0s autopkgtest [17:43:57]: starting date and time: 2025-03-15 17:43:57+0000 0s autopkgtest [17:43:57]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:43:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ytvl839z/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-grohmm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-30.secgroup --name adt-plucky-s390x-r-bioc-grohmm-20250315-174356-juju-7f2275-prod-proposed-migration-environment-2-e4761eab-6ce9-4608-a6e8-f2ae3802e8e9 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 147s autopkgtest [17:46:24]: testbed dpkg architecture: s390x 147s autopkgtest [17:46:24]: testbed apt version: 2.9.33 147s autopkgtest [17:46:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 148s autopkgtest [17:46:25]: testbed release detected to be: None 148s autopkgtest [17:46:25]: updating testbed package index (apt update) 149s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 149s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 149s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 149s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 149s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 149s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 150s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 150s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 150s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 150s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 150s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 150s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 150s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 150s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 150s Fetched 1073 kB in 1s (721 kB/s) 151s Reading package lists... 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Calculating upgrade... 152s Calculating upgrade... 152s The following packages were automatically installed and are no longer required: 152s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 152s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 152s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 152s linux-tools-6.11.0-8-generic 152s Use 'sudo apt autoremove' to remove them. 152s The following packages will be upgraded: 152s pinentry-curses python3-jinja2 strace 152s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 652 kB of archives. 152s After this operation, 27.6 kB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 152s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 152s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 153s Fetched 652 kB in 1s (729 kB/s) 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 153s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 153s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 153s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 153s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 153s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 153s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 153s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 153s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 153s Setting up strace (6.13+ds-1ubuntu1) ... 153s Processing triggers for man-db (2.13.0-1) ... 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Solving dependencies... 154s The following packages will be REMOVED: 154s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 154s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 154s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 154s linux-tools-6.11.0-8-generic* 154s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 154s After this operation, 167 MB disk space will be freed. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 154s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 154s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 154s Removing libpython3.12t64:s390x (3.12.9-1) ... 154s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 154s Removing libnsl2:s390x (1.3.0-3build3) ... 154s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 154s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 154s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 155s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 155s Processing triggers for libc-bin (2.41-1ubuntu1) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 155s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 155s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 155s autopkgtest [17:46:32]: upgrading testbed (apt dist-upgrade and autopurge) 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 156s Starting 2 pkgProblemResolver with broken count: 0 156s Done 156s Entering ResolveByKeep 156s 156s Calculating upgrade... 156s The following packages will be upgraded: 156s libc-bin libc-dev-bin libc6 libc6-dev locales 156s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 9512 kB of archives. 156s After this operation, 8192 B of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 158s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 158s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 161s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 165s Preconfiguring packages ... 165s Fetched 9512 kB in 9s (1107 kB/s) 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 165s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 165s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 165s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 165s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Setting up libc6:s390x (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 166s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 166s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up libc-bin (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 166s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 166s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up locales (2.41-1ubuntu2) ... 166s Generating locales (this might take a while)... 167s en_US.UTF-8... done 167s Generation complete. 167s Setting up libc-dev-bin (2.41-1ubuntu2) ... 167s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 167s Processing triggers for man-db (2.13.0-1) ... 168s Processing triggers for systemd (257.3-1ubuntu3) ... 168s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 169s Solving dependencies... 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s autopkgtest [17:46:46]: rebooting testbed after setup commands that affected boot 188s autopkgtest [17:47:05]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 191s autopkgtest [17:47:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-grohmm 196s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-grohmm 1.40.3-2 (dsc) [2214 B] 196s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-grohmm 1.40.3-2 (tar) [4365 kB] 196s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-grohmm 1.40.3-2 (diff) [3640 B] 197s gpgv: Signature made Mon Jan 13 20:23:01 2025 UTC 197s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 197s gpgv: issuer "crusoe@debian.org" 197s gpgv: Can't check signature: No public key 197s dpkg-source: warning: cannot verify inline signature for ./r-bioc-grohmm_1.40.3-2.dsc: no acceptable signature found 197s autopkgtest [17:47:14]: testing package r-bioc-grohmm version 1.40.3-2 197s autopkgtest [17:47:14]: build not needed 199s autopkgtest [17:47:16]: test pkg-r-autopkgtest: preparing testbed 199s Reading package lists... 200s Building dependency tree... 200s Reading state information... 200s Starting pkgProblemResolver with broken count: 0 200s Starting 2 pkgProblemResolver with broken count: 0 200s Done 200s The following NEW packages will be installed: 200s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 200s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 200s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 200s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 200s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 200s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 200s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 200s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 200s libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev 200s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 200s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 200s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 200s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 200s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 200s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 200s libjs-popper.js libjs-prettify libjs-sifter.js 200s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 200s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libmpfi0 200s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 200s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 200s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 200s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 200s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 200s libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 200s libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 200s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 200s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 200s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 200s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 200s r-bioc-delayedarray r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 200s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 200s r-bioc-grohmm r-bioc-iranges r-bioc-keggrest r-bioc-limma 200s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 200s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 200s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 200s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 200s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 200s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 200s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest 200s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 200s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 200s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 200s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 200s r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix 200s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 200s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises 200s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 200s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass 200s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-sys 200s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 200s r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 200s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 200s xdg-utils zip zlib1g-dev 200s 0 upgraded, 254 newly installed, 0 to remove and 0 not upgraded. 