0s autopkgtest [17:45:35]: starting date and time: 2025-03-15 17:45:35+0000
  0s autopkgtest [17:45:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:45:35]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mvfkewt1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-multtest --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-13.secgroup --name adt-plucky-s390x-r-bioc-multtest-20250315-174535-juju-7f2275-prod-proposed-migration-environment-20-68728c35-bf1f-42dd-9e65-16b53ea08f58 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
132s autopkgtest [17:47:47]: testbed dpkg architecture: s390x
132s autopkgtest [17:47:47]: testbed apt version: 2.9.33
132s autopkgtest [17:47:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
132s autopkgtest [17:47:47]: testbed release detected to be: None
133s autopkgtest [17:47:48]: updating testbed package index (apt update)
133s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
134s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
134s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
134s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
134s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
134s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
134s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
134s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
134s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
134s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
134s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
135s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
135s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
135s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
135s Fetched 1073 kB in 1s (743 kB/s)
136s Reading package lists...
136s Reading package lists...
136s Building dependency tree...
136s Reading state information...
136s Calculating upgrade...
136s Calculating upgrade...
136s The following packages were automatically installed and are no longer required:
136s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
136s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
136s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
136s   linux-tools-6.11.0-8-generic
136s Use 'sudo apt autoremove' to remove them.
136s The following packages will be upgraded:
136s   pinentry-curses python3-jinja2 strace
137s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
137s Need to get 652 kB of archives.
137s After this operation, 27.6 kB of additional disk space will be used.
137s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
137s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
137s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
138s Fetched 652 kB in 1s (752 kB/s)
138s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
138s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
138s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
138s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
138s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
138s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
138s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
138s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
138s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
138s Setting up strace (6.13+ds-1ubuntu1) ...
138s Processing triggers for man-db (2.13.0-1) ...
139s Reading package lists...
139s Building dependency tree...
139s Reading state information...
139s Solving dependencies...
139s The following packages will be REMOVED:
139s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
139s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
139s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
139s   linux-tools-6.11.0-8-generic*
139s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
139s After this operation, 167 MB disk space will be freed.
139s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
139s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
139s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
139s Removing libpython3.12t64:s390x (3.12.9-1) ...
139s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
139s Removing libnsl2:s390x (1.3.0-3build3) ...
139s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
139s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
139s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
141s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s Processing triggers for libc-bin (2.41-1ubuntu1) ...
141s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
141s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
141s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s autopkgtest [17:47:56]: upgrading testbed (apt dist-upgrade and autopurge)
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
141s Starting 2 pkgProblemResolver with broken count: 0
141s Done
142s Entering ResolveByKeep
142s 
142s Calculating upgrade...
142s The following packages will be upgraded:
142s   libc-bin libc-dev-bin libc6 libc6-dev locales
142s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
142s Need to get 9512 kB of archives.
142s After this operation, 8192 B of additional disk space will be used.
142s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
144s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
144s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
147s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
148s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
153s Preconfiguring packages ...
153s Fetched 9512 kB in 11s (882 kB/s)
153s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
153s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Setting up libc6:s390x (2.41-1ubuntu2) ...
153s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
153s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
153s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
153s Setting up libc-bin (2.41-1ubuntu2) ...
153s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
153s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
153s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
154s Setting up locales (2.41-1ubuntu2) ...
154s Generating locales (this might take a while)...
155s   en_US.UTF-8... done
155s Generation complete.
155s Setting up libc-dev-bin (2.41-1ubuntu2) ...
155s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
155s Processing triggers for man-db (2.13.0-1) ...
156s Processing triggers for systemd (257.3-1ubuntu3) ...
157s Reading package lists...
157s Building dependency tree...
157s Reading state information...
157s Starting pkgProblemResolver with broken count: 0
157s Starting 2 pkgProblemResolver with broken count: 0
157s Done
157s Solving dependencies...
157s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
157s autopkgtest [17:48:12]: rebooting testbed after setup commands that affected boot
177s autopkgtest [17:48:32]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
180s autopkgtest [17:48:35]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-multtest
182s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-multtest 2.62.0-2 (dsc) [2165 B]
182s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-multtest 2.62.0-2 (tar) [1296 kB]
182s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-multtest 2.62.0-2 (diff) [3780 B]
182s gpgv: Signature made Sun Jan 12 02:47:26 2025 UTC
182s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
182s gpgv:                issuer "crusoe@debian.org"
182s gpgv: Can't check signature: No public key
182s dpkg-source: warning: cannot verify inline signature for ./r-bioc-multtest_2.62.0-2.dsc: no acceptable signature found
182s autopkgtest [17:48:37]: testing package r-bioc-multtest version 2.62.0-2
183s autopkgtest [17:48:38]: build not needed
185s autopkgtest [17:48:40]: test pkg-r-autopkgtest: preparing testbed
186s Reading package lists...
