0s autopkgtest [17:45:46]: starting date and time: 2025-03-15 17:45:46+0000 0s autopkgtest [17:45:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:45:46]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2c_ma537/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-oligo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-20.secgroup --name adt-plucky-s390x-r-bioc-oligo-20250315-174546-juju-7f2275-prod-proposed-migration-environment-15-2c533309-ecae-411e-b21e-c208e9c0c70e --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1043s autopkgtest [18:03:09]: testbed dpkg architecture: s390x 1043s autopkgtest [18:03:09]: testbed apt version: 2.9.33 1043s autopkgtest [18:03:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1043s autopkgtest [18:03:09]: testbed release detected to be: None 1044s autopkgtest [18:03:10]: updating testbed package index (apt update) 1044s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 1045s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 1045s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 1045s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 1045s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 1045s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 1045s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 1045s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 1046s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 1046s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 1046s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 1046s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 1046s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 1046s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 1046s Fetched 1073 kB in 2s (639 kB/s) 1048s Reading package lists... 1048s + lsb_release --codename --short 1048s Reading package lists... 1048s Building dependency tree... 1048s Reading state information... 1048s Calculating upgrade... 1048s Calculating upgrade... 1048s The following packages were automatically installed and are no longer required: 1048s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 1048s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 1048s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 1048s linux-tools-6.11.0-8-generic 1048s Use 'sudo apt autoremove' to remove them. 1048s + RELEASE=plucky 1048s + cat 1048s + [ plucky != trusty ] 1048s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 1048s The following packages will be upgraded: 1048s pinentry-curses python3-jinja2 strace 1048s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1048s Need to get 652 kB of archives. 1048s After this operation, 27.6 kB of additional disk space will be used. 1048s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 1049s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 1049s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 1049s Fetched 652 kB in 1s (658 kB/s) 1049s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 1049s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 1049s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 1049s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 1049s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 1049s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 1049s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 1049s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 1049s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 1049s Setting up strace (6.13+ds-1ubuntu1) ... 1049s Processing triggers for man-db (2.13.0-1) ... 1050s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 1050s + /usr/lib/apt/apt-helper analyze-pattern ?true 1050s + uname -r 1050s + sed s/\./\\./g 1050s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 1050s + apt list ?obsolete 1050s + tail -n+2 1050s + cut -d/+ grep -v ^linux-.*6\.14\.0-10-generic.* 1050s -f1 1050s + obsolete_pkgs=linux-headers-6.11.0-8-generic 1050s linux-headers-6.11.0-8 1050s linux-modules-6.11.0-8-generic 1050s linux-tools-6.11.0-8-generic 1050s linux-tools-6.11.0-8 1050s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 1050s Reading package lists... 1050s Building dependency tree... 1050s Reading state information... 1050s Solving dependencies... 1050s The following packages will be REMOVED: 1050s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 1050s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 1050s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 1050s linux-tools-6.11.0-8-generic* 1051s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 1051s After this operation, 167 MB disk space will be freed. 1051s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 1051s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 1051s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 1051s Removing libpython3.12t64:s390x (3.12.9-1) ... 1051s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 1051s Removing libnsl2:s390x (1.3.0-3build3) ... 1051s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 1051s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 1051s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 1052s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1052s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1052s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 1052s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 1052s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1052s + grep -q trusty /etc/lsb-release 1052s + [ ! -d /usr/share/doc/unattended-upgrades ] 1052s + [ ! -d /usr/share/doc/lxd ] 1052s + [ ! -d /usr/share/doc/lxd-client ] 1052s + [ ! -d /usr/share/doc/snapd ] 1052s + type iptables 1052s + cat 1052s + chmod 755 /etc/rc.local 1052s + . /etc/rc.local 1052s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 1052s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 1052s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 1052s + uname -m 1052s + [ s390x = ppc64le ] 1052s + [ -d /run/systemd/system ] 1052s + systemd-detect-virt --quiet --vm 1052s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 1052s + cat 1052s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 1052s + echo COMPRESS=lz4 1052s autopkgtest [18:03:18]: upgrading testbed (apt dist-upgrade and autopurge) 1052s Reading package lists... 1052s Building dependency tree... 1052s Reading state information... 1053s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 1053s Starting 2 pkgProblemResolver with broken count: 0 1053s Done 1053s Entering ResolveByKeep 1053s 1053s Calculating upgrade... 1053s The following packages will be upgraded: 1053s libc-bin libc-dev-bin libc6 libc6-dev locales 1053s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1053s Need to get 9512 kB of archives. 1053s After this operation, 8192 B of additional disk space will be used. 1053s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 1055s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 1055s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 1058s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 1059s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 1063s Preconfiguring packages ... 1063s Fetched 9512 kB in 10s (996 kB/s) 1063s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 1063s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 1063s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1063s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 1063s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1063s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 1063s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1063s Setting up libc6:s390x (2.41-1ubuntu2) ... 1063s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 1063s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 1063s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1064s Setting up libc-bin (2.41-1ubuntu2) ... 1064s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 1064s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 1064s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1064s Setting up locales (2.41-1ubuntu2) ... 1064s Generating locales (this might take a while)... 1065s en_US.UTF-8... done 1065s Generation complete. 1065s Setting up libc-dev-bin (2.41-1ubuntu2) ... 1065s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 1065s Processing triggers for man-db (2.13.0-1) ... 1066s Processing triggers for systemd (257.3-1ubuntu3) ... 1066s Reading package lists... 1067s Building dependency tree... 1067s Reading state information... 1067s Starting pkgProblemResolver with broken count: 0 1067s Starting 2 pkgProblemResolver with broken count: 0 1067s Done 1067s Solving dependencies... 1067s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1067s autopkgtest [18:03:33]: rebooting testbed after setup commands that affected boot 1088s autopkgtest [18:03:54]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 1091s autopkgtest [18:03:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-oligo 1093s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (dsc) [2274 B] 1093s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (tar) [178 kB] 1093s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (diff) [4724 B] 1093s gpgv: Signature made Mon Jan 13 14:20:42 2025 UTC 1093s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 1093s gpgv: issuer "crusoe@debian.org" 1093s gpgv: Can't check signature: No public key 1093s dpkg-source: warning: cannot verify inline signature for ./r-bioc-oligo_1.70.0+ds-2.dsc: no acceptable signature found 1093s autopkgtest [18:03:59]: testing package r-bioc-oligo version 1.70.0+ds-2 1093s autopkgtest [18:03:59]: build not needed 1099s autopkgtest [18:04:05]: test pkg-r-autopkgtest: preparing testbed 1099s Reading package lists... 1100s Building dependency tree... 1100s Reading state information... 