200s Need to get 495 MB of archives. 200s After this operation, 1800 MB of additional disk space will be used. 200s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 201s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 201s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 210s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 210s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 210s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 210s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 210s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 210s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 210s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 213s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 214s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 215s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 229s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 229s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 229s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 229s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 231s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 240s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 240s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 240s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 240s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 241s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 241s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 241s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 242s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 242s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 242s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 243s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 243s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 244s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 244s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 249s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 251s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 252s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 253s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 264s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 264s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 264s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 264s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 264s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B] 264s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB] 264s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB] 264s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 264s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 264s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 265s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB] 275s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 275s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 275s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 275s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 275s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 275s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 276s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 276s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 276s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 276s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 276s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 276s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 277s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 277s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 277s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 288s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 288s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 288s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 288s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 288s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 288s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 288s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 288s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 289s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 289s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 289s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 289s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 290s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 290s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 290s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 290s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 290s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 290s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 290s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 290s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 290s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB] 290s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 292s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 298s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 298s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB] 298s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 298s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 298s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 298s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 299s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 299s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 299s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 299s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 299s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 299s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 299s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 299s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 300s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 300s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 301s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 301s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB] 301s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB] 301s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 302s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 302s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 302s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB] 302s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 303s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 303s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB] 303s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 303s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 303s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 304s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 304s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 304s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 304s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 305s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 305s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB] 305s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB] 305s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 305s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB] 305s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 305s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 305s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 305s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 333s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 333s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 333s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 333s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 333s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 333s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 333s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 379s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 379s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 379s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 379s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 379s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 379s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 379s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 380s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 382s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 384s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 386s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB] 386s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB] 387s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB] 387s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 389s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 390s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 390s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 390s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 391s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 391s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 391s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 391s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 391s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 391s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 