0s autopkgtest [17:46:19]: starting date and time: 2025-03-15 17:46:19+0000
  0s autopkgtest [17:46:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:46:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lq_uiozh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rots --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-5.secgroup --name adt-plucky-s390x-r-bioc-rots-20250315-174619-juju-7f2275-prod-proposed-migration-environment-2-f134c851-73d6-4e65-b743-1668816b1d76 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
135s autopkgtest [17:48:34]: testbed dpkg architecture: s390x
136s autopkgtest [17:48:35]: testbed apt version: 2.9.33
136s autopkgtest [17:48:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup
136s autopkgtest [17:48:35]: testbed release detected to be: None
137s autopkgtest [17:48:36]: updating testbed package index (apt update)
137s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
137s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
138s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
138s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
138s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
138s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
138s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
138s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
138s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
138s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
138s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
138s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
138s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
139s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
139s Fetched 1073 kB in 2s (686 kB/s)
139s Reading package lists...
140s Reading package lists...
140s Building dependency tree...
140s Reading state information...
140s Calculating upgrade...
140s Calculating upgrade...
140s The following packages were automatically installed and are no longer required:
140s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
140s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
140s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
140s   linux-tools-6.11.0-8-generic
140s Use 'sudo apt autoremove' to remove them.
140s The following packages will be upgraded:
140s   pinentry-curses python3-jinja2 strace
140s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
140s Need to get 652 kB of archives.
140s After this operation, 27.6 kB of additional disk space will be used.
140s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
141s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
141s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
142s Fetched 652 kB in 1s (649 kB/s)
142s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
142s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
142s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
142s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
142s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
142s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
142s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
142s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
142s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
142s Setting up strace (6.13+ds-1ubuntu1) ...
142s Processing triggers for man-db (2.13.0-1) ...
143s Reading package lists...
143s Building dependency tree...
143s Reading state information...
143s Solving dependencies...
143s The following packages will be REMOVED:
143s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
143s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
143s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
143s   linux-tools-6.11.0-8-generic*
143s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
143s After this operation, 167 MB disk space will be freed.
143s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
143s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
143s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
143s Removing libpython3.12t64:s390x (3.12.9-1) ...
143s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
143s Removing libnsl2:s390x (1.3.0-3build3) ...
143s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
143s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
143s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
144s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
144s Processing triggers for libc-bin (2.41-1ubuntu1) ...
144s (Reading database ... 
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(Reading database ... 85%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
144s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
144s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
145s autopkgtest [17:48:44]: upgrading testbed (apt dist-upgrade and autopurge)
145s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
145s Starting 2 pkgProblemResolver with broken count: 0
145s Done
145s Entering ResolveByKeep
145s 
146s Calculating upgrade...
146s The following packages will be upgraded:
146s   libc-bin libc-dev-bin libc6 libc6-dev locales
146s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
146s Need to get 9512 kB of archives.
146s After this operation, 8192 B of additional disk space will be used.
146s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
147s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
147s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
150s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
150s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
154s Preconfiguring packages ...
154s Fetched 9512 kB in 8s (1168 kB/s)
154s (Reading database ... 
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(Reading database ... 55%
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
154s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
154s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
154s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
154s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
154s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
154s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
154s Setting up libc6:s390x (2.41-1ubuntu2) ...
154s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
154s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
154s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
155s Setting up libc-bin (2.41-1ubuntu2) ...
155s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
155s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
155s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
155s Setting up locales (2.41-1ubuntu2) ...
155s Generating locales (this might take a while)...
156s   en_US.UTF-8... done
156s Generation complete.
156s Setting up libc-dev-bin (2.41-1ubuntu2) ...
156s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
156s Processing triggers for man-db (2.13.0-1) ...
157s Processing triggers for systemd (257.3-1ubuntu3) ...
158s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s Starting pkgProblemResolver with broken count: 0
158s Starting 2 pkgProblemResolver with broken count: 0
158s Done
158s Solving dependencies...
