0s autopkgtest [17:45:13]: starting date and time: 2025-03-15 17:45:13+0000
  1s autopkgtest [17:45:14]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  1s autopkgtest [17:45:14]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ksvk4r4k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-makecdfenv --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-5.secgroup --name adt-plucky-s390x-r-bioc-makecdfenv-20250315-174513-juju-7f2275-prod-proposed-migration-environment-15-8abbbbf9-20d4-49bc-8c06-0b0b6e208d39 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
133s autopkgtest [17:47:26]: testbed dpkg architecture: s390x
134s autopkgtest [17:47:27]: testbed apt version: 2.9.33
134s autopkgtest [17:47:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup
134s autopkgtest [17:47:27]: testbed release detected to be: None
135s autopkgtest [17:47:28]: updating testbed package index (apt update)
135s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
136s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
136s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
136s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
136s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
136s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
136s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
136s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
136s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
136s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
136s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
137s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
137s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
137s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
137s Fetched 1073 kB in 2s (694 kB/s)
137s Reading package lists...
138s + lsb_release --codename --short
138s + RELEASE=plucky
138s + cat
138s + [ plucky != trusty ]
138s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
138s Reading package lists...
138s Building dependency tree...
138s Reading state information...
138s Calculating upgrade...
138s Calculating upgrade...
138s The following packages were automatically installed and are no longer required:
138s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
138s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
138s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
138s   linux-tools-6.11.0-8-generic
138s Use 'sudo apt autoremove' to remove them.
138s The following packages will be upgraded:
138s   pinentry-curses python3-jinja2 strace
139s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
139s Need to get 652 kB of archives.
139s After this operation, 27.6 kB of additional disk space will be used.
139s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
139s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
139s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
140s Fetched 652 kB in 1s (643 kB/s)
140s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
140s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
140s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
140s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
140s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
140s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
140s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
141s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
141s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
141s Setting up strace (6.13+ds-1ubuntu1) ...
141s Processing triggers for man-db (2.13.0-1) ...
141s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
141s + /usr/lib/apt/apt-helper analyze-pattern ?true
141s + uname -r
141s + sed s/\./\\./g
141s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
141s + apt list ?obsolete
141s + tail -n+2
141s + cut -d/ -f1
141s + grep -v ^linux-.*6\.14\.0-10-generic.*
141s + obsolete_pkgs=linux-headers-6.11.0-8-generic
141s linux-headers-6.11.0-8
141s linux-modules-6.11.0-8-generic
141s linux-tools-6.11.0-8-generic
141s linux-tools-6.11.0-8
141s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s Solving dependencies...
141s The following packages will be REMOVED:
141s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
141s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
141s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
141s   linux-tools-6.11.0-8-generic*
142s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
142s After this operation, 167 MB disk space will be freed.
142s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
142s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
142s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
142s Removing libpython3.12t64:s390x (3.12.9-1) ...
142s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
142s Removing libnsl2:s390x (1.3.0-3build3) ...
142s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
142s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
142s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
143s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
143s Processing triggers for libc-bin (2.41-1ubuntu1) ...
143s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
143s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
143s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
143s + grep -q trusty /etc/lsb-release
143s + [ ! -d /usr/share/doc/unattended-upgrades ]
143s + [ ! -d /usr/share/doc/lxd ]
143s + [ ! -d /usr/share/doc/lxd-client ]
143s + [ ! -d /usr/share/doc/snapd ]
143s + type iptables
143s + cat
143s + chmod 755 /etc/rc.local
143s + . /etc/rc.local
143s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
143s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
143s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
143s + uname -m
143s + [ s390x = ppc64le ]
143s + [ -d /run/systemd/system ]
143s + systemd-detect-virt --quiet --vm
143s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
143s + cat
143s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
143s + echo COMPRESS=lz4
143s autopkgtest [17:47:36]: upgrading testbed (apt dist-upgrade and autopurge)
143s Reading package lists...
143s Building dependency tree...
143s Reading state information...
144s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
144s Starting 2 pkgProblemResolver with broken count: 0
144s Done
144s Entering ResolveByKeep
144s 
144s Calculating upgrade...
