcre2-16-0:s390x.
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663s Selecting previously unselected package libpcre2-32-0:s390x.
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663s Selecting previously unselected package libpcre2-posix3:s390x.
663s Preparing to unpack .../097-libpcre2-posix3_10.45-1_s390x.deb ...
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663s Selecting previously unselected package libpcre2-dev:s390x.
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663s Selecting previously unselected package libpkgconf3:s390x.
663s Preparing to unpack .../099-libpkgconf3_1.8.1-4_s390x.deb ...
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663s Selecting previously unselected package zlib1g-dev:s390x.
663s Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
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663s Selecting previously unselected package libpng-dev:s390x.
663s Preparing to unpack .../101-libpng-dev_1.6.47-1_s390x.deb ...
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663s Selecting previously unselected package libpotrace0:s390x.
663s Preparing to unpack .../102-libpotrace0_1.16-2build1_s390x.deb ...
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663s Selecting previously unselected package libptexenc1:s390x.
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663s Selecting previously unselected package libreadline-dev:s390x.
663s Preparing to unpack .../104-libreadline-dev_8.2-6_s390x.deb ...
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663s Selecting previously unselected package libsharpyuv0:s390x.
663s Preparing to unpack .../105-libsharpyuv0_1.5.0-0.1_s390x.deb ...
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663s Selecting previously unselected package libsm6:s390x.
663s Preparing to unpack .../106-libsm6_2%3a1.2.4-1_s390x.deb ...
663s Unpacking libsm6:s390x (2:1.2.4-1) ...
663s Selecting previously unselected package libsynctex2:s390x.
663s Preparing to unpack .../107-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ...
663s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
663s Selecting previously unselected package libtcl8.6:s390x.
663s Preparing to unpack .../108-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
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663s Selecting previously unselected package libteckit0:s390x.
663s Preparing to unpack .../109-libteckit0_2.5.12+ds1-1_s390x.deb ...
663s Unpacking libteckit0:s390x (2.5.12+ds1-1) ...
663s Selecting previously unselected package libtexlua53-5:s390x.
663s Preparing to unpack .../110-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ...
663s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
663s Selecting previously unselected package libjbig0:s390x.
663s Preparing to unpack .../111-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
663s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
664s Selecting previously unselected package libwebp7:s390x.
664s Preparing to unpack .../112-libwebp7_1.5.0-0.1_s390x.deb ...
664s Unpacking libwebp7:s390x (1.5.0-0.1) ...
664s Selecting previously unselected package libtiff6:s390x.
664s Preparing to unpack .../113-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
664s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
664s Selecting previously unselected package libxft2:s390x.
664s Preparing to unpack .../114-libxft2_2.3.6-1build1_s390x.deb ...
664s Unpacking libxft2:s390x (2.3.6-1build1) ...
664s Selecting previously unselected package libxss1:s390x.
664s Preparing to unpack .../115-libxss1_1%3a1.2.3-1build3_s390x.deb ...
664s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
664s Selecting previously unselected package libtk8.6:s390x.
664s Preparing to unpack .../116-libtk8.6_8.6.16-1_s390x.deb ...
664s Unpacking libtk8.6:s390x (8.6.16-1) ...
664s Selecting previously unselected package libxt6t64:s390x.
664s Preparing to unpack .../117-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
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664s Selecting previously unselected package libxmu6:s390x.
664s Preparing to unpack .../118-libxmu6_2%3a1.1.3-3build2_s390x.deb ...
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664s Selecting previously unselected package libxpm4:s390x.
664s Preparing to unpack .../119-libxpm4_1%3a3.5.17-1build2_s390x.deb ...
664s Unpacking libxpm4:s390x (1:3.5.17-1build2) ...
664s Selecting previously unselected package libxaw7:s390x.
664s Preparing to unpack .../120-libxaw7_2%3a1.0.16-1_s390x.deb ...
664s Unpacking libxaw7:s390x (2:1.0.16-1) ...
664s Selecting previously unselected package libxi6:s390x.
664s Preparing to unpack .../121-libxi6_2%3a1.8.2-1_s390x.deb ...
664s Unpacking libxi6:s390x (2:1.8.2-1) ...