186s Building dependency tree...
186s Reading state information...
186s Starting pkgProblemResolver with broken count: 0
186s Starting 2 pkgProblemResolver with broken count: 0
186s Done
186s The following NEW packages will be installed:
186s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
186s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
186s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
186s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
186s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
186s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
186s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
186s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
186s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
186s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
186s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
186s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
186s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
186s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
186s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
186s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
186s   r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-multtest
186s   r-cran-lattice r-cran-mass r-cran-matrix r-cran-snow r-cran-survival unzip
186s   x11-common xdg-utils zip zlib1g-dev
186s 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded.
186s Need to get 141 MB of archives.
186s After this operation, 388 MB of additional disk space will be used.
186s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
187s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
187s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
195s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
195s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
195s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
195s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
195s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
195s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
195s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
198s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
199s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
200s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
217s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
218s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
218s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
218s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
220s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
231s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
231s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
231s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
231s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
231s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
231s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
232s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
232s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
233s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
233s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
233s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
233s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
234s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
234s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
244s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
244s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
244s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
244s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
244s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
244s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
244s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
244s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
244s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
244s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
244s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
244s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
245s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
245s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
245s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
245s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
245s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
246s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
246s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
246s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
255s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
255s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
256s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
256s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
256s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
256s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
258s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
264s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
264s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
264s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
264s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
264s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
264s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
264s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
264s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
264s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
265s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
265s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
265s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
266s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
266s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
267s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
267s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
267s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
267s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
268s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
269s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
269s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
269s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
269s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
269s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
269s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
270s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
270s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
270s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
270s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
270s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
289s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
289s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
289s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
289s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
289s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
289s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
289s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
289s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
291s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
291s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
294s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB]
299s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
300s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-multtest s390x 2.62.0-2 [848 kB]
301s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
301s Preconfiguring packages ...
301s Fetched 141 MB in 1min 55s (1234 kB/s)
301s Selecting previously unselected package libisl23:s390x.
301s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
301s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
301s Unpacking libisl23:s390x (0.27-1) ...
301s Selecting previously unselected package libmpc3:s390x.
301s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
301s Unpacking libmpc3:s390x (1.3.1-1build2) ...
301s Selecting previously unselected package cpp-14-s390x-linux-gnu.
301s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
301s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
301s Selecting previously unselected package cpp-14.
301s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
301s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
301s Selecting previously unselected package cpp-s390x-linux-gnu.
301s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
301s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
302s Selecting previously unselected package cpp.
302s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
302s Unpacking cpp (4:14.2.0-1ubuntu1) ...
302s Selecting previously unselected package libcc1-0:s390x.
302s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
302s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
302s Selecting previously unselected package libgomp1:s390x.
302s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
302s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
302s Selecting previously unselected package libitm1:s390x.
302s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
302s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
302s Selecting previously unselected package libasan8:s390x.
302s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
302s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
302s Selecting previously unselected package libubsan1:s390x.
302s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
302s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
302s Selecting previously unselected package libgcc-14-dev:s390x.
302s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
302s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
302s Selecting previously unselected package gcc-14-s390x-linux-gnu.
302s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
302s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
302s Selecting previously unselected package gcc-14.
302s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
302s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
302s Selecting previously unselected package gcc-s390x-linux-gnu.
302s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
302s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
302s Selecting previously unselected package gcc.
302s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
302s Unpacking gcc (4:14.2.0-1ubuntu1) ...
302s Selecting previously unselected package libstdc++-14-dev:s390x.
302s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
302s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
302s Selecting previously unselected package g++-14-s390x-linux-gnu.
302s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
302s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
302s Selecting previously unselected package g++-14.
302s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
302s Unpacking g++-14 (14.2.0-17ubuntu3) ...
302s Selecting previously unselected package g++-s390x-linux-gnu.
302s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
302s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
302s Selecting previously unselected package g++.
302s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
302s Unpacking g++ (4:14.2.0-1ubuntu1) ...