144s The following packages will be upgraded:
144s   libc-bin libc-dev-bin libc6 libc6-dev locales
144s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
144s Need to get 9512 kB of archives.
144s After this operation, 8192 B of additional disk space will be used.
144s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
146s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
146s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
148s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
148s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
151s Preconfiguring packages ...
151s Fetched 9512 kB in 7s (1347 kB/s)
151s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
151s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
151s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
152s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
152s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
152s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
152s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
152s Setting up libc6:s390x (2.41-1ubuntu2) ...
152s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
152s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
152s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
152s Setting up libc-bin (2.41-1ubuntu2) ...
152s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
152s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
152s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
152s Setting up locales (2.41-1ubuntu2) ...
153s Generating locales (this might take a while)...
153s   en_US.UTF-8... done
153s Generation complete.
153s Setting up libc-dev-bin (2.41-1ubuntu2) ...
153s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
154s Processing triggers for man-db (2.13.0-1) ...
154s Processing triggers for systemd (257.3-1ubuntu3) ...
155s Reading package lists...
155s Building dependency tree...
155s Reading state information...
155s Starting pkgProblemResolver with broken count: 0
155s Starting 2 pkgProblemResolver with broken count: 0
155s Done
156s Solving dependencies...
156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
156s autopkgtest [17:47:49]: rebooting testbed after setup commands that affected boot
176s autopkgtest [17:48:09]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
179s autopkgtest [17:48:12]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-makecdfenv
184s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-makecdfenv 1.82.0-2 (dsc) [2186 B]
184s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-makecdfenv 1.82.0-2 (tar) [3418 kB]
184s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-makecdfenv 1.82.0-2 (diff) [12.9 kB]
184s gpgv: Signature made Sun Jan 12 11:47:11 2025 UTC
184s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
184s gpgv:                issuer "crusoe@debian.org"
184s gpgv: Can't check signature: No public key
184s dpkg-source: warning: cannot verify inline signature for ./r-bioc-makecdfenv_1.82.0-2.dsc: no acceptable signature found
185s autopkgtest [17:48:18]: testing package r-bioc-makecdfenv version 1.82.0-2
185s autopkgtest [17:48:18]: build not needed
192s autopkgtest [17:48:25]: test pkg-r-autopkgtest: preparing testbed
193s Reading package lists...
193s Building dependency tree...
193s Reading state information...
193s Starting pkgProblemResolver with broken count: 0
193s Starting 2 pkgProblemResolver with broken count: 0
193s Done
193s The following NEW packages will be installed:
193s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
193s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
193s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
193s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
193s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
193s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
193s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
193s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
193s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
193s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
193s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
193s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
193s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
193s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
193s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
193s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
193s   r-base-core r-base-dev r-bioc-affy r-bioc-affyio r-bioc-biobase
193s   r-bioc-biocgenerics r-bioc-makecdfenv r-bioc-preprocesscore r-bioc-zlibbioc
193s   r-cran-biocmanager unzip x11-common xdg-utils zip zlib1g-dev
193s 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded.
193s Need to get 131 MB of archives.
193s After this operation, 372 MB of additional disk space will be used.
193s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
194s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
194s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
203s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
203s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
203s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
203s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
203s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
203s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
204s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
206s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
208s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
208s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
224s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
225s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
225s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
225s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
227s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
238s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
238s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
238s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
238s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
238s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
238s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
238s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
239s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
239s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
239s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
240s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
240s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
240s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
241s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
251s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
251s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
251s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
251s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
252s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
252s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
252s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
252s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
252s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
252s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
252s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
252s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
253s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
253s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
253s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
253s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
253s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
254s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
254s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
254s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
265s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
265s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
265s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
265s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
265s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
265s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
268s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
273s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
273s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
273s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
273s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
273s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
273s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
273s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
273s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
273s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
273s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
274s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
274s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
274s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
274s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
275s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
275s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
275s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
275s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
275s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
276s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
276s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
276s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
276s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
277s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
277s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
277s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
277s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
278s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
278s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
278s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
304s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
304s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
304s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
304s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
304s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
304s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
304s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
305s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
306s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
306s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affyio s390x 1.76.0-2 [98.5 kB]
306s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
307s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-preprocesscore s390x 1.68.0+ds-2 [177 kB]
307s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affy s390x 1.84.0-2 [2016 kB]
309s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-makecdfenv s390x 1.82.0-2 [3548 kB]
312s Preconfiguring packages ...