1100s Starting pkgProblemResolver with broken count: 0 1100s Starting 2 pkgProblemResolver with broken count: 0 1100s Done 1100s The following NEW packages will be installed: 1100s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 1100s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1100s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 1100s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 1100s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 1100s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 1100s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 1100s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 1100s libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev libgfortran5 1100s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 1100s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 1100s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 1100s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 1100s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 1100s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 1100s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 1100s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 1100s liblzma-dev libmpc3 libmpfi0 libncurses-dev libpango-1.0-0 1100s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 1100s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 1100s libpng-dev libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 1100s libstdc++-14-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 1100s libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 1100s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 1100s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 1100s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 1100s r-base-core r-base-dev r-bioc-affxparser r-bioc-affyio r-bioc-annotate 1100s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 1100s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 1100s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 1100s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 1100s r-bioc-limma r-bioc-matrixgenerics r-bioc-oligo r-bioc-oligoclasses 1100s r-bioc-preprocesscore r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 1100s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 1100s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit 1100s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 1100s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 1100s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 1100s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-ff 1100s r-cran-filelock r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-generics 1100s r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 1100s r-cran-httr r-cran-httr2 r-cran-iterators r-cran-jquerylib r-cran-jsonlite 1100s r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 1100s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 1100s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 1100s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 1100s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 1100s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass 1100s r-cran-shiny r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 1100s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 1100s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 1100s r-cran-xml2 r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 1100s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 1100s xdg-utils zip zlib1g-dev 1100s 0 upgraded, 265 newly installed, 0 to remove and 0 not upgraded. 1100s Need to get 424 MB of archives. 1100s After this operation, 1258 MB of additional disk space will be used. 1100s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 1101s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 1101s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 1111s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 1111s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 1111s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 1111s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 1111s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 1111s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 1111s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 1115s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 1116s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 1117s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 1133s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 1134s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 1134s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 1134s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 1136s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 1146s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 1146s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 1146s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 1146s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 1146s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 1146s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 1146s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 1146s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 1147s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 1147s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 1147s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 1148s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1148s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1148s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 1153s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1155s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 1155s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 1156s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 1167s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 1167s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 1167s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 1167s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 1167s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B] 1167s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB] 1167s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB] 1167s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 1167s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 1168s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 1168s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 1168s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 1168s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 1168s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 1168s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 1168s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 1169s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 1169s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 1169s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 1169s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 1169s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 1169s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1169s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 1169s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 1181s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 1182s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 1182s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 1182s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 1182s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 1182s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1182s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1182s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1182s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 1183s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 1183s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1183s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1183s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1184s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1184s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1184s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1184s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1184s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1184s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 1184s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1184s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB] 1184s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 1188s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 1194s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 1194s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB] 1194s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 1195s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 1195s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 1195s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 1195s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 1195s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 1195s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 1195s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 1195s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 1196s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 1196s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 1196s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 1197s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 1197s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 1199s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 1199s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB] 1200s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB] 1200s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 1200s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 1200s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 1200s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB] 1200s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 1201s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 1201s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB] 1201s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 1201s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 1202s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 1202s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 1202s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 1202s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 1203s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 1203s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 1203s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB] 1203s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB] 1203s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 1203s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB] 1203s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 1203s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 1203s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 1203s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 1229s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 1229s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 1229s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 1229s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1229s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 1229s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 1229s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 1283s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 1283s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 1283s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 1283s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 1283s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 1283s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1283s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 1284s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affxparser s390x 1.78.0-2 [1035 kB] 1285s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 1285s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affyio s390x 1.76.0-2 [98.5 kB] 1285s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 1287s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 1289s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 1292s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB] 