302s Selecting previously unselected package build-essential.
302s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
302s Unpacking build-essential (12.10ubuntu1) ...
302s Selecting previously unselected package dctrl-tools.
302s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
302s Unpacking dctrl-tools (2.24-3build3) ...
302s Selecting previously unselected package libfreetype6:s390x.
302s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
302s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
302s Selecting previously unselected package fonts-dejavu-mono.
302s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
302s Unpacking fonts-dejavu-mono (2.37-8) ...
302s Selecting previously unselected package fonts-dejavu-core.
302s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
302s Unpacking fonts-dejavu-core (2.37-8) ...
302s Selecting previously unselected package fontconfig-config.
302s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
303s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
303s Selecting previously unselected package libfontconfig1:s390x.
303s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
303s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
303s Selecting previously unselected package fontconfig.
303s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
303s Unpacking fontconfig (2.15.0-2ubuntu1) ...
303s Selecting previously unselected package libgfortran5:s390x.
303s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
303s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
303s Selecting previously unselected package libgfortran-14-dev:s390x.
303s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
303s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
303s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
303s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
303s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
303s Selecting previously unselected package gfortran-14.
303s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
303s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
303s Selecting previously unselected package gfortran-s390x-linux-gnu.
303s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
303s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
303s Selecting previously unselected package gfortran.
303s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
303s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
303s Selecting previously unselected package icu-devtools.
303s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
303s Unpacking icu-devtools (76.1-1ubuntu2) ...
303s Selecting previously unselected package libblas3:s390x.
303s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
303s Unpacking libblas3:s390x (3.12.1-2) ...
303s Selecting previously unselected package libblas-dev:s390x.
303s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
303s Unpacking libblas-dev:s390x (3.12.1-2) ...
303s Selecting previously unselected package libbz2-dev:s390x.
303s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
303s Unpacking libbz2-dev:s390x (1.0.8-6) ...
303s Selecting previously unselected package libpixman-1-0:s390x.
303s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
303s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
303s Selecting previously unselected package libxcb-render0:s390x.
303s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
303s Unpacking libxcb-render0:s390x (1.17.0-2) ...
303s Selecting previously unselected package libxcb-shm0:s390x.
303s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
303s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
303s Selecting previously unselected package libxrender1:s390x.
303s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
303s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
303s Selecting previously unselected package libcairo2:s390x.
303s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
303s Unpacking libcairo2:s390x (1.18.2-2) ...
303s Selecting previously unselected package libdatrie1:s390x.
303s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
303s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
303s Selecting previously unselected package libdeflate0:s390x.
303s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
303s Unpacking libdeflate0:s390x (1.23-1) ...
303s Selecting previously unselected package libdeflate-dev:s390x.
303s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
303s Unpacking libdeflate-dev:s390x (1.23-1) ...
303s Selecting previously unselected package libgraphite2-3:s390x.
303s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
303s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
303s Selecting previously unselected package libharfbuzz0b:s390x.
303s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
303s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
303s Selecting previously unselected package x11-common.
303s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
303s Unpacking x11-common (1:7.7+23ubuntu3) ...
303s Selecting previously unselected package libice6:s390x.
303s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
303s Unpacking libice6:s390x (2:1.1.1-1) ...
303s Selecting previously unselected package libicu-dev:s390x.
303s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
303s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
303s Selecting previously unselected package libjpeg-turbo8:s390x.
303s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
303s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
303s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
303s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
303s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
303s Selecting previously unselected package libjpeg8:s390x.
303s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
303s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
303s Selecting previously unselected package libjpeg8-dev:s390x.
303s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
303s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
303s Selecting previously unselected package libjpeg-dev:s390x.
303s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
303s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
303s Selecting previously unselected package liblapack3:s390x.
303s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
303s Unpacking liblapack3:s390x (3.12.1-2) ...
303s Selecting previously unselected package liblapack-dev:s390x.
303s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ...
303s Unpacking liblapack-dev:s390x (3.12.1-2) ...
303s Selecting previously unselected package libncurses-dev:s390x.
303s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
303s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
304s Selecting previously unselected package libthai-data.
304s Preparing to unpack .../060-libthai-data_0.1.29-2build1_all.deb ...
304s Unpacking libthai-data (0.1.29-2build1) ...
304s Selecting previously unselected package libthai0:s390x.
304s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ...
304s Unpacking libthai0:s390x (0.1.29-2build1) ...
