0s autopkgtest [17:44:32]: starting date and time: 2025-03-15 17:44:32+0000
  1s autopkgtest [17:44:33]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  1s autopkgtest [17:44:33]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rlz79pfv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-hilbertvis --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-29.secgroup --name adt-plucky-s390x-r-bioc-hilbertvis-20250315-174432-juju-7f2275-prod-proposed-migration-environment-20-eed58c4f-74da-4298-9cdc-827f7b633eac --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
133s autopkgtest [17:46:45]: testbed dpkg architecture: s390x
133s autopkgtest [17:46:45]: testbed apt version: 2.9.33
133s autopkgtest [17:46:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
134s autopkgtest [17:46:46]: testbed release detected to be: None
134s autopkgtest [17:46:46]: updating testbed package index (apt update)
135s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
135s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
135s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
135s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
135s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
135s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
135s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
135s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
135s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
135s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
135s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
136s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
136s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
136s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
136s Fetched 1073 kB in 1s (816 kB/s)
136s Reading package lists...
137s Reading package lists...
137s Building dependency tree...
137s Reading state information...
137s Calculating upgrade...
137s Calculating upgrade...
137s The following packages were automatically installed and are no longer required:
137s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
137s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
137s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
137s   linux-tools-6.11.0-8-generic
137s Use 'sudo apt autoremove' to remove them.
137s The following packages will be upgraded:
137s   pinentry-curses python3-jinja2 strace
138s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
138s Need to get 652 kB of archives.
138s After this operation, 27.6 kB of additional disk space will be used.
138s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
138s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
138s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
138s Fetched 652 kB in 1s (790 kB/s)
139s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
139s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
139s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
139s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
139s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
139s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
139s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
139s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
139s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
139s Setting up strace (6.13+ds-1ubuntu1) ...
139s Processing triggers for man-db (2.13.0-1) ...
139s Reading package lists...
140s Building dependency tree...
140s Reading state information...
140s Solving dependencies...
140s The following packages will be REMOVED:
140s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
140s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
140s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
140s   linux-tools-6.11.0-8-generic*
140s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
140s After this operation, 167 MB disk space will be freed.
140s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
140s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
140s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
140s Removing libpython3.12t64:s390x (3.12.9-1) ...
140s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
140s Removing libnsl2:s390x (1.3.0-3build3) ...
140s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
140s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
140s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
141s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s Processing triggers for libc-bin (2.41-1ubuntu1) ...
141s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
141s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
141s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s autopkgtest [17:46:53]: upgrading testbed (apt dist-upgrade and autopurge)
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
142s Entering ResolveByKeep
142s 
142s Calculating upgrade...
142s The following packages will be upgraded:
142s   libc-bin libc-dev-bin libc6 libc6-dev locales
142s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
142s Need to get 9512 kB of archives.
142s After this operation, 8192 B of additional disk space will be used.
142s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
144s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
144s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
146s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
151s Preconfiguring packages ...
151s Fetched 9512 kB in 9s (1115 kB/s)
151s (Reading database ... 
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(Reading database ... 55%
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
151s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
151s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
151s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
151s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
151s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
151s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
151s Setting up libc6:s390x (2.41-1ubuntu2) ...
151s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
151s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
151s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
151s Setting up libc-bin (2.41-1ubuntu2) ...
151s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
151s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
151s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
151s Setting up locales (2.41-1ubuntu2) ...
152s Generating locales (this might take a while)...
153s   en_US.UTF-8... done
153s Generation complete.
153s Setting up libc-dev-bin (2.41-1ubuntu2) ...
153s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
153s Processing triggers for man-db (2.13.0-1) ...
153s Processing triggers for systemd (257.3-1ubuntu3) ...
156s Reading package lists...autopkgtest [17:47:07]: rebooting testbed after setup commands that affected boot
156s 
156s Building dependency tree...
156s Reading state information...
156s Starting pkgProblemResolver with broken count: 0
156s Starting 2 pkgProblemResolver with broken count: 0
156s Done
156s Solving dependencies...
