0s autopkgtest [17:46:19]: starting date and time: 2025-03-15 17:46:19+0000
  0s autopkgtest [17:46:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:46:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.54r__iye/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rhtslib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-23.secgroup --name adt-plucky-s390x-r-bioc-rhtslib-20250315-174619-juju-7f2275-prod-proposed-migration-environment-2-6566ecf5-b4de-4269-8546-8531ffc05bb2 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
436s autopkgtest [17:53:35]: testbed dpkg architecture: s390x
437s autopkgtest [17:53:36]: testbed apt version: 2.9.33
437s autopkgtest [17:53:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup
437s autopkgtest [17:53:36]: testbed release detected to be: None
438s autopkgtest [17:53:37]: updating testbed package index (apt update)
438s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
438s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
438s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
439s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
439s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
439s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
439s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
439s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
439s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
439s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
439s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
439s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
440s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
440s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
440s Fetched 1073 kB in 2s (657 kB/s)
440s Reading package lists...
441s Reading package lists...
441s Building dependency tree...
441s Reading state information...
441s Calculating upgrade...
441s Calculating upgrade...
441s The following packages were automatically installed and are no longer required:
441s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
441s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
441s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
441s   linux-tools-6.11.0-8-generic
441s Use 'sudo apt autoremove' to remove them.
441s The following packages will be upgraded:
441s   pinentry-curses python3-jinja2 strace
441s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
441s Need to get 652 kB of archives.
441s After this operation, 27.6 kB of additional disk space will be used.
441s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
442s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
442s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
443s Fetched 652 kB in 1s (610 kB/s)
443s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
443s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
443s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
443s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
443s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
443s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
443s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
443s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
443s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
443s Setting up strace (6.13+ds-1ubuntu1) ...
443s Processing triggers for man-db (2.13.0-1) ...
443s Reading package lists...
444s Building dependency tree...
444s Reading state information...
444s Solving dependencies...
444s The following packages will be REMOVED:
444s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
444s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
444s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
444s   linux-tools-6.11.0-8-generic*
444s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
444s After this operation, 167 MB disk space will be freed.
444s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
444s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
444s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
444s Removing libpython3.12t64:s390x (3.12.9-1) ...
444s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
444s Removing libnsl2:s390x (1.3.0-3build3) ...
444s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
444s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
444s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
445s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
445s Processing triggers for libc-bin (2.41-1ubuntu1) ...
445s (Reading database ... 
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(Reading database ... 85%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
445s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
445s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
445s autopkgtest [17:53:44]: upgrading testbed (apt dist-upgrade and autopurge)
445s Reading package lists...
445s Building dependency tree...
445s Reading state information...
446s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
446s Starting 2 pkgProblemResolver with broken count: 0
446s Done
446s Entering ResolveByKeep
446s 
446s Calculating upgrade...
446s The following packages will be upgraded:
446s   libc-bin libc-dev-bin libc6 libc6-dev locales
446s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
446s Need to get 9512 kB of archives.
446s After this operation, 8192 B of additional disk space will be used.
446s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
448s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
448s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
452s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
452s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
457s Preconfiguring packages ...
457s Fetched 9512 kB in 11s (865 kB/s)
457s (Reading database ... 
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(Reading database ... 55%
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
457s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
457s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
457s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
457s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
457s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
458s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
458s Setting up libc6:s390x (2.41-1ubuntu2) ...
458s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
458s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
458s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
458s Setting up libc-bin (2.41-1ubuntu2) ...
458s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
458s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
458s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
458s Setting up locales (2.41-1ubuntu2) ...
458s Generating locales (this might take a while)...
459s   en_US.UTF-8... done
459s Generation complete.
459s Setting up libc-dev-bin (2.41-1ubuntu2) ...
459s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
459s Processing triggers for man-db (2.13.0-1) ...
460s Processing triggers for systemd (257.3-1ubuntu3) ...
461s Reading package lists...
461s Building dependency tree...
461s Reading state information...
461s Starting pkgProblemResolver with broken count: 0
461s Starting 2 pkgProblemResolver with broken count: 0
461s Done
461s Solving dependencies...
461s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
461s autopkgtest [17:54:00]: rebooting testbed after setup commands that affected boot
480s autopkgtest [17:54:19]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
482s autopkgtest [17:54:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rhtslib
489s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (dsc) [2153 B]
489s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (tar) [4298 kB]
489s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (diff) [4588 B]
489s gpgv: Signature made Sat Jan 11 21:12:47 2025 UTC
489s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
489s gpgv:                issuer "crusoe@debian.org"
489s gpgv: Can't check signature: No public key
489s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rhtslib_3.2.0+dfsg-2.dsc: no acceptable signature found
490s autopkgtest [17:54:29]: testing package r-bioc-rhtslib version 3.2.0+dfsg-2
490s autopkgtest [17:54:29]: build not needed
495s autopkgtest [17:54:34]: test pkg-r-autopkgtest: preparing testbed
495s Reading package lists...
