0s autopkgtest [17:45:54]: starting date and time: 2025-03-15 17:45:54+0000
  0s autopkgtest [17:45:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:45:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tjxfmgyf/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-pwalign --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-12.secgroup --name adt-plucky-s390x-r-bioc-pwalign-20250315-174554-juju-7f2275-prod-proposed-migration-environment-2-84c9102c-842f-4349-8af2-6755603d6757 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
400s autopkgtest [17:52:34]: testbed dpkg architecture: s390x
400s autopkgtest [17:52:34]: testbed apt version: 2.9.33
401s autopkgtest [17:52:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup
401s autopkgtest [17:52:35]: testbed release detected to be: None
402s autopkgtest [17:52:36]: updating testbed package index (apt update)
402s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
402s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
402s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
402s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
403s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
403s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
403s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
403s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
403s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
403s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
403s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
403s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
403s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
403s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
403s Fetched 1073 kB in 1s (753 kB/s)
404s Reading package lists...
405s Reading package lists...
405s Building dependency tree...
405s Reading state information...
405s Calculating upgrade...
405s Calculating upgrade...
405s The following packages were automatically installed and are no longer required:
405s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
405s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
405s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
405s   linux-tools-6.11.0-8-generic
405s Use 'sudo apt autoremove' to remove them.
405s The following packages will be upgraded:
405s   pinentry-curses python3-jinja2 strace
405s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
405s Need to get 652 kB of archives.
405s After this operation, 27.6 kB of additional disk space will be used.
405s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
406s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
406s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
406s Fetched 652 kB in 1s (658 kB/s)
407s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
407s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
407s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
407s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
407s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
407s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
407s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
407s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
407s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
407s Setting up strace (6.13+ds-1ubuntu1) ...
407s Processing triggers for man-db (2.13.0-1) ...
407s Reading package lists...
408s Building dependency tree...
408s Reading state information...
408s Solving dependencies...
408s The following packages will be REMOVED:
408s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
408s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
408s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
408s   linux-tools-6.11.0-8-generic*
408s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
408s After this operation, 167 MB disk space will be freed.
408s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
408s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
408s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
408s Removing libpython3.12t64:s390x (3.12.9-1) ...
408s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
408s Removing libnsl2:s390x (1.3.0-3build3) ...
408s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
408s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
408s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
409s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
409s Processing triggers for libc-bin (2.41-1ubuntu1) ...
409s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
409s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
409s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
409s autopkgtest [17:52:43]: upgrading testbed (apt dist-upgrade and autopurge)
410s Reading package lists...
410s Building dependency tree...
410s Reading state information...
410s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
410s Starting 2 pkgProblemResolver with broken count: 0
410s Done
410s Entering ResolveByKeep
410s 
410s Calculating upgrade...
410s The following packages will be upgraded:
410s   libc-bin libc-dev-bin libc6 libc6-dev locales
411s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
411s Need to get 9512 kB of archives.
411s After this operation, 8192 B of additional disk space will be used.
411s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
412s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
412s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
415s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
416s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
421s Preconfiguring packages ...
421s Fetched 9512 kB in 10s (947 kB/s)
421s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
421s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
421s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
421s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
421s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
421s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
421s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
421s Setting up libc6:s390x (2.41-1ubuntu2) ...
421s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
421s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
421s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
421s Setting up libc-bin (2.41-1ubuntu2) ...
421s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
421s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
421s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
421s Setting up locales (2.41-1ubuntu2) ...
422s Generating locales (this might take a while)...
423s   en_US.UTF-8... done
423s Generation complete.
423s Setting up libc-dev-bin (2.41-1ubuntu2) ...
423s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
423s Processing triggers for man-db (2.13.0-1) ...
423s Processing triggers for systemd (257.3-1ubuntu3) ...
424s Reading package lists...
424s Building dependency tree...
424s Reading state information...
425s Starting pkgProblemResolver with broken count: 0
425s Starting 2 pkgProblemResolver with broken count: 0
425s Done
425s Solving dependencies...
