0s autopkgtest [17:43:57]: starting date and time: 2025-03-15 17:43:57+0000
  0s autopkgtest [17:43:57]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:43:57]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9ws8o9pk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-graph --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-12.secgroup --name adt-plucky-s390x-r-bioc-graph-20250315-174356-juju-7f2275-prod-proposed-migration-environment-20-507fdd8f-29d9-4420-9d10-4854447484b7 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
100s autopkgtest [17:45:37]: testbed dpkg architecture: s390x
100s autopkgtest [17:45:37]: testbed apt version: 2.9.33
100s autopkgtest [17:45:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
100s autopkgtest [17:45:37]: testbed release detected to be: None
101s autopkgtest [17:45:38]: updating testbed package index (apt update)
101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
102s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
102s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
102s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
102s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
102s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
102s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
102s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
102s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
102s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
102s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
102s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
102s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
102s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
102s Fetched 1073 kB in 1s (1096 kB/s)
103s Reading package lists...
103s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s Calculating upgrade...
104s Calculating upgrade...
104s The following packages were automatically installed and are no longer required:
104s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
104s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
104s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
104s   linux-tools-6.11.0-8-generic
104s Use 'sudo apt autoremove' to remove them.
104s The following packages will be upgraded:
104s   pinentry-curses python3-jinja2 strace
104s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
104s Need to get 652 kB of archives.
104s After this operation, 27.6 kB of additional disk space will be used.
104s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
105s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
105s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
105s Fetched 652 kB in 1s (878 kB/s)
105s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
105s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
105s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
105s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
105s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
105s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
105s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
105s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
105s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
105s Setting up strace (6.13+ds-1ubuntu1) ...
105s Processing triggers for man-db (2.13.0-1) ...
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s Solving dependencies...
106s The following packages will be REMOVED:
106s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
106s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
106s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
106s   linux-tools-6.11.0-8-generic*
107s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
107s After this operation, 167 MB disk space will be freed.
107s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
107s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
107s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
107s Removing libpython3.12t64:s390x (3.12.9-1) ...
107s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
107s Removing libnsl2:s390x (1.3.0-3build3) ...
107s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
107s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
107s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
108s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
108s Processing triggers for libc-bin (2.41-1ubuntu1) ...
108s (Reading database ... 
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(Reading database ... 85%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
108s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
108s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
108s autopkgtest [17:45:45]: upgrading testbed (apt dist-upgrade and autopurge)
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
109s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
109s Starting 2 pkgProblemResolver with broken count: 0
109s Done
109s Entering ResolveByKeep
109s 
109s Calculating upgrade...
109s The following packages will be upgraded:
109s   libc-bin libc-dev-bin libc6 libc6-dev locales
109s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s Need to get 9512 kB of archives.
109s After this operation, 8192 B of additional disk space will be used.
109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
110s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
110s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
111s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
111s Preconfiguring packages ...
112s Fetched 9512 kB in 2s (4669 kB/s)
112s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
112s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
112s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
112s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
112s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
112s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
112s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
112s Setting up libc6:s390x (2.41-1ubuntu2) ...
112s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
112s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
112s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
112s Setting up libc-bin (2.41-1ubuntu2) ...
112s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
112s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
112s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
112s Setting up locales (2.41-1ubuntu2) ...
112s Generating locales (this might take a while)...
114s   en_US.UTF-8... done
114s Generation complete.
114s Setting up libc-dev-bin (2.41-1ubuntu2) ...
114s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
114s Processing triggers for man-db (2.13.0-1) ...
114s Processing triggers for systemd (257.3-1ubuntu3) ...
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
115s Starting pkgProblemResolver with broken count: 0
115s Starting 2 pkgProblemResolver with broken count: 0
115s Done
116s Solving dependencies...