495s Building dependency tree...
495s Reading state information...
496s Starting pkgProblemResolver with broken count: 0
496s Starting 2 pkgProblemResolver with broken count: 0
496s Done
496s The following NEW packages will be installed:
496s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
496s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
496s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
496s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
496s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
496s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
496s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
496s   libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0
496s   libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev libgfortran5
496s   libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl
496s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
496s   libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3
496s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
496s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
496s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
496s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
496s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0
496s   liblzma-dev libmpc3 libmpfi0 libncurses-dev libpango-1.0-0
496s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
496s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
496s   libpng-dev libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6
496s   libstdc++-14-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
496s   libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7
496s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
496s   libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
496s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
496s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle
496s   r-bioc-biocversion r-bioc-rhtslib r-bioc-zlibbioc r-cran-base64enc
496s   r-cran-biocmanager r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli
496s   r-cran-commonmark r-cran-crayon r-cran-digest r-cran-evaluate r-cran-fastmap
496s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
496s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
496s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime
496s   r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp
496s   r-cran-rlang r-cran-rmarkdown r-cran-sass r-cran-shiny r-cran-sourcetools
496s   r-cran-tinytex r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils
496s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
496s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
496s 0 upgraded, 192 newly installed, 0 to remove and 0 not upgraded.
496s Need to get 332 MB of archives.
496s After this operation, 1126 MB of additional disk space will be used.
496s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
497s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
497s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
508s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
508s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
508s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
508s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
508s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
508s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
508s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
511s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
512s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
513s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
530s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
530s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
530s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
530s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
532s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
543s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
543s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
543s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
543s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
543s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
543s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
543s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
544s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
544s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
544s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
545s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
545s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
545s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
545s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
550s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
552s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
552s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
553s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
562s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
562s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
562s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
562s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
562s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B]
562s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
562s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
562s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
563s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
563s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
563s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
563s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
563s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
563s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
563s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
563s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
564s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
564s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
564s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
564s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
564s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
565s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
565s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
565s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
577s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
577s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
577s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
577s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
577s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
577s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
577s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
577s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
578s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
578s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
578s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
578s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
579s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
579s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
579s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
579s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
579s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
579s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
579s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
579s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
579s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
580s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
582s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
588s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
588s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
588s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
588s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
589s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
589s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
589s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
589s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
589s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
589s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
589s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
589s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
589s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
589s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
590s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
590s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
591s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
591s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
591s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
591s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
591s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
591s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
591s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
591s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
592s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
593s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
593s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
593s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
593s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
593s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
593s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
593s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
594s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
594s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
594s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
594s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
594s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
594s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
594s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
595s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
595s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
595s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
622s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
622s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
622s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
622s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
622s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
622s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
622s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
672s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
672s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
672s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
672s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
672s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
672s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
672s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
673s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
673s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
673s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
673s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
675s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
675s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
675s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
676s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
676s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
676s Get:149 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
680s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB]
681s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
681s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
681s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
681s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
683s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
683s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
683s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
683s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
683s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
683s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
683s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
683s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
684s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
688s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
689s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
689s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
690s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
690s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
691s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
691s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
692s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
692s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
692s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
693s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
693s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
693s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
693s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB]
693s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
694s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
696s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
698s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
699s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
699s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
699s Get:184 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
699s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
707s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
728s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
730s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
788s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
788s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
788s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
788s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB]
790s Preconfiguring packages ...
790s Fetched 332 MB in 4min 53s (1130 kB/s)
790s Selecting previously unselected package libisl23:s390x.
790s (Reading database ... 
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(Reading database ... 65%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
790s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
790s Unpacking libisl23:s390x (0.27-1) ...
790s Selecting previously unselected package libmpc3:s390x.
790s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
790s Unpacking libmpc3:s390x (1.3.1-1build2) ...
790s Selecting previously unselected package cpp-14-s390x-linux-gnu.
790s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
790s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
790s Selecting previously unselected package cpp-14.
790s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
790s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
790s Selecting previously unselected package cpp-s390x-linux-gnu.
790s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
790s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
790s Selecting previously unselected package cpp.
790s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
790s Unpacking cpp (4:14.2.0-1ubuntu1) ...
790s Selecting previously unselected package libcc1-0:s390x.
790s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
790s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
790s Selecting previously unselected package libgomp1:s390x.
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791s Selecting previously unselected package libgfortran5:s390x.