158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
158s autopkgtest [17:48:57]: rebooting testbed after setup commands that affected boot
177s autopkgtest [17:49:16]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
179s autopkgtest [17:49:18]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rots
181s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rots 1.34.0-2 (dsc) [2076 B]
181s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rots 1.34.0-2 (tar) [467 kB]
181s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rots 1.34.0-2 (diff) [2692 B]
181s gpgv: Signature made Sun Jan 12 03:00:50 2025 UTC
181s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
181s gpgv:                issuer "crusoe@debian.org"
181s gpgv: Can't check signature: No public key
181s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rots_1.34.0-2.dsc: no acceptable signature found
181s autopkgtest [17:49:20]: testing package r-bioc-rots version 1.34.0-2
182s autopkgtest [17:49:21]: build not needed
184s autopkgtest [17:49:23]: test pkg-r-autopkgtest: preparing testbed
184s Reading package lists...
184s Building dependency tree...
184s Reading state information...
184s Starting pkgProblemResolver with broken count: 0
184s Starting 2 pkgProblemResolver with broken count: 0
184s Done
184s The following NEW packages will be installed:
184s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
184s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
184s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
184s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
184s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
184s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
184s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
184s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
184s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
184s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
184s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
184s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
184s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
184s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
184s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
184s   libxft2 libxrender1 libxss1 libxt6t64 littler pkg-r-autopkgtest pkgconf
184s   pkgconf-bin r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
184s   r-bioc-rots r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc
184s   r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fs r-cran-glue
184s   r-cran-jsonlite r-cran-lifecycle r-cran-littler r-cran-magrittr
184s   r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise
184s   r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rlang
184s   r-cran-rprojroot r-cran-testthat r-cran-waldo r-cran-withr unzip x11-common
184s   xdg-utils zip zlib1g-dev
185s 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded.
185s Need to get 138 MB of archives.
185s After this operation, 392 MB of additional disk space will be used.
185s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
185s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
186s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
195s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
195s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
195s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
195s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
195s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
195s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
195s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
198s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
198s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
199s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
215s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
215s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
215s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
215s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
217s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
227s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
227s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
227s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
227s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
227s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
227s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
228s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
228s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
229s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
229s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
229s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
229s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
230s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
230s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
240s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
240s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
240s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
240s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
240s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
240s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
240s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
240s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
240s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
240s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
240s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
240s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
241s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
241s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
241s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
241s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
241s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
242s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
242s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
242s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
252s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
252s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
253s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
253s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
253s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
253s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
256s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
262s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
262s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
262s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
262s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
263s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
263s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
263s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
263s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
263s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
263s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
263s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
263s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
264s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
264s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
265s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
265s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
266s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
266s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
266s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
267s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
267s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
267s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
267s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
267s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
267s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
268s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
268s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
268s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
269s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
269s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
298s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
298s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
298s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
298s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
298s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
298s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
298s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
298s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
298s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
299s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
301s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
301s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
303s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rots s390x 1.34.0-2 [537 kB]
304s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB]
304s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB]
305s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
305s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB]
305s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB]
306s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
307s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
307s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB]
308s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB]
309s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
309s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
309s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
309s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
309s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
310s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
311s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
311s Get:119 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
312s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB]
312s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB]
312s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
312s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB]
312s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB]
312s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB]
313s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB]
315s Preconfiguring packages ...
315s Fetched 138 MB in 2min 10s (1063 kB/s)
315s Selecting previously unselected package libisl23:s390x.
315s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
315s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
315s Unpacking libisl23:s390x (0.27-1) ...
315s Selecting previously unselected package libmpc3:s390x.
315s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
315s Unpacking libmpc3:s390x (1.3.1-1build2) ...
315s Selecting previously unselected package cpp-14-s390x-linux-gnu.
315s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
315s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
315s Selecting previously unselected package cpp-14.
315s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
315s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
315s Selecting previously unselected package cpp-s390x-linux-gnu.
315s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
315s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
315s Selecting previously unselected package cpp.