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s autopkgtest [17:45:53]: rebooting testbed after setup commands that affected boot
137s autopkgtest [17:46:14]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
139s autopkgtest [17:46:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-graph
141s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (dsc) [2083 B]
141s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (tar) [1505 kB]
141s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (diff) [5492 B]
141s gpgv: Signature made Sun Jan 12 11:14:21 2025 UTC
141s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
141s gpgv:                issuer "crusoe@debian.org"
141s gpgv: Can't check signature: No public key
141s dpkg-source: warning: cannot verify inline signature for ./r-bioc-graph_1.84.1-1.dsc: no acceptable signature found
141s autopkgtest [17:46:18]: testing package r-bioc-graph version 1.84.1-1
142s autopkgtest [17:46:19]: build not needed
147s autopkgtest [17:46:24]: test pkg-r-autopkgtest: preparing testbed
148s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s Starting pkgProblemResolver with broken count: 0
148s Starting 2 pkgProblemResolver with broken count: 0
148s Done
148s The following NEW packages will be installed:
148s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
148s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
148s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
148s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
148s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
148s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
148s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
148s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
148s   libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev
148s   libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
148s   libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
148s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
148s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
148s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
148s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
148s   libjs-popper.js libjs-prettify libjs-sifter.js
148s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
148s   liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libmpfi0
148s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
148s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
148s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
148s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
148s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
148s   libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2
148s   libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler
148s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
148s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
148s   r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-graph
148s   r-bioc-rbgl r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown
148s   r-cran-bslib r-cran-cachem r-cran-cli r-cran-cluster r-cran-commonmark
148s   r-cran-crayon r-cran-digest r-cran-evaluate r-cran-fastmap
148s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
148s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
148s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime
148s   r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp
148s   r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass r-cran-shiny
148s   r-cran-sourcetools r-cran-sparsem r-cran-tinytex r-cran-withr r-cran-xfun
148s   r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common texlive-base
148s   texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common
148s   xdg-utils zip zlib1g-dev
149s 0 upgraded, 199 newly installed, 0 to remove and 0 not upgraded.
149s Need to get 346 MB of archives.
149s After this operation, 1290 MB of additional disk space will be used.
149s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
149s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
149s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
150s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
150s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
150s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
150s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
150s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
150s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
150s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
150s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
150s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
150s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
151s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
152s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
152s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
152s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
152s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
152s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
152s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
152s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
152s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
152s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
153s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
153s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
153s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
153s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
153s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
153s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
153s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
153s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
153s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
153s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
153s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
153s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
153s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
154s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
154s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
154s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
154s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
154s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B]
154s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
154s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
154s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
154s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
154s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
154s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB]
155s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
155s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
155s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
155s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
155s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
155s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
155s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
155s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
155s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
155s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
155s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
155s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
155s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
155s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
155s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
156s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
156s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
156s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
156s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
156s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
156s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
156s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
156s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
156s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
156s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
156s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
156s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
156s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
156s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
156s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
156s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
156s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
156s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
156s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
156s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
156s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
156s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
157s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
158s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
158s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
158s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
158s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
158s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
158s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
158s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
158s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
158s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
158s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
158s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
158s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
158s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
158s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
158s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
158s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
158s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
159s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
159s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
159s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
159s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
159s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
159s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
159s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
159s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
159s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
159s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
159s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
159s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
159s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
159s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
159s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
159s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
159s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
159s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
159s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
159s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
159s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
159s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
159s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
159s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
159s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
162s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
162s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
162s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
162s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
162s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
162s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
162s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
168s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
168s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
168s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
168s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
168s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
168s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
168s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
168s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
168s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
168s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
168s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
169s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
169s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
169s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
169s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
169s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
169s Get:151 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
169s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB]
169s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
169s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
169s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
169s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
170s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
170s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
170s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
170s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
170s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
170s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
170s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
170s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
170s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
170s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
170s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
170s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
170s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
170s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
170s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
170s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
170s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
170s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
170s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
171s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
171s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
171s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
171s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB]
171s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
171s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
171s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
171s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
171s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
171s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
171s Get:186 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
171s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
172s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
174s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
174s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
183s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
183s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
183s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-graph s390x 1.84.1-1 [1298 kB]
183s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
183s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rbgl s390x 1.82.0+dfsg-2 [616 kB]
183s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cluster s390x 2.1.8-1 [577 kB]
183s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB]
183s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sparsem s390x 1.84-2-1 [826 kB]
183s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB]
184s Preconfiguring packages ...