312s Fetched 131 MB in 1min 59s (1106 kB/s)
312s Selecting previously unselected package libisl23:s390x.
312s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
312s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
312s Unpacking libisl23:s390x (0.27-1) ...
313s Selecting previously unselected package libmpc3:s390x.
313s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
313s Unpacking libmpc3:s390x (1.3.1-1build2) ...
313s Selecting previously unselected package cpp-14-s390x-linux-gnu.
313s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package cpp-14.
313s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package cpp-s390x-linux-gnu.
313s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
313s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
313s Selecting previously unselected package cpp.
313s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
313s Unpacking cpp (4:14.2.0-1ubuntu1) ...
313s Selecting previously unselected package libcc1-0:s390x.
313s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
313s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
313s Selecting previously unselected package libgomp1:s390x.
313s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
313s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
313s Selecting previously unselected package libitm1:s390x.
313s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
313s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
313s Selecting previously unselected package libasan8:s390x.
313s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
313s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
313s Selecting previously unselected package libubsan1:s390x.
313s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
313s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
313s Selecting previously unselected package libgcc-14-dev:s390x.
313s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package gcc-14-s390x-linux-gnu.
313s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package gcc-14.
313s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package gcc-s390x-linux-gnu.
313s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
313s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
313s Selecting previously unselected package gcc.
313s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
313s Unpacking gcc (4:14.2.0-1ubuntu1) ...
313s Selecting previously unselected package libstdc++-14-dev:s390x.
313s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package g++-14-s390x-linux-gnu.
313s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package g++-14.
313s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
313s Unpacking g++-14 (14.2.0-17ubuntu3) ...
313s Selecting previously unselected package g++-s390x-linux-gnu.
313s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
313s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
313s Selecting previously unselected package g++.
313s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
313s Unpacking g++ (4:14.2.0-1ubuntu1) ...
313s Selecting previously unselected package build-essential.
313s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
313s Unpacking build-essential (12.10ubuntu1) ...
313s Selecting previously unselected package dctrl-tools.
313s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
313s Unpacking dctrl-tools (2.24-3build3) ...
313s Selecting previously unselected package libfreetype6:s390x.
313s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
313s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
314s Selecting previously unselected package fonts-dejavu-mono.
314s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
314s Unpacking fonts-dejavu-mono (2.37-8) ...
314s Selecting previously unselected package fonts-dejavu-core.
314s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
314s Unpacking fonts-dejavu-core (2.37-8) ...
314s Selecting previously unselected package fontconfig-config.
314s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
314s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
314s Selecting previously unselected package libfontconfig1:s390x.
314s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
314s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
314s Selecting previously unselected package fontconfig.
314s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
314s Unpacking fontconfig (2.15.0-2ubuntu1) ...
314s Selecting previously unselected package libgfortran5:s390x.
314s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
314s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
314s Selecting previously unselected package libgfortran-14-dev:s390x.
314s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
314s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
314s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
314s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
314s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
314s Selecting previously unselected package gfortran-14.
314s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
314s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
314s Selecting previously unselected package gfortran-s390x-linux-gnu.
314s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
314s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
314s Selecting previously unselected package gfortran.
314s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
314s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
314s Selecting previously unselected package icu-devtools.
314s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
314s Unpacking icu-devtools (76.1-1ubuntu2) ...
314s Selecting previously unselected package libblas3:s390x.
314s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
314s Unpacking libblas3:s390x (3.12.1-2) ...
314s Selecting previously unselected package libblas-dev:s390x.
314s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
314s Unpacking libblas-dev:s390x (3.12.1-2) ...
314s Selecting previously unselected package libbz2-dev:s390x.
314s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
314s Unpacking libbz2-dev:s390x (1.0.8-6) ...
