0s autopkgtest [17:45:48]: starting date and time: 2025-03-15 17:45:48+0000
  0s autopkgtest [17:45:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:45:48]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jc3q_j1n/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-pcamethods --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-21.secgroup --name adt-plucky-s390x-r-bioc-pcamethods-20250315-174548-juju-7f2275-prod-proposed-migration-environment-20-6d7f9001-5695-44ea-b883-9ccf8d07c517 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
1033s autopkgtest [18:03:01]: testbed dpkg architecture: s390x
1033s autopkgtest [18:03:01]: testbed apt version: 2.9.33
1034s autopkgtest [18:03:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1034s autopkgtest [18:03:02]: testbed release detected to be: None
1035s autopkgtest [18:03:03]: updating testbed package index (apt update)
1035s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
1035s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
1035s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
1035s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
1035s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
1036s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
1036s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
1036s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
1036s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
1036s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
1036s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
1036s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
1036s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
1036s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
1036s Fetched 1073 kB in 1s (849 kB/s)
1037s Reading package lists...
1037s Reading package lists...
1038s Building dependency tree...
1038s Reading state information...
1038s Calculating upgrade...
1038s Calculating upgrade...
1038s The following packages were automatically installed and are no longer required:
1038s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
1038s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
1038s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
1038s   linux-tools-6.11.0-8-generic
1038s Use 'sudo apt autoremove' to remove them.
1038s The following packages will be upgraded:
1038s   pinentry-curses python3-jinja2 strace
1038s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1038s Need to get 652 kB of archives.
1038s After this operation, 27.6 kB of additional disk space will be used.
1038s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
1039s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
1039s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
1039s Fetched 652 kB in 1s (733 kB/s)
1039s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
1039s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
1039s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
1039s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
1039s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
1039s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
1039s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
1039s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
1039s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
1039s Setting up strace (6.13+ds-1ubuntu1) ...
1039s Processing triggers for man-db (2.13.0-1) ...
1040s Reading package lists...
1040s Building dependency tree...
1040s Reading state information...
1040s Solving dependencies...
1041s The following packages will be REMOVED:
1041s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
1041s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
1041s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
1041s   linux-tools-6.11.0-8-generic*
1041s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
1041s After this operation, 167 MB disk space will be freed.
1041s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
1041s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
1041s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
1041s Removing libpython3.12t64:s390x (3.12.9-1) ...
1041s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
1041s Removing libnsl2:s390x (1.3.0-3build3) ...
1041s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
1041s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
1041s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
1042s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
1042s Processing triggers for libc-bin (2.41-1ubuntu1) ...
1042s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
1042s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
1042s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
1042s autopkgtest [18:03:10]: upgrading testbed (apt dist-upgrade and autopurge)
1042s Reading package lists...
1042s Building dependency tree...
1042s Reading state information...
1043s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
1043s Starting 2 pkgProblemResolver with broken count: 0
1043s Done
1043s Entering ResolveByKeep
1043s 
1043s Calculating upgrade...
1043s The following packages will be upgraded:
1043s   libc-bin libc-dev-bin libc6 libc6-dev locales
1043s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1043s Need to get 9512 kB of archives.
1043s After this operation, 8192 B of additional disk space will be used.
1043s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
1045s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
1046s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
1048s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
1049s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
1053s Preconfiguring packages ...
1053s Fetched 9512 kB in 10s (986 kB/s)
1053s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
1053s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
1053s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1053s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
1053s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1053s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
1053s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1053s Setting up libc6:s390x (2.41-1ubuntu2) ...
1053s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
1053s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
1053s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1054s Setting up libc-bin (2.41-1ubuntu2) ...
1054s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
1054s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
1054s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1054s Setting up locales (2.41-1ubuntu2) ...
1054s Generating locales (this might take a while)...
1055s   en_US.UTF-8... done
1055s Generation complete.
1055s Setting up libc-dev-bin (2.41-1ubuntu2) ...
1055s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
1055s Processing triggers for man-db (2.13.0-1) ...
1056s Processing triggers for systemd (257.3-1ubuntu3) ...
1057s Reading package lists...
1057s Building dependency tree...
1057s Reading state information...
1057s Starting pkgProblemResolver with broken count: 0
1057s Starting 2 pkgProblemResolver with broken count: 0
1057s Done
1057s Solving dependencies...