664s Selecting previously unselected package libzzip-0-13t64:s390x.
664s Preparing to unpack .../122-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ...
664s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
664s Selecting previously unselected package zip.
664s Preparing to unpack .../123-zip_3.0-14ubuntu2_s390x.deb ...
664s Unpacking zip (3.0-14ubuntu2) ...
664s Selecting previously unselected package unzip.
664s Preparing to unpack .../124-unzip_6.0-28ubuntu6_s390x.deb ...
664s Unpacking unzip (6.0-28ubuntu6) ...
664s Selecting previously unselected package xdg-utils.
664s Preparing to unpack .../125-xdg-utils_1.2.1-2ubuntu1_all.deb ...
664s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
664s Selecting previously unselected package r-base-core.
664s Preparing to unpack .../126-r-base-core_4.4.3-1_s390x.deb ...
664s Unpacking r-base-core (4.4.3-1) ...
664s Selecting previously unselected package r-cran-littler.
664s Preparing to unpack .../127-r-cran-littler_0.3.20-2_s390x.deb ...
664s Unpacking r-cran-littler (0.3.20-2) ...
664s Selecting previously unselected package littler.
664s Preparing to unpack .../128-littler_0.3.20-2_all.deb ...
664s Unpacking littler (0.3.20-2) ...
664s Selecting previously unselected package node-bootstrap-sass.
664s Preparing to unpack .../129-node-bootstrap-sass_3.4.3-2_all.deb ...
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664s Selecting previously unselected package node-html5shiv.
664s Preparing to unpack .../130-node-html5shiv_3.7.3+dfsg-5_all.deb ...
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664s Selecting previously unselected package node-normalize.css.
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664s Selecting previously unselected package pandoc-data.
664s Preparing to unpack .../132-pandoc-data_3.1.11.1-3build1_all.deb ...
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664s Selecting previously unselected package pandoc.
664s Preparing to unpack .../133-pandoc_3.1.11.1+ds-2_s390x.deb ...
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665s Selecting previously unselected package liblzma-dev:s390x.
665s Preparing to unpack .../134-liblzma-dev_5.6.4-1_s390x.deb ...
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665s Selecting previously unselected package pkgconf-bin.
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665s Selecting previously unselected package pkgconf:s390x.
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665s Selecting previously unselected package libtirpc-dev:s390x.
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665s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
665s Selecting previously unselected package r-base-dev.
665s Preparing to unpack .../138-r-base-dev_4.4.3-1_all.deb ...
665s Unpacking r-base-dev (4.4.3-1) ...
665s Selecting previously unselected package pkg-r-autopkgtest.
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665s Selecting previously unselected package r-bioc-biocgenerics.
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665s Selecting previously unselected package r-bioc-biobase.
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665s Selecting previously unselected package r-bioc-s4vectors.
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665s Selecting previously unselected package r-bioc-iranges.
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665s Selecting previously unselected package r-cran-dbi.
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665s Selecting previously unselected package r-cran-bit.
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665s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
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666s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ...
666s Selecting previously unselected package r-cran-rlang.
666s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_s390x.deb ...
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666s Selecting previously unselected package r-cran-cli.
666s Preparing to unpack .../148-r-cran-cli_3.6.4-1_s390x.deb ...
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666s Selecting previously unselected package r-cran-glue.
666s Preparing to unpack .../149-r-cran-glue_1.8.0-1_s390x.deb ...
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666s Selecting previously unselected package r-cran-lifecycle.
666s Preparing to unpack .../150-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
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666s Selecting previously unselected package r-cran-vctrs.
666s Preparing to unpack .../151-r-cran-vctrs_0.6.5-1_s390x.deb ...
666s Unpacking r-cran-vctrs (0.6.5-1) ...
666s Selecting previously unselected package r-cran-blob.
666s Preparing to unpack .../152-r-cran-blob_1.2.4-1_all.deb ...
666s Unpacking r-cran-blob (1.2.4-1) ...
666s Selecting previously unselected package r-cran-fastmap.
666s Preparing to unpack .../153-r-cran-fastmap_1.2.0-1_s390x.deb ...
