7s autopkgtest [17:43:46]: starting date and time: 2025-03-15 17:43:46+0000 9s autopkgtest [17:43:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 9s autopkgtest [17:43:48]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r0wgoptp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-genomicalignments --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-3.secgroup --name adt-plucky-s390x-r-bioc-genomicalignments-20250315-174333-juju-7f2275-prod-proposed-migration-environment-15-7e333a30-f54a-4fe3-b63d-2ba5fd3bcb21 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 130s autopkgtest [17:45:49]: testbed dpkg architecture: s390x 130s autopkgtest [17:45:49]: testbed apt version: 2.9.33 131s autopkgtest [17:45:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 131s autopkgtest [17:45:50]: testbed release detected to be: None 132s autopkgtest [17:45:51]: updating testbed package index (apt update) 132s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 132s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 133s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 133s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 133s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 133s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 133s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 133s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 133s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 133s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 133s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 134s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 134s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 134s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 134s Fetched 1073 kB in 2s (639 kB/s) 134s Reading package lists... 135s + lsb_release --codename --short 135s + RELEASE=plucky 135s + cat 135s + [ plucky != trusty ] 135s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s Calculating upgrade... 135s Calculating upgrade... 135s The following packages were automatically installed and are no longer required: 135s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 135s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 135s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 135s linux-tools-6.11.0-8-generic 135s Use 'sudo apt autoremove' to remove them. 135s The following packages will be upgraded: 135s pinentry-curses python3-jinja2 strace 136s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Need to get 652 kB of archives. 136s After this operation, 27.6 kB of additional disk space will be used. 136s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 136s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 136s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 137s Fetched 652 kB in 1s (736 kB/s) 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 137s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 137s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 137s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 137s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 137s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 137s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 137s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 137s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 137s Setting up strace (6.13+ds-1ubuntu1) ... 137s Processing triggers for man-db (2.13.0-1) ... 138s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 138s + /usr/lib/apt/apt-helper analyze-pattern ?true 138s + uname -r 138s + sed s/\./\\./g 138s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 138s + apt list ?obsolete 138s + tail -n+2 138s + cut -d/ -f1 138s + grep -v ^linux-.*6\.14\.0-10-generic.* 138s + obsolete_pkgs=linux-headers-6.11.0-8-generic 138s linux-headers-6.11.0-8 138s linux-modules-6.11.0-8-generic 138s linux-tools-6.11.0-8-generic 138s linux-tools-6.11.0-8 138s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Solving dependencies... 138s The following packages will be REMOVED: 138s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 138s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 138s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 138s linux-tools-6.11.0-8-generic* 138s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 138s After this operation, 167 MB disk space will be freed. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 138s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 138s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 138s Removing libpython3.12t64:s390x (3.12.9-1) ... 138s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 138s Removing libnsl2:s390x (1.3.0-3build3) ... 138s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 138s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 138s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 140s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 140s Processing triggers for libc-bin (2.41-1ubuntu1) ... 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 140s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 140s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 140s + grep -q trusty /etc/lsb-release 140s + [ ! -d /usr/share/doc/unattended-upgrades ] 140s + [ ! -d /usr/share/doc/lxd ] 140s + [ ! -d /usr/share/doc/lxd-client ] 140s + [ ! -d /usr/share/doc/snapd ] 140s + type iptables 140s + cat 140s + chmod 755 /etc/rc.local 140s + . /etc/rc.local 140s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 140s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 140s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 140s + uname -m 140s + [ s390x = ppc64le ] 140s + [ -d /run/systemd/system ] 140s + systemd-detect-virt --quiet --vm 140s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 140s + cat 140s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 140s + echo COMPRESS=lz4 140s autopkgtest [17:45:59]: upgrading testbed (apt dist-upgrade and autopurge) 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 140s Starting 2 pkgProblemResolver with broken count: 0 140s Done 141s Entering ResolveByKeep 141s 141s Calculating upgrade... 141s The following packages will be upgraded: 141s libc-bin libc-dev-bin libc6 libc6-dev locales 141s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Need to get 9512 kB of archives. 141s After this operation, 8192 B of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 143s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 143s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 146s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 152s Preconfiguring packages ... 152s Fetched 9512 kB in 10s (912 kB/s) 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 152s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 152s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 152s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 152s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Setting up libc6:s390x (2.41-1ubuntu2) ... 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 152s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 152s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Setting up libc-bin (2.41-1ubuntu2) ... 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 152s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 152s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Setting up locales (2.41-1ubuntu2) ... 153s Generating locales (this might take a while)... 155s en_US.UTF-8... done 155s Generation complete. 155s Setting up libc-dev-bin (2.41-1ubuntu2) ... 155s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 155s Processing triggers for man-db (2.13.0-1) ... 155s Processing triggers for systemd (257.3-1ubuntu3) ... 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Starting pkgProblemResolver with broken count: 0 156s Starting 2 pkgProblemResolver with broken count: 0 156s Done 156s Solving dependencies... 156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s autopkgtest [17:46:15]: rebooting testbed after setup commands that affected boot 176s autopkgtest [17:46:35]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 179s autopkgtest [17:46:38]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicalignments 183s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (dsc) [2451 B] 183s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (tar) [2273 kB] 183s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-genomicalignments 1.42.0-2 (diff) [7800 B] 183s gpgv: Signature made Mon Jan 13 08:01:02 2025 UTC 183s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 183s gpgv: issuer "crusoe@debian.org" 183s gpgv: Can't check signature: No public key 183s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicalignments_1.42.0-2.dsc: no acceptable signature found 183s autopkgtest [17:46:42]: testing package r-bioc-genomicalignments version 1.42.0-2 183s autopkgtest [17:46:42]: build not needed 193s autopkgtest [17:46:52]: test pkg-r-autopkgtest: preparing testbed 194s Reading package lists... 194s Building dependency tree... 194s Reading state information... 