304s Selecting previously unselected package libpango-1.0-0:s390x.
304s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
304s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
304s Selecting previously unselected package libpangoft2-1.0-0:s390x.
304s Preparing to unpack .../063-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
304s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
304s Selecting previously unselected package libpangocairo-1.0-0:s390x.
304s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
304s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
304s Selecting previously unselected package libpaper2:s390x.
304s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
304s Unpacking libpaper2:s390x (2.2.5-0.3) ...
304s Selecting previously unselected package libpaper-utils.
304s Preparing to unpack .../066-libpaper-utils_2.2.5-0.3_s390x.deb ...
304s Unpacking libpaper-utils (2.2.5-0.3) ...
304s Selecting previously unselected package libpcre2-16-0:s390x.
304s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ...
304s Unpacking libpcre2-16-0:s390x (10.45-1) ...
304s Selecting previously unselected package libpcre2-32-0:s390x.
304s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ...
304s Unpacking libpcre2-32-0:s390x (10.45-1) ...
304s Selecting previously unselected package libpcre2-posix3:s390x.
304s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ...
304s Unpacking libpcre2-posix3:s390x (10.45-1) ...
304s Selecting previously unselected package libpcre2-dev:s390x.
304s Preparing to unpack .../070-libpcre2-dev_10.45-1_s390x.deb ...
304s Unpacking libpcre2-dev:s390x (10.45-1) ...
304s Selecting previously unselected package libpkgconf3:s390x.
304s Preparing to unpack .../071-libpkgconf3_1.8.1-4_s390x.deb ...
304s Unpacking libpkgconf3:s390x (1.8.1-4) ...
304s Selecting previously unselected package zlib1g-dev:s390x.
304s Preparing to unpack .../072-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
304s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
304s Selecting previously unselected package libpng-dev:s390x.
304s Preparing to unpack .../073-libpng-dev_1.6.47-1_s390x.deb ...
304s Unpacking libpng-dev:s390x (1.6.47-1) ...
304s Selecting previously unselected package libreadline-dev:s390x.
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304s Unpacking libreadline-dev:s390x (8.2-6) ...
304s Selecting previously unselected package libsharpyuv0:s390x.
304s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ...
304s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
304s Selecting previously unselected package libsm6:s390x.
304s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ...
304s Unpacking libsm6:s390x (2:1.2.4-1) ...
304s Selecting previously unselected package libtcl8.6:s390x.
304s Preparing to unpack .../077-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
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304s Selecting previously unselected package libwebp7:s390x.
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304s Selecting previously unselected package libtiff6:s390x.
304s Preparing to unpack .../080-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
304s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
304s Selecting previously unselected package libxft2:s390x.
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304s Unpacking libxft2:s390x (2.3.6-1build1) ...
304s Selecting previously unselected package libxss1:s390x.
304s Preparing to unpack .../082-libxss1_1%3a1.2.3-1build3_s390x.deb ...
304s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
304s Selecting previously unselected package libtk8.6:s390x.
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304s Selecting previously unselected package zip.
304s Preparing to unpack .../085-zip_3.0-14ubuntu2_s390x.deb ...
304s Unpacking zip (3.0-14ubuntu2) ...
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304s Preparing to unpack .../086-unzip_6.0-28ubuntu6_s390x.deb ...
304s Unpacking unzip (6.0-28ubuntu6) ...
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304s Selecting previously unselected package liblzma-dev:s390x.
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304s Unpacking liblzma-dev:s390x (5.6.4-1) ...
304s Selecting previously unselected package pkgconf-bin.
304s Preparing to unpack .../090-pkgconf-bin_1.8.1-4_s390x.deb ...
304s Unpacking pkgconf-bin (1.8.1-4) ...
304s Selecting previously unselected package pkgconf:s390x.
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304s Unpacking pkgconf:s390x (1.8.1-4) ...
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304s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
304s Selecting previously unselected package r-base-dev.
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304s Unpacking r-base-dev (4.4.3-1) ...
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304s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
304s Selecting previously unselected package r-bioc-biocgenerics.
304s Preparing to unpack .../095-r-bioc-biocgenerics_0.52.0-2_all.deb ...
304s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
304s Selecting previously unselected package r-bioc-biobase.
304s Preparing to unpack .../096-r-bioc-biobase_2.66.0-2_s390x.deb ...
304s Unpacking r-bioc-biobase (2.66.0-2) ...