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666s Selecting previously unselected package r-cran-cachem.
666s Preparing to unpack .../154-r-cran-cachem_1.1.0-1_s390x.deb ...
666s Unpacking r-cran-cachem (1.1.0-1) ...
666s Selecting previously unselected package r-cran-memoise.
666s Preparing to unpack .../155-r-cran-memoise_2.0.1-1_all.deb ...
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666s Selecting previously unselected package r-cran-pkgconfig.
666s Preparing to unpack .../156-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
666s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
666s Selecting previously unselected package r-cran-plogr.
666s Preparing to unpack .../157-r-cran-plogr_0.2.0-3build1_all.deb ...
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666s Selecting previously unselected package r-cran-cpp11.
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666s Selecting previously unselected package r-cran-rsqlite.
666s Preparing to unpack .../159-r-cran-rsqlite_2.3.9-1_s390x.deb ...
666s Unpacking r-cran-rsqlite (2.3.9-1) ...
666s Selecting previously unselected package r-cran-curl.
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666s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
666s Selecting previously unselected package r-cran-jsonlite.
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666s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
666s Selecting previously unselected package r-cran-mime.
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666s Unpacking r-cran-mime (0.12-2) ...
666s Selecting previously unselected package r-cran-sys.
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666s Selecting previously unselected package r-cran-askpass.
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666s Selecting previously unselected package r-cran-r6.
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666s Selecting previously unselected package r-bioc-zlibbioc.
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666s Selecting previously unselected package r-bioc-xvector.
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666s Selecting previously unselected package r-bioc-ucsc.utils.
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666s Selecting previously unselected package r-bioc-genomeinfodbdata.
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666s Selecting previously unselected package r-bioc-genomeinfodb.
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666s Selecting previously unselected package r-cran-crayon.
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666s Selecting previously unselected package r-bioc-biostrings.
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666s Selecting previously unselected package r-bioc-keggrest.
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666s Selecting previously unselected package r-bioc-annotationdbi.
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666s Selecting previously unselected package r-bioc-biocio.
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666s Selecting previously unselected package r-cran-formatr.
666s Preparing to unpack .../179-r-cran-formatr_1.14-2_all.deb ...
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666s Selecting previously unselected package r-cran-lambda.r.
666s Preparing to unpack .../180-r-cran-lambda.r_1.2.4-2build1_all.deb ...
666s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
666s Selecting previously unselected package r-cran-futile.options.
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666s Unpacking r-cran-futile.options (1.0.1-3build1) ...
666s Selecting previously unselected package r-cran-futile.logger.
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666s Selecting previously unselected package r-cran-snow.
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666s Unpacking r-cran-snow (1:0.4.4-2) ...
666s Selecting previously unselected package r-cran-codetools.
666s Preparing to unpack .../184-r-cran-codetools_0.2-20-1_all.deb ...
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666s Selecting previously unselected package r-cran-bh.
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666s Selecting previously unselected package r-bioc-biocparallel.
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666s Selecting previously unselected package r-cran-base64enc.
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666s Selecting previously unselected package r-cran-digest.
666s Preparing to unpack .../188-r-cran-digest_0.6.37-1_s390x.deb ...
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666s Selecting previously unselected package r-cran-htmltools.
666s Preparing to unpack .../189-r-cran-htmltools_0.5.8.1-1_s390x.deb ...
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666s Selecting previously unselected package r-cran-evaluate.
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666s Selecting previously unselected package r-cran-xfun.
666s Preparing to unpack .../191-r-cran-xfun_0.51+dfsg-1_s390x.deb ...
666s Unpacking r-cran-xfun (0.51+dfsg-1) ...
666s Selecting previously unselected package r-cran-highr.
666s Preparing to unpack .../192-r-cran-highr_0.11+dfsg-1_all.deb ...
666s Unpacking r-cran-highr (0.11+dfsg-1) ...
666s Selecting previously unselected package r-cran-yaml.
666s Preparing to unpack .../193-r-cran-yaml_2.3.10-1_s390x.deb ...
666s Unpacking r-cran-yaml (2.3.10-1) ...
666s Selecting previously unselected package libjs-mathjax.