194s Starting pkgProblemResolver with broken count: 0 194s Starting 2 pkgProblemResolver with broken count: 0 194s Done 194s The following NEW packages will be installed: 194s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 194s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 194s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 194s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 194s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 194s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 194s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 194s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 194s libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev 194s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 194s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 194s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 194s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 194s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 194s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 194s libjs-popper.js libjs-prettify libjs-sifter.js 194s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 194s liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libmpfi0 194s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 194s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 194s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 194s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 194s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 194s libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 194s libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 194s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 194s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 194s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 194s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 194s r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-edger 194s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 194s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 194s r-bioc-limma r-bioc-matrixgenerics r-bioc-pwalign r-bioc-rhtslib 194s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 194s r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment 194s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass 194s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 194s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem 194s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 194s r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-digest 194s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 194s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 194s r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools 194s r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-interp r-cran-isoband 194s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 194s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 194s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 194s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 194s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig 194s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises r-cran-r6 194s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 194s r-cran-rcppeigen r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang 194s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-scales 194s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-sys 194s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite 194s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils 194s tex-common texlive-base texlive-bibtex-extra texlive-binaries 194s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 194s 0 upgraded, 280 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 466 MB of archives. 194s After this operation, 1481 MB of additional disk space will be used. 194s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 195s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 203s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 203s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 203s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 204s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 204s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 204s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 204s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 206s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 208s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 209s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 225s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 226s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 226s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 226s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 228s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 238s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 238s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 238s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 238s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 238s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 238s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 238s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 239s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 239s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 239s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 240s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 240s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 240s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 240s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 244s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 245s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 245s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 246s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 253s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 253s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 253s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 253s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 253s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B] 253s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB] 253s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB] 253s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 253s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 254s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 254s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB] 265s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 265s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 265s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 265s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 265s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 265s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 265s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 266s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 266s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 266s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 266s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 266s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 267s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 267s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 267s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 280s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 280s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 281s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 281s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 281s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 281s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 281s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 281s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 281s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 282s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 282s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 282s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 282s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 283s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 283s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 283s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 283s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 283s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 283s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 283s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 283s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB] 283s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 286s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 292s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 292s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB] 292s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 293s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 293s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 293s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 293s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 293s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 293s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 293s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 293s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 293s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 294s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 294s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 295s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 295s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 295s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 296s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB] 296s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB] 296s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 296s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 296s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 296s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB] 296s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 297s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 297s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB] 298s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 298s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 298s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 