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791s Selecting previously unselected package liblatex-tounicode-perl.
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791s Selecting previously unselected package libblas3:s390x.
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792s Selecting previously unselected package libcairo2:s390x.
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792s Selecting previously unselected package libdatrie1:s390x.
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792s Selecting previously unselected package libgraphite2-3:s390x.
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792s Selecting previously unselected package libice6:s390x.
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792s Selecting previously unselected package libjpeg-turbo8:s390x.
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792s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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792s Selecting previously unselected package libpaper2:s390x.
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793s Selecting previously unselected package libpng-dev:s390x.
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793s Selecting previously unselected package libreadline-dev:s390x.
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793s Selecting previously unselected package libsharpyuv0:s390x.
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793s Selecting previously unselected package libtcl8.6:s390x.
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793s Unpacking libteckit0:s390x (2.5.12+ds1-1) ...
793s Selecting previously unselected package libtexlua53-5:s390x.
793s Preparing to unpack .../108-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ...
793s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
793s Selecting previously unselected package libjbig0:s390x.
793s Preparing to unpack .../109-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
793s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
793s Selecting previously unselected package libwebp7:s390x.
793s Preparing to unpack .../110-libwebp7_1.5.0-0.1_s390x.deb ...
793s Unpacking libwebp7:s390x (1.5.0-0.1) ...
793s Selecting previously unselected package libtiff6:s390x.
793s Preparing to unpack .../111-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
793s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
793s Selecting previously unselected package libxft2:s390x.
793s Preparing to unpack .../112-libxft2_2.3.6-1build1_s390x.deb ...
793s Unpacking libxft2:s390x (2.3.6-1build1) ...
793s Selecting previously unselected package libxss1:s390x.
793s Preparing to unpack .../113-libxss1_1%3a1.2.3-1build3_s390x.deb ...
793s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
793s Selecting previously unselected package libtk8.6:s390x.
793s Preparing to unpack .../114-libtk8.6_8.6.16-1_s390x.deb ...
793s Unpacking libtk8.6:s390x (8.6.16-1) ...
793s Selecting previously unselected package libxt6t64:s390x.
793s Preparing to unpack .../115-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
793s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
793s Selecting previously unselected package libxmu6:s390x.
793s Preparing to unpack .../116-libxmu6_2%3a1.1.3-3build2_s390x.deb ...
793s Unpacking libxmu6:s390x (2:1.1.3-3build2) ...
793s Selecting previously unselected package libxpm4:s390x.
793s Preparing to unpack .../117-libxpm4_1%3a3.5.17-1build2_s390x.deb ...
793s Unpacking libxpm4:s390x (1:3.5.17-1build2) ...
793s Selecting previously unselected package libxaw7:s390x.
793s Preparing to unpack .../118-libxaw7_2%3a1.0.16-1_s390x.deb ...
793s Unpacking libxaw7:s390x (2:1.0.16-1) ...
793s Selecting previously unselected package libxi6:s390x.
793s Preparing to unpack .../119-libxi6_2%3a1.8.2-1_s390x.deb ...
793s Unpacking libxi6:s390x (2:1.8.2-1) ...
793s Selecting previously unselected package libzzip-0-13t64:s390x.
793s Preparing to unpack .../120-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ...
793s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
793s Selecting previously unselected package zip.
793s Preparing to unpack .../121-zip_3.0-14ubuntu2_s390x.deb ...
793s Unpacking zip (3.0-14ubuntu2) ...
793s Selecting previously unselected package unzip.
793s Preparing to unpack .../122-unzip_6.0-28ubuntu6_s390x.deb ...
793s Unpacking unzip (6.0-28ubuntu6) ...
793s Selecting previously unselected package xdg-utils.
793s Preparing to unpack .../123-xdg-utils_1.2.1-2ubuntu1_all.deb ...
793s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
793s Selecting previously unselected package r-base-core.
793s Preparing to unpack .../124-r-base-core_4.4.3-1_s390x.deb ...
793s Unpacking r-base-core (4.4.3-1) ...
793s Selecting previously unselected package r-cran-littler.
793s Preparing to unpack .../125-r-cran-littler_0.3.20-2_s390x.deb ...
793s Unpacking r-cran-littler (0.3.20-2) ...
793s Selecting previously unselected package littler.
793s Preparing to unpack .../126-littler_0.3.20-2_all.deb ...
793s Unpacking littler (0.3.20-2) ...
793s Selecting previously unselected package node-bootstrap-sass.
793s Preparing to unpack .../127-node-bootstrap-sass_3.4.3-2_all.deb ...
793s Unpacking node-bootstrap-sass (3.4.3-2) ...
793s Selecting previously unselected package node-html5shiv.