156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
175s autopkgtest [17:47:27]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
177s autopkgtest [17:47:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-hilbertvis
180s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hilbertvis 1.64.0-2 (dsc) [2175 B]
180s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hilbertvis 1.64.0-2 (tar) [1266 kB]
180s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hilbertvis 1.64.0-2 (diff) [4676 B]
180s gpgv: Signature made Sat Jan 11 16:45:50 2025 UTC
180s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
180s gpgv:                issuer "crusoe@debian.org"
180s gpgv: Can't check signature: No public key
180s dpkg-source: warning: cannot verify inline signature for ./r-bioc-hilbertvis_1.64.0-2.dsc: no acceptable signature found
180s autopkgtest [17:47:32]: testing package r-bioc-hilbertvis version 1.64.0-2
180s autopkgtest [17:47:32]: build not needed
184s autopkgtest [17:47:36]: test pkg-r-autopkgtest: preparing testbed
184s Reading package lists...
184s Building dependency tree...
184s Reading state information...
184s Starting pkgProblemResolver with broken count: 0
184s Starting 2 pkgProblemResolver with broken count: 0
184s Done
185s The following NEW packages will be installed:
185s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
185s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
185s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
185s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
185s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
185s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
185s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
185s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
185s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
185s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
185s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
185s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
185s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
185s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
185s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
185s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
185s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-hilbertvis r-bioc-iranges
185s   r-bioc-s4vectors r-cran-lattice unzip x11-common xdg-utils zip zlib1g-dev
185s 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
185s Need to get 130 MB of archives.
185s After this operation, 371 MB of additional disk space will be used.
185s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
185s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
186s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
192s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
192s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
192s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
192s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
192s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
192s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
192s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
194s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
195s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
196s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
214s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
214s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
214s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
214s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
217s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
229s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
229s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
229s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
229s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
229s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
229s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
229s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
230s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
231s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
231s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
231s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
231s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
232s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
233s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
243s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
243s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
243s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
243s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
243s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
243s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
243s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
243s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
243s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
243s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
243s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
243s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
244s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
244s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
244s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
244s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
244s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
245s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
245s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
245s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
256s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
256s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
256s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
256s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
256s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
256s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
258s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
264s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
264s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
264s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
264s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
264s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
264s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
264s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
264s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
264s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
265s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
265s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
265s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
266s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
266s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
266s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
267s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
267s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
267s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
267s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
268s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
268s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
268s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
268s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
268s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
268s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
269s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
269s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
270s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
270s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
270s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
293s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
293s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
293s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
293s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
293s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
293s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
293s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
294s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
294s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-hilbertvis s390x 1.64.0-2 [1136 kB]
295s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
296s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
298s Preconfiguring packages ...
298s Fetched 130 MB in 1min 53s (1150 kB/s)
298s Selecting previously unselected package libisl23:s390x.
298s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
298s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
298s Unpacking libisl23:s390x (0.27-1) ...
298s Selecting previously unselected package libmpc3:s390x.
298s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
298s Unpacking libmpc3:s390x (1.3.1-1build2) ...
298s Selecting previously unselected package cpp-14-s390x-linux-gnu.
298s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
298s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
298s Selecting previously unselected package cpp-14.
298s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
298s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
298s Selecting previously unselected package cpp-s390x-linux-gnu.
298s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
298s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
298s Selecting previously unselected package cpp.
298s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
298s Unpacking cpp (4:14.2.0-1ubuntu1) ...
298s Selecting previously unselected package libcc1-0:s390x.
298s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
298s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
298s Selecting previously unselected package libgomp1:s390x.
298s Preparing to unpack .../07-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
298s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
298s Selecting previously unselected package libitm1:s390x.
298s Preparing to unpack .../08-libitm1_15-20250222-0ubuntu1_s390x.deb ...
298s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
298s Selecting previously unselected package libasan8:s390x.
298s Preparing to unpack .../09-libasan8_15-20250222-0ubuntu1_s390x.deb ...
298s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
298s Selecting previously unselected package libubsan1:s390x.
298s Preparing to unpack .../10-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
298s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
298s Selecting previously unselected package libgcc-14-dev:s390x.
298s Preparing to unpack .../11-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
298s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
298s Selecting previously unselected package gcc-14-s390x-linux-gnu.
298s Preparing to unpack .../12-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
298s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package gcc-14.
299s Preparing to unpack .../13-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
299s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package gcc-s390x-linux-gnu.
299s Preparing to unpack .../14-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
299s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
299s Selecting previously unselected package gcc.