304s Selecting previously unselected package r-cran-lattice.
304s Preparing to unpack .../097-r-cran-lattice_0.22-6-1_s390x.deb ...
304s Unpacking r-cran-lattice (0.22-6-1) ...
304s Selecting previously unselected package r-cran-matrix.
304s Preparing to unpack .../098-r-cran-matrix_1.7-3-1_s390x.deb ...
304s Unpacking r-cran-matrix (1.7-3-1) ...
304s Selecting previously unselected package r-cran-survival.
304s Preparing to unpack .../099-r-cran-survival_3.8-3-1_s390x.deb ...
304s Unpacking r-cran-survival (3.8-3-1) ...
304s Selecting previously unselected package r-cran-mass.
304s Preparing to unpack .../100-r-cran-mass_7.3-64-1_s390x.deb ...
304s Unpacking r-cran-mass (7.3-64-1) ...
304s Selecting previously unselected package r-bioc-multtest.
304s Preparing to unpack .../101-r-bioc-multtest_2.62.0-2_s390x.deb ...
304s Unpacking r-bioc-multtest (2.62.0-2) ...
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304s Preparing to unpack .../102-r-cran-snow_1%3a0.4.4-2_all.deb ...
304s Unpacking r-cran-snow (1:0.4.4-2) ...
304s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
304s Setting up libpixman-1-0:s390x (0.44.0-3) ...
304s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
304s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
304s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
305s Setting up libdatrie1:s390x (0.2.13-3build1) ...
305s Setting up libxcb-render0:s390x (1.17.0-2) ...
305s Setting up unzip (6.0-28ubuntu6) ...
305s Setting up x11-common (1:7.7+23ubuntu3) ...
305s Setting up libdeflate0:s390x (1.23-1) ...
305s Setting up libxcb-shm0:s390x (1.17.0-2) ...
305s Setting up libreadline-dev:s390x (8.2-6) ...
305s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
305s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
305s Setting up libpcre2-16-0:s390x (10.45-1) ...
305s Setting up zip (3.0-14ubuntu2) ...
305s Setting up libpcre2-32-0:s390x (10.45-1) ...
305s Setting up libblas3:s390x (3.12.1-2) ...
305s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
305s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
305s Setting up libpkgconf3:s390x (1.8.1-4) ...
305s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
305s Setting up fonts-dejavu-mono (2.37-8) ...
305s Setting up libmpc3:s390x (1.3.1-1build2) ...
305s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
305s Setting up icu-devtools (76.1-1ubuntu2) ...
305s Setting up fonts-dejavu-core (2.37-8) ...
305s Setting up pkgconf-bin (1.8.1-4) ...
305s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
305s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
305s Setting up libwebp7:s390x (1.5.0-0.1) ...
305s Setting up liblzma-dev:s390x (5.6.4-1) ...
305s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
305s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
305s Setting up libpcre2-posix3:s390x (10.45-1) ...
305s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
305s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
305s Setting up libthai-data (0.1.29-2build1) ...
305s Setting up libxss1:s390x (1:1.2.3-1build3) ...
305s Setting up libpaper2:s390x (2.2.5-0.3) ...
305s Setting up libisl23:s390x (0.27-1) ...
305s Setting up libdeflate-dev:s390x (1.23-1) ...
305s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
305s Setting up xdg-utils (1.2.1-2ubuntu1) ...
305s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
305s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
305s Setting up libblas-dev:s390x (3.12.1-2) ...
305s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
305s Setting up dctrl-tools (2.24-3build3) ...
305s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
305s Setting up libbz2-dev:s390x (1.0.8-6) ...
305s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
305s Setting up libice6:s390x (2:1.1.1-1) ...
305s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
305s Setting up liblapack3:s390x (3.12.1-2) ...
305s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
305s Setting up libpcre2-dev:s390x (10.45-1) ...
305s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
305s Setting up libpng-dev:s390x (1.6.47-1) ...
305s Setting up libpaper-utils (2.2.5-0.3) ...
305s Setting up pkgconf:s390x (1.8.1-4) ...
305s Setting up libthai0:s390x (0.1.29-2build1) ...
305s Setting up liblapack-dev:s390x (3.12.1-2) ...
305s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
305s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
305s Setting up cpp-14 (14.2.0-17ubuntu3) ...
305s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
305s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
305s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
305s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
305s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
305s Setting up libsm6:s390x (2:1.2.4-1) ...