666s Preparing to unpack .../194-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
666s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
667s Selecting previously unselected package r-cran-knitr.
667s Preparing to unpack .../195-r-cran-knitr_1.49+dfsg-1_all.deb ...
667s Unpacking r-cran-knitr (1.49+dfsg-1) ...
667s Selecting previously unselected package r-cran-jquerylib.
667s Preparing to unpack .../196-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
667s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
667s Selecting previously unselected package r-cran-fs.
667s Preparing to unpack .../197-r-cran-fs_1.6.5+dfsg-1_s390x.deb ...
667s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
667s Selecting previously unselected package r-cran-rappdirs.
667s Preparing to unpack .../198-r-cran-rappdirs_0.3.3-1_s390x.deb ...
667s Unpacking r-cran-rappdirs (0.3.3-1) ...
667s Selecting previously unselected package r-cran-sass.
667s Preparing to unpack .../199-r-cran-sass_0.4.9+dfsg-1_s390x.deb ...
667s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
667s Selecting previously unselected package r-cran-bslib.
667s Preparing to unpack .../200-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
667s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
667s Selecting previously unselected package r-cran-fontawesome.
667s Preparing to unpack .../201-r-cran-fontawesome_0.5.3-1_all.deb ...
667s Unpacking r-cran-fontawesome (0.5.3-1) ...
667s Selecting previously unselected package r-cran-tinytex.
667s Preparing to unpack .../202-r-cran-tinytex_0.56-1_all.deb ...
667s Unpacking r-cran-tinytex (0.56-1) ...
667s Selecting previously unselected package libjs-modernizr.
667s Preparing to unpack .../203-libjs-modernizr_3.13.0-0.1_all.deb ...
667s Unpacking libjs-modernizr (3.13.0-0.1) ...
667s Selecting previously unselected package r-cran-pkgkitten.
667s Preparing to unpack .../204-r-cran-pkgkitten_0.2.4-1_all.deb ...
667s Unpacking r-cran-pkgkitten (0.2.4-1) ...
667s Selecting previously unselected package r-cran-rcpp.
667s Preparing to unpack .../205-r-cran-rcpp_1.0.14-1_s390x.deb ...
667s Unpacking r-cran-rcpp (1.0.14-1) ...
667s Selecting previously unselected package r-cran-later.
667s Preparing to unpack .../206-r-cran-later_1.4.1+dfsg-1_s390x.deb ...
667s Unpacking r-cran-later (1.4.1+dfsg-1) ...
667s Selecting previously unselected package r-cran-magrittr.
667s Preparing to unpack .../207-r-cran-magrittr_2.0.3-1_s390x.deb ...
667s Unpacking r-cran-magrittr (2.0.3-1) ...
667s Selecting previously unselected package r-cran-promises.
667s Preparing to unpack .../208-r-cran-promises_1.3.2+dfsg-1_s390x.deb ...
667s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
667s Selecting previously unselected package r-cran-httpuv.
667s Preparing to unpack .../209-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ...
667s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
667s Selecting previously unselected package r-cran-xtable.
667s Preparing to unpack .../210-r-cran-xtable_1%3a1.8-4-2_all.deb ...
667s Unpacking r-cran-xtable (1:1.8-4-2) ...
667s Selecting previously unselected package r-cran-sourcetools.
667s Preparing to unpack .../211-r-cran-sourcetools_0.1.7-1-1_s390x.deb ...
667s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
667s Selecting previously unselected package r-cran-withr.
667s Preparing to unpack .../212-r-cran-withr_3.0.2+dfsg-1_all.deb ...
667s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
667s Selecting previously unselected package r-cran-commonmark.
667s Preparing to unpack .../213-r-cran-commonmark_1.9.2-2_s390x.deb ...
667s Unpacking r-cran-commonmark (1.9.2-2) ...
667s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
667s Preparing to unpack .../214-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
667s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
667s Selecting previously unselected package r-cran-shiny.
667s Preparing to unpack .../215-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
667s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
667s Selecting previously unselected package r-cran-rmarkdown.
667s Preparing to unpack .../216-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
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667s Selecting previously unselected package r-cran-bookdown.