315s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
315s Unpacking cpp (4:14.2.0-1ubuntu1) ...
315s Selecting previously unselected package libcc1-0:s390x.
315s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
315s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
315s Selecting previously unselected package libgomp1:s390x.
315s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
315s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
315s Selecting previously unselected package libitm1:s390x.
315s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
315s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
315s Selecting previously unselected package libasan8:s390x.
315s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
315s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
315s Selecting previously unselected package libubsan1:s390x.
315s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
315s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
315s Selecting previously unselected package libgcc-14-dev:s390x.
315s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
315s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
315s Selecting previously unselected package gcc-14-s390x-linux-gnu.
315s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
315s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package gcc-14.
316s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
316s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package gcc-s390x-linux-gnu.
316s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
316s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
316s Selecting previously unselected package gcc.
316s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
316s Unpacking gcc (4:14.2.0-1ubuntu1) ...
316s Selecting previously unselected package libstdc++-14-dev:s390x.
316s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
316s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package g++-14-s390x-linux-gnu.
316s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
316s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package g++-14.
316s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
316s Unpacking g++-14 (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package g++-s390x-linux-gnu.
316s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
316s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
316s Selecting previously unselected package g++.
316s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
316s Unpacking g++ (4:14.2.0-1ubuntu1) ...
316s Selecting previously unselected package build-essential.
316s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
316s Unpacking build-essential (12.10ubuntu1) ...
316s Selecting previously unselected package dctrl-tools.
316s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
316s Unpacking dctrl-tools (2.24-3build3) ...
316s Selecting previously unselected package libfreetype6:s390x.
316s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
316s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
316s Selecting previously unselected package fonts-dejavu-mono.
316s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
316s Unpacking fonts-dejavu-mono (2.37-8) ...
316s Selecting previously unselected package fonts-dejavu-core.
316s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
316s Unpacking fonts-dejavu-core (2.37-8) ...
316s Selecting previously unselected package fontconfig-config.
316s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
316s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
316s Selecting previously unselected package libfontconfig1:s390x.
316s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
316s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
316s Selecting previously unselected package fontconfig.
316s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
316s Unpacking fontconfig (2.15.0-2ubuntu1) ...
316s Selecting previously unselected package libgfortran5:s390x.
316s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
316s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
316s Selecting previously unselected package libgfortran-14-dev:s390x.
316s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
316s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
316s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
316s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package gfortran-14.
316s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
316s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
316s Selecting previously unselected package gfortran-s390x-linux-gnu.
316s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
316s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
316s Selecting previously unselected package gfortran.
316s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
316s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
316s Selecting previously unselected package icu-devtools.
316s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
316s Unpacking icu-devtools (76.1-1ubuntu2) ...
317s Selecting previously unselected package libblas3:s390x.
317s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
317s Unpacking libblas3:s390x (3.12.1-2) ...
317s Selecting previously unselected package libblas-dev:s390x.
317s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
317s Unpacking libblas-dev:s390x (3.12.1-2) ...
317s Selecting previously unselected package libbz2-dev:s390x.
317s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
317s Unpacking libbz2-dev:s390x (1.0.8-6) ...
317s Selecting previously unselected package libpixman-1-0:s390x.
317s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
317s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
317s Selecting previously unselected package libxcb-render0:s390x.
317s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
317s Unpacking libxcb-render0:s390x (1.17.0-2) ...
317s Selecting previously unselected package libxcb-shm0:s390x.
317s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
317s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
317s Selecting previously unselected package libxrender1:s390x.
317s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
317s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
317s Selecting previously unselected package libcairo2:s390x.
317s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
317s Unpacking libcairo2:s390x (1.18.2-2) ...
317s Selecting previously unselected package libdatrie1:s390x.
317s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
317s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
317s Selecting previously unselected package libdeflate0:s390x.
317s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
317s Unpacking libdeflate0:s390x (1.23-1) ...
317s Selecting previously unselected package libdeflate-dev:s390x.