299s Preparing to unpack .../15-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
299s Unpacking gcc (4:14.2.0-1ubuntu1) ...
299s Selecting previously unselected package libstdc++-14-dev:s390x.
299s Preparing to unpack .../16-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
299s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package g++-14-s390x-linux-gnu.
299s Preparing to unpack .../17-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
299s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package g++-14.
299s Preparing to unpack .../18-g++-14_14.2.0-17ubuntu3_s390x.deb ...
299s Unpacking g++-14 (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package g++-s390x-linux-gnu.
299s Preparing to unpack .../19-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
299s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
299s Selecting previously unselected package g++.
299s Preparing to unpack .../20-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
299s Unpacking g++ (4:14.2.0-1ubuntu1) ...
299s Selecting previously unselected package build-essential.
299s Preparing to unpack .../21-build-essential_12.10ubuntu1_s390x.deb ...
299s Unpacking build-essential (12.10ubuntu1) ...
299s Selecting previously unselected package dctrl-tools.
299s Preparing to unpack .../22-dctrl-tools_2.24-3build3_s390x.deb ...
299s Unpacking dctrl-tools (2.24-3build3) ...
299s Selecting previously unselected package libfreetype6:s390x.
299s Preparing to unpack .../23-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
299s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
299s Selecting previously unselected package fonts-dejavu-mono.
299s Preparing to unpack .../24-fonts-dejavu-mono_2.37-8_all.deb ...
299s Unpacking fonts-dejavu-mono (2.37-8) ...
299s Selecting previously unselected package fonts-dejavu-core.
299s Preparing to unpack .../25-fonts-dejavu-core_2.37-8_all.deb ...
299s Unpacking fonts-dejavu-core (2.37-8) ...
299s Selecting previously unselected package fontconfig-config.
299s Preparing to unpack .../26-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
299s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
299s Selecting previously unselected package libfontconfig1:s390x.
299s Preparing to unpack .../27-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
299s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
299s Selecting previously unselected package fontconfig.
299s Preparing to unpack .../28-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
299s Unpacking fontconfig (2.15.0-2ubuntu1) ...
299s Selecting previously unselected package libgfortran5:s390x.
299s Preparing to unpack .../29-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
299s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
299s Selecting previously unselected package libgfortran-14-dev:s390x.
299s Preparing to unpack .../30-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
299s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
299s Preparing to unpack .../31-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
299s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package gfortran-14.
299s Preparing to unpack .../32-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
299s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
299s Selecting previously unselected package gfortran-s390x-linux-gnu.
299s Preparing to unpack .../33-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
299s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
299s Selecting previously unselected package gfortran.
299s Preparing to unpack .../34-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
299s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
299s Selecting previously unselected package icu-devtools.
299s Preparing to unpack .../35-icu-devtools_76.1-1ubuntu2_s390x.deb ...
299s Unpacking icu-devtools (76.1-1ubuntu2) ...
299s Selecting previously unselected package libblas3:s390x.
299s Preparing to unpack .../36-libblas3_3.12.1-2_s390x.deb ...
299s Unpacking libblas3:s390x (3.12.1-2) ...
299s Selecting previously unselected package libblas-dev:s390x.
299s Preparing to unpack .../37-libblas-dev_3.12.1-2_s390x.deb ...
299s Unpacking libblas-dev:s390x (3.12.1-2) ...
299s Selecting previously unselected package libbz2-dev:s390x.
299s Preparing to unpack .../38-libbz2-dev_1.0.8-6_s390x.deb ...
299s Unpacking libbz2-dev:s390x (1.0.8-6) ...
299s Selecting previously unselected package libpixman-1-0:s390x.
299s Preparing to unpack .../39-libpixman-1-0_0.44.0-3_s390x.deb ...
299s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
299s Selecting previously unselected package libxcb-render0:s390x.
299s Preparing to unpack .../40-libxcb-render0_1.17.0-2_s390x.deb ...
299s Unpacking libxcb-render0:s390x (1.17.0-2) ...
299s Selecting previously unselected package libxcb-shm0:s390x.
299s Preparing to unpack .../41-libxcb-shm0_1.17.0-2_s390x.deb ...
299s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
299s Selecting previously unselected package libxrender1:s390x.