184s Fetched 346 MB in 35s (9894 kB/s)
184s Selecting previously unselected package libisl23:s390x.
184s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
184s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
184s Unpacking libisl23:s390x (0.27-1) ...
184s Selecting previously unselected package libmpc3:s390x.
184s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
184s Unpacking libmpc3:s390x (1.3.1-1build2) ...
184s Selecting previously unselected package cpp-14-s390x-linux-gnu.
184s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
184s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
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186s Selecting previously unselected package libgfortran5:s390x.
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186s Selecting previously unselected package gfortran-s390x-linux-gnu.
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186s Selecting previously unselected package icu-devtools.
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186s Selecting previously unselected package javascript-common.
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186s Selecting previously unselected package libio-string-perl.
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186s Selecting previously unselected package liblatex-tounicode-perl.
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186s Selecting previously unselected package libbibtex-parser-perl.
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186s Selecting previously unselected package libblas3:s390x.
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187s Selecting previously unselected package libpixman-1-0:s390x.
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187s Selecting previously unselected package libcairo2:s390x.
187s Preparing to unpack .../053-libcairo2_1.18.2-2_s390x.deb ...
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187s Selecting previously unselected package libdatrie1:s390x.
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187s Selecting previously unselected package libice6:s390x.
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189s Selecting previously unselected package r-cran-littler.
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189s Selecting previously unselected package node-html5shiv.
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189s Selecting previously unselected package node-normalize.css.
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189s Selecting previously unselected package pandoc-data.
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191s Selecting previously unselected package liblzma-dev:s390x.
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191s Selecting previously unselected package r-bioc-biocgenerics.
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191s Selecting previously unselected package r-cran-base64enc.
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191s Selecting previously unselected package r-cran-rlang.
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191s Selecting previously unselected package r-cran-htmltools.
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191s Selecting previously unselected package r-cran-evaluate.
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191s Selecting previously unselected package r-cran-xfun.
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191s Selecting previously unselected package r-cran-highr.
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191s Selecting previously unselected package r-cran-yaml.
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191s Selecting previously unselected package libjs-mathjax.
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191s Selecting previously unselected package r-cran-knitr.
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191s Selecting previously unselected package r-cran-cachem.
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191s Selecting previously unselected package r-cran-jquerylib.
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191s Selecting previously unselected package r-cran-jsonlite.
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191s Selecting previously unselected package r-cran-glue.
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191s Selecting previously unselected package r-cran-memoise.
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191s Selecting previously unselected package r-cran-tinytex.
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191s Selecting previously unselected package libjs-modernizr.
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191s Selecting previously unselected package r-cran-pkgkitten.
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192s Selecting previously unselected package r-cran-magrittr.
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192s Selecting previously unselected package r-cran-promises.
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192s Selecting previously unselected package r-cran-httpuv.
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192s Selecting previously unselected package r-cran-xtable.
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192s Selecting previously unselected package r-cran-crayon.
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192s Selecting previously unselected package r-cran-withr.
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192s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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192s Selecting previously unselected package r-cran-shiny.
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192s Selecting previously unselected package r-cran-rmarkdown.
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192s Selecting previously unselected package r-cran-biocmanager.
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197s Selecting previously unselected package r-cran-bh.
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197s Setting up libjs-json (0~20221030+~1.0.8-1) ...
197s Setting up javascript-common (12) ...
197s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
197s Setting up libpixman-1-0:s390x (0.44.0-3) ...
197s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
197s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
197s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
197s Setting up libxpm4:s390x (1:3.5.17-1build2) ...
197s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
197s Setting up libxi6:s390x (2:1.8.2-1) ...