667s Preparing to unpack .../217-r-cran-bookdown_0.42+dfsg-1_all.deb ...
667s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
667s Selecting previously unselected package r-cran-biocmanager.
667s Preparing to unpack .../218-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
667s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
667s Selecting previously unselected package tex-common.
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667s Selecting previously unselected package t1utils.
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668s Preparing to unpack .../221-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ...
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668s Selecting previously unselected package texlive-base.
668s Preparing to unpack .../222-texlive-base_2024.20250114-1_all.deb ...
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669s Selecting previously unselected package texlive-latex-base.
669s Preparing to unpack .../223-texlive-latex-base_2024.20250114-1_all.deb ...
669s Unpacking texlive-latex-base (2024.20250114-1) ...
669s Selecting previously unselected package texlive-bibtex-extra.
669s Preparing to unpack .../224-texlive-bibtex-extra_2024.20250114-1_all.deb ...
669s Unpacking texlive-bibtex-extra (2024.20250114-1) ...
672s Selecting previously unselected package r-bioc-biocversion.
672s Preparing to unpack .../225-r-bioc-biocversion_3.20.0-2_all.deb ...
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672s Selecting previously unselected package r-bioc-biocstyle.
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672s Selecting previously unselected package r-cran-lattice.
672s Preparing to unpack .../227-r-cran-lattice_0.22-6-1_s390x.deb ...
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672s Selecting previously unselected package r-cran-matrix.
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672s Selecting previously unselected package r-cran-matrixstats.
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672s Selecting previously unselected package r-bioc-matrixgenerics.
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672s Selecting previously unselected package r-cran-abind.
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672s Selecting previously unselected package r-bioc-s4arrays.
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672s Selecting previously unselected package r-bioc-sparsearray.
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672s Selecting previously unselected package r-bioc-delayedarray.
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672s Selecting previously unselected package r-bioc-genomicranges.
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673s Setting up libjs-json (0~20221030+~1.0.8-1) ...
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673s Setting up libdeflate0:s390x (1.23-1) ...
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673s Setting up libxcb-shm0:s390x (1.17.0-2) ...
673s Setting up libreadline-dev:s390x (8.2-6) ...
673s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
673s Setting up libjs-modernizr (3.13.0-0.1) ...
673s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
673s Setting up libpcre2-16-0:s390x (10.45-1) ...
673s Setting up libjs-es5-shim (4.6.7-2) ...
673s Setting up tex-common (6.19) ...
673s update-language: texlive-base not installed and configured, doing nothing!
673s Setting up libio-string-perl (1.08-4) ...
673s Setting up zip (3.0-14ubuntu2) ...
673s Setting up libpcre2-32-0:s390x (10.45-1) ...
673s Setting up libblas3:s390x (3.12.1-2) ...
673s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
673s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
673s Setting up libpkgconf3:s390x (1.8.1-4) ...
673s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
673s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
673s Setting up libteckit0:s390x (2.5.12+ds1-1) ...
673s Setting up t1utils (1.41-4build3) ...
673s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
673s Setting up libjs-d3 (3.5.17-4) ...
673s Setting up fonts-dejavu-mono (2.37-8) ...
673s Setting up libmpc3:s390x (1.3.1-1build2) ...
673s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
673s Setting up libmpfi0:s390x (1.5.4+ds-4) ...
673s Setting up icu-devtools (76.1-1ubuntu2) ...
673s Setting up fonts-dejavu-core (2.37-8) ...
673s Setting up pkgconf-bin (1.8.1-4) ...
673s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
673s Setting up libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
673s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
673s Setting up libwebp7:s390x (1.5.0-0.1) ...
673s Setting up liblzma-dev:s390x (5.6.4-1) ...
673s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
673s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
673s Setting up libpcre2-posix3:s390x (10.45-1) ...
673s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
673s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
673s Setting up fonts-lmodern (2.005-1) ...
673s Setting up liblua5.4-0:s390x (5.4.7-1) ...
673s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
673s Setting up libthai-data (0.1.29-2build1) ...
673s Setting up node-bootstrap-sass (3.4.3-2) ...