299s Preparing to unpack .../42-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
299s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
299s Selecting previously unselected package libcairo2:s390x.
299s Preparing to unpack .../43-libcairo2_1.18.2-2_s390x.deb ...
299s Unpacking libcairo2:s390x (1.18.2-2) ...
299s Selecting previously unselected package libdatrie1:s390x.
299s Preparing to unpack .../44-libdatrie1_0.2.13-3build1_s390x.deb ...
299s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
299s Selecting previously unselected package libdeflate0:s390x.
299s Preparing to unpack .../45-libdeflate0_1.23-1_s390x.deb ...
299s Unpacking libdeflate0:s390x (1.23-1) ...
299s Selecting previously unselected package libdeflate-dev:s390x.
299s Preparing to unpack .../46-libdeflate-dev_1.23-1_s390x.deb ...
299s Unpacking libdeflate-dev:s390x (1.23-1) ...
299s Selecting previously unselected package libgraphite2-3:s390x.
299s Preparing to unpack .../47-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
299s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
299s Selecting previously unselected package libharfbuzz0b:s390x.
299s Preparing to unpack .../48-libharfbuzz0b_10.2.0-1_s390x.deb ...
299s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
299s Selecting previously unselected package x11-common.
299s Preparing to unpack .../49-x11-common_1%3a7.7+23ubuntu3_all.deb ...
299s Unpacking x11-common (1:7.7+23ubuntu3) ...
300s Selecting previously unselected package libice6:s390x.
300s Preparing to unpack .../50-libice6_2%3a1.1.1-1_s390x.deb ...
300s Unpacking libice6:s390x (2:1.1.1-1) ...
300s Selecting previously unselected package libicu-dev:s390x.
300s Preparing to unpack .../51-libicu-dev_76.1-1ubuntu2_s390x.deb ...
300s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
300s Selecting previously unselected package libjpeg-turbo8:s390x.
300s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
300s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
300s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
300s Preparing to unpack .../53-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
300s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
300s Selecting previously unselected package libjpeg8:s390x.
300s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_s390x.deb ...
300s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
300s Selecting previously unselected package libjpeg8-dev:s390x.
300s Preparing to unpack .../55-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
300s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
300s Selecting previously unselected package libjpeg-dev:s390x.
300s Preparing to unpack .../56-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
300s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
300s Selecting previously unselected package liblapack3:s390x.
300s Preparing to unpack .../57-liblapack3_3.12.1-2_s390x.deb ...
300s Unpacking liblapack3:s390x (3.12.1-2) ...
300s Selecting previously unselected package liblapack-dev:s390x.
300s Preparing to unpack .../58-liblapack-dev_3.12.1-2_s390x.deb ...
300s Unpacking liblapack-dev:s390x (3.12.1-2) ...
300s Selecting previously unselected package libncurses-dev:s390x.
300s Preparing to unpack .../59-libncurses-dev_6.5+20250216-2_s390x.deb ...
300s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
300s Selecting previously unselected package libthai-data.
300s Preparing to unpack .../60-libthai-data_0.1.29-2build1_all.deb ...
300s Unpacking libthai-data (0.1.29-2build1) ...
300s Selecting previously unselected package libthai0:s390x.
300s Preparing to unpack .../61-libthai0_0.1.29-2build1_s390x.deb ...
300s Unpacking libthai0:s390x (0.1.29-2build1) ...
300s Selecting previously unselected package libpango-1.0-0:s390x.
300s Preparing to unpack .../62-libpango-1.0-0_1.56.2-1_s390x.deb ...
300s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
300s Selecting previously unselected package libpangoft2-1.0-0:s390x.
300s Preparing to unpack .../63-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
300s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
300s Selecting previously unselected package libpangocairo-1.0-0:s390x.
300s Preparing to unpack .../64-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
300s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
300s Selecting previously unselected package libpaper2:s390x.
300s Preparing to unpack .../65-libpaper2_2.2.5-0.3_s390x.deb ...
300s Unpacking libpaper2:s390x (2.2.5-0.3) ...
300s Selecting previously unselected package libpaper-utils.
300s Preparing to unpack .../66-libpaper-utils_2.2.5-0.3_s390x.deb ...
300s Unpacking libpaper-utils (2.2.5-0.3) ...
300s Selecting previously unselected package libpcre2-16-0:s390x.