298s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 298s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 298s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 299s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 299s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 299s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB] 299s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB] 299s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 299s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB] 299s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 299s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 300s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 300s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 325s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 325s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 325s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 325s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 325s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 325s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 325s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 372s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 373s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 373s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 373s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 373s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 373s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 373s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 373s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 376s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 377s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 379s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB] 380s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB] 380s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB] 381s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 383s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 384s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 384s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 385s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 386s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 386s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 386s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 386s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 386s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 386s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 386s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 386s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB] 387s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 387s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 388s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 388s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 388s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 388s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 388s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 388s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 389s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 389s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 389s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 389s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 389s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 401s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 404s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 404s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 417s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 417s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 422s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 422s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB] 422s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 422s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 422s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 422s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 422s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB] 422s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 422s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB] 424s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 424s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 424s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 424s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 425s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 425s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 425s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 425s Get:195 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 431s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 432s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 432s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 432s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 432s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 433s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 438s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB] 439s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB] 440s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 440s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 440s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 443s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 443s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 443s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 443s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 443s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 444s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 444s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 444s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 444s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 444s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 448s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 449s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 451s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 451s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB] 451s Get:221 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB] 451s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB] 460s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB] 481s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB] 482s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 551s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB] 551s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 551s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB] 554s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 555s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 555s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB] 557s Get:232 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB] 561s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB] 562s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 562s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 563s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 568s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 568s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB] 569s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB] 570s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB] 573s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 574s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB] 576s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 577s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB] 577s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 577s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB] 583s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-bsgenome all 1.74.0-2 [7001 kB] 590s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-locfit s390x 1.5-9.12-1 [539 kB] 591s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 592s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB] 593s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB] 595s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB] 597s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 600s Get:254 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-farver s390x 2.1.2-1 [1353 kB] 602s Get:255 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB] 602s Get:256 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-colorspace s390x 2.1-1+dfsg-1 [1567 kB] 604s Get:257 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-munsell all 0.5.1-1 [213 kB] 604s Get:258 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 604s Get:259 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB] 606s Get:260 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-scales all 1.3.0-1 [603 kB] 606s Get:261 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 607s Get:262 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 607s Get:263 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 608s Get:264 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB] 609s Get:265 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 613s Get:266 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpparmadillo s390x 14.2.3-1-1 [851 kB] 614s Get:267 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-deseq2 s390x 1.46.0+dfsg-2 [1246 kB] 616s Get:268 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 616s Get:269 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB] 618s Get:270 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-edger s390x 4.4.2+dfsg-1 [1125 kB] 619s Get:271 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 620s Get:272 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-pwalign s390x 1.2.0-2 [750 kB] 621s Get:273 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hwriter all 1.3.2.1-1 [106 kB] 622s Get:274 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB] 622s Get:275 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-deldir s390x 2.0-4-1build1 [271 kB] 622s Get:276 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcppeigen s390x 0.3.4.0.2-1 [1429 kB] 624s Get:277 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB] 626s Get:278 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB] 628s Get:279 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-shortread s390x 1.64.0-3 [5288 kB] 634s Get:280 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB] 635s Preconfiguring packages ... 