673s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
673s Setting up libxss1:s390x (1:1.2.3-1build3) ...
673s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
673s Setting up libpaper2:s390x (2.2.5-0.3) ...
673s Setting up pandoc-data (3.1.11.1-3build1) ...
673s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
673s Setting up libisl23:s390x (0.27-1) ...
673s Setting up libdeflate-dev:s390x (1.23-1) ...
673s Setting up node-normalize.css (8.0.1-5) ...
673s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
673s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
673s Setting up xdg-utils (1.2.1-2ubuntu1) ...
673s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
673s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
673s Setting up libblas-dev:s390x (3.12.1-2) ...
673s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
673s Setting up dctrl-tools (2.24-3build3) ...
673s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
673s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
673s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
673s Setting up libbz2-dev:s390x (1.0.8-6) ...
673s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
673s Setting up libpotrace0:s390x (1.16-2build1) ...
673s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
673s Setting up libice6:s390x (2:1.1.1-1) ...
673s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
673s Setting up liblapack3:s390x (3.12.1-2) ...
673s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
673s Setting up libpcre2-dev:s390x (10.45-1) ...
673s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
674s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
674s Setting up libpng-dev:s390x (1.6.47-1) ...
674s Setting up libpaper-utils (2.2.5-0.3) ...
674s Setting up libbibtex-parser-perl (1.05+dfsg-1) ...
674s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
674s Setting up pkgconf:s390x (1.8.1-4) ...
674s Setting up libthai0:s390x (0.1.29-2build1) ...
674s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
674s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
674s Setting up pandoc (3.1.11.1+ds-2) ...
674s Setting up liblapack-dev:s390x (3.12.1-2) ...
674s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
674s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
674s Setting up cpp-14 (14.2.0-17ubuntu3) ...
674s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
674s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
674s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
674s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
674s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
674s Setting up libsm6:s390x (2:1.2.4-1) ...
674s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
674s Setting up fontconfig (2.15.0-2ubuntu1) ...
676s Regenerating fonts cache... done.
676s Setting up libxft2:s390x (2.3.6-1build1) ...
676s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
676s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
676s Setting up libtk8.6:s390x (8.6.16-1) ...
676s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
676s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
676s Setting up libcairo2:s390x (1.18.2-2) ...
676s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
676s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
676s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
676s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
676s Setting up cpp (4:14.2.0-1ubuntu1) ...
676s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
676s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
676s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
676s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
676s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
676s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
676s Setting up libxaw7:s390x (2:1.0.16-1) ...
676s Setting up gcc-14 (14.2.0-17ubuntu3) ...
676s Setting up r-base-core (4.4.3-1) ...
676s Creating config file /etc/R/Renviron with new version
676s Setting up r-cran-crayon (1.5.3-1) ...
676s Setting up r-cran-sourcetools (0.1.7-1-1) ...
676s Setting up r-cran-futile.options (1.0.1-3build1) ...
676s Setting up r-cran-lattice (0.22-6-1) ...
676s Setting up r-cran-formatr (1.14-2) ...
676s Setting up r-cran-xml (3.99-0.18-1) ...
676s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
676s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
676s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
676s Setting up r-cran-commonmark (1.9.2-2) ...
676s Setting up g++-14 (14.2.0-17ubuntu3) ...
676s Setting up r-cran-rjson (0.2.23-1) ...
676s Setting up r-cran-r6 (2.6.1-1) ...
676s Setting up r-cran-pkgkitten (0.2.4-1) ...
676s Setting up r-cran-jpeg (0.1-10-1) ...
676s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
676s Setting up texlive-base (2024.20250114-1) ...
676s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
676s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
676s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
677s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
677s Setting up r-cran-magrittr (2.0.3-1) ...
677s Setting up r-cran-rappdirs (0.3.3-1) ...
677s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
677s Setting up r-cran-littler (0.3.20-2) ...
677s Setting up r-cran-bh (1.84.0-1) ...
677s Setting up r-cran-fs (1.6.5+dfsg-1) ...
677s Setting up r-cran-rcpp (1.0.14-1) ...
677s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
677s Setting up r-cran-codetools (0.2-20-1) ...