1057s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1057s autopkgtest [18:03:25]: rebooting testbed after setup commands that affected boot
1077s autopkgtest [18:03:45]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
1079s autopkgtest [18:03:47]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-pcamethods
1081s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-pcamethods 1.98.0-2 (dsc) [2185 B]
1081s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-pcamethods 1.98.0-2 (tar) [1047 kB]
1081s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-pcamethods 1.98.0-2 (diff) [3304 B]
1082s gpgv: Signature made Sun Jan 12 02:50:35 2025 UTC
1082s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
1082s gpgv:                issuer "crusoe@debian.org"
1082s gpgv: Can't check signature: No public key
1082s dpkg-source: warning: cannot verify inline signature for ./r-bioc-pcamethods_1.98.0-2.dsc: no acceptable signature found
1082s autopkgtest [18:03:50]: testing package r-bioc-pcamethods version 1.98.0-2
1082s autopkgtest [18:03:50]: build not needed
1085s autopkgtest [18:03:53]: test pkg-r-autopkgtest: preparing testbed
1085s Reading package lists...
1085s Building dependency tree...
1085s Reading state information...
1085s Starting pkgProblemResolver with broken count: 0
1085s Starting 2 pkgProblemResolver with broken count: 0
1085s Done
1086s The following NEW packages will be installed:
1086s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
1086s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
1086s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
1086s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
1086s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
1086s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
1086s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
1086s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
1086s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
1086s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
1086s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
1086s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
1086s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
1086s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
1086s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
1086s   libxft2 libxrender1 libxss1 libxt6t64 littler pkg-r-autopkgtest pkgconf
1086s   pkgconf-bin r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
1086s   r-bioc-pcamethods r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver
1086s   r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-isoband r-cran-labeling
1086s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
1086s   r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme
1086s   r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-r6
1086s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-scales r-cran-tibble
1086s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr unzip x11-common
1086s   xdg-utils zip zlib1g-dev
1086s 0 upgraded, 131 newly installed, 0 to remove and 0 not upgraded.
1086s Need to get 160 MB of archives.
1086s After this operation, 426 MB of additional disk space will be used.
1086s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
1087s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
1087s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
1096s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
1096s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
1096s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
1096s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
1096s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
1096s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
1096s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
1099s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
1101s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
1101s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
1120s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
1121s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
1121s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
1121s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
1123s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
1132s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
1132s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
1132s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
1132s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
1132s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
1132s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
1132s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
1133s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
1133s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
1133s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
1134s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
1134s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
1134s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
1135s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
1143s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
1143s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
1143s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
1143s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
1144s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
1144s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
1144s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
1144s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
1144s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
1144s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
1144s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
1144s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
1145s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
1145s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
1145s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
1145s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
1145s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
1146s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
1146s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
1146s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
1158s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
1158s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
1158s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
1158s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
1158s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
1158s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
1161s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
1167s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
1168s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
1168s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
1168s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
1168s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
1168s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
1168s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
1168s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
1168s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
1169s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
1169s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
1169s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
1170s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
1170s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
1170s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
1171s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
1171s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
1171s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
1171s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
1172s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
1172s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
1172s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
1172s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
1172s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
1172s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
1173s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
1173s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
1174s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
1174s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
1174s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
1202s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
1202s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
1202s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
1202s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
1202s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
1202s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
1203s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
1203s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
1203s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
1203s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
1205s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
1205s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
1207s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
1208s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-pcamethods s390x 1.98.0-2 [1386 kB]
1210s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
1211s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-colorspace s390x 2.1-1+dfsg-1 [1567 kB]
1212s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
1213s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-farver s390x 2.1.2-1 [1353 kB]
1214s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
1214s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
1216s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
1216s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
1216s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB]
1217s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
1219s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB]
1221s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
1227s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB]
1230s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB]
1230s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-munsell all 0.5.1-1 [213 kB]
1230s Get:119 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
1231s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
1231s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB]
1232s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-scales all 1.3.0-1 [603 kB]
1232s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
1233s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
1233s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
1235s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
1235s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
1236s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB]
1236s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
1237s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
1241s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
1241s Preconfiguring packages ...
1242s Fetched 160 MB in 2min 35s (1027 kB/s)
1242s Selecting previously unselected package libisl23:s390x.
1242s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
1242s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
1242s Unpacking libisl23:s390x (0.27-1) ...
1242s Selecting previously unselected package libmpc3:s390x.
1242s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
1242s Unpacking libmpc3:s390x (1.3.1-1build2) ...
1242s Selecting previously unselected package cpp-14-s390x-linux-gnu.
1242s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
1242s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1242s Selecting previously unselected package cpp-14.
1242s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
1242s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
1242s Selecting previously unselected package cpp-s390x-linux-gnu.
1242s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
1242s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1242s Selecting previously unselected package cpp.
1242s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
1242s Unpacking cpp (4:14.2.0-1ubuntu1) ...
1242s Selecting previously unselected package libcc1-0:s390x.
1242s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
1242s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
1242s Selecting previously unselected package libgomp1:s390x.
1242s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
1242s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
1242s Selecting previously unselected package libitm1:s390x.
1242s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
1242s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
1242s Selecting previously unselected package libasan8:s390x.