197s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
197s Setting up libdatrie1:s390x (0.2.13-3build1) ...
197s Setting up libjs-popper.js (1.16.1+ds-6) ...
197s Setting up libxcb-render0:s390x (1.17.0-2) ...
197s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
197s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
197s Setting up libjs-lunr (2.3.9~dfsg-2) ...
197s Setting up unzip (6.0-28ubuntu6) ...
197s Setting up liblatex-tounicode-perl (0.55-1) ...
197s Setting up x11-common (1:7.7+23ubuntu3) ...
197s Setting up node-html5shiv (3.7.3+dfsg-5) ...
197s Setting up libdeflate0:s390x (1.23-1) ...
197s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
197s Setting up libxcb-shm0:s390x (1.17.0-2) ...
197s Setting up libreadline-dev:s390x (8.2-6) ...
197s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
197s Setting up libjs-modernizr (3.13.0-0.1) ...
197s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
197s Setting up libpcre2-16-0:s390x (10.45-1) ...
197s Setting up libjs-es5-shim (4.6.7-2) ...
197s Setting up tex-common (6.19) ...
197s update-language: texlive-base not installed and configured, doing nothing!
197s Setting up libio-string-perl (1.08-4) ...
197s Setting up zip (3.0-14ubuntu2) ...
197s Setting up libpcre2-32-0:s390x (10.45-1) ...
197s Setting up libblas3:s390x (3.12.1-2) ...
197s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
197s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
197s Setting up libpkgconf3:s390x (1.8.1-4) ...
197s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
197s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
197s Setting up libteckit0:s390x (2.5.12+ds1-1) ...
197s Setting up t1utils (1.41-4build3) ...
197s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
197s Setting up libjs-d3 (3.5.17-4) ...
197s Setting up fonts-dejavu-mono (2.37-8) ...
197s Setting up libmpc3:s390x (1.3.1-1build2) ...
197s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
197s Setting up libmpfi0:s390x (1.5.4+ds-4) ...
197s Setting up icu-devtools (76.1-1ubuntu2) ...
197s Setting up fonts-dejavu-core (2.37-8) ...
197s Setting up pkgconf-bin (1.8.1-4) ...
197s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
197s Setting up libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
197s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
197s Setting up libwebp7:s390x (1.5.0-0.1) ...
197s Setting up liblzma-dev:s390x (5.6.4-1) ...
197s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
197s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
197s Setting up libpcre2-posix3:s390x (10.45-1) ...
197s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
197s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
197s Setting up fonts-lmodern (2.005-1) ...
197s Setting up liblua5.4-0:s390x (5.4.7-1) ...
197s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
197s Setting up libthai-data (0.1.29-2build1) ...
197s Setting up node-bootstrap-sass (3.4.3-2) ...
197s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
197s Setting up libxss1:s390x (1:1.2.3-1build3) ...
197s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
197s Setting up libpaper2:s390x (2.2.5-0.3) ...
197s Setting up pandoc-data (3.1.11.1-3build1) ...
197s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
197s Setting up libisl23:s390x (0.27-1) ...
197s Setting up libdeflate-dev:s390x (1.23-1) ...
197s Setting up node-normalize.css (8.0.1-5) ...
197s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
197s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
197s Setting up xdg-utils (1.2.1-2ubuntu1) ...
197s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
197s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
197s Setting up libblas-dev:s390x (3.12.1-2) ...
197s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
197s Setting up dctrl-tools (2.24-3build3) ...
197s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
197s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
197s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
197s Setting up libbz2-dev:s390x (1.0.8-6) ...
197s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
197s Setting up libpotrace0:s390x (1.16-2build1) ...
197s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
197s Setting up libice6:s390x (2:1.1.1-1) ...
197s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
197s Setting up liblapack3:s390x (3.12.1-2) ...
197s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
197s Setting up libpcre2-dev:s390x (10.45-1) ...
197s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
198s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
198s Setting up libpng-dev:s390x (1.6.47-1) ...