300s Preparing to unpack .../67-libpcre2-16-0_10.45-1_s390x.deb ...
300s Unpacking libpcre2-16-0:s390x (10.45-1) ...
300s Selecting previously unselected package libpcre2-32-0:s390x.
300s Preparing to unpack .../68-libpcre2-32-0_10.45-1_s390x.deb ...
300s Unpacking libpcre2-32-0:s390x (10.45-1) ...
300s Selecting previously unselected package libpcre2-posix3:s390x.
300s Preparing to unpack .../69-libpcre2-posix3_10.45-1_s390x.deb ...
300s Unpacking libpcre2-posix3:s390x (10.45-1) ...
300s Selecting previously unselected package libpcre2-dev:s390x.
300s Preparing to unpack .../70-libpcre2-dev_10.45-1_s390x.deb ...
300s Unpacking libpcre2-dev:s390x (10.45-1) ...
300s Selecting previously unselected package libpkgconf3:s390x.
300s Preparing to unpack .../71-libpkgconf3_1.8.1-4_s390x.deb ...
300s Unpacking libpkgconf3:s390x (1.8.1-4) ...
300s Selecting previously unselected package zlib1g-dev:s390x.
300s Preparing to unpack .../72-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
300s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
300s Selecting previously unselected package libpng-dev:s390x.
300s Preparing to unpack .../73-libpng-dev_1.6.47-1_s390x.deb ...
300s Unpacking libpng-dev:s390x (1.6.47-1) ...
300s Selecting previously unselected package libreadline-dev:s390x.
300s Preparing to unpack .../74-libreadline-dev_8.2-6_s390x.deb ...
300s Unpacking libreadline-dev:s390x (8.2-6) ...
300s Selecting previously unselected package libsharpyuv0:s390x.
300s Preparing to unpack .../75-libsharpyuv0_1.5.0-0.1_s390x.deb ...
300s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
300s Selecting previously unselected package libsm6:s390x.
300s Preparing to unpack .../76-libsm6_2%3a1.2.4-1_s390x.deb ...
300s Unpacking libsm6:s390x (2:1.2.4-1) ...
300s Selecting previously unselected package libtcl8.6:s390x.
300s Preparing to unpack .../77-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
300s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
300s Selecting previously unselected package libjbig0:s390x.
300s Preparing to unpack .../78-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
300s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
300s Selecting previously unselected package libwebp7:s390x.
300s Preparing to unpack .../79-libwebp7_1.5.0-0.1_s390x.deb ...
300s Unpacking libwebp7:s390x (1.5.0-0.1) ...
300s Selecting previously unselected package libtiff6:s390x.
300s Preparing to unpack .../80-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
300s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
300s Selecting previously unselected package libxft2:s390x.
300s Preparing to unpack .../81-libxft2_2.3.6-1build1_s390x.deb ...
300s Unpacking libxft2:s390x (2.3.6-1build1) ...
300s Selecting previously unselected package libxss1:s390x.
300s Preparing to unpack .../82-libxss1_1%3a1.2.3-1build3_s390x.deb ...
300s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
300s Selecting previously unselected package libtk8.6:s390x.
300s Preparing to unpack .../83-libtk8.6_8.6.16-1_s390x.deb ...
300s Unpacking libtk8.6:s390x (8.6.16-1) ...
300s Selecting previously unselected package libxt6t64:s390x.
300s Preparing to unpack .../84-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
300s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
300s Selecting previously unselected package zip.
300s Preparing to unpack .../85-zip_3.0-14ubuntu2_s390x.deb ...
300s Unpacking zip (3.0-14ubuntu2) ...
300s Selecting previously unselected package unzip.
300s Preparing to unpack .../86-unzip_6.0-28ubuntu6_s390x.deb ...
300s Unpacking unzip (6.0-28ubuntu6) ...
300s Selecting previously unselected package xdg-utils.
300s Preparing to unpack .../87-xdg-utils_1.2.1-2ubuntu1_all.deb ...
300s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
300s Selecting previously unselected package r-base-core.
300s Preparing to unpack .../88-r-base-core_4.4.3-1_s390x.deb ...
300s Unpacking r-base-core (4.4.3-1) ...
300s Selecting previously unselected package liblzma-dev:s390x.