425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
425s autopkgtest [17:52:59]: rebooting testbed after setup commands that affected boot
445s autopkgtest [17:53:19]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
448s autopkgtest [17:53:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-pwalign
450s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-pwalign 1.2.0-2 (dsc) [2182 B]
450s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-pwalign 1.2.0-2 (tar) [327 kB]
450s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-pwalign 1.2.0-2 (diff) [5492 B]
450s gpgv: Signature made Sun Jan 12 19:21:49 2025 UTC
450s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
450s gpgv:                issuer "crusoe@debian.org"
450s gpgv: Can't check signature: No public key
450s dpkg-source: warning: cannot verify inline signature for ./r-bioc-pwalign_1.2.0-2.dsc: no acceptable signature found
450s autopkgtest [17:53:24]: testing package r-bioc-pwalign version 1.2.0-2
451s autopkgtest [17:53:25]: build not needed
453s autopkgtest [17:53:27]: test pkg-r-autopkgtest: preparing testbed
453s Reading package lists...
453s Building dependency tree...
453s Reading state information...
453s Starting pkgProblemResolver with broken count: 0
453s Starting 2 pkgProblemResolver with broken count: 0
453s Done
454s The following NEW packages will be installed:
454s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
454s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
454s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
454s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
454s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
454s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
454s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
454s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
454s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
454s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
454s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
454s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
454s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
454s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
454s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
454s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
454s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biostrings
454s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-pwalign
454s   r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc
454s   r-cran-askpass r-cran-crayon r-cran-curl r-cran-httr r-cran-jsonlite
454s   r-cran-mime r-cran-openssl r-cran-r6 r-cran-runit r-cran-sys unzip
454s   x11-common xdg-utils zip zlib1g-dev
454s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded.
454s Need to get 161 MB of archives.
454s After this operation, 406 MB of additional disk space will be used.
454s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
455s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
455s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
465s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
465s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
465s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
465s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
465s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
465s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
465s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
469s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
470s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
471s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
492s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
493s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
493s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
493s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
495s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
508s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
508s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
508s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
508s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
508s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
508s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
509s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
509s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
510s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
510s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
510s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
511s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
511s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
512s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
524s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
524s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
524s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
524s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
524s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
525s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
525s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
525s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
525s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
525s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
525s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
525s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
526s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
526s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
526s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
526s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
526s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
527s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
527s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
527s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
540s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
540s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
540s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
540s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
540s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
540s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
543s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
548s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
549s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
549s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
549s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
549s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
549s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
549s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
549s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
549s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
549s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
550s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
550s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
550s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
551s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
551s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
552s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
552s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
552s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
552s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
553s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
553s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
553s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
553s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
553s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
553s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
554s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
554s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
554s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
554s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
554s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
580s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
580s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
580s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
580s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
580s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
580s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
580s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
581s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
583s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
585s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
585s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
585s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
586s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
586s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
586s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
586s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
586s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
587s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
587s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
587s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
587s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
600s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
604s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
604s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
616s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-pwalign s390x 1.2.0-2 [750 kB]
616s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB]
617s Preconfiguring packages ...
617s Fetched 161 MB in 2min 43s (988 kB/s)
617s Selecting previously unselected package libisl23:s390x.
617s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
617s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
617s Unpacking libisl23:s390x (0.27-1) ...
617s Selecting previously unselected package libmpc3:s390x.
617s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
617s Unpacking libmpc3:s390x (1.3.1-1build2) ...
617s Selecting previously unselected package cpp-14-s390x-linux-gnu.
617s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package cpp-14.
617s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package cpp-s390x-linux-gnu.
617s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
617s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
617s Selecting previously unselected package cpp.
617s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
617s Unpacking cpp (4:14.2.0-1ubuntu1) ...
618s Selecting previously unselected package libcc1-0:s390x.
618s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
618s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
618s Selecting previously unselected package libgomp1:s390x.
618s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
618s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
618s Selecting previously unselected package libitm1:s390x.
618s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
618s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
618s Selecting previously unselected package libasan8:s390x.
618s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
618s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
618s Selecting previously unselected package libubsan1:s390x.
618s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
618s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
618s Selecting previously unselected package libgcc-14-dev:s390x.
618s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
618s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package gcc-14-s390x-linux-gnu.
618s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
618s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package gcc-14.
618s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
618s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package gcc-s390x-linux-gnu.
618s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
618s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
618s Selecting previously unselected package gcc.
618s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
618s Unpacking gcc (4:14.2.0-1ubuntu1) ...
618s Selecting previously unselected package libstdc++-14-dev:s390x.
618s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
618s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package g++-14-s390x-linux-gnu.
618s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
618s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package g++-14.
618s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
618s Unpacking g++-14 (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package g++-s390x-linux-gnu.