1292s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB] 1293s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB] 1293s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 1295s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 1297s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 1297s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1297s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 1299s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 1299s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 1299s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 1299s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 1299s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 1299s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 1299s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 1299s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB] 1301s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 1301s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 1301s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 1301s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 1301s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 1301s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 1302s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 1302s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1302s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 1302s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 1303s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 1303s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 1319s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 1323s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 1323s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 1339s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 1340s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 1345s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 1347s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 1347s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 1350s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 1350s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 1350s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 1350s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 1351s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 1351s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB] 1352s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 1352s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyselect s390x 1.2.1+dfsg-1 [222 kB] 1352s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dplyr s390x 1.1.4-4 [1537 kB] 1354s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-purrr s390x 1.0.4-1 [553 kB] 1355s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringi s390x 1.8.4-1build1 [917 kB] 1356s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringr all 1.5.1-1 [290 kB] 1356s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB] 1357s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 1359s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB] 1359s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 1359s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 1359s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 1360s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 1360s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 1360s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 1361s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 1361s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 1361s Get:205 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1367s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 1368s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1368s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 1368s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 1368s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 1369s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 1373s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB] 1375s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB] 1375s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 1375s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 1375s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 1377s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 1377s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 1377s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 1378s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 1378s Get:221 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 1378s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1378s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 1381s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 1383s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 1384s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 1384s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB] 1384s Get:228 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB] 1384s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB] 1393s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB] 1412s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB] 1413s Get:232 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 1489s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB] 1489s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 1489s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB] 1489s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB] 1490s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB] 1490s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr2 all 1.1.1-1 [752 kB] 1491s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml2 s390x 1.3.7-1 [328 kB] 1491s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 1491s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 1493s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 1499s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB] 1499s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 1500s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 1500s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB] 1501s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB] 1503s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB] 1505s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB] 1515s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genefilter s390x 1.88.0-2 [1239 kB] 1517s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB] 1519s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 1519s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB] 1521s Get:254 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 1522s Get:255 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB] 1522s Get:256 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-iterators all 1.0.14-1 [336 kB] 1523s Get:257 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-foreach all 1.5.2-1 [124 kB] 1523s Get:258 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ff s390x 4.5.2+ds-1 [1020 kB] 1524s Get:259 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-oligoclasses all 1.68.0-2 [1259 kB] 1525s Get:260 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-preprocesscore s390x 1.68.0+ds-2 [177 kB] 1526s Get:261 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-oligo s390x 1.70.0+ds-2 [923 kB] 1526s Get:262 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 1527s Get:263 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 1527s Get:264 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 1527s Get:265 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB] 1529s Preconfiguring packages ... 1529s Fetched 424 MB in 7min 8s (992 kB/s) 1529s Selecting previously unselected package libisl23:s390x. 1529s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 1529s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 1529s Unpacking libisl23:s390x (0.27-1) ... 1529s Selecting previously unselected package libmpc3:s390x. 1529s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 1529s Unpacking libmpc3:s390x (1.3.1-1build2) ... 1529s Selecting previously unselected package cpp-14-s390x-linux-gnu. 1529s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 1529s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 1529s Selecting previously unselected package cpp-14. 1529s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 1529s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 1529s Selecting previously unselected package cpp-s390x-linux-gnu. 1529s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 1529s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 1529s Selecting previously unselected package cpp. 1529s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 1529s Unpacking cpp (4:14.2.0-1ubuntu1) ... 1529s Selecting previously unselected package libcc1-0:s390x. 1529s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 1529s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 1529s Selecting previously unselected package libgomp1:s390x. 1529s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 1529s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 1529s Selecting previously unselected package libitm1:s390x. 1529s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ... 1529s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 1529s Selecting previously unselected package libasan8:s390x. 1529s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ... 1529s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 1529s Selecting previously unselected package libubsan1:s390x. 1529s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 1529s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 1529s Selecting previously unselected package libgcc-14-dev:s390x. 1529s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 1529s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 1529s Selecting previously unselected package gcc-14-s390x-linux-gnu. 1529s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 1529s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 1529s Selecting previously unselected package gcc-14. 1529s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 1529s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 1529s Selecting previously unselected package gcc-s390x-linux-gnu. 1529s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 1529s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 1529s Selecting previously unselected package gcc. 1529s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 1529s Unpacking gcc (4:14.2.0-1ubuntu1) ... 1529s Selecting previously unselected package libstdc++-14-dev:s390x. 1529s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 1529s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 1529s Selecting previously unselected package g++-14-s390x-linux-gnu. 1529s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 1529s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 1530s Selecting previously unselected package g++-14. 1530s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ... 