314s Selecting previously unselected package libpixman-1-0:s390x.
314s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
314s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
314s Selecting previously unselected package libxcb-render0:s390x.
314s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
314s Unpacking libxcb-render0:s390x (1.17.0-2) ...
314s Selecting previously unselected package libxcb-shm0:s390x.
314s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
314s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
314s Selecting previously unselected package libxrender1:s390x.
314s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
314s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
314s Selecting previously unselected package libcairo2:s390x.
314s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
314s Unpacking libcairo2:s390x (1.18.2-2) ...
314s Selecting previously unselected package libdatrie1:s390x.
314s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
314s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
314s Selecting previously unselected package libdeflate0:s390x.
314s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
314s Unpacking libdeflate0:s390x (1.23-1) ...
314s Selecting previously unselected package libdeflate-dev:s390x.
314s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
314s Unpacking libdeflate-dev:s390x (1.23-1) ...
314s Selecting previously unselected package libgraphite2-3:s390x.
314s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
314s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
314s Selecting previously unselected package libharfbuzz0b:s390x.
314s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
314s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
314s Selecting previously unselected package x11-common.
314s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
314s Unpacking x11-common (1:7.7+23ubuntu3) ...
314s Selecting previously unselected package libice6:s390x.
314s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
314s Unpacking libice6:s390x (2:1.1.1-1) ...
314s Selecting previously unselected package libicu-dev:s390x.
314s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
314s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
314s Selecting previously unselected package libjpeg-turbo8:s390x.
314s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
314s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
314s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
314s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
314s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
314s Selecting previously unselected package libjpeg8:s390x.
314s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
314s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
314s Selecting previously unselected package libjpeg8-dev:s390x.
314s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
314s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
314s Selecting previously unselected package libjpeg-dev:s390x.
314s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
314s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
314s Selecting previously unselected package liblapack3:s390x.
314s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
314s Unpacking liblapack3:s390x (3.12.1-2) ...
314s Selecting previously unselected package liblapack-dev:s390x.
314s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ...
314s Unpacking liblapack-dev:s390x (3.12.1-2) ...
315s Selecting previously unselected package libncurses-dev:s390x.
315s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
315s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
315s Selecting previously unselected package libthai-data.
315s Preparing to unpack .../060-libthai-data_0.1.29-2build1_all.deb ...
315s Unpacking libthai-data (0.1.29-2build1) ...
315s Selecting previously unselected package libthai0:s390x.
315s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ...
315s Unpacking libthai0:s390x (0.1.29-2build1) ...
315s Selecting previously unselected package libpango-1.0-0:s390x.
315s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
315s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
315s Selecting previously unselected package libpangoft2-1.0-0:s390x.
315s Preparing to unpack .../063-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
315s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
315s Selecting previously unselected package libpangocairo-1.0-0:s390x.
315s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
315s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
315s Selecting previously unselected package libpaper2:s390x.
315s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
315s Unpacking libpaper2:s390x (2.2.5-0.3) ...
315s Selecting previously unselected package libpaper-utils.
315s Preparing to unpack .../066-libpaper-utils_2.2.5-0.3_s390x.deb ...
315s Unpacking libpaper-utils (2.2.5-0.3) ...
315s Selecting previously unselected package libpcre2-16-0:s390x.
315s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ...
315s Unpacking libpcre2-16-0:s390x (10.45-1) ...
315s Selecting previously unselected package libpcre2-32-0:s390x.
315s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ...
315s Unpacking libpcre2-32-0:s390x (10.45-1) ...
315s Selecting previously unselected package libpcre2-posix3:s390x.
315s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ...
315s Unpacking libpcre2-posix3:s390x (10.45-1) ...
315s Selecting previously unselected package libpcre2-dev:s390x.
315s Preparing to unpack .../070-libpcre2-dev_10.45-1_s390x.deb ...
315s Unpacking libpcre2-dev:s390x (10.45-1) ...
315s Selecting previously unselected package libpkgconf3:s390x.
315s Preparing to unpack .../071-libpkgconf3_1.8.1-4_s390x.deb ...
315s Unpacking libpkgconf3:s390x (1.8.1-4) ...