618s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
618s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
618s Selecting previously unselected package g++.
618s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
618s Unpacking g++ (4:14.2.0-1ubuntu1) ...
618s Selecting previously unselected package build-essential.
618s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
618s Unpacking build-essential (12.10ubuntu1) ...
618s Selecting previously unselected package dctrl-tools.
618s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
618s Unpacking dctrl-tools (2.24-3build3) ...
618s Selecting previously unselected package libfreetype6:s390x.
618s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
618s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
618s Selecting previously unselected package fonts-dejavu-mono.
618s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
618s Unpacking fonts-dejavu-mono (2.37-8) ...
618s Selecting previously unselected package fonts-dejavu-core.
618s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
618s Unpacking fonts-dejavu-core (2.37-8) ...
618s Selecting previously unselected package fontconfig-config.
618s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
618s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
618s Selecting previously unselected package libfontconfig1:s390x.
618s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
618s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
618s Selecting previously unselected package fontconfig.
618s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
618s Unpacking fontconfig (2.15.0-2ubuntu1) ...
619s Selecting previously unselected package libgfortran5:s390x.
619s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
619s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
619s Selecting previously unselected package libgfortran-14-dev:s390x.
619s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
619s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
619s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
619s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
619s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
619s Selecting previously unselected package gfortran-14.
619s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
619s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
619s Selecting previously unselected package gfortran-s390x-linux-gnu.
619s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
619s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
619s Selecting previously unselected package gfortran.
619s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
619s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
619s Selecting previously unselected package icu-devtools.
619s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
619s Unpacking icu-devtools (76.1-1ubuntu2) ...
619s Selecting previously unselected package libblas3:s390x.
619s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
619s Unpacking libblas3:s390x (3.12.1-2) ...
619s Selecting previously unselected package libblas-dev:s390x.
619s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
619s Unpacking libblas-dev:s390x (3.12.1-2) ...
619s Selecting previously unselected package libbz2-dev:s390x.
619s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
619s Unpacking libbz2-dev:s390x (1.0.8-6) ...
619s Selecting previously unselected package libpixman-1-0:s390x.
619s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
619s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
619s Selecting previously unselected package libxcb-render0:s390x.
619s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
619s Unpacking libxcb-render0:s390x (1.17.0-2) ...
619s Selecting previously unselected package libxcb-shm0:s390x.
619s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
619s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
619s Selecting previously unselected package libxrender1:s390x.
619s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
619s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
619s Selecting previously unselected package libcairo2:s390x.
619s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
619s Unpacking libcairo2:s390x (1.18.2-2) ...
619s Selecting previously unselected package libdatrie1:s390x.
619s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
619s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
619s Selecting previously unselected package libdeflate0:s390x.
619s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
619s Unpacking libdeflate0:s390x (1.23-1) ...
619s Selecting previously unselected package libdeflate-dev:s390x.
619s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
619s Unpacking libdeflate-dev:s390x (1.23-1) ...
619s Selecting previously unselected package libgraphite2-3:s390x.
619s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
619s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
619s Selecting previously unselected package libharfbuzz0b:s390x.
619s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
619s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
619s Selecting previously unselected package x11-common.
619s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
619s Unpacking x11-common (1:7.7+23ubuntu3) ...
619s Selecting previously unselected package libice6:s390x.
619s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
619s Unpacking libice6:s390x (2:1.1.1-1) ...
619s Selecting previously unselected package libicu-dev:s390x.
619s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
619s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
619s Selecting previously unselected package libjpeg-turbo8:s390x.
619s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
619s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
619s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
619s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
619s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
619s Selecting previously unselected package libjpeg8:s390x.
619s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
619s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
619s Selecting previously unselected package libjpeg8-dev:s390x.
619s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
619s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
619s Selecting previously unselected package libjpeg-dev:s390x.
619s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
619s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
619s Selecting previously unselected package liblapack3:s390x.
619s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
619s Unpacking liblapack3:s390x (3.12.1-2) ...
619s Selecting previously unselected package liblapack-dev:s390x.
619s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ...
619s Unpacking liblapack-dev:s390x (3.12.1-2) ...
620s Selecting previously unselected package libncurses-dev:s390x.
620s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
620s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
620s Selecting previously unselected package libthai-data.
620s Preparing to unpack .../060-libthai-data_0.1.29-2build1_all.deb ...