391s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 392s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB] 393s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 393s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 393s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 393s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 393s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 393s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 394s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 394s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 394s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 394s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 394s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 395s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 395s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 408s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 412s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 412s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 427s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 427s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 432s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 432s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB] 433s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 433s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 433s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 433s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 433s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB] 433s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 433s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB] 434s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 434s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 435s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 435s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 435s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 436s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 436s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 436s Get:195 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 441s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 442s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 442s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 442s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 442s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 443s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 448s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB] 449s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB] 450s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 450s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 450s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 452s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 452s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 452s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 452s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 453s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 453s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 453s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 454s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 454s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 454s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 457s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 458s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 460s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 460s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB] 460s Get:221 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB] 460s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB] 467s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB] 486s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB] 488s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 562s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB] 562s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 562s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 564s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 568s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB] 569s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 569s Get:232 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 570s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB] 570s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB] 572s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB] 574s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 575s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB] 577s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-locfit s390x 1.5-9.12-1 [539 kB] 578s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-edger s390x 4.4.2+dfsg-1 [1125 kB] 579s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB] 581s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 582s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 582s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB] 584s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB] 588s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB] 591s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 593s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 594s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB] 594s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 594s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB] 600s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 601s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB] 602s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-grohmm s390x 1.40.3-2 [4458 kB] 608s Get:254 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB] 678s Preconfiguring packages ... 678s Fetched 495 MB in 7min 58s (1036 kB/s) 678s Selecting previously unselected package libisl23:s390x. 679s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 679s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 679s Unpacking libisl23:s390x (0.27-1) ... 679s Selecting previously unselected package libmpc3:s390x. 679s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 679s Unpacking libmpc3:s390x (1.3.1-1build2) ... 679s Selecting previously unselected package cpp-14-s390x-linux-gnu. 679s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package cpp-14. 679s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package cpp-s390x-linux-gnu. 679s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 679s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package cpp. 679s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 679s Unpacking cpp (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package libcc1-0:s390x. 679s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 679s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 679s Selecting previously unselected package libgomp1:s390x. 679s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 679s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 679s Selecting previously unselected package libitm1:s390x. 679s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ... 679s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 679s Selecting previously unselected package libasan8:s390x. 679s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ... 679s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 679s Selecting previously unselected package libubsan1:s390x. 679s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 679s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 679s Selecting previously unselected package libgcc-14-dev:s390x. 679s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package gcc-14-s390x-linux-gnu. 679s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package gcc-14. 679s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package gcc-s390x-linux-gnu. 679s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 679s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package gcc. 679s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 679s Unpacking gcc (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package libstdc++-14-dev:s390x. 679s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package g++-14-s390x-linux-gnu. 679s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package g++-14. 679s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ... 679s Unpacking g++-14 (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package g++-s390x-linux-gnu. 679s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 679s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package g++. 679s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 679s Unpacking g++ (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package build-essential. 679s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ... 679s Unpacking build-essential (12.10ubuntu1) ... 679s Selecting previously unselected package dctrl-tools. 679s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 679s Unpacking dctrl-tools (2.24-3build3) ... 679s Selecting previously unselected package libfreetype6:s390x. 679s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 679s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 679s Selecting previously unselected package fonts-dejavu-mono. 679s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 679s Unpacking fonts-dejavu-mono (2.37-8) ... 679s Selecting previously unselected package fonts-dejavu-core. 679s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 679s Unpacking fonts-dejavu-core (2.37-8) ... 679s Selecting previously unselected package fontconfig-config. 680s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 680s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 680s Selecting previously unselected package libfontconfig1:s390x. 680s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 680s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 680s Selecting previously unselected package fontconfig. 680s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 680s Unpacking fontconfig (2.15.0-2ubuntu1) ... 680s Selecting previously unselected package fonts-font-awesome. 