317s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
317s Unpacking libdeflate-dev:s390x (1.23-1) ...
317s Selecting previously unselected package libgraphite2-3:s390x.
317s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
317s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
317s Selecting previously unselected package libharfbuzz0b:s390x.
317s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
317s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
317s Selecting previously unselected package x11-common.
317s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
317s Unpacking x11-common (1:7.7+23ubuntu3) ...
317s Selecting previously unselected package libice6:s390x.
317s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
317s Unpacking libice6:s390x (2:1.1.1-1) ...
317s Selecting previously unselected package libicu-dev:s390x.
317s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
317s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
317s Selecting previously unselected package libjpeg-turbo8:s390x.
317s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
317s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
317s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
317s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
317s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
317s Selecting previously unselected package libjpeg8:s390x.
317s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
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317s Selecting previously unselected package libjpeg8-dev:s390x.
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317s Selecting previously unselected package libjpeg-dev:s390x.
317s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
317s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
317s Selecting previously unselected package liblapack3:s390x.
317s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
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317s Selecting previously unselected package liblapack-dev:s390x.
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317s Unpacking liblapack-dev:s390x (3.12.1-2) ...
317s Selecting previously unselected package libncurses-dev:s390x.
317s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
317s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
317s Selecting previously unselected package libthai-data.
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317s Selecting previously unselected package libthai0:s390x.
317s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ...
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317s Selecting previously unselected package libpango-1.0-0:s390x.
317s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
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317s Selecting previously unselected package libpangoft2-1.0-0:s390x.
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317s Selecting previously unselected package libpangocairo-1.0-0:s390x.
317s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
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317s Selecting previously unselected package libpaper2:s390x.
317s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
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317s Selecting previously unselected package libpaper-utils.
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317s Selecting previously unselected package libpcre2-16-0:s390x.
317s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ...
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317s Selecting previously unselected package libpcre2-32-0:s390x.
317s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ...
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317s Selecting previously unselected package libpcre2-posix3:s390x.
317s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ...
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317s Selecting previously unselected package libpcre2-dev:s390x.
317s Preparing to unpack .../070-libpcre2-dev_10.45-1_s390x.deb ...
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317s Selecting previously unselected package libpkgconf3:s390x.
317s Preparing to unpack .../071-libpkgconf3_1.8.1-4_s390x.deb ...
317s Unpacking libpkgconf3:s390x (1.8.1-4) ...
317s Selecting previously unselected package zlib1g-dev:s390x.
317s Preparing to unpack .../072-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
317s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
317s Selecting previously unselected package libpng-dev:s390x.
317s Preparing to unpack .../073-libpng-dev_1.6.47-1_s390x.deb ...
317s Unpacking libpng-dev:s390x (1.6.47-1) ...
317s Selecting previously unselected package libreadline-dev:s390x.
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317s Unpacking libreadline-dev:s390x (8.2-6) ...
317s Selecting previously unselected package libsharpyuv0:s390x.
317s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ...
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317s Selecting previously unselected package libsm6:s390x.
317s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ...
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317s Selecting previously unselected package libtcl8.6:s390x.
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317s Selecting previously unselected package libjbig0:s390x.
318s Preparing to unpack .../078-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
318s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
318s Selecting previously unselected package libwebp7:s390x.
318s Preparing to unpack .../079-libwebp7_1.5.0-0.1_s390x.deb ...
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318s Selecting previously unselected package libtiff6:s390x.
318s Preparing to unpack .../080-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
318s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
318s Selecting previously unselected package libxft2:s390x.
318s Preparing to unpack .../081-libxft2_2.3.6-1build1_s390x.deb ...
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318s Selecting previously unselected package libxss1:s390x.
318s Preparing to unpack .../082-libxss1_1%3a1.2.3-1build3_s390x.deb ...
318s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
318s Selecting previously unselected package libtk8.6:s390x.
318s Preparing to unpack .../083-libtk8.6_8.6.16-1_s390x.deb ...