620s Unpacking libthai-data (0.1.29-2build1) ...
620s Selecting previously unselected package libthai0:s390x.
620s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ...
620s Unpacking libthai0:s390x (0.1.29-2build1) ...
620s Selecting previously unselected package libpango-1.0-0:s390x.
620s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
620s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
620s Selecting previously unselected package libpangoft2-1.0-0:s390x.
620s Preparing to unpack .../063-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
620s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
620s Selecting previously unselected package libpangocairo-1.0-0:s390x.
620s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
620s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
620s Selecting previously unselected package libpaper2:s390x.
620s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
620s Unpacking libpaper2:s390x (2.2.5-0.3) ...
620s Selecting previously unselected package libpaper-utils.
620s Preparing to unpack .../066-libpaper-utils_2.2.5-0.3_s390x.deb ...
620s Unpacking libpaper-utils (2.2.5-0.3) ...
620s Selecting previously unselected package libpcre2-16-0:s390x.
620s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ...
620s Unpacking libpcre2-16-0:s390x (10.45-1) ...
620s Selecting previously unselected package libpcre2-32-0:s390x.
620s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ...
620s Unpacking libpcre2-32-0:s390x (10.45-1) ...
620s Selecting previously unselected package libpcre2-posix3:s390x.
620s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ...
620s Unpacking libpcre2-posix3:s390x (10.45-1) ...
620s Selecting previously unselected package libpcre2-dev:s390x.
620s Preparing to unpack .../070-libpcre2-dev_10.45-1_s390x.deb ...
620s Unpacking libpcre2-dev:s390x (10.45-1) ...
620s Selecting previously unselected package libpkgconf3:s390x.
620s Preparing to unpack .../071-libpkgconf3_1.8.1-4_s390x.deb ...
620s Unpacking libpkgconf3:s390x (1.8.1-4) ...
620s Selecting previously unselected package zlib1g-dev:s390x.
620s Preparing to unpack .../072-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
620s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
620s Selecting previously unselected package libpng-dev:s390x.
620s Preparing to unpack .../073-libpng-dev_1.6.47-1_s390x.deb ...
620s Unpacking libpng-dev:s390x (1.6.47-1) ...
620s Selecting previously unselected package libreadline-dev:s390x.
620s Preparing to unpack .../074-libreadline-dev_8.2-6_s390x.deb ...
620s Unpacking libreadline-dev:s390x (8.2-6) ...
620s Selecting previously unselected package libsharpyuv0:s390x.
620s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ...
620s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
620s Selecting previously unselected package libsm6:s390x.
620s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ...
620s Unpacking libsm6:s390x (2:1.2.4-1) ...
620s Selecting previously unselected package libtcl8.6:s390x.
620s Preparing to unpack .../077-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
620s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
620s Selecting previously unselected package libjbig0:s390x.
620s Preparing to unpack .../078-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
620s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
620s Selecting previously unselected package libwebp7:s390x.
620s Preparing to unpack .../079-libwebp7_1.5.0-0.1_s390x.deb ...
620s Unpacking libwebp7:s390x (1.5.0-0.1) ...
620s Selecting previously unselected package libtiff6:s390x.
620s Preparing to unpack .../080-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
620s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
620s Selecting previously unselected package libxft2:s390x.
620s Preparing to unpack .../081-libxft2_2.3.6-1build1_s390x.deb ...
620s Unpacking libxft2:s390x (2.3.6-1build1) ...
620s Selecting previously unselected package libxss1:s390x.
620s Preparing to unpack .../082-libxss1_1%3a1.2.3-1build3_s390x.deb ...
620s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
620s Selecting previously unselected package libtk8.6:s390x.
620s Preparing to unpack .../083-libtk8.6_8.6.16-1_s390x.deb ...
620s Unpacking libtk8.6:s390x (8.6.16-1) ...
620s Selecting previously unselected package libxt6t64:s390x.
620s Preparing to unpack .../084-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
620s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
620s Selecting previously unselected package zip.
620s Preparing to unpack .../085-zip_3.0-14ubuntu2_s390x.deb ...
620s Unpacking zip (3.0-14ubuntu2) ...
620s Selecting previously unselected package unzip.
620s Preparing to unpack .../086-unzip_6.0-28ubuntu6_s390x.deb ...
620s Unpacking unzip (6.0-28ubuntu6) ...
620s Selecting previously unselected package xdg-utils.