677s Setting up r-bioc-biocgenerics (0.52.0-2) ...
677s Setting up r-cran-rlang (1.1.5-1) ...
677s Setting up r-cran-matrixstats (1.5.0-1) ...
677s Setting up littler (0.3.20-2) ...
677s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
677s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
677s Setting up r-cran-xfun (0.51+dfsg-1) ...
677s Setting up r-cran-sys (3.4.3-1) ...
677s Setting up r-cran-plogr (0.2.0-3build1) ...
677s Setting up r-cran-withr (3.0.2+dfsg-1) ...
677s Setting up r-cran-mime (0.12-2) ...
677s Setting up r-cran-base64enc (0.1-3-3) ...
677s Setting up r-cran-abind (1.4-8-1) ...
677s Setting up r-cran-digest (0.6.37-1) ...
677s Setting up r-cran-yaml (2.3.10-1) ...
677s Setting up r-cran-lambda.r (1.2.4-2build1) ...
677s Setting up r-cran-evaluate (1.0.3-1) ...
677s Setting up r-cran-dbi (1.2.3-1) ...
677s Setting up r-cran-highr (0.11+dfsg-1) ...
677s Setting up r-cran-mass (7.3-64-1) ...
677s Setting up r-cran-snow (1:0.4.4-2) ...
677s Setting up r-cran-glue (1.8.0-1) ...
677s Setting up r-cran-bit (4.6.0+dfsg-1) ...
677s Setting up r-cran-xtable (1:1.8-4-2) ...
677s Setting up r-cran-cli (3.6.4-1) ...
677s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
677s Setting up r-cran-bitops (1.0-9-1) ...
677s Setting up r-bioc-biocversion (3.20.0-2) ...
677s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
677s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
677s Setting up gcc (4:14.2.0-1ubuntu1) ...
677s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
677s Setting up r-cran-deldir (2.0-4-1build1) ...
677s Setting up r-cran-askpass (1.2.1-1) ...
677s Setting up r-cran-fastmap (1.2.0-1) ...
677s Setting up r-cran-png (0.1-8-1build2) ...
677s Setting up r-bioc-biobase (2.66.0-2) ...
677s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
677s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
677s Setting up texlive-latex-base (2024.20250114-1) ...
677s Setting up r-cran-hwriter (1.3.2.1-1) ...
677s Setting up r-cran-cpp11 (0.5.2-1) ...
677s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
677s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
677s Setting up r-cran-runit (0.4.33-1) ...
677s Setting up r-cran-futile.logger (1.4.3-4build1) ...
677s Setting up r-cran-later (1.4.1+dfsg-1) ...
677s Setting up r-cran-matrix (1.7-3-1) ...
677s Setting up r-cran-htmltools (0.5.8.1-1) ...
677s Setting up r-cran-tinytex (0.56-1) ...
677s Setting up r-cran-knitr (1.49+dfsg-1) ...
677s Setting up g++ (4:14.2.0-1ubuntu1) ...
677s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
677s Setting up r-cran-cachem (1.1.0-1) ...
677s Setting up r-cran-sass (0.4.9+dfsg-1) ...
677s Setting up build-essential (12.10ubuntu1) ...
677s Setting up r-bioc-iranges (2.40.1-2) ...
677s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
677s Setting up r-cran-restfulr (0.0.15-1) ...
677s Setting up r-cran-vctrs (0.6.5-1) ...
677s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
677s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
677s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
677s Setting up r-bioc-biocparallel (1.40.0-2) ...
677s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
677s Setting up r-cran-fontawesome (0.5.3-1) ...
677s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
677s Setting up gfortran (4:14.2.0-1ubuntu1) ...
677s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
677s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
677s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
677s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
677s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
677s Setting up texlive-bibtex-extra (2024.20250114-1) ...
677s Setting up r-cran-interp (1.1-6-1) ...
677s Setting up r-cran-httr (1.4.7+dfsg-1) ...
677s Setting up r-cran-memoise (2.0.1-1) ...
677s Setting up r-cran-promises (1.3.2+dfsg-1) ...
677s Setting up r-cran-blob (1.2.4-1) ...