300s Preparing to unpack .../89-liblzma-dev_5.6.4-1_s390x.deb ...
300s Unpacking liblzma-dev:s390x (5.6.4-1) ...
301s Selecting previously unselected package pkgconf-bin.
301s Preparing to unpack .../90-pkgconf-bin_1.8.1-4_s390x.deb ...
301s Unpacking pkgconf-bin (1.8.1-4) ...
301s Selecting previously unselected package pkgconf:s390x.
301s Preparing to unpack .../91-pkgconf_1.8.1-4_s390x.deb ...
301s Unpacking pkgconf:s390x (1.8.1-4) ...
301s Selecting previously unselected package libtirpc-dev:s390x.
301s Preparing to unpack .../92-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
301s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
301s Selecting previously unselected package r-base-dev.
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301s Unpacking r-base-dev (4.4.3-1) ...
301s Selecting previously unselected package pkg-r-autopkgtest.
301s Preparing to unpack .../94-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
301s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
301s Selecting previously unselected package r-bioc-biocgenerics.
301s Preparing to unpack .../95-r-bioc-biocgenerics_0.52.0-2_all.deb ...
301s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
301s Selecting previously unselected package r-cran-lattice.
301s Preparing to unpack .../96-r-cran-lattice_0.22-6-1_s390x.deb ...
301s Unpacking r-cran-lattice (0.22-6-1) ...
301s Selecting previously unselected package r-bioc-hilbertvis.
301s Preparing to unpack .../97-r-bioc-hilbertvis_1.64.0-2_s390x.deb ...
301s Unpacking r-bioc-hilbertvis (1.64.0-2) ...
301s Selecting previously unselected package r-bioc-s4vectors.
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301s Selecting previously unselected package r-bioc-iranges.
301s Preparing to unpack .../99-r-bioc-iranges_2.40.1-2_s390x.deb ...
301s Unpacking r-bioc-iranges (2.40.1-2) ...
301s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
301s Setting up libpixman-1-0:s390x (0.44.0-3) ...
301s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
301s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
301s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
301s Setting up libdatrie1:s390x (0.2.13-3build1) ...
301s Setting up libxcb-render0:s390x (1.17.0-2) ...
301s Setting up unzip (6.0-28ubuntu6) ...
301s Setting up x11-common (1:7.7+23ubuntu3) ...
301s Setting up libdeflate0:s390x (1.23-1) ...
301s Setting up libxcb-shm0:s390x (1.17.0-2) ...
301s Setting up libreadline-dev:s390x (8.2-6) ...
301s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
301s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
301s Setting up libpcre2-16-0:s390x (10.45-1) ...
301s Setting up zip (3.0-14ubuntu2) ...
301s Setting up libpcre2-32-0:s390x (10.45-1) ...
301s Setting up libblas3:s390x (3.12.1-2) ...
301s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
301s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
301s Setting up libpkgconf3:s390x (1.8.1-4) ...
301s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
301s Setting up fonts-dejavu-mono (2.37-8) ...
301s Setting up libmpc3:s390x (1.3.1-1build2) ...
301s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
301s Setting up icu-devtools (76.1-1ubuntu2) ...
301s Setting up fonts-dejavu-core (2.37-8) ...
301s Setting up pkgconf-bin (1.8.1-4) ...
301s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
301s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
301s Setting up libwebp7:s390x (1.5.0-0.1) ...
301s Setting up liblzma-dev:s390x (5.6.4-1) ...
301s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
301s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
301s Setting up libpcre2-posix3:s390x (10.45-1) ...
301s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
301s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
301s Setting up libthai-data (0.1.29-2build1) ...
301s Setting up libxss1:s390x (1:1.2.3-1build3) ...
301s Setting up libpaper2:s390x (2.2.5-0.3) ...
301s Setting up libisl23:s390x (0.27-1) ...
301s Setting up libdeflate-dev:s390x (1.23-1) ...
301s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
301s Setting up xdg-utils (1.2.1-2ubuntu1) ...
301s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
301s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
301s Setting up libblas-dev:s390x (3.12.1-2) ...
301s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
301s Setting up dctrl-tools (2.24-3build3) ...
301s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
301s Setting up libbz2-dev:s390x (1.0.8-6) ...
301s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
301s Setting up libice6:s390x (2:1.1.1-1) ...