620s Preparing to unpack .../087-xdg-utils_1.2.1-2ubuntu1_all.deb ...
620s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
620s Selecting previously unselected package r-base-core.
620s Preparing to unpack .../088-r-base-core_4.4.3-1_s390x.deb ...
620s Unpacking r-base-core (4.4.3-1) ...
620s Selecting previously unselected package liblzma-dev:s390x.
620s Preparing to unpack .../089-liblzma-dev_5.6.4-1_s390x.deb ...
620s Unpacking liblzma-dev:s390x (5.6.4-1) ...
620s Selecting previously unselected package pkgconf-bin.
620s Preparing to unpack .../090-pkgconf-bin_1.8.1-4_s390x.deb ...
620s Unpacking pkgconf-bin (1.8.1-4) ...
620s Selecting previously unselected package pkgconf:s390x.
620s Preparing to unpack .../091-pkgconf_1.8.1-4_s390x.deb ...
620s Unpacking pkgconf:s390x (1.8.1-4) ...
620s Selecting previously unselected package libtirpc-dev:s390x.
620s Preparing to unpack .../092-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
620s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
620s Selecting previously unselected package r-base-dev.
620s Preparing to unpack .../093-r-base-dev_4.4.3-1_all.deb ...
620s Unpacking r-base-dev (4.4.3-1) ...
620s Selecting previously unselected package pkg-r-autopkgtest.
620s Preparing to unpack .../094-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
620s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
620s Selecting previously unselected package r-bioc-biocgenerics.
620s Preparing to unpack .../095-r-bioc-biocgenerics_0.52.0-2_all.deb ...
620s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
620s Selecting previously unselected package r-bioc-s4vectors.
620s Preparing to unpack .../096-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ...
620s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
620s Selecting previously unselected package r-bioc-iranges.
620s Preparing to unpack .../097-r-bioc-iranges_2.40.1-2_s390x.deb ...
620s Unpacking r-bioc-iranges (2.40.1-2) ...
620s Selecting previously unselected package r-bioc-zlibbioc.
620s Preparing to unpack .../098-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
620s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
620s Selecting previously unselected package r-bioc-xvector.
620s Preparing to unpack .../099-r-bioc-xvector_0.46.0-2_s390x.deb ...
620s Unpacking r-bioc-xvector (0.46.0-2) ...
620s Selecting previously unselected package r-cran-curl.
620s Preparing to unpack .../100-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ...
620s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
620s Selecting previously unselected package r-cran-jsonlite.
620s Preparing to unpack .../101-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
620s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
620s Selecting previously unselected package r-cran-mime.
620s Preparing to unpack .../102-r-cran-mime_0.12-2_s390x.deb ...
620s Unpacking r-cran-mime (0.12-2) ...
620s Selecting previously unselected package r-cran-sys.
620s Preparing to unpack .../103-r-cran-sys_3.4.3-1_s390x.deb ...
620s Unpacking r-cran-sys (3.4.3-1) ...
620s Selecting previously unselected package r-cran-askpass.
620s Preparing to unpack .../104-r-cran-askpass_1.2.1-1_s390x.deb ...
620s Unpacking r-cran-askpass (1.2.1-1) ...
620s Selecting previously unselected package r-cran-openssl.
620s Preparing to unpack .../105-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ...
620s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
621s Selecting previously unselected package r-cran-r6.
621s Preparing to unpack .../106-r-cran-r6_2.6.1-1_all.deb ...
621s Unpacking r-cran-r6 (2.6.1-1) ...
621s Selecting previously unselected package r-cran-httr.
621s Preparing to unpack .../107-r-cran-httr_1.4.7+dfsg-1_all.deb ...
621s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
621s Selecting previously unselected package r-bioc-ucsc.utils.
621s Preparing to unpack .../108-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
621s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
621s Selecting previously unselected package r-bioc-genomeinfodbdata.
621s Preparing to unpack .../109-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
621s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
621s Selecting previously unselected package r-bioc-genomeinfodb.
621s Preparing to unpack .../110-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
621s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
621s Selecting previously unselected package r-cran-crayon.
621s Preparing to unpack .../111-r-cran-crayon_1.5.3-1_all.deb ...
621s Unpacking r-cran-crayon (1.5.3-1) ...
621s Selecting previously unselected package r-bioc-biostrings.
621s Preparing to unpack .../112-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ...