1242s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
1242s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
1242s Selecting previously unselected package libubsan1:s390x.
1242s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
1242s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
1242s Selecting previously unselected package libgcc-14-dev:s390x.
1242s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
1242s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
1242s Selecting previously unselected package gcc-14-s390x-linux-gnu.
1242s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
1242s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1242s Selecting previously unselected package gcc-14.
1242s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
1242s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
1242s Selecting previously unselected package gcc-s390x-linux-gnu.
1242s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
1242s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1242s Selecting previously unselected package gcc.
1242s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
1242s Unpacking gcc (4:14.2.0-1ubuntu1) ...
1242s Selecting previously unselected package libstdc++-14-dev:s390x.
1242s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
1242s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
1242s Selecting previously unselected package g++-14-s390x-linux-gnu.
1242s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
1242s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1243s Selecting previously unselected package g++-14.
1243s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
1243s Unpacking g++-14 (14.2.0-17ubuntu3) ...
1243s Selecting previously unselected package g++-s390x-linux-gnu.
1243s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
1243s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1243s Selecting previously unselected package g++.
1243s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
1243s Unpacking g++ (4:14.2.0-1ubuntu1) ...
1243s Selecting previously unselected package build-essential.
1243s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
1243s Unpacking build-essential (12.10ubuntu1) ...
1243s Selecting previously unselected package dctrl-tools.
1243s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
1243s Unpacking dctrl-tools (2.24-3build3) ...
1243s Selecting previously unselected package libfreetype6:s390x.
1243s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
1243s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
1243s Selecting previously unselected package fonts-dejavu-mono.
1243s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
1243s Unpacking fonts-dejavu-mono (2.37-8) ...
1243s Selecting previously unselected package fonts-dejavu-core.
1243s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
1243s Unpacking fonts-dejavu-core (2.37-8) ...
1243s Selecting previously unselected package fontconfig-config.
1243s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
1243s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
1243s Selecting previously unselected package libfontconfig1:s390x.
1243s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
1243s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
1243s Selecting previously unselected package fontconfig.
1243s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
1243s Unpacking fontconfig (2.15.0-2ubuntu1) ...
1243s Selecting previously unselected package libgfortran5:s390x.
1243s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
1243s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
1243s Selecting previously unselected package libgfortran-14-dev:s390x.
1243s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
1243s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
1243s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
1243s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
1243s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1243s Selecting previously unselected package gfortran-14.
1243s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
1243s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
1243s Selecting previously unselected package gfortran-s390x-linux-gnu.
1243s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
1243s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1243s Selecting previously unselected package gfortran.
1243s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
1243s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
1243s Selecting previously unselected package icu-devtools.
1243s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
1243s Unpacking icu-devtools (76.1-1ubuntu2) ...
1243s Selecting previously unselected package libblas3:s390x.
1243s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
1243s Unpacking libblas3:s390x (3.12.1-2) ...
1243s Selecting previously unselected package libblas-dev:s390x.
1243s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
1243s Unpacking libblas-dev:s390x (3.12.1-2) ...
1243s Selecting previously unselected package libbz2-dev:s390x.
1243s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
1243s Unpacking libbz2-dev:s390x (1.0.8-6) ...
1243s Selecting previously unselected package libpixman-1-0:s390x.
1243s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
1243s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
1243s Selecting previously unselected package libxcb-render0:s390x.
1243s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
1243s Unpacking libxcb-render0:s390x (1.17.0-2) ...
1243s Selecting previously unselected package libxcb-shm0:s390x.
1243s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
1243s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
1243s Selecting previously unselected package libxrender1:s390x.
1243s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
1243s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
1243s Selecting previously unselected package libcairo2:s390x.
1243s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
1243s Unpacking libcairo2:s390x (1.18.2-2) ...
1243s Selecting previously unselected package libdatrie1:s390x.
1243s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
1243s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
1243s Selecting previously unselected package libdeflate0:s390x.
1243s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
1243s Unpacking libdeflate0:s390x (1.23-1) ...
1243s Selecting previously unselected package libdeflate-dev:s390x.
1243s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
1243s Unpacking libdeflate-dev:s390x (1.23-1) ...
1243s Selecting previously unselected package libgraphite2-3:s390x.
1243s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
1243s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
1243s Selecting previously unselected package libharfbuzz0b:s390x.
1243s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
1243s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
1243s Selecting previously unselected package x11-common.
1243s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
1243s Unpacking x11-common (1:7.7+23ubuntu3) ...
1243s Selecting previously unselected package libice6:s390x.
1243s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
1243s Unpacking libice6:s390x (2:1.1.1-1) ...
1243s Selecting previously unselected package libicu-dev:s390x.
1243s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
1243s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
1244s Selecting previously unselected package libjpeg-turbo8:s390x.