680s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 680s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 680s Selecting previously unselected package fonts-glyphicons-halflings. 680s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 680s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 680s Selecting previously unselected package fonts-lmodern. 680s Preparing to unpack .../031-fonts-lmodern_2.005-1_all.deb ... 680s Unpacking fonts-lmodern (2.005-1) ... 680s Selecting previously unselected package fonts-mathjax. 680s Preparing to unpack .../032-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 680s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 680s Selecting previously unselected package libgfortran5:s390x. 680s Preparing to unpack .../033-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 680s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 680s Selecting previously unselected package libgfortran-14-dev:s390x. 680s Preparing to unpack .../034-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 680s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 680s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 680s Preparing to unpack .../035-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 680s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 680s Selecting previously unselected package gfortran-14. 680s Preparing to unpack .../036-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 680s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 680s Selecting previously unselected package gfortran-s390x-linux-gnu. 680s Preparing to unpack .../037-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 680s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 680s Selecting previously unselected package gfortran. 680s Preparing to unpack .../038-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 680s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 680s Selecting previously unselected package icu-devtools. 680s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_s390x.deb ... 680s Unpacking icu-devtools (76.1-1ubuntu2) ... 680s Selecting previously unselected package javascript-common. 680s Preparing to unpack .../040-javascript-common_12_all.deb ... 680s Unpacking javascript-common (12) ... 680s Selecting previously unselected package libio-string-perl. 680s Preparing to unpack .../041-libio-string-perl_1.08-4_all.deb ... 680s Unpacking libio-string-perl (1.08-4) ... 680s Selecting previously unselected package liblatex-tounicode-perl. 680s Preparing to unpack .../042-liblatex-tounicode-perl_0.55-1_all.deb ... 680s Unpacking liblatex-tounicode-perl (0.55-1) ... 680s Selecting previously unselected package libbibtex-parser-perl. 680s Preparing to unpack .../043-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 680s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 680s Selecting previously unselected package libblas3:s390x. 680s Preparing to unpack .../044-libblas3_3.12.1-2_s390x.deb ... 680s Unpacking libblas3:s390x (3.12.1-2) ... 680s Selecting previously unselected package libblas-dev:s390x. 680s Preparing to unpack .../045-libblas-dev_3.12.1-2_s390x.deb ... 680s Unpacking libblas-dev:s390x (3.12.1-2) ... 680s Selecting previously unselected package libboost1.83-dev:s390x. 680s Preparing to unpack .../046-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ... 680s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 681s Selecting previously unselected package libboost-dev:s390x. 681s Preparing to unpack .../047-libboost-dev_1.83.0.2ubuntu1_s390x.deb ... 681s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ... 681s Selecting previously unselected package libbz2-dev:s390x. 681s Preparing to unpack .../048-libbz2-dev_1.0.8-6_s390x.deb ... 681s Unpacking libbz2-dev:s390x (1.0.8-6) ... 681s Selecting previously unselected package libpixman-1-0:s390x. 681s Preparing to unpack .../049-libpixman-1-0_0.44.0-3_s390x.deb ... 681s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 681s Selecting previously unselected package libxcb-render0:s390x. 681s Preparing to unpack .../050-libxcb-render0_1.17.0-2_s390x.deb ... 681s Unpacking libxcb-render0:s390x (1.17.0-2) ... 681s Selecting previously unselected package libxcb-shm0:s390x. 681s Preparing to unpack .../051-libxcb-shm0_1.17.0-2_s390x.deb ... 681s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 681s Selecting previously unselected package libxrender1:s390x. 681s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 681s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 681s Selecting previously unselected package libcairo2:s390x. 681s Preparing to unpack .../053-libcairo2_1.18.2-2_s390x.deb ... 681s Unpacking libcairo2:s390x (1.18.2-2) ... 681s Selecting previously unselected package libdatrie1:s390x. 681s Preparing to unpack .../054-libdatrie1_0.2.13-3build1_s390x.deb ... 681s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 681s Selecting previously unselected package libdeflate0:s390x. 681s Preparing to unpack .../055-libdeflate0_1.23-1_s390x.deb ... 681s Unpacking libdeflate0:s390x (1.23-1) ... 681s Selecting previously unselected package libdeflate-dev:s390x. 681s Preparing to unpack .../056-libdeflate-dev_1.23-1_s390x.deb ... 681s Unpacking libdeflate-dev:s390x (1.23-1) ... 681s Selecting previously unselected package libgraphite2-3:s390x. 681s Preparing to unpack .../057-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 681s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 681s Selecting previously unselected package libharfbuzz0b:s390x. 681s Preparing to unpack .../058-libharfbuzz0b_10.2.0-1_s390x.deb ... 681s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 681s Selecting previously unselected package x11-common. 681s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu3_all.deb ... 681s Unpacking x11-common (1:7.7+23ubuntu3) ... 681s Selecting previously unselected package libice6:s390x. 681s Preparing to unpack .../060-libice6_2%3a1.1.1-1_s390x.deb ... 681s Unpacking libice6:s390x (2:1.1.1-1) ... 681s Selecting previously unselected package libicu-dev:s390x. 681s Preparing to unpack .../061-libicu-dev_76.1-1ubuntu2_s390x.deb ... 681s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 682s Selecting previously unselected package libjpeg-turbo8:s390x. 682s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 682s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 682s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 682s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 682s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 682s Selecting previously unselected package libjpeg8:s390x. 682s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_s390x.deb ... 682s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 682s Selecting previously unselected package libjpeg8-dev:s390x. 682s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 682s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 682s Selecting previously unselected package libjpeg-dev:s390x. 682s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 682s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 682s Selecting previously unselected package libjs-bootstrap. 682s Preparing to unpack .../067-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 682s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 682s Selecting previously unselected package libjs-popper.js. 682s Preparing to unpack .../068-libjs-popper.js_1.16.1+ds-6_all.deb ... 682s Unpacking libjs-popper.js (1.16.1+ds-6) ... 682s Selecting previously unselected package libjs-bootstrap4. 682s Preparing to unpack .../069-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 682s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 682s Selecting previously unselected package libjs-d3. 682s Preparing to unpack .../070-libjs-d3_3.5.17-4_all.deb ... 682s Unpacking libjs-d3 (3.5.17-4) ... 682s Selecting previously unselected package libjs-es5-shim. 682s Preparing to unpack .../071-libjs-es5-shim_4.6.7-2_all.deb ... 682s Unpacking libjs-es5-shim (4.6.7-2) ... 682s Selecting previously unselected package libjs-highlight.js. 682s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 682s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 682s Selecting previously unselected package libjs-jquery. 682s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 682s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 682s Selecting previously unselected package libjs-jquery-datatables. 682s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 682s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 682s Selecting previously unselected package libjs-sifter.js. 682s Preparing to unpack .../075-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 682s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 682s Selecting previously unselected package libjs-microplugin.js. 682s Preparing to unpack .../076-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 682s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 682s Selecting previously unselected package libjs-jquery-selectize.js. 682s Preparing to unpack .../077-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 682s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 682s Selecting previously unselected package libjs-jquery-ui. 682s Preparing to unpack .../078-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 682s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 682s Selecting previously unselected package libjs-json. 682s Preparing to unpack .../079-libjs-json_0~20221030+~1.0.8-1_all.deb ... 682s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 682s Selecting previously unselected package libjs-lunr. 682s Preparing to unpack .../080-libjs-lunr_2.3.9~dfsg-2_all.deb ... 682s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 682s Selecting previously unselected package libjs-prettify. 682s Preparing to unpack .../081-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 682s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 682s Selecting previously unselected package libkpathsea6:s390x. 682s Preparing to unpack .../082-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ... 