301s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
301s Setting up liblapack3:s390x (3.12.1-2) ...
301s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
301s Setting up libpcre2-dev:s390x (10.45-1) ...
301s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
301s Setting up libpng-dev:s390x (1.6.47-1) ...
301s Setting up libpaper-utils (2.2.5-0.3) ...
301s Setting up pkgconf:s390x (1.8.1-4) ...
301s Setting up libthai0:s390x (0.1.29-2build1) ...
301s Setting up liblapack-dev:s390x (3.12.1-2) ...
301s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
301s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
301s Setting up cpp-14 (14.2.0-17ubuntu3) ...
301s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
301s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
301s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
301s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
301s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
301s Setting up libsm6:s390x (2:1.2.4-1) ...
301s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
301s Setting up fontconfig (2.15.0-2ubuntu1) ...
303s Regenerating fonts cache... done.
303s Setting up libxft2:s390x (2.3.6-1build1) ...
303s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
303s Setting up libtk8.6:s390x (8.6.16-1) ...
303s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
303s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
303s Setting up libcairo2:s390x (1.18.2-2) ...
303s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
303s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
303s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
303s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
303s Setting up cpp (4:14.2.0-1ubuntu1) ...
303s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
303s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
303s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
303s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
303s Setting up gcc-14 (14.2.0-17ubuntu3) ...
303s Setting up r-base-core (4.4.3-1) ...
303s Creating config file /etc/R/Renviron with new version
303s Setting up r-cran-lattice (0.22-6-1) ...
303s Setting up g++-14 (14.2.0-17ubuntu3) ...
303s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
303s Setting up r-bioc-biocgenerics (0.52.0-2) ...
303s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
303s Setting up gcc (4:14.2.0-1ubuntu1) ...
303s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
303s Setting up r-bioc-hilbertvis (1.64.0-2) ...
303s Setting up g++ (4:14.2.0-1ubuntu1) ...
303s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
303s Setting up build-essential (12.10ubuntu1) ...
303s Setting up r-bioc-iranges (2.40.1-2) ...
303s Setting up gfortran (4:14.2.0-1ubuntu1) ...
303s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
303s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
303s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
303s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
303s Setting up r-base-dev (4.4.3-1) ...
303s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
303s Processing triggers for libc-bin (2.41-1ubuntu2) ...
303s Processing triggers for man-db (2.13.0-1) ...
304s Processing triggers for install-info (7.1.1-1) ...
305s autopkgtest [17:49:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
305s autopkgtest [17:49:37]: test pkg-r-autopkgtest: [-----------------------
306s Test: Try to load the R library HilbertVis
306s 
306s R version 4.4.3 (2025-02-28) -- "Trophy Case"
306s Copyright (C) 2025 The R Foundation for Statistical Computing
306s Platform: s390x-ibm-linux-gnu
306s 
306s R is free software and comes with ABSOLUTELY NO WARRANTY.
306s You are welcome to redistribute it under certain conditions.
306s Type 'license()' or 'licence()' for distribution details.
306s 
306s R is a collaborative project with many contributors.
306s Type 'contributors()' for more information and
306s 'citation()' on how to cite R or R packages in publications.
306s 
306s Type 'demo()' for some demos, 'help()' for on-line help, or
306s 'help.start()' for an HTML browser interface to help.
306s Type 'q()' to quit R.
306s 
306s > library('HilbertVis')
306s Loading required package: grid
306s Loading required package: lattice
306s > 
306s > 
306s Other tests are currently unsupported!
306s They will be progressively added.
306s autopkgtest [17:49:38]: test pkg-r-autopkgtest: -----------------------]
306s pkg-r-autopkgtest    PASS
306s autopkgtest [17:49:38]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
307s autopkgtest [17:49:39]: @@@@@@@@@@@@@@@@@@@@ summary
307s pkg-r-autopkgtest    PASS
311s nova [W] Using flock in prodstack6-s390x
311s Creating nova instance adt-plucky-s390x-r-bioc-hilbertvis-20250315-174432-juju-7f2275-prod-proposed-migration-environment-20-eed58c4f-74da-4298-9cdc-827f7b633eac from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
311s nova [W] Timed out waiting for b34e1f1e-0b42-489d-8c79-96fb2ea8d36d to get deleted.