1244s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
1244s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
1244s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
1244s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
1244s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
1244s Selecting previously unselected package libjpeg8:s390x.
1244s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
1244s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
1244s Selecting previously unselected package libjpeg8-dev:s390x.
1244s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
1244s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
1244s Selecting previously unselected package libjpeg-dev:s390x.
1244s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
1244s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
1244s Selecting previously unselected package liblapack3:s390x.
1244s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
1244s Unpacking liblapack3:s390x (3.12.1-2) ...
1244s Selecting previously unselected package liblapack-dev:s390x.
1244s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ...
1244s Unpacking liblapack-dev:s390x (3.12.1-2) ...
1244s Selecting previously unselected package libncurses-dev:s390x.
1244s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
1244s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
1244s Selecting previously unselected package libthai-data.
1244s Preparing to unpack .../060-libthai-data_0.1.29-2build1_all.deb ...
1244s Unpacking libthai-data (0.1.29-2build1) ...
1244s Selecting previously unselected package libthai0:s390x.
1244s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ...
1244s Unpacking libthai0:s390x (0.1.29-2build1) ...
1244s Selecting previously unselected package libpango-1.0-0:s390x.
1244s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
1244s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
1244s Selecting previously unselected package libpangoft2-1.0-0:s390x.
1244s Preparing to unpack .../063-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
1244s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
1244s Selecting previously unselected package libpangocairo-1.0-0:s390x.
1244s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
1244s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
1244s Selecting previously unselected package libpaper2:s390x.
1244s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
1244s Unpacking libpaper2:s390x (2.2.5-0.3) ...
1244s Selecting previously unselected package libpaper-utils.
1244s Preparing to unpack .../066-libpaper-utils_2.2.5-0.3_s390x.deb ...
1244s Unpacking libpaper-utils (2.2.5-0.3) ...
1244s Selecting previously unselected package libpcre2-16-0:s390x.
1244s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ...
1244s Unpacking libpcre2-16-0:s390x (10.45-1) ...
1244s Selecting previously unselected package libpcre2-32-0:s390x.
1244s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ...
1244s Unpacking libpcre2-32-0:s390x (10.45-1) ...
1244s Selecting previously unselected package libpcre2-posix3:s390x.
1244s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ...
1244s Unpacking libpcre2-posix3:s390x (10.45-1) ...
1244s Selecting previously unselected package libpcre2-dev:s390x.
1244s Preparing to unpack .../070-libpcre2-dev_10.45-1_s390x.deb ...
1244s Unpacking libpcre2-dev:s390x (10.45-1) ...
1244s Selecting previously unselected package libpkgconf3:s390x.
1244s Preparing to unpack .../071-libpkgconf3_1.8.1-4_s390x.deb ...
1244s Unpacking libpkgconf3:s390x (1.8.1-4) ...
1244s Selecting previously unselected package zlib1g-dev:s390x.
1244s Preparing to unpack .../072-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
1244s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1244s Selecting previously unselected package libpng-dev:s390x.
1244s Preparing to unpack .../073-libpng-dev_1.6.47-1_s390x.deb ...
1244s Unpacking libpng-dev:s390x (1.6.47-1) ...
1244s Selecting previously unselected package libreadline-dev:s390x.
1244s Preparing to unpack .../074-libreadline-dev_8.2-6_s390x.deb ...
1244s Unpacking libreadline-dev:s390x (8.2-6) ...
1244s Selecting previously unselected package libsharpyuv0:s390x.
1244s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ...
1244s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
1244s Selecting previously unselected package libsm6:s390x.
1244s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ...
1244s Unpacking libsm6:s390x (2:1.2.4-1) ...
1244s Selecting previously unselected package libtcl8.6:s390x.
1244s Preparing to unpack .../077-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
1244s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
1244s Selecting previously unselected package libjbig0:s390x.
1244s Preparing to unpack .../078-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
1244s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
1244s Selecting previously unselected package libwebp7:s390x.
1244s Preparing to unpack .../079-libwebp7_1.5.0-0.1_s390x.deb ...
1244s Unpacking libwebp7:s390x (1.5.0-0.1) ...
1244s Selecting previously unselected package libtiff6:s390x.
1244s Preparing to unpack .../080-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
1244s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
1244s Selecting previously unselected package libxft2:s390x.
1244s Preparing to unpack .../081-libxft2_2.3.6-1build1_s390x.deb ...
1244s Unpacking libxft2:s390x (2.3.6-1build1) ...
1244s Selecting previously unselected package libxss1:s390x.
1244s Preparing to unpack .../082-libxss1_1%3a1.2.3-1build3_s390x.deb ...
1244s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
1244s Selecting previously unselected package libtk8.6:s390x.
1244s Preparing to unpack .../083-libtk8.6_8.6.16-1_s390x.deb ...