682s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ... 682s Selecting previously unselected package liblapack3:s390x. 682s Preparing to unpack .../083-liblapack3_3.12.1-2_s390x.deb ... 682s Unpacking liblapack3:s390x (3.12.1-2) ... 682s Selecting previously unselected package liblapack-dev:s390x. 682s Preparing to unpack .../084-liblapack-dev_3.12.1-2_s390x.deb ... 682s Unpacking liblapack-dev:s390x (3.12.1-2) ... 682s Selecting previously unselected package liblua5.4-0:s390x. 682s Preparing to unpack .../085-liblua5.4-0_5.4.7-1_s390x.deb ... 682s Unpacking liblua5.4-0:s390x (5.4.7-1) ... 682s Selecting previously unselected package libmpfi0:s390x. 682s Preparing to unpack .../086-libmpfi0_1.5.4+ds-4_s390x.deb ... 682s Unpacking libmpfi0:s390x (1.5.4+ds-4) ... 682s Selecting previously unselected package libncurses-dev:s390x. 682s Preparing to unpack .../087-libncurses-dev_6.5+20250216-2_s390x.deb ... 682s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 682s Selecting previously unselected package libthai-data. 682s Preparing to unpack .../088-libthai-data_0.1.29-2build1_all.deb ... 682s Unpacking libthai-data (0.1.29-2build1) ... 682s Selecting previously unselected package libthai0:s390x. 682s Preparing to unpack .../089-libthai0_0.1.29-2build1_s390x.deb ... 682s Unpacking libthai0:s390x (0.1.29-2build1) ... 682s Selecting previously unselected package libpango-1.0-0:s390x. 682s Preparing to unpack .../090-libpango-1.0-0_1.56.2-1_s390x.deb ... 682s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 682s Selecting previously unselected package libpangoft2-1.0-0:s390x. 682s Preparing to unpack .../091-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 682s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 682s Selecting previously unselected package libpangocairo-1.0-0:s390x. 682s Preparing to unpack .../092-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 682s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 682s Selecting previously unselected package libpaper2:s390x. 682s Preparing to unpack .../093-libpaper2_2.2.5-0.3_s390x.deb ... 682s Unpacking libpaper2:s390x (2.2.5-0.3) ... 682s Selecting previously unselected package libpaper-utils. 682s Preparing to unpack .../094-libpaper-utils_2.2.5-0.3_s390x.deb ... 682s Unpacking libpaper-utils (2.2.5-0.3) ... 682s Selecting previously unselected package libpcre2-16-0:s390x. 682s Preparing to unpack .../095-libpcre2-16-0_10.45-1_s390x.deb ... 682s Unpacking libpcre2-16-0:s390x (10.45-1) ... 682s Selecting previously unselected package libpcre2-32-0:s390x. 682s Preparing to unpack .../096-libpcre2-32-0_10.45-1_s390x.deb ... 682s Unpacking libpcre2-32-0:s390x (10.45-1) ... 682s Selecting previously unselected package libpcre2-posix3:s390x. 682s Preparing to unpack .../097-libpcre2-posix3_10.45-1_s390x.deb ... 682s Unpacking libpcre2-posix3:s390x (10.45-1) ... 682s Selecting previously unselected package libpcre2-dev:s390x. 682s Preparing to unpack .../098-libpcre2-dev_10.45-1_s390x.deb ... 682s Unpacking libpcre2-dev:s390x (10.45-1) ... 682s Selecting previously unselected package libpkgconf3:s390x. 682s Preparing to unpack .../099-libpkgconf3_1.8.1-4_s390x.deb ... 682s Unpacking libpkgconf3:s390x (1.8.1-4) ... 682s Selecting previously unselected package zlib1g-dev:s390x. 682s Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 682s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 682s Selecting previously unselected package libpng-dev:s390x. 682s Preparing to unpack .../101-libpng-dev_1.6.47-1_s390x.deb ... 682s Unpacking libpng-dev:s390x (1.6.47-1) ... 682s Selecting previously unselected package libpotrace0:s390x. 682s Preparing to unpack .../102-libpotrace0_1.16-2build1_s390x.deb ... 682s Unpacking libpotrace0:s390x (1.16-2build1) ... 682s Selecting previously unselected package libptexenc1:s390x. 682s Preparing to unpack .../103-libptexenc1_2024.20240313.70630+ds-5build2_s390x.deb ... 682s Unpacking libptexenc1:s390x (2024.20240313.70630+ds-5build2) ... 682s Selecting previously unselected package libreadline-dev:s390x. 682s Preparing to unpack .../104-libreadline-dev_8.2-6_s390x.deb ... 682s Unpacking libreadline-dev:s390x (8.2-6) ... 682s Selecting previously unselected package libsharpyuv0:s390x. 682s Preparing to unpack .../105-libsharpyuv0_1.5.0-0.1_s390x.deb ... 682s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 682s Selecting previously unselected package libsm6:s390x. 682s Preparing to unpack .../106-libsm6_2%3a1.2.4-1_s390x.deb ... 682s Unpacking libsm6:s390x (2:1.2.4-1) ... 682s Selecting previously unselected package libsynctex2:s390x. 682s Preparing to unpack .../107-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ... 682s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ... 682s Selecting previously unselected package libtcl8.6:s390x. 682s Preparing to unpack .../108-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 682s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 682s Selecting previously unselected package libteckit0:s390x. 682s Preparing to unpack .../109-libteckit0_2.5.12+ds1-1_s390x.deb ... 682s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 682s Selecting previously unselected package libtexlua53-5:s390x. 682s Preparing to unpack .../110-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ... 682s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ... 682s Selecting previously unselected package libjbig0:s390x. 683s Preparing to unpack .../111-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 683s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 683s Selecting previously unselected package libwebp7:s390x. 683s Preparing to unpack .../112-libwebp7_1.5.0-0.1_s390x.deb ... 683s Unpacking libwebp7:s390x (1.5.0-0.1) ... 683s Selecting previously unselected package libtiff6:s390x. 683s Preparing to unpack .../113-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 683s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 683s Selecting previously unselected package libxft2:s390x. 683s Preparing to unpack .../114-libxft2_2.3.6-1build1_s390x.deb ... 683s Unpacking libxft2:s390x (2.3.6-1build1) ... 683s Selecting previously unselected package libxss1:s390x. 683s Preparing to unpack .../115-libxss1_1%3a1.2.3-1build3_s390x.deb ... 683s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 683s Selecting previously unselected package libtk8.6:s390x. 683s Preparing to unpack .../116-libtk8.6_8.6.16-1_s390x.deb ... 683s Unpacking libtk8.6:s390x (8.6.16-1) ... 683s Selecting previously unselected package libxt6t64:s390x. 683s Preparing to unpack .../117-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 683s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 683s Selecting previously unselected package libxmu6:s390x. 683s Preparing to unpack .../118-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 683s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 683s Selecting previously unselected package libxpm4:s390x. 683s Preparing to unpack .../119-libxpm4_1%3a3.5.17-1build2_s390x.deb ... 683s Unpacking libxpm4:s390x (1:3.5.17-1build2) ... 683s Selecting previously unselected package libxaw7:s390x. 683s Preparing to unpack .../120-libxaw7_2%3a1.0.16-1_s390x.deb ... 683s Unpacking libxaw7:s390x (2:1.0.16-1) ... 683s Selecting previously unselected package libxi6:s390x. 683s Preparing to unpack .../121-libxi6_2%3a1.8.2-1_s390x.deb ... 683s Unpacking libxi6:s390x (2:1.8.2-1) ... 683s Selecting previously unselected package libzzip-0-13t64:s390x. 683s Preparing to unpack .../122-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ... 683s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 683s Selecting previously unselected package zip. 683s Preparing to unpack .../123-zip_3.0-14ubuntu2_s390x.deb ... 683s Unpacking zip (3.0-14ubuntu2) ... 683s Selecting previously unselected package unzip. 683s Preparing to unpack .../124-unzip_6.0-28ubuntu6_s390x.deb ... 683s Unpacking unzip (6.0-28ubuntu6) ... 683s Selecting previously unselected package xdg-utils. 683s Preparing to unpack .../125-xdg-utils_1.2.1-2ubuntu1_all.deb ... 683s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 683s Selecting previously unselected package r-base-core. 683s Preparing to unpack .../126-r-base-core_4.4.3-1_s390x.deb ... 683s Unpacking r-base-core (4.4.3-1) ... 683s Selecting previously unselected package r-cran-littler. 683s Preparing to unpack .../127-r-cran-littler_0.3.20-2_s390x.deb ... 683s Unpacking r-cran-littler (0.3.20-2) ... 683s Selecting previously unselected package littler. 683s Preparing to unpack .../128-littler_0.3.20-2_all.deb ... 683s Unpacking littler (0.3.20-2) ... 683s Selecting previously unselected package node-bootstrap-sass. 683s Preparing to unpack .../129-node-bootstrap-sass_3.4.3-2_all.deb ... 683s Unpacking node-bootstrap-sass (3.4.3-2) ... 683s Selecting previously unselected package node-html5shiv. 683s Preparing to unpack .../130-node-html5shiv_3.7.3+dfsg-5_all.deb ... 683s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 683s Selecting previously unselected package node-normalize.css. 683s Preparing to unpack .../131-node-normalize.css_8.0.1-5_all.deb ... 683s Unpacking node-normalize.css (8.0.1-5) ... 683s Selecting previously unselected package pandoc-data. 683s Preparing to unpack .../132-pandoc-data_3.1.11.1-3build1_all.deb ... 683s Unpacking pandoc-data (3.1.11.1-3build1) ... 683s Selecting previously unselected package pandoc. 683s Preparing to unpack .../133-pandoc_3.1.11.1+ds-2_s390x.deb ... 683s Unpacking pandoc (3.1.11.1+ds-2) ... 684s Selecting previously unselected package liblzma-dev:s390x. 684s Preparing to unpack .../134-liblzma-dev_5.6.4-1_s390x.deb ... 684s Unpacking liblzma-dev:s390x (5.6.4-1) ... 684s Selecting previously unselected package pkgconf-bin. 684s Preparing to unpack .../135-pkgconf-bin_1.8.1-4_s390x.deb ... 684s Unpacking pkgconf-bin (1.8.1-4) ... 