793s Preparing to unpack .../128-node-html5shiv_3.7.3+dfsg-5_all.deb ...
793s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
793s Selecting previously unselected package node-normalize.css.
793s Preparing to unpack .../129-node-normalize.css_8.0.1-5_all.deb ...
793s Unpacking node-normalize.css (8.0.1-5) ...
793s Selecting previously unselected package pandoc-data.
793s Preparing to unpack .../130-pandoc-data_3.1.11.1-3build1_all.deb ...
793s Unpacking pandoc-data (3.1.11.1-3build1) ...
793s Selecting previously unselected package pandoc.
793s Preparing to unpack .../131-pandoc_3.1.11.1+ds-2_s390x.deb ...
793s Unpacking pandoc (3.1.11.1+ds-2) ...
794s Selecting previously unselected package liblzma-dev:s390x.
794s Preparing to unpack .../132-liblzma-dev_5.6.4-1_s390x.deb ...
794s Unpacking liblzma-dev:s390x (5.6.4-1) ...
794s Selecting previously unselected package pkgconf-bin.
794s Preparing to unpack .../133-pkgconf-bin_1.8.1-4_s390x.deb ...
794s Unpacking pkgconf-bin (1.8.1-4) ...
794s Selecting previously unselected package pkgconf:s390x.
794s Preparing to unpack .../134-pkgconf_1.8.1-4_s390x.deb ...
794s Unpacking pkgconf:s390x (1.8.1-4) ...
794s Selecting previously unselected package libtirpc-dev:s390x.
794s Preparing to unpack .../135-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
794s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
794s Selecting previously unselected package r-base-dev.
794s Preparing to unpack .../136-r-base-dev_4.4.3-1_all.deb ...
794s Unpacking r-base-dev (4.4.3-1) ...
794s Selecting previously unselected package pkg-r-autopkgtest.
794s Preparing to unpack .../137-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
794s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
794s Selecting previously unselected package r-bioc-biocgenerics.
794s Preparing to unpack .../138-r-bioc-biocgenerics_0.52.0-2_all.deb ...
794s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
794s Selecting previously unselected package r-cran-base64enc.
794s Preparing to unpack .../139-r-cran-base64enc_0.1-3-3_s390x.deb ...
794s Unpacking r-cran-base64enc (0.1-3-3) ...
794s Selecting previously unselected package r-cran-digest.
794s Preparing to unpack .../140-r-cran-digest_0.6.37-1_s390x.deb ...
794s Unpacking r-cran-digest (0.6.37-1) ...
794s Selecting previously unselected package r-cran-fastmap.
794s Preparing to unpack .../141-r-cran-fastmap_1.2.0-1_s390x.deb ...
794s Unpacking r-cran-fastmap (1.2.0-1) ...
794s Selecting previously unselected package r-cran-rlang.
794s Preparing to unpack .../142-r-cran-rlang_1.1.5-1_s390x.deb ...
794s Unpacking r-cran-rlang (1.1.5-1) ...
794s Selecting previously unselected package r-cran-htmltools.
794s Preparing to unpack .../143-r-cran-htmltools_0.5.8.1-1_s390x.deb ...
794s Unpacking r-cran-htmltools (0.5.8.1-1) ...
795s Selecting previously unselected package r-cran-evaluate.
795s Preparing to unpack .../144-r-cran-evaluate_1.0.3-1_all.deb ...
795s Unpacking r-cran-evaluate (1.0.3-1) ...
795s Selecting previously unselected package r-cran-xfun.
795s Preparing to unpack .../145-r-cran-xfun_0.51+dfsg-1_s390x.deb ...
795s Unpacking r-cran-xfun (0.51+dfsg-1) ...
795s Selecting previously unselected package r-cran-highr.
795s Preparing to unpack .../146-r-cran-highr_0.11+dfsg-1_all.deb ...
795s Unpacking r-cran-highr (0.11+dfsg-1) ...
795s Selecting previously unselected package r-cran-yaml.
795s Preparing to unpack .../147-r-cran-yaml_2.3.10-1_s390x.deb ...
795s Unpacking r-cran-yaml (2.3.10-1) ...
795s Selecting previously unselected package libjs-mathjax.
795s Preparing to unpack .../148-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
795s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
795s Selecting previously unselected package r-cran-knitr.
795s Preparing to unpack .../149-r-cran-knitr_1.49+dfsg-1_all.deb ...
795s Unpacking r-cran-knitr (1.49+dfsg-1) ...
795s Selecting previously unselected package r-cran-cachem.
795s Preparing to unpack .../150-r-cran-cachem_1.1.0-1_s390x.deb ...
795s Unpacking r-cran-cachem (1.1.0-1) ...