315s Selecting previously unselected package zlib1g-dev:s390x.
315s Preparing to unpack .../072-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
315s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
315s Selecting previously unselected package libpng-dev:s390x.
315s Preparing to unpack .../073-libpng-dev_1.6.47-1_s390x.deb ...
315s Unpacking libpng-dev:s390x (1.6.47-1) ...
315s Selecting previously unselected package libreadline-dev:s390x.
315s Preparing to unpack .../074-libreadline-dev_8.2-6_s390x.deb ...
315s Unpacking libreadline-dev:s390x (8.2-6) ...
315s Selecting previously unselected package libsharpyuv0:s390x.
315s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ...
315s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
315s Selecting previously unselected package libsm6:s390x.
315s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ...
315s Unpacking libsm6:s390x (2:1.2.4-1) ...
315s Selecting previously unselected package libtcl8.6:s390x.
315s Preparing to unpack .../077-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
315s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
315s Selecting previously unselected package libjbig0:s390x.
315s Preparing to unpack .../078-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
315s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
315s Selecting previously unselected package libwebp7:s390x.
315s Preparing to unpack .../079-libwebp7_1.5.0-0.1_s390x.deb ...
315s Unpacking libwebp7:s390x (1.5.0-0.1) ...
315s Selecting previously unselected package libtiff6:s390x.
315s Preparing to unpack .../080-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
315s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
315s Selecting previously unselected package libxft2:s390x.
315s Preparing to unpack .../081-libxft2_2.3.6-1build1_s390x.deb ...
315s Unpacking libxft2:s390x (2.3.6-1build1) ...
315s Selecting previously unselected package libxss1:s390x.
315s Preparing to unpack .../082-libxss1_1%3a1.2.3-1build3_s390x.deb ...
315s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
315s Selecting previously unselected package libtk8.6:s390x.
315s Preparing to unpack .../083-libtk8.6_8.6.16-1_s390x.deb ...
315s Unpacking libtk8.6:s390x (8.6.16-1) ...
315s Selecting previously unselected package libxt6t64:s390x.
315s Preparing to unpack .../084-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
315s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
315s Selecting previously unselected package zip.
315s Preparing to unpack .../085-zip_3.0-14ubuntu2_s390x.deb ...
315s Unpacking zip (3.0-14ubuntu2) ...
315s Selecting previously unselected package unzip.
315s Preparing to unpack .../086-unzip_6.0-28ubuntu6_s390x.deb ...
315s Unpacking unzip (6.0-28ubuntu6) ...
315s Selecting previously unselected package xdg-utils.
315s Preparing to unpack .../087-xdg-utils_1.2.1-2ubuntu1_all.deb ...
315s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
315s Selecting previously unselected package r-base-core.
315s Preparing to unpack .../088-r-base-core_4.4.3-1_s390x.deb ...
315s Unpacking r-base-core (4.4.3-1) ...
315s Selecting previously unselected package liblzma-dev:s390x.
315s Preparing to unpack .../089-liblzma-dev_5.6.4-1_s390x.deb ...
315s Unpacking liblzma-dev:s390x (5.6.4-1) ...
315s Selecting previously unselected package pkgconf-bin.
315s Preparing to unpack .../090-pkgconf-bin_1.8.1-4_s390x.deb ...
315s Unpacking pkgconf-bin (1.8.1-4) ...
315s Selecting previously unselected package pkgconf:s390x.
315s Preparing to unpack .../091-pkgconf_1.8.1-4_s390x.deb ...
315s Unpacking pkgconf:s390x (1.8.1-4) ...
315s Selecting previously unselected package libtirpc-dev:s390x.
315s Preparing to unpack .../092-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
315s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
315s Selecting previously unselected package r-base-dev.
315s Preparing to unpack .../093-r-base-dev_4.4.3-1_all.deb ...
315s Unpacking r-base-dev (4.4.3-1) ...
315s Selecting previously unselected package pkg-r-autopkgtest.
315s Preparing to unpack .../094-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
315s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
315s Selecting previously unselected package r-bioc-biocgenerics.