684s Selecting previously unselected package pkgconf:s390x. 684s Preparing to unpack .../136-pkgconf_1.8.1-4_s390x.deb ... 684s Unpacking pkgconf:s390x (1.8.1-4) ... 684s Selecting previously unselected package libtirpc-dev:s390x. 684s Preparing to unpack .../137-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 684s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 684s Selecting previously unselected package r-base-dev. 684s Preparing to unpack .../138-r-base-dev_4.4.3-1_all.deb ... 684s Unpacking r-base-dev (4.4.3-1) ... 684s Selecting previously unselected package pkg-r-autopkgtest. 684s Preparing to unpack .../139-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 684s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 684s Selecting previously unselected package r-bioc-biocgenerics. 684s Preparing to unpack .../140-r-bioc-biocgenerics_0.52.0-2_all.deb ... 684s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 685s Selecting previously unselected package r-bioc-biobase. 685s Preparing to unpack .../141-r-bioc-biobase_2.66.0-2_s390x.deb ... 685s Unpacking r-bioc-biobase (2.66.0-2) ... 685s Selecting previously unselected package r-bioc-s4vectors. 685s Preparing to unpack .../142-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 685s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 685s Selecting previously unselected package r-bioc-iranges. 685s Preparing to unpack .../143-r-bioc-iranges_2.40.1-2_s390x.deb ... 685s Unpacking r-bioc-iranges (2.40.1-2) ... 685s Selecting previously unselected package r-cran-dbi. 685s Preparing to unpack .../144-r-cran-dbi_1.2.3-1_all.deb ... 685s Unpacking r-cran-dbi (1.2.3-1) ... 685s Selecting previously unselected package r-cran-bit. 685s Preparing to unpack .../145-r-cran-bit_4.6.0+dfsg-1_s390x.deb ... 685s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 685s Selecting previously unselected package r-cran-bit64. 685s Preparing to unpack .../146-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ... 685s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 685s Selecting previously unselected package r-cran-rlang. 685s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_s390x.deb ... 685s Unpacking r-cran-rlang (1.1.5-1) ... 685s Selecting previously unselected package r-cran-cli. 685s Preparing to unpack .../148-r-cran-cli_3.6.4-1_s390x.deb ... 685s Unpacking r-cran-cli (3.6.4-1) ... 685s Selecting previously unselected package r-cran-glue. 685s Preparing to unpack .../149-r-cran-glue_1.8.0-1_s390x.deb ... 685s Unpacking r-cran-glue (1.8.0-1) ... 685s Selecting previously unselected package r-cran-lifecycle. 685s Preparing to unpack .../150-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 685s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 685s Selecting previously unselected package r-cran-vctrs. 685s Preparing to unpack .../151-r-cran-vctrs_0.6.5-1_s390x.deb ... 685s Unpacking r-cran-vctrs (0.6.5-1) ... 685s Selecting previously unselected package r-cran-blob. 685s Preparing to unpack .../152-r-cran-blob_1.2.4-1_all.deb ... 685s Unpacking r-cran-blob (1.2.4-1) ... 685s Selecting previously unselected package r-cran-fastmap. 685s Preparing to unpack .../153-r-cran-fastmap_1.2.0-1_s390x.deb ... 685s Unpacking r-cran-fastmap (1.2.0-1) ... 685s Selecting previously unselected package r-cran-cachem. 685s Preparing to unpack .../154-r-cran-cachem_1.1.0-1_s390x.deb ... 685s Unpacking r-cran-cachem (1.1.0-1) ... 685s Selecting previously unselected package r-cran-memoise. 685s Preparing to unpack .../155-r-cran-memoise_2.0.1-1_all.deb ... 685s Unpacking r-cran-memoise (2.0.1-1) ... 685s Selecting previously unselected package r-cran-pkgconfig. 685s Preparing to unpack .../156-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 685s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 685s Selecting previously unselected package r-cran-plogr. 685s Preparing to unpack .../157-r-cran-plogr_0.2.0-3build1_all.deb ... 685s Unpacking r-cran-plogr (0.2.0-3build1) ... 685s Selecting previously unselected package r-cran-cpp11. 685s Preparing to unpack .../158-r-cran-cpp11_0.5.2-1_all.deb ... 685s Unpacking r-cran-cpp11 (0.5.2-1) ... 685s Selecting previously unselected package r-cran-rsqlite. 685s Preparing to unpack .../159-r-cran-rsqlite_2.3.9-1_s390x.deb ... 685s Unpacking r-cran-rsqlite (2.3.9-1) ... 685s Selecting previously unselected package r-cran-curl. 685s Preparing to unpack .../160-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 685s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 685s Selecting previously unselected package r-cran-jsonlite. 685s Preparing to unpack .../161-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 685s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 685s Selecting previously unselected package r-cran-mime. 685s Preparing to unpack .../162-r-cran-mime_0.12-2_s390x.deb ... 685s Unpacking r-cran-mime (0.12-2) ... 685s Selecting previously unselected package r-cran-sys. 685s Preparing to unpack .../163-r-cran-sys_3.4.3-1_s390x.deb ... 685s Unpacking r-cran-sys (3.4.3-1) ... 685s Selecting previously unselected package r-cran-askpass. 685s Preparing to unpack .../164-r-cran-askpass_1.2.1-1_s390x.deb ... 685s Unpacking r-cran-askpass (1.2.1-1) ... 685s Selecting previously unselected package r-cran-openssl. 685s Preparing to unpack .../165-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 685s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 685s Selecting previously unselected package r-cran-r6. 685s Preparing to unpack .../166-r-cran-r6_2.6.1-1_all.deb ... 685s Unpacking r-cran-r6 (2.6.1-1) ... 685s Selecting previously unselected package r-cran-httr. 685s Preparing to unpack .../167-r-cran-httr_1.4.7+dfsg-1_all.deb ... 685s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 685s Selecting previously unselected package r-cran-png. 685s Preparing to unpack .../168-r-cran-png_0.1-8-1build2_s390x.deb ... 685s Unpacking r-cran-png (0.1-8-1build2) ... 685s Selecting previously unselected package r-bioc-zlibbioc. 685s Preparing to unpack .../169-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 685s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 685s Selecting previously unselected package r-bioc-xvector. 685s Preparing to unpack .../170-r-bioc-xvector_0.46.0-2_s390x.deb ... 685s Unpacking r-bioc-xvector (0.46.0-2) ... 685s Selecting previously unselected package r-bioc-ucsc.utils. 685s Preparing to unpack .../171-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 685s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 685s Selecting previously unselected package r-bioc-genomeinfodbdata. 685s Preparing to unpack .../172-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 685s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 685s Selecting previously unselected package r-bioc-genomeinfodb. 685s Preparing to unpack .../173-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 685s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 685s Selecting previously unselected package r-cran-crayon. 685s Preparing to unpack .../174-r-cran-crayon_1.5.3-1_all.deb ... 685s Unpacking r-cran-crayon (1.5.3-1) ... 685s Selecting previously unselected package r-bioc-biostrings. 685s Preparing to unpack .../175-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 685s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 685s Selecting previously unselected package r-bioc-keggrest. 685s Preparing to unpack .../176-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 685s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 685s Selecting previously unselected package r-bioc-annotationdbi. 685s Preparing to unpack .../177-r-bioc-annotationdbi_1.68.0-2_all.deb ... 685s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 685s Selecting previously unselected package r-bioc-biocio. 685s Preparing to unpack .../178-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 685s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 685s Selecting previously unselected package r-cran-formatr. 685s Preparing to unpack .../179-r-cran-formatr_1.14-2_all.deb ... 685s Unpacking r-cran-formatr (1.14-2) ... 685s Selecting previously unselected package r-cran-lambda.r. 685s Preparing to unpack .../180-r-cran-lambda.r_1.2.4-2build1_all.deb ... 685s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 685s Selecting previously unselected package r-cran-futile.options. 685s Preparing to unpack .../181-r-cran-futile.options_1.0.1-3build1_all.deb ... 685s Unpacking r-cran-futile.options (1.0.1-3build1) ... 685s Selecting previously unselected package r-cran-futile.logger. 685s Preparing to unpack .../182-r-cran-futile.logger_1.4.3-4build1_all.deb ... 685s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 685s Selecting previously unselected package r-cran-snow. 685s Preparing to unpack .../183-r-cran-snow_1%3a0.4.4-2_all.deb ... 685s Unpacking r-cran-snow (1:0.4.4-2) ... 685s Selecting previously unselected package r-cran-codetools. 685s Preparing to unpack .../184-r-cran-codetools_0.2-20-1_all.deb ... 685s Unpacking r-cran-codetools (0.2-20-1) ... 685s Selecting previously unselected package r-cran-bh. 685s Preparing to unpack .../185-r-cran-bh_1.84.0-1_all.deb ... 685s Unpacking r-cran-bh (1.84.0-1) ... 685s Selecting previously unselected package r-bioc-biocparallel. 685s Preparing to unpack .../186-r-bioc-biocparallel_1.40.0-2_s390x.deb ... 685s Unpacking r-bioc-biocparallel (1.40.0-2) ... 685s Selecting previously unselected package r-cran-base64enc. 685s Preparing to unpack .../187-r-cran-base64enc_0.1-3-3_s390x.deb ... 685s Unpacking r-cran-base64enc (0.1-3-3) ... 685s Selecting previously unselected package r-cran-digest. 685s Preparing to unpack .../188-r-cran-digest_0.6.37-1_s390x.deb ... 685s Unpacking r-cran-digest (0.6.37-1) ... 685s Selecting previously unselected package r-cran-htmltools. 685s Preparing to unpack .../189-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 685s Unpacking r-cran-htmltools (0.5.8.1-1) ... 685s Selecting previously unselected package r-cran-evaluate. 685s Preparing to unpack .../190-r-cran-evaluate_1.0.3-1_all.deb ... 