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318s Selecting previously unselected package libxt6t64:s390x.
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318s Selecting previously unselected package zip.
318s Preparing to unpack .../085-zip_3.0-14ubuntu2_s390x.deb ...
318s Unpacking zip (3.0-14ubuntu2) ...
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318s Preparing to unpack .../086-unzip_6.0-28ubuntu6_s390x.deb ...
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318s Selecting previously unselected package xdg-utils.
318s Preparing to unpack .../087-xdg-utils_1.2.1-2ubuntu1_all.deb ...
318s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
318s Selecting previously unselected package r-base-core.
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318s Unpacking r-base-core (4.4.3-1) ...
318s Selecting previously unselected package r-cran-littler.
318s Preparing to unpack .../089-r-cran-littler_0.3.20-2_s390x.deb ...
318s Unpacking r-cran-littler (0.3.20-2) ...
318s Selecting previously unselected package littler.
318s Preparing to unpack .../090-littler_0.3.20-2_all.deb ...
318s Unpacking littler (0.3.20-2) ...
318s Selecting previously unselected package liblzma-dev:s390x.
318s Preparing to unpack .../091-liblzma-dev_5.6.4-1_s390x.deb ...
318s Unpacking liblzma-dev:s390x (5.6.4-1) ...
318s Selecting previously unselected package pkgconf-bin.
318s Preparing to unpack .../092-pkgconf-bin_1.8.1-4_s390x.deb ...
318s Unpacking pkgconf-bin (1.8.1-4) ...
318s Selecting previously unselected package pkgconf:s390x.
318s Preparing to unpack .../093-pkgconf_1.8.1-4_s390x.deb ...
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318s Selecting previously unselected package libtirpc-dev:s390x.
318s Preparing to unpack .../094-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
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318s Selecting previously unselected package r-base-dev.
318s Preparing to unpack .../095-r-base-dev_4.4.3-1_all.deb ...
318s Unpacking r-base-dev (4.4.3-1) ...
318s Selecting previously unselected package pkg-r-autopkgtest.
318s Preparing to unpack .../096-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
318s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
318s Selecting previously unselected package r-bioc-biocgenerics.
318s Preparing to unpack .../097-r-bioc-biocgenerics_0.52.0-2_all.deb ...
318s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
318s Selecting previously unselected package r-bioc-biobase.
318s Preparing to unpack .../098-r-bioc-biobase_2.66.0-2_s390x.deb ...
318s Unpacking r-bioc-biobase (2.66.0-2) ...
318s Selecting previously unselected package r-cran-pkgkitten.
318s Preparing to unpack .../099-r-cran-pkgkitten_0.2.4-1_all.deb ...
318s Unpacking r-cran-pkgkitten (0.2.4-1) ...
318s Selecting previously unselected package r-cran-rcpp.
318s Preparing to unpack .../100-r-cran-rcpp_1.0.14-1_s390x.deb ...
318s Unpacking r-cran-rcpp (1.0.14-1) ...
318s Selecting previously unselected package r-bioc-rots.
318s Preparing to unpack .../101-r-bioc-rots_1.34.0-2_s390x.deb ...
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318s Selecting previously unselected package r-cran-brio.
318s Preparing to unpack .../102-r-cran-brio_1.1.5-1_s390x.deb ...
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318s Selecting previously unselected package r-cran-ps.
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318s Selecting previously unselected package r-cran-r6.
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318s Selecting previously unselected package r-cran-processx.
318s Preparing to unpack .../105-r-cran-processx_3.8.6-1_s390x.deb ...
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318s Selecting previously unselected package r-cran-callr.
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318s Selecting previously unselected package r-cran-cli.
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318s Selecting previously unselected package r-cran-crayon.
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319s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
319s Setting up libpixman-1-0:s390x (0.44.0-3) ...
319s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
319s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
319s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
319s Setting up libdatrie1:s390x (0.2.13-3build1) ...
319s Setting up libxcb-render0:s390x (1.17.0-2) ...