315s Preparing to unpack .../095-r-bioc-biocgenerics_0.52.0-2_all.deb ...
315s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
315s Selecting previously unselected package r-bioc-biobase.
315s Preparing to unpack .../096-r-bioc-biobase_2.66.0-2_s390x.deb ...
315s Unpacking r-bioc-biobase (2.66.0-2) ...
315s Selecting previously unselected package r-bioc-zlibbioc.
315s Preparing to unpack .../097-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
315s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
315s Selecting previously unselected package r-bioc-affyio.
315s Preparing to unpack .../098-r-bioc-affyio_1.76.0-2_s390x.deb ...
315s Unpacking r-bioc-affyio (1.76.0-2) ...
315s Selecting previously unselected package r-cran-biocmanager.
315s Preparing to unpack .../099-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
315s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
315s Selecting previously unselected package r-bioc-preprocesscore.
315s Preparing to unpack .../100-r-bioc-preprocesscore_1.68.0+ds-2_s390x.deb ...
315s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ...
315s Selecting previously unselected package r-bioc-affy.
315s Preparing to unpack .../101-r-bioc-affy_1.84.0-2_s390x.deb ...
315s Unpacking r-bioc-affy (1.84.0-2) ...
315s Selecting previously unselected package r-bioc-makecdfenv.
315s Preparing to unpack .../102-r-bioc-makecdfenv_1.82.0-2_s390x.deb ...
315s Unpacking r-bioc-makecdfenv (1.82.0-2) ...
315s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
315s Setting up libpixman-1-0:s390x (0.44.0-3) ...
315s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
315s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
315s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
315s Setting up libdatrie1:s390x (0.2.13-3build1) ...
315s Setting up libxcb-render0:s390x (1.17.0-2) ...
315s Setting up unzip (6.0-28ubuntu6) ...
315s Setting up x11-common (1:7.7+23ubuntu3) ...
316s Setting up libdeflate0:s390x (1.23-1) ...
316s Setting up libxcb-shm0:s390x (1.17.0-2) ...
316s Setting up libreadline-dev:s390x (8.2-6) ...
316s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
316s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
316s Setting up libpcre2-16-0:s390x (10.45-1) ...
316s Setting up zip (3.0-14ubuntu2) ...
316s Setting up libpcre2-32-0:s390x (10.45-1) ...
316s Setting up libblas3:s390x (3.12.1-2) ...
316s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
316s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
316s Setting up libpkgconf3:s390x (1.8.1-4) ...
316s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
316s Setting up fonts-dejavu-mono (2.37-8) ...
316s Setting up libmpc3:s390x (1.3.1-1build2) ...
316s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
316s Setting up icu-devtools (76.1-1ubuntu2) ...
316s Setting up fonts-dejavu-core (2.37-8) ...
316s Setting up pkgconf-bin (1.8.1-4) ...
316s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
316s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
316s Setting up libwebp7:s390x (1.5.0-0.1) ...
316s Setting up liblzma-dev:s390x (5.6.4-1) ...
316s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
316s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
316s Setting up libpcre2-posix3:s390x (10.45-1) ...
316s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
316s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
316s Setting up libthai-data (0.1.29-2build1) ...
316s Setting up libxss1:s390x (1:1.2.3-1build3) ...
316s Setting up libpaper2:s390x (2.2.5-0.3) ...
316s Setting up libisl23:s390x (0.27-1) ...
316s Setting up libdeflate-dev:s390x (1.23-1) ...
316s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
316s Setting up xdg-utils (1.2.1-2ubuntu1) ...
316s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
316s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
316s Setting up libblas-dev:s390x (3.12.1-2) ...
316s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
316s Setting up dctrl-tools (2.24-3build3) ...
316s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
316s Setting up libbz2-dev:s390x (1.0.8-6) ...
316s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
316s Setting up libice6:s390x (2:1.1.1-1) ...
316s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
316s Setting up liblapack3:s390x (3.12.1-2) ...
316s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
316s Setting up libpcre2-dev:s390x (10.45-1) ...
316s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
316s Setting up libpng-dev:s390x (1.6.47-1) ...