1530s Unpacking g++-14 (14.2.0-17ubuntu3) ... 1530s Selecting previously unselected package g++-s390x-linux-gnu. 1530s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 1530s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 1530s Selecting previously unselected package g++. 1530s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 1530s Unpacking g++ (4:14.2.0-1ubuntu1) ... 1530s Selecting previously unselected package build-essential. 1530s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ... 1530s Unpacking build-essential (12.10ubuntu1) ... 1530s Selecting previously unselected package dctrl-tools. 1530s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 1530s Unpacking dctrl-tools (2.24-3build3) ... 1530s Selecting previously unselected package libfreetype6:s390x. 1530s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 1530s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 1530s Selecting previously unselected package fonts-dejavu-mono. 1530s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 1530s Unpacking fonts-dejavu-mono (2.37-8) ... 1530s Selecting previously unselected package fonts-dejavu-core. 1530s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 1530s Unpacking fonts-dejavu-core (2.37-8) ... 1530s Selecting previously unselected package fontconfig-config. 1530s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 1530s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 1530s Selecting previously unselected package libfontconfig1:s390x. 1530s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 1530s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 1530s Selecting previously unselected package fontconfig. 1530s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 1530s Unpacking fontconfig (2.15.0-2ubuntu1) ... 1530s Selecting previously unselected package fonts-font-awesome. 1530s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1530s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1530s Selecting previously unselected package fonts-glyphicons-halflings. 1530s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1530s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1530s Selecting previously unselected package fonts-lmodern. 1530s Preparing to unpack .../031-fonts-lmodern_2.005-1_all.deb ... 1530s Unpacking fonts-lmodern (2.005-1) ... 1530s Selecting previously unselected package fonts-mathjax. 1530s Preparing to unpack .../032-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1530s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1530s Selecting previously unselected package libgfortran5:s390x. 1530s Preparing to unpack .../033-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 1530s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 1530s Selecting previously unselected package libgfortran-14-dev:s390x. 1530s Preparing to unpack .../034-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 1530s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 1530s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 1530s Preparing to unpack .../035-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 1530s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 1530s Selecting previously unselected package gfortran-14. 1530s Preparing to unpack .../036-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 1530s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 1530s Selecting previously unselected package gfortran-s390x-linux-gnu. 1530s Preparing to unpack .../037-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 1530s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 1530s Selecting previously unselected package gfortran. 1530s Preparing to unpack .../038-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 1530s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 1530s Selecting previously unselected package icu-devtools. 1530s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_s390x.deb ... 1530s Unpacking icu-devtools (76.1-1ubuntu2) ... 1530s Selecting previously unselected package javascript-common. 1530s Preparing to unpack .../040-javascript-common_12_all.deb ... 1530s Unpacking javascript-common (12) ... 1530s Selecting previously unselected package libio-string-perl. 1530s Preparing to unpack .../041-libio-string-perl_1.08-4_all.deb ... 1530s Unpacking libio-string-perl (1.08-4) ... 1530s Selecting previously unselected package liblatex-tounicode-perl. 1530s Preparing to unpack .../042-liblatex-tounicode-perl_0.55-1_all.deb 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Selecting previously unselected package libxcb-render0:s390x. 1530s Preparing to unpack .../048-libxcb-render0_1.17.0-2_s390x.deb ... 1530s Unpacking libxcb-render0:s390x (1.17.0-2) ... 1530s Selecting previously unselected package libxcb-shm0:s390x. 1530s Preparing to unpack .../049-libxcb-shm0_1.17.0-2_s390x.deb ... 1530s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 1531s Selecting previously unselected package libxrender1:s390x. 1531s Preparing to unpack .../050-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 1531s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 1531s Selecting previously unselected package libcairo2:s390x. 1531s Preparing to unpack .../051-libcairo2_1.18.2-2_s390x.deb ... 1531s Unpacking libcairo2:s390x (1.18.2-2) ... 1531s Selecting previously unselected package libdatrie1:s390x. 1531s Preparing to unpack .../052-libdatrie1_0.2.13-3build1_s390x.deb ... 1531s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 1531s Selecting previously unselected package libdeflate0:s390x. 1531s Preparing to unpack .../053-libdeflate0_1.23-1_s390x.deb ... 1531s Unpacking libdeflate0:s390x (1.23-1) ... 1531s Selecting previously unselected package libdeflate-dev:s390x. 1531s Preparing to unpack .../054-libdeflate-dev_1.23-1_s390x.deb ... 1531s Unpacking libdeflate-dev:s390x (1.23-1) ... 1531s Selecting previously unselected package libgraphite2-3:s390x. 1531s Preparing to unpack .../055-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 1531s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 1531s Selecting previously unselected package libharfbuzz0b:s390x. 1531s Preparing to unpack .../056-libharfbuzz0b_10.2.0-1_s390x.deb ... 1531s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 1531s Selecting previously unselected package x11-common. 1531s Preparing to unpack .../057-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1531s Unpacking x11-common (1:7.7+23ubuntu3) ... 1531s Selecting previously unselected package libice6:s390x. 1531s Preparing to unpack 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libjs-d3 (3.5.17-4) ... 1531s Selecting previously unselected package libjs-es5-shim. 1531s Preparing to unpack .../069-libjs-es5-shim_4.6.7-2_all.deb ... 1531s Unpacking libjs-es5-shim (4.6.7-2) ... 1531s Selecting previously unselected package libjs-highlight.js. 1531s Preparing to unpack .../070-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 1531s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 1531s Selecting previously unselected package libjs-jquery. 1531s Preparing to unpack .../071-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1531s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1531s Selecting previously unselected package libjs-jquery-datatables. 1531s Preparing to unpack .../072-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 1531s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 1531s Selecting previously unselected package libjs-sifter.js. 1531s Preparing to unpack .../073-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 1531s Unpacking libjs-sifter.js (0.6.0+dfsg-3) 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Selecting previously unselected package libjs-prettify. 1531s Preparing to unpack .../079-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 1531s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 1531s Selecting previously unselected package libkpathsea6:s390x. 1531s Preparing to unpack .../080-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ... 1531s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ... 1531s Selecting previously unselected package liblapack3:s390x. 1531s Preparing to unpack .../081-liblapack3_3.12.1-2_s390x.deb ... 1531s Unpacking liblapack3:s390x (3.12.1-2) ... 1531s Selecting previously unselected package liblapack-dev:s390x. 1531s Preparing to unpack .../082-liblapack-dev_3.12.1-2_s390x.deb ... 1531s Unpacking liblapack-dev:s390x (3.12.1-2) ... 1531s Selecting previously unselected package liblua5.4-0:s390x. 1531s Preparing to unpack .../083-liblua5.4-0_5.4.7-1_s390x.deb ... 1531s Unpacking liblua5.4-0:s390x (5.4.7-1) ... 1531s Selecting previously unselected package libmpfi0:s390x. 1531s Preparing to unpack .../084-libmpfi0_1.5.4+ds-4_s390x.deb ... 1531s Unpacking libmpfi0:s390x (1.5.4+ds-4) ... 1531s Selecting previously unselected package libncurses-dev:s390x. 1531s Preparing to unpack .../085-libncurses-dev_6.5+20250216-2_s390x.deb ... 1531s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 1531s Selecting previously unselected package libthai-data. 1531s Preparing to unpack .../086-libthai-data_0.1.29-2build1_all.deb ... 1531s Unpacking libthai-data (0.1.29-2build1) ... 1531s Selecting previously unselected package libthai0:s390x. 1531s Preparing to unpack .../087-libthai0_0.1.29-2build1_s390x.deb ... 1531s Unpacking libthai0:s390x (0.1.29-2build1) ... 1531s Selecting previously unselected package libpango-1.0-0:s390x. 1531s Preparing to unpack .../088-libpango-1.0-0_1.56.2-1_s390x.deb ... 1531s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 1531s Selecting previously unselected package libpangoft2-1.0-0:s390x. 1531s Preparing to unpack .../089-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 1531s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 1531s Selecting previously unselected package libpangocairo-1.0-0:s390x. 1531s Preparing to unpack .../090-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 1531s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 1531s Selecting previously unselected package libpaper2:s390x. 1531s Preparing to unpack .../091-libpaper2_2.2.5-0.3_s390x.deb ... 1531s Unpacking libpaper2:s390x (2.2.5-0.3) ... 1531s Selecting previously unselected package libpaper-utils. 1531s Preparing to unpack .../092-libpaper-utils_2.2.5-0.3_s390x.deb ... 1531s Unpacking libpaper-utils (2.2.5-0.3) ... 1531s Selecting previously unselected package libpcre2-16-0:s390x. 1531s Preparing to unpack .../093-libpcre2-16-0_10.45-1_s390x.deb ... 1531s Unpacking libpcre2-16-0:s390x (10.45-1) ... 1531s Selecting previously unselected package libpcre2-32-0:s390x. 1531s Preparing to unpack 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.../104-libsm6_2%3a1.2.4-1_s390x.deb ... 1532s Unpacking libsm6:s390x (2:1.2.4-1) ... 1532s Selecting previously unselected package libsynctex2:s390x. 1532s Preparing to unpack .../105-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ... 1532s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ... 