677s Setting up r-bioc-xvector (0.46.0-2) ...
677s Setting up r-cran-rsqlite (2.3.9-1) ...
677s Setting up r-base-dev (4.4.3-1) ...
677s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
677s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
677s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
677s Setting up r-cran-latticeextra (0.6-30-1) ...
677s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
677s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
677s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
677s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
677s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
677s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
677s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
677s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
677s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
677s Setting up r-cran-bookdown (0.42+dfsg-1) ...
677s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
677s Setting up r-bioc-pwalign (1.2.0-2) ...
677s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
677s Setting up r-bioc-annotationdbi (1.68.0-2) ...
677s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
677s Setting up r-bioc-genomicalignments (1.42.0-2) ...
677s Setting up r-bioc-rtracklayer (1.66.0-2) ...
677s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
677s Setting up r-bioc-shortread (1.64.0-3) ...
677s Processing triggers for libc-bin (2.41-1ubuntu2) ...
677s Processing triggers for man-db (2.13.0-1) ...
678s Processing triggers for install-info (7.1.1-1) ...
678s Processing triggers for tex-common (6.19) ...
679s Running updmap-sys. This may take some time... done.
679s Running mktexlsr /var/lib/texmf ... done.
679s Building format(s) --all.
719s 	This may take some time... done.
719s autopkgtest [17:15:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
719s autopkgtest [17:15:19]: test pkg-r-autopkgtest: [-----------------------
720s Test: Try to load the R library Rsamtools
720s 
720s R version 4.4.3 (2025-02-28) -- "Trophy Case"
720s Copyright (C) 2025 The R Foundation for Statistical Computing
720s Platform: s390x-ibm-linux-gnu
720s 
720s R is free software and comes with ABSOLUTELY NO WARRANTY.
720s You are welcome to redistribute it under certain conditions.
720s Type 'license()' or 'licence()' for distribution details.
720s 
720s R is a collaborative project with many contributors.
720s Type 'contributors()' for more information and
720s 'citation()' on how to cite R or R packages in publications.
720s 
720s Type 'demo()' for some demos, 'help()' for on-line help, or
720s 'help.start()' for an HTML browser interface to help.
720s Type 'q()' to quit R.
720s 
720s > library('Rsamtools')
720s Loading required package: GenomeInfoDb
720s Loading required package: BiocGenerics
720s 
720s Attaching package: ‘BiocGenerics’
720s 
720s The following objects are masked from ‘package:stats’:
720s 
720s     IQR, mad, sd, var, xtabs
720s 
720s The following objects are masked from ‘package:base’:
720s 
720s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
720s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
720s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
720s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
720s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
720s     table, tapply, union, unique, unsplit, which.max, which.min
720s 
720s Loading required package: S4Vectors
720s Loading required package: stats4
720s 
720s Attaching package: ‘S4Vectors’
720s 
720s The following object is masked from ‘package:utils’:
720s 
720s     findMatches
720s 
720s The following objects are masked from ‘package:base’:
720s 
720s     expand.grid, I, unname
720s 
720s Loading required package: IRanges
721s Loading required package: GenomicRanges
722s Loading required package: Biostrings
722s Loading required package: XVector
722s 
722s Attaching package: ‘Biostrings’
722s 
722s The following object is masked from ‘package:base’:
722s 
722s     strsplit
722s 
722s > 
722s > 
722s Other tests are currently unsupported!
722s They will be progressively added.
723s autopkgtest [17:15:23]: test pkg-r-autopkgtest: -----------------------]
723s autopkgtest [17:15:23]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
723s pkg-r-autopkgtest    PASS
724s autopkgtest [17:15:24]: @@@@@@@@@@@@@@@@@@@@ summary
724s pkg-r-autopkgtest    PASS
741s nova [W] Using flock in prodstack6-s390x
741s Creating nova instance adt-plucky-s390x-r-bioc-rsamtools-20250315-170320-juju-7f2275-prod-proposed-migration-environment-2-36ef9fd7-65d7-4fb8-bd8b-997682706248 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
741s nova [W] Timed out waiting for cb23eab0-4b6d-4971-8a6b-856ed3e7127b to get deleted.