795s Selecting previously unselected package r-cran-jquerylib.
795s Preparing to unpack .../151-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
795s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
795s Selecting previously unselected package r-cran-jsonlite.
795s Preparing to unpack .../152-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
795s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
795s Selecting previously unselected package r-cran-cli.
795s Preparing to unpack .../153-r-cran-cli_3.6.4-1_s390x.deb ...
795s Unpacking r-cran-cli (3.6.4-1) ...
795s Selecting previously unselected package r-cran-glue.
795s Preparing to unpack .../154-r-cran-glue_1.8.0-1_s390x.deb ...
795s Unpacking r-cran-glue (1.8.0-1) ...
795s Selecting previously unselected package r-cran-lifecycle.
795s Preparing to unpack .../155-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
795s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
795s Selecting previously unselected package r-cran-memoise.
795s Preparing to unpack .../156-r-cran-memoise_2.0.1-1_all.deb ...
795s Unpacking r-cran-memoise (2.0.1-1) ...
795s Selecting previously unselected package r-cran-mime.
795s Preparing to unpack .../157-r-cran-mime_0.12-2_s390x.deb ...
795s Unpacking r-cran-mime (0.12-2) ...
795s Selecting previously unselected package r-cran-fs.
795s Preparing to unpack .../158-r-cran-fs_1.6.5+dfsg-1_s390x.deb ...
795s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
795s Selecting previously unselected package r-cran-r6.
795s Preparing to unpack .../159-r-cran-r6_2.6.1-1_all.deb ...
795s Unpacking r-cran-r6 (2.6.1-1) ...
795s Selecting previously unselected package r-cran-rappdirs.
795s Preparing to unpack .../160-r-cran-rappdirs_0.3.3-1_s390x.deb ...
795s Unpacking r-cran-rappdirs (0.3.3-1) ...
795s Selecting previously unselected package r-cran-sass.
795s Preparing to unpack .../161-r-cran-sass_0.4.9+dfsg-1_s390x.deb ...
795s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
795s Selecting previously unselected package r-cran-bslib.
795s Preparing to unpack .../162-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
795s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
795s Selecting previously unselected package r-cran-fontawesome.
795s Preparing to unpack .../163-r-cran-fontawesome_0.5.3-1_all.deb ...
795s Unpacking r-cran-fontawesome (0.5.3-1) ...
795s Selecting previously unselected package r-cran-tinytex.
795s Preparing to unpack .../164-r-cran-tinytex_0.56-1_all.deb ...
795s Unpacking r-cran-tinytex (0.56-1) ...
795s Selecting previously unselected package libjs-modernizr.
795s Preparing to unpack .../165-libjs-modernizr_3.13.0-0.1_all.deb ...
795s Unpacking libjs-modernizr (3.13.0-0.1) ...
795s Selecting previously unselected package r-cran-pkgkitten.
795s Preparing to unpack .../166-r-cran-pkgkitten_0.2.4-1_all.deb ...
795s Unpacking r-cran-pkgkitten (0.2.4-1) ...
795s Selecting previously unselected package r-cran-rcpp.
795s Preparing to unpack .../167-r-cran-rcpp_1.0.14-1_s390x.deb ...
795s Unpacking r-cran-rcpp (1.0.14-1) ...
795s Selecting previously unselected package r-cran-later.
795s Preparing to unpack .../168-r-cran-later_1.4.1+dfsg-1_s390x.deb ...
795s Unpacking r-cran-later (1.4.1+dfsg-1) ...
795s Selecting previously unselected package r-cran-magrittr.
795s Preparing to unpack .../169-r-cran-magrittr_2.0.3-1_s390x.deb ...
795s Unpacking r-cran-magrittr (2.0.3-1) ...
795s Selecting previously unselected package r-cran-promises.
795s Preparing to unpack .../170-r-cran-promises_1.3.2+dfsg-1_s390x.deb ...
795s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
795s Selecting previously unselected package r-cran-httpuv.
795s Preparing to unpack .../171-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ...
795s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
795s Selecting previously unselected package r-cran-xtable.
795s Preparing to unpack .../172-r-cran-xtable_1%3a1.8-4-2_all.deb ...
795s Unpacking r-cran-xtable (1:1.8-4-2) ...
796s Selecting previously unselected package r-cran-sourcetools.
796s Preparing to unpack .../173-r-cran-sourcetools_0.1.7-1-1_s390x.deb ...
796s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
796s Selecting previously unselected package r-cran-crayon.
796s Preparing to unpack .../174-r-cran-crayon_1.5.3-1_all.deb ...
796s Unpacking r-cran-crayon (1.5.3-1) ...
796s Selecting previously unselected package r-cran-withr.