1532s Selecting previously unselected package libtcl8.6:s390x. 1532s Preparing to unpack .../106-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 1532s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 1532s Selecting previously unselected package libteckit0:s390x. 1532s Preparing to unpack .../107-libteckit0_2.5.12+ds1-1_s390x.deb ... 1532s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 1532s Selecting previously unselected package libtexlua53-5:s390x. 1532s Preparing to unpack .../108-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ... 1532s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ... 1532s Selecting previously unselected package libjbig0:s390x. 1532s Preparing to unpack .../109-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 1532s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 1532s Selecting previously unselected package libwebp7:s390x. 1532s Preparing to unpack .../110-libwebp7_1.5.0-0.1_s390x.deb ... 1532s Unpacking libwebp7:s390x (1.5.0-0.1) ... 1532s Selecting previously unselected package libtiff6:s390x. 1532s Preparing to unpack .../111-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 1532s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 1532s Selecting previously unselected package libxft2:s390x. 1532s Preparing to unpack .../112-libxft2_2.3.6-1build1_s390x.deb ... 1532s Unpacking libxft2:s390x (2.3.6-1build1) ... 1532s Selecting previously unselected package libxss1:s390x. 1532s Preparing to unpack .../113-libxss1_1%3a1.2.3-1build3_s390x.deb ... 1532s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 1532s Selecting previously unselected package libtk8.6:s390x. 1532s Preparing to unpack .../114-libtk8.6_8.6.16-1_s390x.deb ... 1532s Unpacking libtk8.6:s390x (8.6.16-1) ... 1532s Selecting previously unselected package libxt6t64:s390x. 1532s Preparing to unpack .../115-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 1532s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 1532s Selecting previously unselected package libxmu6:s390x. 1532s Preparing to unpack .../116-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 1532s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 1532s Selecting previously unselected package libxpm4:s390x. 1532s Preparing to unpack .../117-libxpm4_1%3a3.5.17-1build2_s390x.deb ... 1532s Unpacking libxpm4:s390x (1:3.5.17-1build2) ... 1532s Selecting previously unselected package libxaw7:s390x. 1532s Preparing to unpack .../118-libxaw7_2%3a1.0.16-1_s390x.deb ... 1532s Unpacking libxaw7:s390x (2:1.0.16-1) ... 1532s Selecting previously unselected package libxi6:s390x. 1532s Preparing to unpack .../119-libxi6_2%3a1.8.2-1_s390x.deb ... 1532s Unpacking libxi6:s390x (2:1.8.2-1) ... 1532s Selecting previously unselected package libzzip-0-13t64:s390x. 1532s Preparing to unpack .../120-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ... 1532s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 1532s Selecting previously unselected package zip. 1532s Preparing to unpack .../121-zip_3.0-14ubuntu2_s390x.deb ... 1532s Unpacking zip (3.0-14ubuntu2) ... 1532s Selecting previously unselected package unzip. 1532s Preparing to unpack .../122-unzip_6.0-28ubuntu6_s390x.deb ... 1532s Unpacking unzip (6.0-28ubuntu6) ... 1532s Selecting previously unselected package xdg-utils. 1532s Preparing to unpack .../123-xdg-utils_1.2.1-2ubuntu1_all.deb ... 1532s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 1532s Selecting previously unselected package r-base-core. 1532s Preparing to unpack .../124-r-base-core_4.4.3-1_s390x.deb ... 1532s Unpacking r-base-core (4.4.3-1) ... 1532s Selecting previously unselected package r-cran-littler. 1532s Preparing to unpack .../125-r-cran-littler_0.3.20-2_s390x.deb ... 1532s Unpacking r-cran-littler (0.3.20-2) ... 1532s Selecting previously unselected package littler. 1532s Preparing to unpack .../126-littler_0.3.20-2_all.deb ... 1532s Unpacking littler (0.3.20-2) ... 1532s Selecting previously unselected package node-bootstrap-sass. 1532s Preparing to unpack .../127-node-bootstrap-sass_3.4.3-2_all.deb ... 1532s Unpacking node-bootstrap-sass (3.4.3-2) ... 1532s Selecting previously unselected package node-html5shiv. 1532s Preparing to unpack .../128-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1532s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1532s Selecting previously unselected package node-normalize.css. 1532s Preparing to unpack .../129-node-normalize.css_8.0.1-5_all.deb ... 1532s Unpacking node-normalize.css (8.0.1-5) ... 1532s Selecting previously unselected package pandoc-data. 1532s Preparing to unpack .../130-pandoc-data_3.1.11.1-3build1_all.deb ... 1532s Unpacking pandoc-data (3.1.11.1-3build1) ... 1532s Selecting previously unselected package pandoc. 1532s Preparing to unpack .../131-pandoc_3.1.11.1+ds-2_s390x.deb ... 1532s Unpacking pandoc (3.1.11.1+ds-2) ... 1533s Selecting previously unselected package liblzma-dev:s390x. 1533s Preparing to unpack .../132-liblzma-dev_5.6.4-1_s390x.deb ... 1533s Unpacking liblzma-dev:s390x (5.6.4-1) ... 1533s Selecting previously unselected package pkgconf-bin. 1533s Preparing to unpack .../133-pkgconf-bin_1.8.1-4_s390x.deb ... 1533s Unpacking pkgconf-bin (1.8.1-4) ... 1533s Selecting previously unselected package pkgconf:s390x. 1533s Preparing to unpack .../134-pkgconf_1.8.1-4_s390x.deb ... 1533s Unpacking pkgconf:s390x (1.8.1-4) ... 1533s Selecting previously unselected package libtirpc-dev:s390x. 1533s Preparing to unpack .../135-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 1533s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 1533s Selecting previously unselected package r-base-dev. 1533s Preparing to unpack .../136-r-base-dev_4.4.3-1_all.deb ... 1533s Unpacking r-base-dev (4.4.3-1) ... 1533s Selecting previously unselected package pkg-r-autopkgtest. 1533s Preparing to unpack .../137-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 1533s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 1533s Selecting previously unselected package r-bioc-biocgenerics. 1533s Preparing to unpack .../138-r-bioc-biocgenerics_0.52.0-2_all.deb ... 1533s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 1533s Selecting previously unselected package r-bioc-affxparser. 1533s Preparing to unpack .../139-r-bioc-affxparser_1.78.0-2_s390x.deb ... 1533s Unpacking r-bioc-affxparser (1.78.0-2) ... 1533s Selecting previously unselected package r-bioc-zlibbioc. 1533s Preparing to unpack .../140-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 1533s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1533s Selecting previously unselected package r-bioc-affyio. 1533s Preparing to unpack .../141-r-bioc-affyio_1.76.0-2_s390x.deb ... 1533s Unpacking r-bioc-affyio (1.76.0-2) ... 1533s Selecting previously unselected package r-bioc-biobase. 1534s Preparing to unpack .../142-r-bioc-biobase_2.66.0-2_s390x.deb ... 1534s Unpacking r-bioc-biobase (2.66.0-2) ... 1534s Selecting previously unselected package r-bioc-s4vectors. 1534s Preparing to unpack .../143-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 1534s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 1534s Selecting previously unselected package r-bioc-iranges. 1534s Preparing to unpack .../144-r-bioc-iranges_2.40.1-2_s390x.deb ... 1534s Unpacking r-bioc-iranges (2.40.1-2) ... 1534s Selecting previously unselected package r-cran-dbi. 1534s Preparing to unpack .../145-r-cran-dbi_1.2.3-1_all.deb ... 1534s Unpacking r-cran-dbi (1.2.3-1) ... 1534s Selecting previously unselected package r-cran-bit. 1534s Preparing to unpack .../146-r-cran-bit_4.6.0+dfsg-1_s390x.deb ... 1534s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 1534s Selecting previously unselected package r-cran-bit64. 1534s Preparing to unpack .../147-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ... 1534s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 1534s Selecting previously unselected package r-cran-rlang. 1534s Preparing to unpack .../148-r-cran-rlang_1.1.5-1_s390x.deb ... 1534s Unpacking r-cran-rlang (1.1.5-1) ... 1534s Selecting previously unselected package r-cran-cli. 1534s Preparing to unpack .../149-r-cran-cli_3.6.4-1_s390x.deb ... 1534s Unpacking r-cran-cli (3.6.4-1) ... 1534s Selecting previously unselected package r-cran-glue. 1534s Preparing to unpack .../150-r-cran-glue_1.8.0-1_s390x.deb ... 1534s Unpacking r-cran-glue (1.8.0-1) ... 1534s Selecting previously unselected package r-cran-lifecycle. 1534s Preparing to unpack .../151-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1534s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1534s Selecting previously unselected package r-cran-vctrs. 1534s Preparing to unpack .../152-r-cran-vctrs_0.6.5-1_s390x.deb ... 1534s Unpacking r-cran-vctrs (0.6.5-1) ... 1534s Selecting previously unselected package r-cran-blob. 1534s Preparing to unpack .../153-r-cran-blob_1.2.4-1_all.deb ... 1534s Unpacking r-cran-blob (1.2.4-1) ... 1534s Selecting previously unselected package r-cran-fastmap. 1534s Preparing to unpack .../154-r-cran-fastmap_1.2.0-1_s390x.deb ... 1534s Unpacking r-cran-fastmap (1.2.0-1) ... 1534s Selecting previously unselected package r-cran-cachem. 1534s Preparing to unpack .../155-r-cran-cachem_1.1.0-1_s390x.deb ... 1534s Unpacking r-cran-cachem (1.1.0-1) ... 1534s Selecting previously unselected package r-cran-memoise. 1534s Preparing to unpack .../156-r-cran-memoise_2.0.1-1_all.deb ... 1534s Unpacking r-cran-memoise (2.0.1-1) ... 1534s Selecting previously unselected package r-cran-pkgconfig. 1534s Preparing to unpack .../157-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 1534s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 1534s Selecting previously unselected package r-cran-plogr. 1534s Preparing to unpack .../158-r-cran-plogr_0.2.0-3build1_all.deb ... 1534s Unpacking r-cran-plogr (0.2.0-3build1) ... 1534s Selecting previously unselected package r-cran-cpp11. 1534s Preparing to unpack .../159-r-cran-cpp11_0.5.2-1_all.deb ... 1534s Unpacking r-cran-cpp11 (0.5.2-1) ... 1534s Selecting previously unselected package r-cran-rsqlite. 1534s Preparing to unpack .../160-r-cran-rsqlite_2.3.9-1_s390x.deb ... 1534s Unpacking r-cran-rsqlite (2.3.9-1) ... 1534s Selecting previously unselected package r-cran-curl. 1534s Preparing to unpack .../161-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 1534s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 1534s Selecting previously unselected package r-cran-jsonlite. 1534s Preparing to unpack .../162-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 1534s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1534s Selecting previously unselected package r-cran-mime. 1534s Preparing to unpack .../163-r-cran-mime_0.12-2_s390x.deb ... 1534s Unpacking r-cran-mime (0.12-2) ... 1534s Selecting previously unselected package r-cran-sys. 1534s Preparing to unpack .../164-r-cran-sys_3.4.3-1_s390x.deb ... 1534s Unpacking r-cran-sys (3.4.3-1) ... 1534s Selecting previously unselected package r-cran-askpass. 1534s Preparing to unpack .../165-r-cran-askpass_1.2.1-1_s390x.deb ... 1534s Unpacking r-cran-askpass (1.2.1-1) ... 