621s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
621s Selecting previously unselected package r-bioc-pwalign.
621s Preparing to unpack .../113-r-bioc-pwalign_1.2.0-2_s390x.deb ...
621s Unpacking r-bioc-pwalign (1.2.0-2) ...
621s Selecting previously unselected package r-cran-runit.
621s Preparing to unpack .../114-r-cran-runit_0.4.33-1_all.deb ...
621s Unpacking r-cran-runit (0.4.33-1) ...
621s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
621s Setting up libpixman-1-0:s390x (0.44.0-3) ...
621s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
621s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
621s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
621s Setting up libdatrie1:s390x (0.2.13-3build1) ...
621s Setting up libxcb-render0:s390x (1.17.0-2) ...
621s Setting up unzip (6.0-28ubuntu6) ...
621s Setting up x11-common (1:7.7+23ubuntu3) ...
621s Setting up libdeflate0:s390x (1.23-1) ...
621s Setting up libxcb-shm0:s390x (1.17.0-2) ...
621s Setting up libreadline-dev:s390x (8.2-6) ...
621s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
621s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
621s Setting up libpcre2-16-0:s390x (10.45-1) ...
621s Setting up zip (3.0-14ubuntu2) ...
621s Setting up libpcre2-32-0:s390x (10.45-1) ...
621s Setting up libblas3:s390x (3.12.1-2) ...
621s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
621s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
621s Setting up libpkgconf3:s390x (1.8.1-4) ...
621s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
621s Setting up fonts-dejavu-mono (2.37-8) ...
621s Setting up libmpc3:s390x (1.3.1-1build2) ...
621s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
621s Setting up icu-devtools (76.1-1ubuntu2) ...
621s Setting up fonts-dejavu-core (2.37-8) ...
621s Setting up pkgconf-bin (1.8.1-4) ...
621s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
621s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
621s Setting up libwebp7:s390x (1.5.0-0.1) ...
621s Setting up liblzma-dev:s390x (5.6.4-1) ...
621s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
621s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
621s Setting up libpcre2-posix3:s390x (10.45-1) ...
621s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
621s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
621s Setting up libthai-data (0.1.29-2build1) ...
621s Setting up libxss1:s390x (1:1.2.3-1build3) ...
621s Setting up libpaper2:s390x (2.2.5-0.3) ...
621s Setting up libisl23:s390x (0.27-1) ...
621s Setting up libdeflate-dev:s390x (1.23-1) ...
621s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
621s Setting up xdg-utils (1.2.1-2ubuntu1) ...
621s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
621s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
621s Setting up libblas-dev:s390x (3.12.1-2) ...
621s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
621s Setting up dctrl-tools (2.24-3build3) ...
621s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
621s Setting up libbz2-dev:s390x (1.0.8-6) ...
621s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
621s Setting up libice6:s390x (2:1.1.1-1) ...
621s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
621s Setting up liblapack3:s390x (3.12.1-2) ...
621s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
621s Setting up libpcre2-dev:s390x (10.45-1) ...
621s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
621s Setting up libpng-dev:s390x (1.6.47-1) ...
621s Setting up libpaper-utils (2.2.5-0.3) ...
621s Setting up pkgconf:s390x (1.8.1-4) ...
621s Setting up libthai0:s390x (0.1.29-2build1) ...
621s Setting up liblapack-dev:s390x (3.12.1-2) ...
621s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
621s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
621s Setting up cpp-14 (14.2.0-17ubuntu3) ...
621s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
621s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
621s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
621s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
621s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
621s Setting up libsm6:s390x (2:1.2.4-1) ...
621s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
621s Setting up fontconfig (2.15.0-2ubuntu1) ...
623s Regenerating fonts cache... done.
623s Setting up libxft2:s390x (2.3.6-1build1) ...
623s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
623s Setting up libtk8.6:s390x (8.6.16-1) ...
623s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
623s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
623s Setting up libcairo2:s390x (1.18.2-2) ...
623s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
623s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
623s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
623s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
623s Setting up cpp (4:14.2.0-1ubuntu1) ...
623s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
623s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
623s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
623s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
623s Setting up gcc-14 (14.2.0-17ubuntu3) ...
623s Setting up r-base-core (4.4.3-1) ...
624s Creating config file /etc/R/Renviron with new version
624s Setting up r-cran-crayon (1.5.3-1) ...
624s Setting up g++-14 (14.2.0-17ubuntu3) ...