1244s Unpacking libtk8.6:s390x (8.6.16-1) ...
1244s Selecting previously unselected package libxt6t64:s390x.
1244s Preparing to unpack .../084-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
1244s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
1244s Selecting previously unselected package zip.
1244s Preparing to unpack .../085-zip_3.0-14ubuntu2_s390x.deb ...
1244s Unpacking zip (3.0-14ubuntu2) ...
1244s Selecting previously unselected package unzip.
1244s Preparing to unpack .../086-unzip_6.0-28ubuntu6_s390x.deb ...
1244s Unpacking unzip (6.0-28ubuntu6) ...
1244s Selecting previously unselected package xdg-utils.
1244s Preparing to unpack .../087-xdg-utils_1.2.1-2ubuntu1_all.deb ...
1244s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
1244s Selecting previously unselected package r-base-core.
1244s Preparing to unpack .../088-r-base-core_4.4.3-1_s390x.deb ...
1244s Unpacking r-base-core (4.4.3-1) ...
1244s Selecting previously unselected package r-cran-littler.
1244s Preparing to unpack .../089-r-cran-littler_0.3.20-2_s390x.deb ...
1244s Unpacking r-cran-littler (0.3.20-2) ...
1244s Selecting previously unselected package littler.
1245s Preparing to unpack .../090-littler_0.3.20-2_all.deb ...
1245s Unpacking littler (0.3.20-2) ...
1245s Selecting previously unselected package liblzma-dev:s390x.
1245s Preparing to unpack .../091-liblzma-dev_5.6.4-1_s390x.deb ...
1245s Unpacking liblzma-dev:s390x (5.6.4-1) ...
1245s Selecting previously unselected package pkgconf-bin.
1245s Preparing to unpack .../092-pkgconf-bin_1.8.1-4_s390x.deb ...
1245s Unpacking pkgconf-bin (1.8.1-4) ...
1245s Selecting previously unselected package pkgconf:s390x.
1245s Preparing to unpack .../093-pkgconf_1.8.1-4_s390x.deb ...
1245s Unpacking pkgconf:s390x (1.8.1-4) ...
1245s Selecting previously unselected package libtirpc-dev:s390x.
1245s Preparing to unpack .../094-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
1245s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
1245s Selecting previously unselected package r-base-dev.
1245s Preparing to unpack .../095-r-base-dev_4.4.3-1_all.deb ...
1245s Unpacking r-base-dev (4.4.3-1) ...
1245s Selecting previously unselected package pkg-r-autopkgtest.
1245s Preparing to unpack .../096-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
1245s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
1245s Selecting previously unselected package r-bioc-biocgenerics.
1245s Preparing to unpack .../097-r-bioc-biocgenerics_0.52.0-2_all.deb ...
1245s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
1245s Selecting previously unselected package r-bioc-biobase.
1245s Preparing to unpack .../098-r-bioc-biobase_2.66.0-2_s390x.deb ...
1245s Unpacking r-bioc-biobase (2.66.0-2) ...
1245s Selecting previously unselected package r-cran-pkgkitten.
1245s Preparing to unpack .../099-r-cran-pkgkitten_0.2.4-1_all.deb ...
1245s Unpacking r-cran-pkgkitten (0.2.4-1) ...
1245s Selecting previously unselected package r-cran-rcpp.
1245s Preparing to unpack .../100-r-cran-rcpp_1.0.14-1_s390x.deb ...
1245s Unpacking r-cran-rcpp (1.0.14-1) ...
1245s Selecting previously unselected package r-cran-mass.
1245s Preparing to unpack .../101-r-cran-mass_7.3-64-1_s390x.deb ...
1245s Unpacking r-cran-mass (7.3-64-1) ...
1245s Selecting previously unselected package r-bioc-pcamethods.
1245s Preparing to unpack .../102-r-bioc-pcamethods_1.98.0-2_s390x.deb ...
1245s Unpacking r-bioc-pcamethods (1.98.0-2) ...
1245s Selecting previously unselected package r-cran-cli.
1245s Preparing to unpack .../103-r-cran-cli_3.6.4-1_s390x.deb ...
1245s Unpacking r-cran-cli (3.6.4-1) ...
1245s Selecting previously unselected package r-cran-colorspace.
1245s Preparing to unpack .../104-r-cran-colorspace_2.1-1+dfsg-1_s390x.deb ...
1245s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
1245s Selecting previously unselected package r-cran-fansi.
1245s Preparing to unpack .../105-r-cran-fansi_1.0.5-1_s390x.deb ...
1245s Unpacking r-cran-fansi (1.0.5-1) ...
1245s Selecting previously unselected package r-cran-farver.
1245s Preparing to unpack .../106-r-cran-farver_2.1.2-1_s390x.deb ...
1245s Unpacking r-cran-farver (2.1.2-1) ...