796s Preparing to unpack .../175-r-cran-withr_3.0.2+dfsg-1_all.deb ...
796s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
796s Selecting previously unselected package r-cran-commonmark.
796s Preparing to unpack .../176-r-cran-commonmark_1.9.2-2_s390x.deb ...
796s Unpacking r-cran-commonmark (1.9.2-2) ...
796s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
796s Preparing to unpack .../177-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
796s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
796s Selecting previously unselected package r-cran-shiny.
796s Preparing to unpack .../178-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
796s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
796s Selecting previously unselected package r-cran-rmarkdown.
796s Preparing to unpack .../179-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
796s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
796s Selecting previously unselected package r-cran-bookdown.
796s Preparing to unpack .../180-r-cran-bookdown_0.42+dfsg-1_all.deb ...
796s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
796s Selecting previously unselected package r-cran-biocmanager.
796s Preparing to unpack .../181-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
796s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
796s Selecting previously unselected package tex-common.
796s Preparing to unpack .../182-tex-common_6.19_all.deb ...
796s Unpacking tex-common (6.19) ...
796s Selecting previously unselected package t1utils.
796s Preparing to unpack .../183-t1utils_1.41-4build3_s390x.deb ...
796s Unpacking t1utils (1.41-4build3) ...
796s Selecting previously unselected package texlive-binaries.
796s Preparing to unpack .../184-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ...
796s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
796s Selecting previously unselected package texlive-base.
796s Preparing to unpack .../185-texlive-base_2024.20250114-1_all.deb ...
796s Unpacking texlive-base (2024.20250114-1) ...
797s Selecting previously unselected package texlive-latex-base.
797s Preparing to unpack .../186-texlive-latex-base_2024.20250114-1_all.deb ...
797s Unpacking texlive-latex-base (2024.20250114-1) ...
797s Selecting previously unselected package texlive-bibtex-extra.
797s Preparing to unpack .../187-texlive-bibtex-extra_2024.20250114-1_all.deb ...
797s Unpacking texlive-bibtex-extra (2024.20250114-1) ...
800s Selecting previously unselected package r-bioc-biocversion.
800s Preparing to unpack .../188-r-bioc-biocversion_3.20.0-2_all.deb ...
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800s Selecting previously unselected package r-bioc-biocstyle.
800s Preparing to unpack .../189-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ...
800s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
800s Selecting previously unselected package r-bioc-zlibbioc.
800s Preparing to unpack .../190-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
800s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
800s Selecting previously unselected package r-bioc-rhtslib.
800s Preparing to unpack .../191-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ...
800s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
800s Setting up libjs-json (0~20221030+~1.0.8-1) ...
800s Setting up javascript-common (12) ...
800s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
800s Setting up libpixman-1-0:s390x (0.44.0-3) ...
800s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
800s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
800s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
800s Setting up libxpm4:s390x (1:3.5.17-1build2) ...
800s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
800s Setting up libxi6:s390x (2:1.8.2-1) ...
800s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
800s Setting up libdatrie1:s390x (0.2.13-3build1) ...
800s Setting up libjs-popper.js (1.16.1+ds-6) ...
800s Setting up libxcb-render0:s390x (1.17.0-2) ...
800s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
800s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
800s Setting up libjs-lunr (2.3.9~dfsg-2) ...
800s Setting up unzip (6.0-28ubuntu6) ...
800s Setting up liblatex-tounicode-perl (0.55-1) ...
800s Setting up x11-common (1:7.7+23ubuntu3) ...
800s Setting up node-html5shiv (3.7.3+dfsg-5) ...
800s Setting up libdeflate0:s390x (1.23-1) ...
800s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
800s Setting up libxcb-shm0:s390x (1.17.0-2) ...
800s Setting up libreadline-dev:s390x (8.2-6) ...
800s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
800s Setting up libjs-modernizr (3.13.0-0.1) ...
800s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
800s Setting up libpcre2-16-0:s390x (10.45-1) ...
800s Setting up libjs-es5-shim (4.6.7-2) ...
800s Setting up tex-common (6.19) ...
800s update-language: texlive-base not installed and configured, doing nothing!
800s Setting up libio-string-perl (1.08-4) ...
800s Setting up zip (3.0-14ubuntu2) ...
800s Setting up libpcre2-32-0:s390x (10.45-1) ...
800s Setting up libblas3:s390x (3.12.1-2) ...
800s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
800s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
800s Setting up libpkgconf3:s390x (1.8.1-4) ...
800s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
800s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
800s Setting up libteckit0:s390x (2.5.12+ds1-1) ...
800s Setting up t1utils (1.41-4build3) ...
800s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
800s Setting up libjs-d3 (3.5.17-4) ...