316s Setting up libpaper-utils (2.2.5-0.3) ...
316s Setting up pkgconf:s390x (1.8.1-4) ...
316s Setting up libthai0:s390x (0.1.29-2build1) ...
316s Setting up liblapack-dev:s390x (3.12.1-2) ...
316s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
316s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
316s Setting up cpp-14 (14.2.0-17ubuntu3) ...
316s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
316s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
316s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
316s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
316s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
316s Setting up libsm6:s390x (2:1.2.4-1) ...
316s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
316s Setting up fontconfig (2.15.0-2ubuntu1) ...
318s Regenerating fonts cache... done.
318s Setting up libxft2:s390x (2.3.6-1build1) ...
318s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
318s Setting up libtk8.6:s390x (8.6.16-1) ...
318s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
318s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
318s Setting up libcairo2:s390x (1.18.2-2) ...
318s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
318s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
318s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
318s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
318s Setting up cpp (4:14.2.0-1ubuntu1) ...
318s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
318s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
318s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
318s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
318s Setting up gcc-14 (14.2.0-17ubuntu3) ...
318s Setting up r-base-core (4.4.3-1) ...
318s Creating config file /etc/R/Renviron with new version
318s Setting up g++-14 (14.2.0-17ubuntu3) ...
318s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
318s Setting up r-bioc-biocgenerics (0.52.0-2) ...
318s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
318s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
318s Setting up gcc (4:14.2.0-1ubuntu1) ...
318s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
318s Setting up r-bioc-biobase (2.66.0-2) ...
318s Setting up g++ (4:14.2.0-1ubuntu1) ...
318s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
318s Setting up build-essential (12.10ubuntu1) ...
318s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ...
318s Setting up r-bioc-affyio (1.76.0-2) ...
318s Setting up gfortran (4:14.2.0-1ubuntu1) ...
318s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
318s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
318s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
318s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
318s Setting up r-bioc-affy (1.84.0-2) ...
318s Setting up r-base-dev (4.4.3-1) ...
318s Setting up r-bioc-makecdfenv (1.82.0-2) ...
318s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
318s Processing triggers for libc-bin (2.41-1ubuntu2) ...
318s Processing triggers for man-db (2.13.0-1) ...
320s Processing triggers for install-info (7.1.1-1) ...
321s autopkgtest [17:50:34]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
321s autopkgtest [17:50:34]: test pkg-r-autopkgtest: [-----------------------
321s Test: Try to load the R library makecdfenv
321s 
321s R version 4.4.3 (2025-02-28) -- "Trophy Case"
321s Copyright (C) 2025 The R Foundation for Statistical Computing
321s Platform: s390x-ibm-linux-gnu
321s 
321s R is free software and comes with ABSOLUTELY NO WARRANTY.
321s You are welcome to redistribute it under certain conditions.
321s Type 'license()' or 'licence()' for distribution details.
321s 
321s R is a collaborative project with many contributors.
321s Type 'contributors()' for more information and
321s 'citation()' on how to cite R or R packages in publications.
321s 
321s Type 'demo()' for some demos, 'help()' for on-line help, or
321s 'help.start()' for an HTML browser interface to help.
321s Type 'q()' to quit R.
321s 
321s > library('makecdfenv')
321s Loading required package: affyio
321s > 
321s > 
321s Other tests are currently unsupported!
321s They will be progressively added.
322s autopkgtest [17:50:35]: test pkg-r-autopkgtest: -----------------------]
323s autopkgtest [17:50:36]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
323s pkg-r-autopkgtest    PASS
323s autopkgtest [17:50:36]: @@@@@@@@@@@@@@@@@@@@ summary
323s pkg-r-autopkgtest    PASS
341s nova [W] Using flock in prodstack6-s390x
341s flock: timeout while waiting to get lock
341s Creating nova instance adt-plucky-s390x-r-bioc-makecdfenv-20250315-174513-juju-7f2275-prod-proposed-migration-environment-15-8abbbbf9-20d4-49bc-8c06-0b0b6e208d39 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
341s nova [W] Timed out waiting for faa88337-dee5-4a49-a556-f89c4299c7d6 to get deleted.