1534s Selecting previously unselected package r-cran-openssl. 1534s Preparing to unpack .../166-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 1534s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 1534s Selecting previously unselected package r-cran-r6. 1534s Preparing to unpack .../167-r-cran-r6_2.6.1-1_all.deb ... 1534s Unpacking r-cran-r6 (2.6.1-1) ... 1534s Selecting previously unselected package r-cran-httr. 1534s Preparing to unpack .../168-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1534s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1534s Selecting previously unselected package r-cran-png. 1534s Preparing to unpack .../169-r-cran-png_0.1-8-1build2_s390x.deb ... 1534s Unpacking r-cran-png (0.1-8-1build2) ... 1534s Selecting previously unselected package r-bioc-xvector. 1534s Preparing to unpack .../170-r-bioc-xvector_0.46.0-2_s390x.deb ... 1534s Unpacking r-bioc-xvector (0.46.0-2) ... 1534s Selecting previously unselected package r-bioc-ucsc.utils. 1534s Preparing to unpack .../171-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 1534s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 1534s Selecting previously unselected package r-bioc-genomeinfodbdata. 1534s Preparing to unpack .../172-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 1534s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 1534s Selecting previously unselected package r-bioc-genomeinfodb. 1534s Preparing to unpack .../173-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 1534s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1534s Selecting previously unselected package r-cran-crayon. 1534s Preparing to unpack .../174-r-cran-crayon_1.5.3-1_all.deb ... 1534s Unpacking r-cran-crayon (1.5.3-1) ... 1534s Selecting previously unselected package r-bioc-biostrings. 1534s Preparing to unpack .../175-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 1534s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 1534s Selecting previously unselected package r-bioc-keggrest. 1534s Preparing to unpack .../176-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 1534s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 1534s Selecting previously unselected package r-bioc-annotationdbi. 1534s Preparing to unpack .../177-r-bioc-annotationdbi_1.68.0-2_all.deb ... 1534s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 1534s Selecting previously unselected package r-cran-xml. 1534s Preparing to unpack .../178-r-cran-xml_3.99-0.18-1_s390x.deb ... 1534s Unpacking r-cran-xml (3.99-0.18-1) ... 1534s Selecting previously unselected package r-cran-xtable. 1534s Preparing to unpack .../179-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1534s Unpacking r-cran-xtable (1:1.8-4-2) ... 1534s Selecting previously unselected package r-bioc-annotate. 1534s Preparing to unpack .../180-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 1534s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 1534s Selecting previously unselected package r-cran-generics. 1534s Preparing to unpack .../181-r-cran-generics_0.1.3-1_all.deb ... 1534s Unpacking r-cran-generics (0.1.3-1) ... 1534s Selecting previously unselected package r-cran-magrittr. 1534s Preparing to unpack .../182-r-cran-magrittr_2.0.3-1_s390x.deb ... 1534s Unpacking r-cran-magrittr (2.0.3-1) ... 1534s Selecting previously unselected package r-cran-utf8. 1534s Preparing to unpack .../183-r-cran-utf8_1.2.4-1_s390x.deb ... 1534s Unpacking r-cran-utf8 (1.2.4-1) ... 1534s Selecting previously unselected package r-cran-pillar. 1534s Preparing to unpack .../184-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 1534s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 1534s Selecting previously unselected package r-cran-fansi. 1534s Preparing to unpack .../185-r-cran-fansi_1.0.5-1_s390x.deb ... 1534s Unpacking r-cran-fansi (1.0.5-1) ... 1534s Selecting previously unselected package r-cran-tibble. 1534s Preparing to unpack .../186-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ... 1534s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 1534s Selecting previously unselected package r-cran-withr. 1534s Preparing to unpack .../187-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1534s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1534s Selecting previously unselected package r-cran-tidyselect. 1534s Preparing to unpack .../188-r-cran-tidyselect_1.2.1+dfsg-1_s390x.deb ... 1534s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 1534s Selecting previously unselected package r-cran-dplyr. 1534s Preparing to unpack .../189-r-cran-dplyr_1.1.4-4_s390x.deb ... 1534s Unpacking r-cran-dplyr (1.1.4-4) ... 1534s Selecting previously unselected package r-cran-purrr. 1534s Preparing to unpack .../190-r-cran-purrr_1.0.4-1_s390x.deb ... 1534s Unpacking r-cran-purrr (1.0.4-1) ... 1535s Selecting previously unselected package r-cran-stringi. 1535s Preparing to unpack .../191-r-cran-stringi_1.8.4-1build1_s390x.deb ... 1535s Unpacking r-cran-stringi (1.8.4-1build1) ... 1535s Selecting previously unselected package r-cran-stringr. 1535s Preparing to unpack .../192-r-cran-stringr_1.5.1-1_all.deb ... 1535s Unpacking r-cran-stringr (1.5.1-1) ... 1535s Selecting previously unselected package r-cran-tidyr. 1535s Preparing to unpack .../193-r-cran-tidyr_1.3.1-1_s390x.deb ... 1535s Unpacking r-cran-tidyr (1.3.1-1) ... 1535s Selecting previously unselected package r-cran-dbplyr. 1535s Preparing to unpack .../194-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 1535s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 1535s Selecting previously unselected package r-cran-filelock. 1535s Preparing to unpack .../195-r-cran-filelock_1.0.3-1_s390x.deb ... 1535s Unpacking r-cran-filelock (1.0.3-1) ... 1535s Selecting previously unselected package r-bioc-biocfilecache. 1535s Preparing to unpack .../196-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 1535s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 1535s Selecting previously unselected package r-cran-base64enc. 1535s Preparing to unpack .../197-r-cran-base64enc_0.1-3-3_s390x.deb ... 1535s Unpacking r-cran-base64enc (0.1-3-3) ... 1535s Selecting previously unselected package r-cran-digest. 1535s Preparing to unpack .../198-r-cran-digest_0.6.37-1_s390x.deb ... 1535s Unpacking r-cran-digest (0.6.37-1) ... 1535s Selecting previously unselected package r-cran-htmltools. 1535s Preparing to unpack .../199-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 1535s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1535s Selecting previously unselected package r-cran-evaluate. 1535s Preparing to unpack .../200-r-cran-evaluate_1.0.3-1_all.deb ... 1535s Unpacking r-cran-evaluate (1.0.3-1) ... 1535s Selecting previously unselected package r-cran-xfun. 1535s Preparing to unpack .../201-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 1535s Unpacking r-cran-xfun (0.51+dfsg-1) ... 1535s Selecting previously unselected package r-cran-highr. 1535s Preparing to unpack .../202-r-cran-highr_0.11+dfsg-1_all.deb ... 1535s Unpacking r-cran-highr (0.11+dfsg-1) ... 1535s Selecting previously unselected package r-cran-yaml. 1535s Preparing to unpack .../203-r-cran-yaml_2.3.10-1_s390x.deb ... 1535s Unpacking r-cran-yaml (2.3.10-1) ... 1535s Selecting previously unselected package libjs-mathjax. 1535s Preparing to unpack .../204-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1535s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1535s Selecting previously unselected package r-cran-knitr. 1535s Preparing to unpack .../205-r-cran-knitr_1.49+dfsg-1_all.deb ... 1535s Unpacking r-cran-knitr (1.49+dfsg-1) ... 1535s Selecting previously unselected package r-cran-jquerylib. 1535s Preparing to unpack .../206-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1535s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1535s Selecting previously unselected package r-cran-fs. 1535s Preparing to unpack .../207-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 1535s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1535s Selecting previously unselected package r-cran-rappdirs. 1535s Preparing to unpack .../208-r-cran-rappdirs_0.3.3-1_s390x.deb ... 1535s Unpacking r-cran-rappdirs (0.3.3-1) ... 1535s Selecting previously unselected package r-cran-sass. 1535s Preparing to unpack .../209-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 1535s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1535s Selecting previously unselected package r-cran-bslib. 1535s Preparing to unpack .../210-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 1535s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 1535s Selecting previously unselected package r-cran-fontawesome. 1535s Preparing to unpack .../211-r-cran-fontawesome_0.5.3-1_all.deb ... 1535s Unpacking r-cran-fontawesome (0.5.3-1) ... 1535s Selecting previously unselected package r-cran-tinytex. 1535s Preparing to unpack .../212-r-cran-tinytex_0.56-1_all.deb ... 1535s Unpacking r-cran-tinytex (0.56-1) ... 1535s Selecting previously unselected package libjs-modernizr. 1535s Preparing to unpack .../213-libjs-modernizr_3.13.0-0.1_all.deb ... 1535s Unpacking libjs-modernizr (3.13.0-0.1) ... 1535s Selecting previously unselected package r-cran-pkgkitten. 1535s Preparing to unpack .../214-r-cran-pkgkitten_0.2.4-1_all.deb ... 1535s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1535s Selecting previously unselected package r-cran-rcpp. 1535s Preparing to unpack .../215-r-cran-rcpp_1.0.14-1_s390x.deb ... 1535s Unpacking r-cran-rcpp (1.0.14-1) ... 1535s Selecting previously unselected package r-cran-later. 1535s Preparing to unpack .../216-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 1535s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1535s Selecting previously unselected package r-cran-promises. 1535s Preparing to unpack .../217-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 1535s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1536s Selecting previously unselected package r-cran-httpuv. 1536s Preparing to unpack .../218-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 1536s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1536s Selecting previously unselected package r-cran-sourcetools. 1536s Preparing to unpack .../219-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 1536s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1536s Selecting previously unselected package r-cran-commonmark. 1536s Preparing to unpack .../220-r-cran-commonmark_1.9.2-2_s390x.deb ... 1536s Unpacking r-cran-commonmark (1.9.2-2) ... 1536s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1536s Preparing to unpack .../221-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1536s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1536s Selecting previously unselected package r-cran-shiny. 1536s Preparing to unpack .../222-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1536s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1536s Selecting previously unselected package r-cran-rmarkdown. 