319s Setting up unzip (6.0-28ubuntu6) ...
319s Setting up x11-common (1:7.7+23ubuntu3) ...
319s Setting up libdeflate0:s390x (1.23-1) ...
319s Setting up libxcb-shm0:s390x (1.17.0-2) ...
319s Setting up libreadline-dev:s390x (8.2-6) ...
319s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
319s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
319s Setting up libpcre2-16-0:s390x (10.45-1) ...
319s Setting up zip (3.0-14ubuntu2) ...
319s Setting up libpcre2-32-0:s390x (10.45-1) ...
319s Setting up libblas3:s390x (3.12.1-2) ...
319s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
319s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
319s Setting up libpkgconf3:s390x (1.8.1-4) ...
319s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
319s Setting up fonts-dejavu-mono (2.37-8) ...
319s Setting up libmpc3:s390x (1.3.1-1build2) ...
319s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
319s Setting up icu-devtools (76.1-1ubuntu2) ...
319s Setting up fonts-dejavu-core (2.37-8) ...
319s Setting up pkgconf-bin (1.8.1-4) ...
319s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
319s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
319s Setting up libwebp7:s390x (1.5.0-0.1) ...
319s Setting up liblzma-dev:s390x (5.6.4-1) ...
319s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
319s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
319s Setting up libpcre2-posix3:s390x (10.45-1) ...
319s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
319s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
319s Setting up libthai-data (0.1.29-2build1) ...
319s Setting up libxss1:s390x (1:1.2.3-1build3) ...
319s Setting up libpaper2:s390x (2.2.5-0.3) ...
319s Setting up libisl23:s390x (0.27-1) ...
319s Setting up libdeflate-dev:s390x (1.23-1) ...
319s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
319s Setting up xdg-utils (1.2.1-2ubuntu1) ...
319s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
319s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
319s Setting up libblas-dev:s390x (3.12.1-2) ...
319s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
319s Setting up dctrl-tools (2.24-3build3) ...
319s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
319s Setting up libbz2-dev:s390x (1.0.8-6) ...
319s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
319s Setting up libice6:s390x (2:1.1.1-1) ...
319s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
319s Setting up liblapack3:s390x (3.12.1-2) ...
319s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
319s Setting up libpcre2-dev:s390x (10.45-1) ...
319s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
319s Setting up libpng-dev:s390x (1.6.47-1) ...
319s Setting up libpaper-utils (2.2.5-0.3) ...
319s Setting up pkgconf:s390x (1.8.1-4) ...
319s Setting up libthai0:s390x (0.1.29-2build1) ...
319s Setting up liblapack-dev:s390x (3.12.1-2) ...
319s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
319s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
319s Setting up cpp-14 (14.2.0-17ubuntu3) ...
319s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
319s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
319s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
319s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
319s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
319s Setting up libsm6:s390x (2:1.2.4-1) ...
319s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
319s Setting up fontconfig (2.15.0-2ubuntu1) ...
321s Regenerating fonts cache... done.
321s Setting up libxft2:s390x (2.3.6-1build1) ...
321s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
321s Setting up libtk8.6:s390x (8.6.16-1) ...
321s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
321s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
321s Setting up libcairo2:s390x (1.18.2-2) ...
321s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
321s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
321s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
321s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
321s Setting up cpp (4:14.2.0-1ubuntu1) ...
321s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
321s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
321s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
321s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
321s Setting up gcc-14 (14.2.0-17ubuntu3) ...
321s Setting up r-base-core (4.4.3-1) ...
321s Creating config file /etc/R/Renviron with new version
321s Setting up r-cran-crayon (1.5.3-1) ...
321s Setting up r-cran-ps (1.9.0-1) ...
321s Setting up g++-14 (14.2.0-17ubuntu3) ...
321s Setting up r-cran-r6 (2.6.1-1) ...
321s Setting up r-cran-pkgkitten (0.2.4-1) ...
321s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
321s Setting up r-cran-magrittr (2.0.3-1) ...