800s Setting up fonts-dejavu-mono (2.37-8) ...
800s Setting up libmpc3:s390x (1.3.1-1build2) ...
800s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
800s Setting up libmpfi0:s390x (1.5.4+ds-4) ...
800s Setting up icu-devtools (76.1-1ubuntu2) ...
800s Setting up fonts-dejavu-core (2.37-8) ...
800s Setting up pkgconf-bin (1.8.1-4) ...
800s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
800s Setting up libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
800s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
800s Setting up libwebp7:s390x (1.5.0-0.1) ...
800s Setting up liblzma-dev:s390x (5.6.4-1) ...
800s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
800s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
800s Setting up libpcre2-posix3:s390x (10.45-1) ...
800s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
800s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
800s Setting up fonts-lmodern (2.005-1) ...
800s Setting up liblua5.4-0:s390x (5.4.7-1) ...
800s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
800s Setting up libthai-data (0.1.29-2build1) ...
800s Setting up node-bootstrap-sass (3.4.3-2) ...
800s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
800s Setting up libxss1:s390x (1:1.2.3-1build3) ...
800s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
800s Setting up libpaper2:s390x (2.2.5-0.3) ...
801s Setting up pandoc-data (3.1.11.1-3build1) ...
801s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
801s Setting up libisl23:s390x (0.27-1) ...
801s Setting up libdeflate-dev:s390x (1.23-1) ...
801s Setting up node-normalize.css (8.0.1-5) ...
801s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
801s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
801s Setting up xdg-utils (1.2.1-2ubuntu1) ...
801s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
801s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
801s Setting up libblas-dev:s390x (3.12.1-2) ...
801s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
801s Setting up dctrl-tools (2.24-3build3) ...
801s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
801s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
801s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
801s Setting up libbz2-dev:s390x (1.0.8-6) ...
801s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
801s Setting up libpotrace0:s390x (1.16-2build1) ...
801s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
801s Setting up libice6:s390x (2:1.1.1-1) ...
801s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
801s Setting up liblapack3:s390x (3.12.1-2) ...
801s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
801s Setting up libpcre2-dev:s390x (10.45-1) ...
801s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
801s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
801s Setting up libpng-dev:s390x (1.6.47-1) ...
801s Setting up libpaper-utils (2.2.5-0.3) ...
801s Setting up libbibtex-parser-perl (1.05+dfsg-1) ...
801s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
801s Setting up pkgconf:s390x (1.8.1-4) ...
801s Setting up libthai0:s390x (0.1.29-2build1) ...
801s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
801s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
801s Setting up pandoc (3.1.11.1+ds-2) ...
801s Setting up liblapack-dev:s390x (3.12.1-2) ...
801s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
801s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
801s Setting up cpp-14 (14.2.0-17ubuntu3) ...
801s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
801s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
801s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
801s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
801s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
801s Setting up libsm6:s390x (2:1.2.4-1) ...
801s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
801s Setting up fontconfig (2.15.0-2ubuntu1) ...
803s Regenerating fonts cache... done.
803s Setting up libxft2:s390x (2.3.6-1build1) ...
803s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
803s Setting up libtk8.6:s390x (8.6.16-1) ...
803s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
803s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
803s Setting up libcairo2:s390x (1.18.2-2) ...
803s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
803s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
803s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
803s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
803s Setting up cpp (4:14.2.0-1ubuntu1) ...
803s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
803s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
803s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
803s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
803s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
803s Setting up libxaw7:s390x (2:1.0.16-1) ...
803s Setting up gcc-14 (14.2.0-17ubuntu3) ...
803s Setting up r-base-core (4.4.3-1) ...
803s Creating config file /etc/R/Renviron with new version
803s Setting up r-cran-crayon (1.5.3-1) ...
803s Setting up r-cran-sourcetools (0.1.7-1-1) ...
803s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
803s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
803s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
803s Setting up r-cran-commonmark (1.9.2-2) ...
803s Setting up g++-14 (14.2.0-17ubuntu3) ...
803s Setting up r-cran-r6 (2.6.1-1) ...
803s Setting up r-cran-pkgkitten (0.2.4-1) ...
803s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
803s Setting up texlive-base (2024.20250114-1) ...
803s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
803s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
803s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
804s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
804s Setting up r-cran-magrittr (2.0.3-1) ...
804s Setting up r-cran-rappdirs (0.3.3-1) ...
804s Setting up r-cran-littler (0.3.20-2) ...
804s Setting up r-cran-fs (1.6.5+dfsg-1) ...
804s Setting up r-cran-rcpp (1.0.14-1) ...
804s Setting up r-bioc-biocgenerics (0.52.0-2) ...