1245s Selecting previously unselected package r-cran-glue.
1245s Preparing to unpack .../107-r-cran-glue_1.8.0-1_s390x.deb ...
1245s Unpacking r-cran-glue (1.8.0-1) ...
1245s Selecting previously unselected package r-cran-rlang.
1245s Preparing to unpack .../108-r-cran-rlang_1.1.5-1_s390x.deb ...
1245s Unpacking r-cran-rlang (1.1.5-1) ...
1245s Selecting previously unselected package r-cran-lifecycle.
1245s Preparing to unpack .../109-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
1245s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
1245s Selecting previously unselected package r-cran-gtable.
1245s Preparing to unpack .../110-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
1245s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
1245s Selecting previously unselected package r-cran-isoband.
1245s Preparing to unpack .../111-r-cran-isoband_0.2.7-1_s390x.deb ...
1245s Unpacking r-cran-isoband (0.2.7-1) ...
1245s Selecting previously unselected package r-cran-lattice.
1245s Preparing to unpack .../112-r-cran-lattice_0.22-6-1_s390x.deb ...
1245s Unpacking r-cran-lattice (0.22-6-1) ...
1245s Selecting previously unselected package r-cran-nlme.
1245s Preparing to unpack .../113-r-cran-nlme_3.1.167-1_s390x.deb ...
1245s Unpacking r-cran-nlme (3.1.167-1) ...
1245s Selecting previously unselected package r-cran-matrix.
1245s Preparing to unpack .../114-r-cran-matrix_1.7-3-1_s390x.deb ...
1245s Unpacking r-cran-matrix (1.7-3-1) ...
1245s Selecting previously unselected package r-cran-mgcv.
1245s Preparing to unpack .../115-r-cran-mgcv_1.9-1-1_s390x.deb ...
1245s Unpacking r-cran-mgcv (1.9-1-1) ...
1245s Selecting previously unselected package r-cran-labeling.
1245s Preparing to unpack .../116-r-cran-labeling_0.4.3-1_all.deb ...
1245s Unpacking r-cran-labeling (0.4.3-1) ...
1245s Selecting previously unselected package r-cran-munsell.
1245s Preparing to unpack .../117-r-cran-munsell_0.5.1-1_all.deb ...
1245s Unpacking r-cran-munsell (0.5.1-1) ...
1245s Selecting previously unselected package r-cran-r6.
1245s Preparing to unpack .../118-r-cran-r6_2.6.1-1_all.deb ...
1245s Unpacking r-cran-r6 (2.6.1-1) ...
1245s Selecting previously unselected package r-cran-rcolorbrewer.
1245s Preparing to unpack .../119-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
1245s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
1245s Selecting previously unselected package r-cran-viridislite.
1245s Preparing to unpack .../120-r-cran-viridislite_0.4.2-2_all.deb ...
1245s Unpacking r-cran-viridislite (0.4.2-2) ...
1245s Selecting previously unselected package r-cran-scales.
1245s Preparing to unpack .../121-r-cran-scales_1.3.0-1_all.deb ...
1245s Unpacking r-cran-scales (1.3.0-1) ...
1245s Selecting previously unselected package r-cran-magrittr.
1245s Preparing to unpack .../122-r-cran-magrittr_2.0.3-1_s390x.deb ...
1245s Unpacking r-cran-magrittr (2.0.3-1) ...
1245s Selecting previously unselected package r-cran-utf8.
1245s Preparing to unpack .../123-r-cran-utf8_1.2.4-1_s390x.deb ...
1245s Unpacking r-cran-utf8 (1.2.4-1) ...
1245s Selecting previously unselected package r-cran-vctrs.
1245s Preparing to unpack .../124-r-cran-vctrs_0.6.5-1_s390x.deb ...
1245s Unpacking r-cran-vctrs (0.6.5-1) ...
1245s Selecting previously unselected package r-cran-pillar.
1245s Preparing to unpack .../125-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
1245s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
1245s Selecting previously unselected package r-cran-pkgconfig.
1245s Preparing to unpack .../126-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
1245s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
1245s Selecting previously unselected package r-cran-tibble.
1245s Preparing to unpack .../127-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ...
1245s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
1245s Selecting previously unselected package r-cran-withr.
1245s Preparing to unpack .../128-r-cran-withr_3.0.2+dfsg-1_all.deb ...
1245s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
1245s Selecting previously unselected package r-cran-ggplot2.
1245s Preparing to unpack .../129-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
1245s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
1245s Selecting previously unselected package r-cran-matrixstats.
1245s Preparing to unpack .../130-r-cran-matrixstats_1.5.0-1_s390x.deb ...
1245s Unpacking r-cran-matrixstats (1.5.0-1) ...
1245s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
1245s Setting up libpixman-1-0:s390x (0.44.0-3) ...