321s Setting up r-cran-littler (0.3.20-2) ...
321s Setting up r-cran-fs (1.6.5+dfsg-1) ...
321s Setting up r-cran-rcpp (1.0.14-1) ...
321s Setting up r-cran-brio (1.1.5-1) ...
321s Setting up r-cran-diffobj (0.3.5-1) ...
321s Setting up r-bioc-biocgenerics (0.52.0-2) ...
321s Setting up r-cran-rlang (1.1.5-1) ...
321s Setting up littler (0.3.20-2) ...
321s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
321s Setting up r-cran-withr (3.0.2+dfsg-1) ...
321s Setting up r-cran-processx (3.8.6-1) ...
321s Setting up r-cran-praise (1.0.0-4build1) ...
321s Setting up r-cran-digest (0.6.37-1) ...
321s Setting up r-cran-evaluate (1.0.3-1) ...
321s Setting up r-cran-glue (1.8.0-1) ...
321s Setting up r-cran-cli (3.6.4-1) ...
321s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
321s Setting up r-cran-rprojroot (2.0.4-2) ...
321s Setting up gcc (4:14.2.0-1ubuntu1) ...
321s Setting up r-bioc-biobase (2.66.0-2) ...
321s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
321s Setting up r-bioc-rots (1.34.0-2) ...
321s Setting up r-cran-waldo (0.6.1-2) ...
321s Setting up g++ (4:14.2.0-1ubuntu1) ...
321s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
321s Setting up build-essential (12.10ubuntu1) ...
321s Setting up r-cran-callr (3.7.6-1) ...
321s Setting up r-cran-desc (1.4.3-1) ...
321s Setting up gfortran (4:14.2.0-1ubuntu1) ...
321s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
321s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
321s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
321s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
321s Setting up r-cran-pkgbuild (1.4.6-1) ...
321s Setting up r-cran-pkgload (1.4.0-1) ...
321s Setting up r-base-dev (4.4.3-1) ...
321s Setting up r-cran-testthat (3.2.3-1) ...
321s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
321s Processing triggers for libc-bin (2.41-1ubuntu2) ...
321s Processing triggers for man-db (2.13.0-1) ...
323s Processing triggers for install-info (7.1.1-1) ...
324s autopkgtest [17:51:43]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
324s autopkgtest [17:51:43]: test pkg-r-autopkgtest: [-----------------------
324s Test: Try to load the R library ROTS
324s 
324s R version 4.4.3 (2025-02-28) -- "Trophy Case"
324s Copyright (C) 2025 The R Foundation for Statistical Computing
324s Platform: s390x-ibm-linux-gnu
324s 
324s R is free software and comes with ABSOLUTELY NO WARRANTY.
324s You are welcome to redistribute it under certain conditions.
324s Type 'license()' or 'licence()' for distribution details.
324s 
324s R is a collaborative project with many contributors.
324s Type 'contributors()' for more information and
324s 'citation()' on how to cite R or R packages in publications.
324s 
324s Type 'demo()' for some demos, 'help()' for on-line help, or
324s 'help.start()' for an HTML browser interface to help.
324s Type 'q()' to quit R.
324s 
324s > library('ROTS')
324s > 
324s > 
324s Other tests are currently unsupported!
324s They will be progressively added.
324s autopkgtest [17:51:43]: test pkg-r-autopkgtest: -----------------------]
325s autopkgtest [17:51:44]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
325s pkg-r-autopkgtest    PASS
325s autopkgtest [17:51:44]: @@@@@@@@@@@@@@@@@@@@ summary
325s pkg-r-autopkgtest    PASS
344s nova [W] Using flock in prodstack6-s390x
344s Creating nova instance adt-plucky-s390x-r-bioc-rots-20250315-174619-juju-7f2275-prod-proposed-migration-environment-2-f134c851-73d6-4e65-b743-1668816b1d76 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
344s nova [W] Timed out waiting for 71e1d39a-a82e-487c-925d-dd7d58505e21 to get deleted.