804s Setting up r-cran-rlang (1.1.5-1) ...
804s Setting up littler (0.3.20-2) ...
804s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
804s Setting up r-cran-xfun (0.51+dfsg-1) ...
804s Setting up r-cran-withr (3.0.2+dfsg-1) ...
804s Setting up r-cran-mime (0.12-2) ...
804s Setting up r-cran-base64enc (0.1-3-3) ...
804s Setting up r-cran-digest (0.6.37-1) ...
804s Setting up r-cran-yaml (2.3.10-1) ...
804s Setting up r-cran-evaluate (1.0.3-1) ...
804s Setting up r-cran-highr (0.11+dfsg-1) ...
804s Setting up r-cran-glue (1.8.0-1) ...
804s Setting up r-cran-xtable (1:1.8-4-2) ...
804s Setting up r-cran-cli (3.6.4-1) ...
804s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
804s Setting up r-bioc-biocversion (3.20.0-2) ...
804s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
804s Setting up gcc (4:14.2.0-1ubuntu1) ...
804s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
804s Setting up r-cran-fastmap (1.2.0-1) ...
804s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
804s Setting up texlive-latex-base (2024.20250114-1) ...
804s Setting up r-cran-later (1.4.1+dfsg-1) ...
804s Setting up r-cran-htmltools (0.5.8.1-1) ...
804s Setting up r-cran-tinytex (0.56-1) ...
804s Setting up r-cran-knitr (1.49+dfsg-1) ...
804s Setting up g++ (4:14.2.0-1ubuntu1) ...
804s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
804s Setting up r-cran-cachem (1.1.0-1) ...
804s Setting up r-cran-sass (0.4.9+dfsg-1) ...
804s Setting up build-essential (12.10ubuntu1) ...
804s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
804s Setting up r-cran-fontawesome (0.5.3-1) ...
804s Setting up gfortran (4:14.2.0-1ubuntu1) ...
804s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
804s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
804s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
804s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
804s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
804s Setting up texlive-bibtex-extra (2024.20250114-1) ...
804s Setting up r-cran-memoise (2.0.1-1) ...
804s Setting up r-cran-promises (1.3.2+dfsg-1) ...
804s Setting up r-base-dev (4.4.3-1) ...
804s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
804s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
804s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
804s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
804s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
804s Setting up r-cran-bookdown (0.42+dfsg-1) ...
804s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
804s Processing triggers for libc-bin (2.41-1ubuntu2) ...
804s Processing triggers for man-db (2.13.0-1) ...
805s Processing triggers for install-info (7.1.1-1) ...
805s Processing triggers for tex-common (6.19) ...
805s Running updmap-sys. This may take some time... done.
805s Running mktexlsr /var/lib/texmf ... done.
806s Building format(s) --all.
845s 	This may take some time... done.
846s autopkgtest [18:00:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
846s autopkgtest [18:00:25]: test pkg-r-autopkgtest: [-----------------------
846s Test: Try to load the R library Rhtslib
846s 
846s R version 4.4.3 (2025-02-28) -- "Trophy Case"
846s Copyright (C) 2025 The R Foundation for Statistical Computing
846s Platform: s390x-ibm-linux-gnu
846s 
846s R is free software and comes with ABSOLUTELY NO WARRANTY.
846s You are welcome to redistribute it under certain conditions.
846s Type 'license()' or 'licence()' for distribution details.
846s 
846s R is a collaborative project with many contributors.
846s Type 'contributors()' for more information and
846s 'citation()' on how to cite R or R packages in publications.
846s 
846s Type 'demo()' for some demos, 'help()' for on-line help, or
846s 'help.start()' for an HTML browser interface to help.
846s Type 'q()' to quit R.
846s 
846s > library('Rhtslib')
846s Rhtslib htslib version 1.18
846s > 
846s > 
846s Other tests are currently unsupported!
846s They will be progressively added.
847s autopkgtest [18:00:26]: test pkg-r-autopkgtest: -----------------------]
847s autopkgtest [18:00:26]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
847s pkg-r-autopkgtest    PASS
847s autopkgtest [18:00:26]: @@@@@@@@@@@@@@@@@@@@ summary
847s pkg-r-autopkgtest    PASS
853s nova [W] Using flock in prodstack6-s390x
853s Creating nova instance adt-plucky-s390x-r-bioc-rhtslib-20250315-174619-juju-7f2275-prod-proposed-migration-environment-2-6566ecf5-b4de-4269-8546-8531ffc05bb2 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
853s nova [W] nova quota exceeded (attempt #0)
853s nova [W] Timed out waiting for 76eb02e5-c83d-4c5c-9cd8-7b03881876c2 to get deleted.