305s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
305s Setting up fontconfig (2.15.0-2ubuntu1) ...
307s Regenerating fonts cache... done.
307s Setting up libxft2:s390x (2.3.6-1build1) ...
307s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
307s Setting up libtk8.6:s390x (8.6.16-1) ...
307s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
307s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
307s Setting up libcairo2:s390x (1.18.2-2) ...
307s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
307s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
307s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
307s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
307s Setting up cpp (4:14.2.0-1ubuntu1) ...
307s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
307s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
307s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
307s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
307s Setting up gcc-14 (14.2.0-17ubuntu3) ...
307s Setting up r-base-core (4.4.3-1) ...
307s Creating config file /etc/R/Renviron with new version
307s Setting up r-cran-lattice (0.22-6-1) ...
307s Setting up g++-14 (14.2.0-17ubuntu3) ...
307s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
307s Setting up r-bioc-biocgenerics (0.52.0-2) ...
307s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
307s Setting up r-cran-mass (7.3-64-1) ...
307s Setting up r-cran-snow (1:0.4.4-2) ...
307s Setting up gcc (4:14.2.0-1ubuntu1) ...
307s Setting up r-bioc-biobase (2.66.0-2) ...
307s Setting up r-cran-matrix (1.7-3-1) ...
307s Setting up g++ (4:14.2.0-1ubuntu1) ...
307s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
307s Setting up build-essential (12.10ubuntu1) ...
307s Setting up r-cran-survival (3.8-3-1) ...
307s Setting up gfortran (4:14.2.0-1ubuntu1) ...
307s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
307s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
307s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
307s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
307s Setting up r-bioc-multtest (2.62.0-2) ...
307s Setting up r-base-dev (4.4.3-1) ...
307s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
307s Processing triggers for libc-bin (2.41-1ubuntu2) ...
307s Processing triggers for man-db (2.13.0-1) ...
309s Processing triggers for install-info (7.1.1-1) ...
310s autopkgtest [17:50:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
310s autopkgtest [17:50:45]: test pkg-r-autopkgtest: [-----------------------
310s Test: Try to load the R library multtest
310s 
310s R version 4.4.3 (2025-02-28) -- "Trophy Case"
310s Copyright (C) 2025 The R Foundation for Statistical Computing
310s Platform: s390x-ibm-linux-gnu
310s 
310s R is free software and comes with ABSOLUTELY NO WARRANTY.
310s You are welcome to redistribute it under certain conditions.
310s Type 'license()' or 'licence()' for distribution details.
310s 
310s R is a collaborative project with many contributors.
310s Type 'contributors()' for more information and
310s 'citation()' on how to cite R or R packages in publications.
310s 
310s Type 'demo()' for some demos, 'help()' for on-line help, or
310s 'help.start()' for an HTML browser interface to help.
310s Type 'q()' to quit R.
310s 
310s > library('multtest')
310s Loading required package: BiocGenerics
310s 
310s Attaching package: ‘BiocGenerics’
310s 
310s The following objects are masked from ‘package:stats’:
310s 
310s     IQR, mad, sd, var, xtabs
310s 
310s The following objects are masked from ‘package:base’:
310s 
310s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
310s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
310s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
310s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
310s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
310s     table, tapply, union, unique, unsplit, which.max, which.min
310s 
310s Loading required package: Biobase
310s Welcome to Bioconductor
310s 
310s     Vignettes contain introductory material; view with
310s     'browseVignettes()'. To cite Bioconductor, see
310s     'citation("Biobase")', and for packages 'citation("pkgname")'.
310s 
311s > 
311s > 
311s Other tests are currently unsupported!
311s They will be progressively added.
311s autopkgtest [17:50:46]: test pkg-r-autopkgtest: -----------------------]
312s pkg-r-autopkgtest    PASS
312s autopkgtest [17:50:47]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
312s autopkgtest [17:50:47]: @@@@@@@@@@@@@@@@@@@@ summary
312s pkg-r-autopkgtest    PASS
329s nova [W] Using flock in prodstack6-s390x
329s Creating nova instance adt-plucky-s390x-r-bioc-multtest-20250315-174535-juju-7f2275-prod-proposed-migration-environment-20-68728c35-bf1f-42dd-9e65-16b53ea08f58 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
329s nova [W] Timed out waiting for 20b3ca87-ef9d-4b1f-ad0c-414cbc7dac0e to get deleted.