685s Unpacking r-cran-evaluate (1.0.3-1) ... 685s Selecting previously unselected package r-cran-xfun. 685s Preparing to unpack .../191-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 685s Unpacking r-cran-xfun (0.51+dfsg-1) ... 685s Selecting previously unselected package r-cran-highr. 685s Preparing to unpack .../192-r-cran-highr_0.11+dfsg-1_all.deb ... 685s Unpacking r-cran-highr (0.11+dfsg-1) ... 685s Selecting previously unselected package r-cran-yaml. 685s Preparing to unpack .../193-r-cran-yaml_2.3.10-1_s390x.deb ... 685s Unpacking r-cran-yaml (2.3.10-1) ... 685s Selecting previously unselected package libjs-mathjax. 685s Preparing to unpack .../194-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 685s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 686s Selecting previously unselected package r-cran-knitr. 686s Preparing to unpack .../195-r-cran-knitr_1.49+dfsg-1_all.deb ... 686s Unpacking r-cran-knitr (1.49+dfsg-1) ... 686s Selecting previously unselected package r-cran-jquerylib. 686s Preparing to unpack .../196-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 686s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 686s Selecting previously unselected package r-cran-fs. 686s Preparing to unpack .../197-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 686s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 686s Selecting previously unselected package r-cran-rappdirs. 686s Preparing to unpack .../198-r-cran-rappdirs_0.3.3-1_s390x.deb ... 686s Unpacking r-cran-rappdirs (0.3.3-1) ... 686s Selecting previously unselected package r-cran-sass. 686s Preparing to unpack .../199-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 686s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 686s Selecting previously unselected package r-cran-bslib. 686s Preparing to unpack .../200-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 686s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 686s Selecting previously unselected package r-cran-fontawesome. 686s Preparing to unpack .../201-r-cran-fontawesome_0.5.3-1_all.deb ... 686s Unpacking r-cran-fontawesome (0.5.3-1) ... 686s Selecting previously unselected package r-cran-tinytex. 686s Preparing to unpack .../202-r-cran-tinytex_0.56-1_all.deb ... 686s Unpacking r-cran-tinytex (0.56-1) ... 686s Selecting previously unselected package libjs-modernizr. 686s Preparing to unpack .../203-libjs-modernizr_3.13.0-0.1_all.deb ... 686s Unpacking libjs-modernizr (3.13.0-0.1) ... 686s Selecting previously unselected package r-cran-pkgkitten. 686s Preparing to unpack .../204-r-cran-pkgkitten_0.2.4-1_all.deb ... 686s Unpacking r-cran-pkgkitten (0.2.4-1) ... 686s Selecting previously unselected package r-cran-rcpp. 686s Preparing to unpack .../205-r-cran-rcpp_1.0.14-1_s390x.deb ... 686s Unpacking r-cran-rcpp (1.0.14-1) ... 686s Selecting previously unselected package r-cran-later. 686s Preparing to unpack .../206-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 686s Unpacking r-cran-later (1.4.1+dfsg-1) ... 686s Selecting previously unselected package r-cran-magrittr. 686s Preparing to unpack .../207-r-cran-magrittr_2.0.3-1_s390x.deb ... 686s Unpacking r-cran-magrittr (2.0.3-1) ... 686s Selecting previously unselected package r-cran-promises. 686s Preparing to unpack .../208-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 686s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 686s Selecting previously unselected package r-cran-httpuv. 686s Preparing to unpack .../209-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 686s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 686s Selecting previously unselected package r-cran-xtable. 686s Preparing to unpack .../210-r-cran-xtable_1%3a1.8-4-2_all.deb ... 686s Unpacking r-cran-xtable (1:1.8-4-2) ... 686s Selecting previously unselected package r-cran-sourcetools. 686s Preparing to unpack .../211-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 686s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 686s Selecting previously unselected package r-cran-withr. 686s Preparing to unpack .../212-r-cran-withr_3.0.2+dfsg-1_all.deb ... 686s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 686s Selecting previously unselected package r-cran-commonmark. 686s Preparing to unpack .../213-r-cran-commonmark_1.9.2-2_s390x.deb ... 686s Unpacking r-cran-commonmark (1.9.2-2) ... 686s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 686s Preparing to unpack .../214-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 686s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 686s Selecting previously unselected package r-cran-shiny. 686s Preparing to unpack .../215-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 686s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 686s Selecting previously unselected package r-cran-rmarkdown. 686s Preparing to unpack .../216-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 686s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 686s Selecting previously unselected package r-cran-bookdown. 686s Preparing to unpack .../217-r-cran-bookdown_0.42+dfsg-1_all.deb ... 686s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 686s Selecting previously unselected package r-cran-biocmanager. 686s Preparing to unpack .../218-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 686s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 686s Selecting previously unselected package tex-common. 686s Preparing to unpack .../219-tex-common_6.19_all.deb ... 686s Unpacking tex-common (6.19) ... 686s Selecting previously unselected package t1utils. 686s Preparing to unpack .../220-t1utils_1.41-4build3_s390x.deb ... 686s Unpacking t1utils (1.41-4build3) ... 686s Selecting previously unselected package texlive-binaries. 686s Preparing to unpack .../221-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ... 686s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 687s Selecting previously unselected package texlive-base. 687s Preparing to unpack .../222-texlive-base_2024.20250114-1_all.deb ... 687s Unpacking texlive-base (2024.20250114-1) ... 688s Selecting previously unselected package texlive-latex-base. 688s Preparing to unpack .../223-texlive-latex-base_2024.20250114-1_all.deb ... 688s Unpacking texlive-latex-base (2024.20250114-1) ... 688s Selecting previously unselected package texlive-bibtex-extra. 688s Preparing to unpack .../224-texlive-bibtex-extra_2024.20250114-1_all.deb ... 688s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 691s Selecting previously unselected package r-bioc-biocversion. 691s Preparing to unpack .../225-r-bioc-biocversion_3.20.0-2_all.deb ... 691s Unpacking r-bioc-biocversion (3.20.0-2) ... 691s Selecting previously unselected package r-bioc-biocstyle. 691s Preparing to unpack .../226-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 691s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 691s Selecting previously unselected package r-cran-lattice. 691s Preparing to unpack .../227-r-cran-lattice_0.22-6-1_s390x.deb ... 691s Unpacking r-cran-lattice (0.22-6-1) ... 691s Selecting previously unselected package r-cran-matrix. 691s Preparing to unpack .../228-r-cran-matrix_1.7-3-1_s390x.deb ... 691s Unpacking r-cran-matrix (1.7-3-1) ... 691s Selecting previously unselected package r-cran-matrixstats. 691s Preparing to unpack .../229-r-cran-matrixstats_1.5.0-1_s390x.deb ... 691s Unpacking r-cran-matrixstats (1.5.0-1) ... 691s Selecting previously unselected package r-bioc-matrixgenerics. 691s Preparing to unpack .../230-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 691s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 691s Selecting previously unselected package r-cran-abind. 691s Preparing to unpack .../231-r-cran-abind_1.4-8-1_all.deb ... 691s Unpacking r-cran-abind (1.4-8-1) ... 691s Selecting previously unselected package r-bioc-s4arrays. 691s Preparing to unpack .../232-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ... 691s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 691s Selecting previously unselected package r-bioc-sparsearray. 691s Preparing to unpack .../233-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ... 691s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 691s Selecting previously unselected package r-bioc-delayedarray. 691s Preparing to unpack .../234-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ... 691s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 691s Selecting previously unselected package r-cran-statmod. 691s Preparing to unpack .../235-r-cran-statmod_1.5.0-1_s390x.deb ... 691s Unpacking r-cran-statmod (1.5.0-1) ... 691s Selecting previously unselected package r-bioc-limma. 691s Preparing to unpack .../236-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ... 691s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 691s Selecting previously unselected package r-cran-locfit. 691s Preparing to unpack .../237-r-cran-locfit_1.5-9.12-1_s390x.deb ... 691s Unpacking r-cran-locfit (1.5-9.12-1) ... 691s Selecting previously unselected package r-bioc-edger. 691s Preparing to unpack .../238-r-bioc-edger_4.4.2+dfsg-1_s390x.deb ... 691s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 691s Selecting previously unselected package r-bioc-genomicranges. 691s Preparing to unpack .../239-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ... 691s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 691s Selecting previously unselected package r-bioc-summarizedexperiment. 691s Preparing to unpack .../240-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 691s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 691s Selecting previously unselected package r-cran-bitops. 691s Preparing to unpack .../241-r-cran-bitops_1.0-9-1_s390x.deb ... 691s Unpacking r-cran-bitops (1.0-9-1) ... 691s Selecting previously unselected package r-bioc-rhtslib. 691s Preparing to unpack .../242-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ... 691s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 691s Selecting previously unselected package r-bioc-rsamtools. 