624s Setting up r-cran-r6 (2.6.1-1) ...
624s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
624s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
624s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
624s Setting up r-bioc-biocgenerics (0.52.0-2) ...
624s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
624s Setting up r-cran-sys (3.4.3-1) ...
624s Setting up r-cran-mime (0.12-2) ...
624s Setting up gcc (4:14.2.0-1ubuntu1) ...
624s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
624s Setting up r-cran-askpass (1.2.1-1) ...
624s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
624s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
624s Setting up r-cran-runit (0.4.33-1) ...
624s Setting up g++ (4:14.2.0-1ubuntu1) ...
624s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
624s Setting up build-essential (12.10ubuntu1) ...
624s Setting up r-bioc-iranges (2.40.1-2) ...
624s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
624s Setting up gfortran (4:14.2.0-1ubuntu1) ...
624s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
624s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
624s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
624s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
624s Setting up r-cran-httr (1.4.7+dfsg-1) ...
624s Setting up r-bioc-xvector (0.46.0-2) ...
624s Setting up r-base-dev (4.4.3-1) ...
624s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
624s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
624s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
624s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
624s Setting up r-bioc-pwalign (1.2.0-2) ...
624s Processing triggers for man-db (2.13.0-1) ...
625s Processing triggers for install-info (7.1.1-1) ...
625s Processing triggers for libc-bin (2.41-1ubuntu2) ...
627s autopkgtest [17:56:21]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
627s autopkgtest [17:56:21]: test pkg-r-autopkgtest: [-----------------------
627s Test: Try to load the R library pwalign
627s 
627s R version 4.4.3 (2025-02-28) -- "Trophy Case"
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627s Platform: s390x-ibm-linux-gnu
627s 
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627s Type 'demo()' for some demos, 'help()' for on-line help, or
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627s 
627s > library('pwalign')
627s Loading required package: BiocGenerics
627s 
627s Attaching package: ‘BiocGenerics’
627s 
627s The following objects are masked from ‘package:stats’:
627s 
627s     IQR, mad, sd, var, xtabs
627s 
627s The following objects are masked from ‘package:base’:
627s 
627s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
627s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
627s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
627s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
627s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
627s     table, tapply, union, unique, unsplit, which.max, which.min
627s 
627s Loading required package: S4Vectors
627s Loading required package: stats4
628s 
628s Attaching package: ‘S4Vectors’
628s 
628s The following object is masked from ‘package:utils’:
628s 
628s     findMatches
628s 
628s The following objects are masked from ‘package:base’:
628s 
628s     expand.grid, I, unname
628s 
628s Loading required package: IRanges
628s Loading required package: Biostrings
628s Loading required package: XVector
628s Loading required package: GenomeInfoDb
629s 
629s Attaching package: ‘Biostrings’
629s 
629s The following object is masked from ‘package:base’:
629s 
629s     strsplit
629s 
630s > 
630s > 
630s 
630s Attaching package: ‘pwalign’
630s 
630s The following objects are masked from ‘package:Biostrings’:
630s 
630s     aligned, alignedPattern, alignedSubject, compareStrings, deletion,
630s     errorSubstitutionMatrices, indel, insertion, mismatchSummary,
630s     mismatchTable, nedit, nindel, nucleotideSubstitutionMatrix,
630s     pairwiseAlignment, PairwiseAlignments,
630s     PairwiseAlignmentsSingleSubject, pid, qualitySubstitutionMatrices,
630s     stringDist, unaligned, writePairwiseAlignments
630s 
630s Other tests are currently unsupported!
630s They will be progressively added.
630s autopkgtest [17:56:24]: test pkg-r-autopkgtest: -----------------------]
630s pkg-r-autopkgtest    PASS
630s autopkgtest [17:56:24]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
631s autopkgtest [17:56:25]: @@@@@@@@@@@@@@@@@@@@ summary
631s pkg-r-autopkgtest    PASS
649s nova [W] Using flock in prodstack6-s390x
649s Creating nova instance adt-plucky-s390x-r-bioc-pwalign-20250315-174554-juju-7f2275-prod-proposed-migration-environment-2-84c9102c-842f-4349-8af2-6755603d6757 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
649s nova [W] nova quota exceeded (attempt #0)
649s nova [W] Timed out waiting for 02a18133-ee09-4bb0-9e35-6c59531b3fcc to get deleted.