1245s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
1245s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
1245s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
1245s Setting up libdatrie1:s390x (0.2.13-3build1) ...
1245s Setting up libxcb-render0:s390x (1.17.0-2) ...
1245s Setting up unzip (6.0-28ubuntu6) ...
1245s Setting up x11-common (1:7.7+23ubuntu3) ...
1246s Setting up libdeflate0:s390x (1.23-1) ...
1246s Setting up libxcb-shm0:s390x (1.17.0-2) ...
1246s Setting up libreadline-dev:s390x (8.2-6) ...
1246s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
1246s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
1246s Setting up libpcre2-16-0:s390x (10.45-1) ...
1246s Setting up zip (3.0-14ubuntu2) ...
1246s Setting up libpcre2-32-0:s390x (10.45-1) ...
1246s Setting up libblas3:s390x (3.12.1-2) ...
1246s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
1246s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
1246s Setting up libpkgconf3:s390x (1.8.1-4) ...
1246s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
1246s Setting up fonts-dejavu-mono (2.37-8) ...
1246s Setting up libmpc3:s390x (1.3.1-1build2) ...
1246s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
1246s Setting up icu-devtools (76.1-1ubuntu2) ...
1246s Setting up fonts-dejavu-core (2.37-8) ...
1246s Setting up pkgconf-bin (1.8.1-4) ...
1246s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
1246s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
1246s Setting up libwebp7:s390x (1.5.0-0.1) ...
1246s Setting up liblzma-dev:s390x (5.6.4-1) ...
1246s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
1246s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1246s Setting up libpcre2-posix3:s390x (10.45-1) ...
1246s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
1246s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
1246s Setting up libthai-data (0.1.29-2build1) ...
1246s Setting up libxss1:s390x (1:1.2.3-1build3) ...
1246s Setting up libpaper2:s390x (2.2.5-0.3) ...
1246s Setting up libisl23:s390x (0.27-1) ...
1246s Setting up libdeflate-dev:s390x (1.23-1) ...
1246s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
1246s Setting up xdg-utils (1.2.1-2ubuntu1) ...
1246s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
1246s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
1246s Setting up libblas-dev:s390x (3.12.1-2) ...
1246s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
1246s Setting up dctrl-tools (2.24-3build3) ...
1246s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
1246s Setting up libbz2-dev:s390x (1.0.8-6) ...
1246s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
1246s Setting up libice6:s390x (2:1.1.1-1) ...
1246s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
1246s Setting up liblapack3:s390x (3.12.1-2) ...
1246s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
1246s Setting up libpcre2-dev:s390x (10.45-1) ...
1246s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
1246s Setting up libpng-dev:s390x (1.6.47-1) ...
1246s Setting up libpaper-utils (2.2.5-0.3) ...
1246s Setting up pkgconf:s390x (1.8.1-4) ...
1246s Setting up libthai0:s390x (0.1.29-2build1) ...
1246s Setting up liblapack-dev:s390x (3.12.1-2) ...
1246s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
1246s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1246s Setting up cpp-14 (14.2.0-17ubuntu3) ...
1246s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
1246s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
1246s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
1246s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
1246s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
1246s Setting up libsm6:s390x (2:1.2.4-1) ...
1246s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
1246s Setting up fontconfig (2.15.0-2ubuntu1) ...
1248s Regenerating fonts cache... done.
1248s Setting up libxft2:s390x (2.3.6-1build1) ...
1248s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1248s Setting up libtk8.6:s390x (8.6.16-1) ...
1248s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
1248s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
1248s Setting up libcairo2:s390x (1.18.2-2) ...
1248s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1248s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1248s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
1248s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1248s Setting up cpp (4:14.2.0-1ubuntu1) ...
1248s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
1248s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
1248s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
1248s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1248s Setting up gcc-14 (14.2.0-17ubuntu3) ...
1248s Setting up r-base-core (4.4.3-1) ...
1248s Creating config file /etc/R/Renviron with new version
1248s Setting up r-cran-labeling (0.4.3-1) ...
1248s Setting up r-cran-lattice (0.22-6-1) ...
1248s Setting up r-cran-nlme (3.1.167-1) ...
1248s Setting up r-cran-farver (2.1.2-1) ...
1248s Setting up r-cran-viridislite (0.4.2-2) ...
1248s Setting up g++-14 (14.2.0-17ubuntu3) ...
1248s Setting up r-cran-r6 (2.6.1-1) ...
1248s Setting up r-cran-pkgkitten (0.2.4-1) ...
1248s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
1248s Setting up r-cran-magrittr (2.0.3-1) ...
1248s Setting up r-cran-littler (0.3.20-2) ...
1248s Setting up r-cran-rcpp (1.0.14-1) ...