1536s Preparing to unpack .../223-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 1536s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 1536s Selecting previously unselected package r-cran-bookdown. 1536s Preparing to unpack .../224-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1536s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1536s Selecting previously unselected package r-cran-biocmanager. 1536s Preparing to unpack .../225-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1536s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1536s Selecting previously unselected package tex-common. 1536s Preparing to unpack .../226-tex-common_6.19_all.deb ... 1536s Unpacking tex-common (6.19) ... 1536s Selecting previously unselected package t1utils. 1536s Preparing to unpack .../227-t1utils_1.41-4build3_s390x.deb ... 1536s Unpacking t1utils (1.41-4build3) ... 1536s Selecting previously unselected package texlive-binaries. 1536s Preparing to unpack .../228-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ... 1536s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 1536s Selecting previously unselected package texlive-base. 1536s Preparing to unpack .../229-texlive-base_2024.20250114-1_all.deb ... 1536s Unpacking texlive-base (2024.20250114-1) ... 1537s Selecting previously unselected package texlive-latex-base. 1537s Preparing to unpack .../230-texlive-latex-base_2024.20250114-1_all.deb ... 1537s Unpacking texlive-latex-base (2024.20250114-1) ... 1537s Selecting previously unselected package texlive-bibtex-extra. 1537s Preparing to unpack .../231-texlive-bibtex-extra_2024.20250114-1_all.deb ... 1537s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 1540s Selecting previously unselected package r-bioc-biocversion. 1540s Preparing to unpack .../232-r-bioc-biocversion_3.20.0-2_all.deb ... 1540s Unpacking r-bioc-biocversion (3.20.0-2) ... 1540s Selecting previously unselected package r-bioc-biocstyle. 1540s Preparing to unpack .../233-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 1540s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 1540s Selecting previously unselected package r-cran-hms. 1540s Preparing to unpack .../234-r-cran-hms_1.1.3-1_all.deb ... 1540s Unpacking r-cran-hms (1.1.3-1) ... 1540s Selecting previously unselected package r-cran-prettyunits. 1540s Preparing to unpack .../235-r-cran-prettyunits_1.2.0-1_all.deb ... 1540s Unpacking r-cran-prettyunits (1.2.0-1) ... 1540s Selecting previously unselected package r-cran-progress. 1540s Preparing to unpack .../236-r-cran-progress_1.2.3-1_all.deb ... 1540s Unpacking r-cran-progress (1.2.3-1) ... 1540s Selecting previously unselected package r-cran-httr2. 1540s Preparing to unpack .../237-r-cran-httr2_1.1.1-1_all.deb ... 1540s Unpacking r-cran-httr2 (1.1.1-1) ... 1540s Selecting previously unselected package r-cran-xml2. 1540s Preparing to unpack .../238-r-cran-xml2_1.3.7-1_s390x.deb ... 1540s Unpacking r-cran-xml2 (1.3.7-1) ... 1540s Selecting previously unselected package r-bioc-biomart. 1540s Preparing to unpack .../239-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 1540s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 1540s Selecting previously unselected package r-cran-lattice. 1540s Preparing to unpack .../240-r-cran-lattice_0.22-6-1_s390x.deb ... 1540s Unpacking r-cran-lattice (0.22-6-1) ... 1540s Selecting previously unselected package r-cran-matrix. 1540s Preparing to unpack .../241-r-cran-matrix_1.7-3-1_s390x.deb ... 1540s Unpacking r-cran-matrix (1.7-3-1) ... 1540s Selecting previously unselected package r-cran-matrixstats. 1540s Preparing to unpack .../242-r-cran-matrixstats_1.5.0-1_s390x.deb ... 1540s Unpacking r-cran-matrixstats (1.5.0-1) ... 1540s Selecting previously unselected package r-bioc-matrixgenerics. 1540s Preparing to unpack .../243-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 1540s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 1540s Selecting previously unselected package r-cran-abind. 1540s Preparing to unpack .../244-r-cran-abind_1.4-8-1_all.deb ... 1540s Unpacking r-cran-abind (1.4-8-1) ... 1540s Selecting previously unselected package r-bioc-s4arrays. 1540s Preparing to unpack .../245-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ... 1540s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 1540s Selecting previously unselected package r-bioc-sparsearray. 1540s Preparing to unpack .../246-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ... 1540s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 1540s Selecting previously unselected package r-bioc-delayedarray. 1540s Preparing to unpack .../247-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ... 1540s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 1540s Selecting previously unselected package r-cran-survival. 1540s Preparing to unpack .../248-r-cran-survival_3.8-3-1_s390x.deb ... 1540s Unpacking r-cran-survival (3.8-3-1) ... 1540s Selecting previously unselected package r-bioc-genefilter. 1540s Preparing to unpack .../249-r-bioc-genefilter_1.88.0-2_s390x.deb ... 1540s Unpacking r-bioc-genefilter (1.88.0-2) ... 1541s Selecting previously unselected package r-bioc-genomicranges. 1541s Preparing to unpack .../250-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ... 1541s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 1541s Selecting previously unselected package r-cran-statmod. 1541s Preparing to unpack .../251-r-cran-statmod_1.5.0-1_s390x.deb ... 1541s Unpacking r-cran-statmod (1.5.0-1) ... 1541s Selecting previously unselected package r-bioc-limma. 1541s Preparing to unpack .../252-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ... 1541s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 1541s Selecting previously unselected package r-bioc-summarizedexperiment. 1541s Preparing to unpack .../253-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 1541s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1541s Selecting previously unselected package r-cran-codetools. 1541s Preparing to unpack .../254-r-cran-codetools_0.2-20-1_all.deb ... 1541s Unpacking r-cran-codetools (0.2-20-1) ... 1541s Selecting previously unselected package r-cran-iterators. 1541s Preparing to unpack .../255-r-cran-iterators_1.0.14-1_all.deb ... 1541s Unpacking r-cran-iterators (1.0.14-1) ... 1541s Selecting previously unselected package r-cran-foreach. 1541s Preparing to unpack .../256-r-cran-foreach_1.5.2-1_all.deb ... 1541s Unpacking r-cran-foreach (1.5.2-1) ... 1541s Selecting previously unselected package r-cran-ff. 1541s Preparing to unpack .../257-r-cran-ff_4.5.2+ds-1_s390x.deb ... 1541s Unpacking r-cran-ff (4.5.2+ds-1) ... 1541s Selecting previously unselected package r-bioc-oligoclasses. 1541s Preparing to unpack .../258-r-bioc-oligoclasses_1.68.0-2_all.deb ... 1541s Unpacking r-bioc-oligoclasses (1.68.0-2) ... 1541s Selecting previously unselected package r-bioc-preprocesscore. 1541s Preparing to unpack .../259-r-bioc-preprocesscore_1.68.0+ds-2_s390x.deb ... 1541s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 1541s Selecting previously unselected package r-bioc-oligo. 1541s Preparing to unpack .../260-r-bioc-oligo_1.70.0+ds-2_s390x.deb ... 1541s Unpacking r-bioc-oligo (1.70.0+ds-2) ... 1541s Selecting previously unselected package r-cran-bitops. 1541s Preparing to unpack .../261-r-cran-bitops_1.0-9-1_s390x.deb ... 1541s Unpacking r-cran-bitops (1.0-9-1) ... 1541s Selecting previously unselected package r-cran-rcolorbrewer. 1541s Preparing to unpack .../262-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 1541s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 1541s Selecting previously unselected package r-cran-rcurl. 1541s Preparing to unpack .../263-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 1541s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 1541s Selecting previously unselected package r-cran-runit. 1541s Preparing to unpack .../264-r-cran-runit_0.4.33-1_all.deb ... 1541s Unpacking r-cran-runit (0.4.33-1) ... 1541s Setting up libjs-json (0~20221030+~1.0.8-1) ... 1541s Setting up javascript-common (12) ... 1541s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 1541s Setting up libpixman-1-0:s390x (0.44.0-3) ... 1541s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 1541s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 1541s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 1541s Setting up libxpm4:s390x (1:3.5.17-1build2) ... 1541s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 1541s Setting up libxi6:s390x (2:1.8.2-1) ... 1541s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 1541s Setting up libdatrie1:s390x (0.2.13-3build1) ... 1541s Setting up libjs-popper.js (1.16.1+ds-6) ... 1541s Setting up libxcb-render0:s390x (1.17.0-2) ... 1541s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 1541s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1541s Setting up libjs-lunr (2.3.9~dfsg-2) ... 1541s Setting up unzip (6.0-28ubuntu6) ... 1541s Setting up liblatex-tounicode-perl (0.55-1) ... 1541s Setting up x11-common (1:7.7+23ubuntu3) ... 1541s Setting up node-html5shiv (3.7.3+dfsg-5) ... 1541s Setting up libdeflate0:s390x (1.23-1) ... 1541s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 1541s Setting up libxcb-shm0:s390x (1.17.0-2) ... 1541s Setting up libreadline-dev:s390x (8.2-6) ... 1541s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 1541s Setting up libjs-modernizr (3.13.0-0.1) ... 1541s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 1541s Setting up libpcre2-16-0:s390x (10.45-1) ... 1541s Setting up libjs-es5-shim (4.6.7-2) ... 1541s Setting up tex-common (6.19) ... 1541s update-language: texlive-base not installed and configured, doing nothing! 1541s Setting up libio-string-perl (1.08-4) ... 1541s Setting up zip (3.0-14ubuntu2) ... 1541s Setting up libpcre2-32-0:s390x (10.45-1) ... 1541s Setting up libblas3:s390x (3.12.1-2) ... 1541s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 1541s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 1541s Setting up libpkgconf3:s390x (1.8.1-4) ... 1541s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 1541s 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fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1541s Setting up xdg-utils (1.2.1-2ubuntu1) ... 1541s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 1541s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 1541s Setting up libblas-dev:s390x (3.12.1-2) ... 1541s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 1541s Setting up dctrl-tools (2.24-3build3) ... 1541s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 1541s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 1541s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ... 1541s Setting up libbz2-dev:s390x (1.0.8-6) ... 1541s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 1541s Setting up libpotrace0:s390x (1.16-2build1) ... 1541s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 1541s Setting up libice6:s390x (2:1.1.1-1) ... 1541s Setting up 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update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 1541s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 1541s Setting up cpp-14 (14.2.0-17ubuntu3) ... 