198s Setting up libpaper-utils (2.2.5-0.3) ...
198s Setting up libbibtex-parser-perl (1.05+dfsg-1) ...
198s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
198s Setting up pkgconf:s390x (1.8.1-4) ...
198s Setting up libthai0:s390x (0.1.29-2build1) ...
198s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
198s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
198s Setting up pandoc (3.1.11.1+ds-2) ...
198s Setting up liblapack-dev:s390x (3.12.1-2) ...
198s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
198s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
198s Setting up cpp-14 (14.2.0-17ubuntu3) ...
198s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
198s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
198s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
198s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
198s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
198s Setting up libsm6:s390x (2:1.2.4-1) ...
198s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
198s Setting up fontconfig (2.15.0-2ubuntu1) ...
200s Regenerating fonts cache... done.
200s Setting up libxft2:s390x (2.3.6-1build1) ...
200s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
200s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
200s Setting up libtk8.6:s390x (8.6.16-1) ...
200s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
200s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
200s Setting up libcairo2:s390x (1.18.2-2) ...
200s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
200s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
200s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
200s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
200s Setting up cpp (4:14.2.0-1ubuntu1) ...
200s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
200s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
200s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
200s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
200s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
200s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
200s Setting up libxaw7:s390x (2:1.0.16-1) ...
200s Setting up gcc-14 (14.2.0-17ubuntu3) ...
200s Setting up r-base-core (4.4.3-1) ...
200s Creating config file /etc/R/Renviron with new version
200s Setting up r-cran-crayon (1.5.3-1) ...
200s Setting up r-cran-sourcetools (0.1.7-1-1) ...
200s Setting up r-cran-xml (3.99-0.18-1) ...
200s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
200s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
200s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
200s Setting up r-cran-cluster (2.1.8-1) ...
200s Setting up r-cran-sparsem (1.84-2-1) ...
200s Setting up r-cran-commonmark (1.9.2-2) ...
200s Setting up g++-14 (14.2.0-17ubuntu3) ...
200s Setting up r-cran-r6 (2.6.1-1) ...
200s Setting up r-cran-pkgkitten (0.2.4-1) ...
200s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
200s Setting up texlive-base (2024.20250114-1) ...
200s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
200s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
200s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
201s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
201s Setting up r-cran-magrittr (2.0.3-1) ...
201s Setting up r-cran-rappdirs (0.3.3-1) ...
201s Setting up r-cran-littler (0.3.20-2) ...
201s Setting up r-cran-bh (1.84.0-1) ...
201s Setting up r-cran-fs (1.6.5+dfsg-1) ...
201s Setting up r-cran-rcpp (1.0.14-1) ...
201s Setting up r-bioc-biocgenerics (0.52.0-2) ...
201s Setting up r-cran-rlang (1.1.5-1) ...
201s Setting up littler (0.3.20-2) ...
201s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
201s Setting up r-cran-xfun (0.51+dfsg-1) ...
201s Setting up r-cran-withr (3.0.2+dfsg-1) ...
201s Setting up r-cran-mime (0.12-2) ...
201s Setting up r-cran-base64enc (0.1-3-3) ...
201s Setting up r-cran-digest (0.6.37-1) ...
201s Setting up r-cran-yaml (2.3.10-1) ...
201s Setting up r-cran-evaluate (1.0.3-1) ...
201s Setting up r-cran-highr (0.11+dfsg-1) ...
201s Setting up r-cran-glue (1.8.0-1) ...
201s Setting up r-cran-xtable (1:1.8-4-2) ...
201s Setting up r-cran-cli (3.6.4-1) ...
201s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
201s Setting up r-bioc-biocversion (3.20.0-2) ...
201s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
201s Setting up gcc (4:14.2.0-1ubuntu1) ...
201s Setting up r-cran-fastmap (1.2.0-1) ...
201s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
201s Setting up texlive-latex-base (2024.20250114-1) ...