1248s Setting up r-bioc-biocgenerics (0.52.0-2) ...
1248s Setting up r-cran-rlang (1.1.5-1) ...
1248s Setting up r-cran-matrixstats (1.5.0-1) ...
1248s Setting up littler (0.3.20-2) ...
1248s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
1248s Setting up r-cran-withr (3.0.2+dfsg-1) ...
1248s Setting up r-cran-fansi (1.0.5-1) ...
1248s Setting up r-cran-mass (7.3-64-1) ...
1248s Setting up r-cran-glue (1.8.0-1) ...
1248s Setting up r-cran-cli (3.6.4-1) ...
1248s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
1248s Setting up gcc (4:14.2.0-1ubuntu1) ...
1248s Setting up r-bioc-biobase (2.66.0-2) ...
1248s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
1248s Setting up r-cran-utf8 (1.2.4-1) ...
1248s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
1248s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
1248s Setting up r-cran-isoband (0.2.7-1) ...
1248s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
1248s Setting up r-cran-matrix (1.7-3-1) ...
1248s Setting up r-cran-mgcv (1.9-1-1) ...
1248s Setting up g++ (4:14.2.0-1ubuntu1) ...
1248s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1248s Setting up build-essential (12.10ubuntu1) ...
1248s Setting up r-cran-vctrs (0.6.5-1) ...
1248s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
1248s Setting up r-cran-munsell (0.5.1-1) ...
1248s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
1248s Setting up r-bioc-pcamethods (1.98.0-2) ...
1248s Setting up gfortran (4:14.2.0-1ubuntu1) ...
1248s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
1248s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
1248s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
1248s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
1248s Setting up r-cran-scales (1.3.0-1) ...
1248s Setting up r-base-dev (4.4.3-1) ...
1248s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
1248s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
1248s Processing triggers for libc-bin (2.41-1ubuntu2) ...
1248s Processing triggers for man-db (2.13.0-1) ...
1250s Processing triggers for install-info (7.1.1-1) ...
1251s autopkgtest [18:06:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
1251s autopkgtest [18:06:39]: test pkg-r-autopkgtest: [-----------------------
1251s Test: Try to load the R library pcaMethods
1251s 
1251s R version 4.4.3 (2025-02-28) -- "Trophy Case"
1251s Copyright (C) 2025 The R Foundation for Statistical Computing
1251s Platform: s390x-ibm-linux-gnu
1251s 
1251s R is free software and comes with ABSOLUTELY NO WARRANTY.
1251s You are welcome to redistribute it under certain conditions.
1251s Type 'license()' or 'licence()' for distribution details.
1251s 
1251s R is a collaborative project with many contributors.
1251s Type 'contributors()' for more information and
1251s 'citation()' on how to cite R or R packages in publications.
1251s 
1251s Type 'demo()' for some demos, 'help()' for on-line help, or
1251s 'help.start()' for an HTML browser interface to help.
1251s Type 'q()' to quit R.
1251s 
1251s > library('pcaMethods')
1251s Loading required package: Biobase
1251s Loading required package: BiocGenerics
1251s 
1251s Attaching package: ‘BiocGenerics’
1251s 
1251s The following objects are masked from ‘package:stats’:
1251s 
1251s     IQR, mad, sd, var, xtabs
1251s 
1251s The following objects are masked from ‘package:base’:
1251s 
1251s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
1251s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
1251s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
1251s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
1251s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
1251s     table, tapply, union, unique, unsplit, which.max, which.min
1251s 
1251s Welcome to Bioconductor
1251s 
1251s     Vignettes contain introductory material; view with
1251s     'browseVignettes()'. To cite Bioconductor, see
1251s     'citation("Biobase")', and for packages 'citation("pkgname")'.
1251s 
1251s > 
1251s > 
1251s 
1251s Attaching package: ‘pcaMethods’
1251s 
1251s The following object is masked from ‘package:stats’:
1251s 
1251s     loadings
1251s 
1251s Other tests are currently unsupported!
1251s They will be progressively added.
1252s autopkgtest [18:06:40]: test pkg-r-autopkgtest: -----------------------]
1252s pkg-r-autopkgtest    PASS
1252s autopkgtest [18:06:40]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
1252s autopkgtest [18:06:40]: @@@@@@@@@@@@@@@@@@@@ summary
1252s pkg-r-autopkgtest    PASS
1270s nova [W] Using flock in prodstack6-s390x
1270s Creating nova instance adt-plucky-s390x-r-bioc-pcamethods-20250315-174548-juju-7f2275-prod-proposed-migration-environment-20-6d7f9001-5695-44ea-b883-9ccf8d07c517 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
1270s nova [W] nova quota exceeded (attempt #0)
1270s nova [W] Timed out waiting for afc9832f-d4b4-4aa0-92af-c982e98f9923 to get deleted.