1541s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 1541s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 1542s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 1542s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 1542s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 1542s Setting up libsm6:s390x (2:1.2.4-1) ... 1542s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 1542s Setting up fontconfig (2.15.0-2ubuntu1) ... 1544s Regenerating fonts cache... done. 1544s Setting up libxft2:s390x (2.3.6-1build1) ... 1544s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 1544s Setting up libtk8.6:s390x (8.6.16-1) ... 1544s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 1544s 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r-cran-lattice (0.22-6-1) ... 1544s Setting up r-cran-xml (3.99-0.18-1) ... 1544s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ... 1544s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 1544s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 1544s Setting up r-cran-statmod (1.5.0-1) ... 1544s Setting up r-cran-commonmark (1.9.2-2) ... 1544s Setting up g++-14 (14.2.0-17ubuntu3) ... 1544s Setting up r-cran-r6 (2.6.1-1) ... 1544s Setting up r-cran-pkgkitten (0.2.4-1) ... 1544s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 1544s Setting up texlive-base (2024.20250114-1) ... 1544s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 1544s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 1544s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 1545s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 1545s Setting up r-cran-magrittr (2.0.3-1) ... 1545s Setting up r-cran-rappdirs (0.3.3-1) ... 1545s Setting up r-cran-filelock (1.0.3-1) ... 1545s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 1545s Setting up r-cran-littler (0.3.20-2) ... 1545s Setting up r-cran-fs (1.6.5+dfsg-1) ... 1545s Setting up r-cran-rcpp (1.0.14-1) ... 1545s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 1545s Setting up r-cran-codetools (0.2-20-1) ... 1545s Setting up r-bioc-biocgenerics (0.52.0-2) ... 1545s Setting up r-cran-rlang (1.1.5-1) ... 1545s Setting up r-cran-matrixstats (1.5.0-1) ... 1545s Setting up littler (0.3.20-2) ... 1545s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 1545s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 1545s Setting up r-cran-xfun (0.51+dfsg-1) ... 1545s Setting up r-cran-sys (3.4.3-1) ... 1545s Setting up r-cran-plogr (0.2.0-3build1) ... 1545s Setting up r-cran-withr 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Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 1545s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 1545s Setting up gcc (4:14.2.0-1ubuntu1) ... 1545s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1545s Setting up r-cran-askpass (1.2.1-1) ... 1545s Setting up r-cran-fastmap (1.2.0-1) ... 1545s Setting up r-cran-png (0.1-8-1build2) ... 1545s Setting up r-bioc-affxparser (1.78.0-2) ... 1545s Setting up r-bioc-biobase (2.66.0-2) ... 1545s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 1545s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 1545s Setting up r-cran-utf8 (1.2.4-1) ... 1545s Setting up r-cran-stringi (1.8.4-1build1) ... 1545s Setting up texlive-latex-base (2024.20250114-1) ... 1545s Setting up r-cran-cpp11 (0.5.2-1) ... 1545s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 1545s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 1545s Setting up r-cran-runit (0.4.33-1) ... 1545s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 1545s Setting up r-cran-later (1.4.1+dfsg-1) ... 1545s Setting up r-cran-matrix (1.7-3-1) ... 1545s Setting up r-cran-htmltools (0.5.8.1-1) ... 1545s Setting up r-cran-tinytex (0.56-1) ... 1545s Setting up r-cran-knitr (1.49+dfsg-1) ... 1545s Setting up g++ (4:14.2.0-1ubuntu1) ... 1545s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1545s Setting up r-cran-cachem (1.1.0-1) ... 1545s Setting up r-cran-sass (0.4.9+dfsg-1) ... 1545s Setting up build-essential (12.10ubuntu1) ... 1545s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 1545s Setting up r-bioc-iranges (2.40.1-2) ... 1545s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 1545s Setting up r-cran-vctrs (0.6.5-1) ... 1545s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 1545s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 1545s Setting up r-bioc-affyio (1.76.0-2) ... 1545s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 1545s Setting up r-cran-stringr (1.5.1-1) ... 1545s Setting up r-cran-xml2 (1.3.7-1) ... 1545s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 1545s Setting up r-cran-fontawesome (0.5.3-1) ... 1545s Setting up r-cran-survival (3.8-3-1) ... 1545s Setting up gfortran (4:14.2.0-1ubuntu1) ... 1545s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1545s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1545s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1545s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1545s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 1545s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 1545s Setting up texlive-bibtex-extra (2024.20250114-1) ... 1545s Setting up r-cran-httr2 (1.1.1-1) ... 1545s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1545s Setting up r-cran-hms (1.1.3-1) ... 1545s Setting up r-cran-memoise (2.0.1-1) ... 1545s Setting up r-cran-promises (1.3.2+dfsg-1) ... 1545s Setting up r-cran-purrr (1.0.4-1) ... 1545s Setting up r-cran-blob (1.2.4-1) ... 1545s Setting up r-bioc-xvector (0.46.0-2) ... 1545s Setting up r-cran-dplyr (1.1.4-4) ... 1545s Setting up r-cran-rsqlite (2.3.9-1) ... 1545s Setting up r-cran-progress (1.2.3-1) ... 1545s Setting up r-base-dev (4.4.3-1) ... 1545s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 1545s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 1545s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 1545s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1545s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 1545s Setting up r-cran-tidyr (1.3.1-1) ... 1545s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 1545s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 1545s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 1545s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 1545s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 1545s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 1545s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 1545s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 1545s Setting up r-cran-bookdown (0.42+dfsg-1) ... 1545s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1545s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 1545s Setting up r-bioc-annotationdbi (1.68.0-2) ... 1545s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 1545s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 1545s Setting up r-bioc-genefilter (1.88.0-2) ... 1545s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 1545s Setting up r-bioc-oligoclasses (1.68.0-2) ... 1545s Setting up r-bioc-oligo (1.70.0+ds-2) ... 1545s Processing triggers for man-db (2.13.0-1) ... 1547s Processing triggers for install-info (7.1.1-1) ... 1547s Processing triggers for libc-bin (2.41-1ubuntu2) ... 1547s Processing triggers for tex-common (6.19) ... 1547s Running updmap-sys. This may take some time... done. 1547s Running mktexlsr /var/lib/texmf ... done. 1547s Building format(s) --all. 1587s This may take some time... done. 1588s autopkgtest [18:12:14]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1588s autopkgtest [18:12:14]: test pkg-r-autopkgtest: [----------------------- 1588s Test: Try to load the R library oligo 1588s 1588s R version 4.4.3 (2025-02-28) -- "Trophy Case" 1588s Copyright (C) 2025 The R Foundation for Statistical Computing 1588s Platform: s390x-ibm-linux-gnu 1588s 1588s R is free software and comes with ABSOLUTELY NO WARRANTY. 1588s You are welcome to redistribute it under certain conditions. 1588s Type 'license()' or 'licence()' for distribution details. 1588s 1588s R is a collaborative project with many contributors. 1588s Type 'contributors()' for more information and 1588s 'citation()' on how to cite R or R packages in publications. 1588s 1588s Type 'demo()' for some demos, 'help()' for on-line help, or 1588s 'help.start()' for an HTML browser interface to help. 1588s Type 'q()' to quit R. 1588s 1588s > library('oligo') 1588s Loading required package: BiocGenerics 1589s 1589s Attaching package: ‘BiocGenerics’ 1589s 1589s The following objects are masked from ‘package:stats’: 1589s 1589s IQR, mad, sd, var, xtabs 1589s 1589s The following objects are masked from ‘package:base’: 1589s 1589s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1589s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1589s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1589s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1589s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 1589s table, tapply, union, unique, unsplit, which.max, which.min 1589s 1589s Loading required package: oligoClasses 1595s Welcome to oligoClasses version 1.68.0 1595s Loading required package: Biobase 1595s Welcome to Bioconductor 1595s 1595s Vignettes contain introductory material; view with 1595s 'browseVignettes()'. To cite Bioconductor, see 1595s 'citation("Biobase")', and for packages 'citation("pkgname")'. 1595s 1595s Loading required package: Biostrings 1595s Loading required package: S4Vectors 1595s Loading required package: stats4 1595s 1595s Attaching package: ‘S4Vectors’ 1595s 1595s The following object is masked from ‘package:utils’: 1595s 1595s findMatches 1595s 1595s The following objects are masked from ‘package:base’: 1595s 1595s expand.grid, I, unname 1595s 1595s Loading required package: IRanges 1595s Loading required package: XVector 1595s Loading required package: GenomeInfoDb 1595s 1595s Attaching package: ‘Biostrings’ 1595s 1595s The following object is masked from ‘package:base’: 1595s 1595s strsplit 1595s 1595s ================================================================================ 1595s Welcome to oligo version 1.70.0 1595s ================================================================================ 1595s > 1595s > 1595s Other tests are currently unsupported! 1595s They will be progressively added. 1596s autopkgtest [18:12:22]: test pkg-r-autopkgtest: -----------------------] 1596s autopkgtest [18:12:22]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1596s pkg-r-autopkgtest PASS 1597s autopkgtest [18:12:23]: @@@@@@@@@@@@@@@@@@@@ summary 1597s pkg-r-autopkgtest PASS 1614s nova [W] Using flock in prodstack6-s390x 1614s Creating nova instance adt-plucky-s390x-r-bioc-oligo-20250315-174546-juju-7f2275-prod-proposed-migration-environment-15-2c533309-ecae-411e-b21e-c208e9c0c70e from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 1614s nova [W] nova quota exceeded (attempt #0) 1614s nova [W] Timed out waiting for a4f5baea-6664-4f5b-a3a5-2fc3779a4c9b to get deleted.