201s Setting up r-cran-runit (0.4.33-1) ...
201s Setting up r-cran-later (1.4.1+dfsg-1) ...
201s Setting up r-cran-htmltools (0.5.8.1-1) ...
201s Setting up r-cran-tinytex (0.56-1) ...
201s Setting up r-cran-knitr (1.49+dfsg-1) ...
201s Setting up g++ (4:14.2.0-1ubuntu1) ...
201s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
201s Setting up r-cran-cachem (1.1.0-1) ...
201s Setting up r-cran-sass (0.4.9+dfsg-1) ...
201s Setting up build-essential (12.10ubuntu1) ...
201s Setting up r-bioc-graph (1.84.1-1) ...
201s Setting up r-bioc-rbgl (1.82.0+dfsg-2) ...
201s Setting up r-cran-fontawesome (0.5.3-1) ...
201s Setting up gfortran (4:14.2.0-1ubuntu1) ...
201s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
201s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
201s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
201s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
201s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
201s Setting up texlive-bibtex-extra (2024.20250114-1) ...
201s Setting up r-cran-memoise (2.0.1-1) ...
201s Setting up r-cran-promises (1.3.2+dfsg-1) ...
201s Setting up r-base-dev (4.4.3-1) ...
201s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
201s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
201s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
201s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
201s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
201s Setting up r-cran-bookdown (0.42+dfsg-1) ...
201s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
201s Processing triggers for libc-bin (2.41-1ubuntu2) ...
201s Processing triggers for man-db (2.13.0-1) ...
202s Processing triggers for install-info (7.1.1-1) ...
202s Processing triggers for tex-common (6.19) ...
202s Running updmap-sys. This may take some time... done.
202s Running mktexlsr /var/lib/texmf ... done.
202s Building format(s) --all.
247s 	This may take some time... done.
248s autopkgtest [17:48:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
248s autopkgtest [17:48:05]: test pkg-r-autopkgtest: [-----------------------
248s Test: Try to load the R library graph
248s 
248s R version 4.4.3 (2025-02-28) -- "Trophy Case"
248s Copyright (C) 2025 The R Foundation for Statistical Computing
248s Platform: s390x-ibm-linux-gnu
248s 
248s R is free software and comes with ABSOLUTELY NO WARRANTY.
248s You are welcome to redistribute it under certain conditions.
248s Type 'license()' or 'licence()' for distribution details.
248s 
248s R is a collaborative project with many contributors.
248s Type 'contributors()' for more information and
248s 'citation()' on how to cite R or R packages in publications.
248s 
248s Type 'demo()' for some demos, 'help()' for on-line help, or
248s 'help.start()' for an HTML browser interface to help.
248s Type 'q()' to quit R.
248s 
248s > library('graph')
248s Loading required package: BiocGenerics
248s 
248s Attaching package: ‘BiocGenerics’
248s 
248s The following objects are masked from ‘package:stats’:
248s 
248s     IQR, mad, sd, var, xtabs
248s 
248s The following objects are masked from ‘package:base’:
248s 
248s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
248s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
248s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
248s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
248s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
248s     table, tapply, union, unique, unsplit, which.max, which.min
248s 
248s > 
248s > 
248s Other tests are currently unsupported!
248s They will be progressively added.
249s autopkgtest [17:48:06]: test pkg-r-autopkgtest: -----------------------]
249s autopkgtest [17:48:06]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
249s pkg-r-autopkgtest    PASS
249s autopkgtest [17:48:06]: @@@@@@@@@@@@@@@@@@@@ summary
249s pkg-r-autopkgtest    PASS
266s nova [W] Using flock in prodstack6-s390x
266s Creating nova instance adt-plucky-s390x-r-bioc-graph-20250315-174356-juju-7f2275-prod-proposed-migration-environment-20-507fdd8f-29d9-4420-9d10-4854447484b7 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
266s nova [W] Timed out waiting for a402b5e7-a6d1-4e0f-8bad-54a95227d4b3 to get deleted.