691s Preparing to unpack .../243-r-bioc-rsamtools_2.22.0+dfsg-2_s390x.deb ... 691s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 691s Selecting previously unselected package r-bioc-genomicalignments. 691s Preparing to unpack .../244-r-bioc-genomicalignments_1.42.0-2_s390x.deb ... 691s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 691s Selecting previously unselected package r-cran-xml. 691s Preparing to unpack .../245-r-cran-xml_3.99-0.18-1_s390x.deb ... 691s Unpacking r-cran-xml (3.99-0.18-1) ... 691s Selecting previously unselected package r-cran-rcurl. 691s Preparing to unpack .../246-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 691s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 691s Selecting previously unselected package r-cran-rjson. 691s Preparing to unpack .../247-r-cran-rjson_0.2.23-1_s390x.deb ... 691s Unpacking r-cran-rjson (0.2.23-1) ... 691s Selecting previously unselected package 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693s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 693s Setting up libpotrace0:s390x (1.16-2build1) ... 693s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 693s Setting up libice6:s390x (2:1.1.1-1) ... 693s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 693s Setting up liblapack3:s390x (3.12.1-2) ... 693s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 693s Setting up libpcre2-dev:s390x (10.45-1) ... 693s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 693s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 693s Setting up libpng-dev:s390x (1.6.47-1) ... 693s Setting up libpaper-utils (2.2.5-0.3) ... 693s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 693s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 693s Setting up pkgconf:s390x (1.8.1-4) ... 693s Setting up libthai0:s390x (0.1.29-2build1) ... 693s Setting up 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r-bioc-limma (3.62.2+dfsg-1) ... 697s Setting up r-cran-later (1.4.1+dfsg-1) ... 697s Setting up r-cran-matrix (1.7-3-1) ... 697s Setting up r-cran-htmltools (0.5.8.1-1) ... 697s Setting up r-cran-tinytex (0.56-1) ... 697s Setting up r-cran-knitr (1.49+dfsg-1) ... 697s Setting up g++ (4:14.2.0-1ubuntu1) ... 697s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 697s Setting up r-cran-cachem (1.1.0-1) ... 697s Setting up r-cran-sass (0.4.9+dfsg-1) ... 697s Setting up build-essential (12.10ubuntu1) ... 697s Setting up r-bioc-iranges (2.40.1-2) ... 697s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 697s Setting up r-cran-restfulr (0.0.15-1) ... 697s Setting up r-cran-vctrs (0.6.5-1) ... 697s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 697s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 697s Setting up r-bioc-biocparallel (1.40.0-2) ... 697s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 697s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 697s Setting up r-cran-fontawesome (0.5.3-1) ... 697s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 697s Setting up gfortran (4:14.2.0-1ubuntu1) ... 697s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 697s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 697s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 697s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 697s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 697s Setting up texlive-bibtex-extra (2024.20250114-1) ... 697s Setting up r-cran-httr (1.4.7+dfsg-1) ... 697s Setting up r-cran-memoise (2.0.1-1) ... 697s Setting up r-cran-promises (1.3.2+dfsg-1) ... 697s Setting up r-cran-blob (1.2.4-1) ... 697s Setting up r-bioc-xvector (0.46.0-2) ... 697s Setting up r-cran-rsqlite (2.3.9-1) ... 697s Setting up r-base-dev (4.4.3-1) ... 697s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 697s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 697s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 697s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 697s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 697s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 697s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 697s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 697s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 697s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 697s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 697s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 697s Setting up r-cran-bookdown (0.42+dfsg-1) ... 697s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 697s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 697s Setting up r-bioc-annotationdbi (1.68.0-2) ... 697s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 697s Setting up r-bioc-genomicalignments (1.42.0-2) ... 697s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ... 697s Setting up r-bioc-rtracklayer (1.66.0-2) ... 697s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 697s Setting up r-bioc-grohmm (1.40.3-2) ... 697s Processing triggers for libc-bin (2.41-1ubuntu2) ... 697s Processing triggers for man-db (2.13.0-1) ... 698s Processing triggers for install-info (7.1.1-1) ... 698s Processing triggers for tex-common (6.19) ... 698s Running updmap-sys. This may take some time... done. 698s Running mktexlsr /var/lib/texmf ... done. 698s Building format(s) --all. 737s This may take some time... done. 738s autopkgtest [17:56:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 738s autopkgtest [17:56:15]: test pkg-r-autopkgtest: [----------------------- 738s Test: Try to load the R library groHMM 738s 738s R version 4.4.3 (2025-02-28) -- "Trophy Case" 738s Copyright (C) 2025 The R Foundation for Statistical Computing 738s Platform: s390x-ibm-linux-gnu 738s 738s R is free software and comes with ABSOLUTELY NO WARRANTY. 738s You are welcome to redistribute it under certain conditions. 738s Type 'license()' or 'licence()' for distribution details. 738s 738s R is a collaborative project with many contributors. 738s Type 'contributors()' for more information and 738s 'citation()' on how to cite R or R packages in publications. 738s 738s Type 'demo()' for some demos, 'help()' for on-line help, or 738s 'help.start()' for an HTML browser interface to help. 738s Type 'q()' to quit R. 738s 738s > library('groHMM') 738s Loading required package: MASS 738s Loading required package: parallel 738s Loading required package: S4Vectors 738s Loading required package: stats4 739s Loading required package: BiocGenerics 739s 739s Attaching package: ‘BiocGenerics’ 739s 739s The following objects are masked from ‘package:stats’: 739s 739s IQR, mad, sd, var, xtabs 739s 739s The following objects are masked from ‘package:base’: 739s 739s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 739s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 739s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 739s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 739s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 739s table, tapply, union, unique, unsplit, which.max, which.min 739s 739s 739s Attaching package: ‘S4Vectors’ 739s 739s The following object is masked from ‘package:utils’: 739s 739s findMatches 739s 739s The following objects are masked from ‘package:base’: 739s 739s expand.grid, I, unname 739s 739s Loading required package: IRanges 740s Loading required package: GenomeInfoDb 740s Loading required package: GenomicRanges 740s Loading required package: GenomicAlignments 740s Loading required package: SummarizedExperiment 740s Loading required package: MatrixGenerics 740s Loading required package: matrixStats 740s 740s Attaching package: ‘MatrixGenerics’ 740s 740s The following objects are masked from ‘package:matrixStats’: 740s 740s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 740s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 740s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 740s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 740s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 740s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 740s colWeightedMeans, colWeightedMedians, colWeightedSds, 740s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 740s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 740s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 740s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 740s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 740s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 740s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 740s rowWeightedSds, rowWeightedVars 740s 740s Loading required package: Biobase 741s Welcome to Bioconductor 741s 741s Vignettes contain introductory material; view with 741s 'browseVignettes()'. To cite Bioconductor, see 741s 'citation("Biobase")', and for packages 'citation("pkgname")'. 741s 741s 741s Attaching package: ‘Biobase’ 741s 741s The following object is masked from ‘package:MatrixGenerics’: 741s 741s rowMedians 741s 741s The following objects are masked from ‘package:matrixStats’: 741s 741s anyMissing, rowMedians 741s 743s Loading required package: Biostrings 743s Loading required package: XVector 744s 744s Attaching package: ‘Biostrings’ 744s 744s The following object is masked from ‘package:base’: 744s 744s strsplit 744s 744s Loading required package: Rsamtools 744s Loading required package: rtracklayer 746s > 746s > 746s Other tests are currently unsupported! 746s They will be progressively added. 746s autopkgtest [17:56:23]: test pkg-r-autopkgtest: -----------------------] 747s autopkgtest [17:56:24]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 747s pkg-r-autopkgtest PASS 747s autopkgtest [17:56:24]: @@@@@@@@@@@@@@@@@@@@ summary 747s pkg-r-autopkgtest PASS 753s nova [W] Using flock in prodstack6-s390x 753s Creating nova instance adt-plucky-s390x-r-bioc-grohmm-20250315-174356-juju-7f2275-prod-proposed-migration-environment-2-e4761eab-6ce9-4608-a6e8-f2ae3802e8e9 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 753s nova [W] Timed out waiting for 4e1c6643-1717-4160-b833-20d53bf4ab22 to get deleted.