636s Fetched 466 MB in 7min 20s (1059 kB/s) 636s Selecting previously unselected package libisl23:s390x. 636s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 636s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 636s Unpacking libisl23:s390x (0.27-1) ... 636s Selecting previously unselected package libmpc3:s390x. 636s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 636s Unpacking libmpc3:s390x (1.3.1-1build2) ... 636s Selecting previously unselected package cpp-14-s390x-linux-gnu. 636s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 636s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 636s Selecting previously unselected package cpp-14. 636s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 636s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 636s Selecting previously unselected package cpp-s390x-linux-gnu. 636s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 636s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 636s Selecting previously unselected package cpp. 636s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 636s Unpacking cpp (4:14.2.0-1ubuntu1) ... 636s Selecting previously unselected package libcc1-0:s390x. 636s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 636s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 636s Selecting previously unselected package libgomp1:s390x. 636s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 636s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 636s Selecting previously unselected package libitm1:s390x. 636s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ... 636s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 636s Selecting previously unselected package libasan8:s390x. 636s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ... 636s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 636s Selecting previously unselected package libubsan1:s390x. 636s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 636s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 636s Selecting previously unselected package libgcc-14-dev:s390x. 636s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 636s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 636s Selecting previously unselected package gcc-14-s390x-linux-gnu. 636s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 636s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 636s Selecting previously unselected package gcc-14. 636s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 636s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 636s Selecting previously unselected package gcc-s390x-linux-gnu. 636s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 636s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 636s Selecting previously unselected package gcc. 636s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 636s Unpacking gcc (4:14.2.0-1ubuntu1) ... 636s Selecting previously unselected package libstdc++-14-dev:s390x. 636s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 636s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 637s Selecting previously unselected package g++-14-s390x-linux-gnu. 637s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 637s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 637s Selecting previously unselected package g++-14. 637s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ... 637s Unpacking g++-14 (14.2.0-17ubuntu3) ... 637s Selecting previously unselected package g++-s390x-linux-gnu. 637s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 637s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 637s Selecting previously unselected package g++. 637s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 637s Unpacking g++ (4:14.2.0-1ubuntu1) ... 637s Selecting previously unselected package build-essential. 637s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ... 637s Unpacking build-essential (12.10ubuntu1) ... 637s Selecting previously unselected package dctrl-tools. 637s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 637s Unpacking dctrl-tools (2.24-3build3) ... 637s Selecting previously unselected package libfreetype6:s390x. 637s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 637s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 637s Selecting previously unselected package fonts-dejavu-mono. 637s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 637s Unpacking fonts-dejavu-mono (2.37-8) ... 637s Selecting previously unselected package fonts-dejavu-core. 637s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 637s Unpacking fonts-dejavu-core (2.37-8) ... 637s Selecting previously unselected package fontconfig-config. 637s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 637s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 637s Selecting previously unselected package libfontconfig1:s390x. 637s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 637s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 637s Selecting previously unselected package fontconfig. 637s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 637s Unpacking fontconfig (2.15.0-2ubuntu1) ... 637s Selecting previously unselected package fonts-font-awesome. 637s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 637s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 637s Selecting previously unselected package fonts-glyphicons-halflings. 637s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 637s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 637s Selecting previously unselected package fonts-lmodern. 637s Preparing to unpack .../031-fonts-lmodern_2.005-1_all.deb ... 637s Unpacking fonts-lmodern (2.005-1) ... 637s Selecting previously unselected package fonts-mathjax. 637s Preparing to unpack .../032-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 637s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 637s Selecting previously unselected package libgfortran5:s390x. 637s Preparing to unpack .../033-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 637s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 637s Selecting previously unselected package libgfortran-14-dev:s390x. 637s Preparing to unpack .../034-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 637s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 637s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 637s Preparing to unpack .../035-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 637s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 637s Selecting previously unselected package gfortran-14. 637s Preparing to unpack .../036-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 637s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 637s Selecting previously unselected package gfortran-s390x-linux-gnu. 637s Preparing to unpack .../037-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 637s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 637s Selecting previously unselected package gfortran. 637s Preparing to unpack .../038-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 637s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 637s Selecting previously unselected package icu-devtools. 637s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_s390x.deb ... 637s Unpacking icu-devtools (76.1-1ubuntu2) ... 637s Selecting previously unselected package javascript-common. 637s Preparing to unpack .../040-javascript-common_12_all.deb ... 637s Unpacking javascript-common (12) ... 637s Selecting previously unselected package libio-string-perl. 638s Preparing to unpack .../041-libio-string-perl_1.08-4_all.deb ... 638s Unpacking libio-string-perl (1.08-4) ... 638s Selecting previously unselected package liblatex-tounicode-perl. 638s Preparing to unpack .../042-liblatex-tounicode-perl_0.55-1_all.deb ... 638s Unpacking liblatex-tounicode-perl (0.55-1) ... 638s Selecting previously unselected package libbibtex-parser-perl. 638s Preparing to unpack .../043-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 638s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 638s Selecting previously unselected package libblas3:s390x. 638s Preparing to unpack .../044-libblas3_3.12.1-2_s390x.deb ... 638s Unpacking libblas3:s390x (3.12.1-2) ... 638s Selecting previously unselected package libblas-dev:s390x. 638s Preparing to unpack .../045-libblas-dev_3.12.1-2_s390x.deb ... 638s Unpacking libblas-dev:s390x (3.12.1-2) ... 638s Selecting previously unselected package libboost1.83-dev:s390x. 638s Preparing to unpack .../046-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ... 638s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 639s Selecting previously unselected package libboost-dev:s390x. 639s Preparing to unpack .../047-libboost-dev_1.83.0.2ubuntu1_s390x.deb ... 639s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ... 639s Selecting previously unselected package libbz2-dev:s390x. 639s Preparing to unpack .../048-libbz2-dev_1.0.8-6_s390x.deb ... 639s Unpacking libbz2-dev:s390x (1.0.8-6) ... 639s Selecting previously unselected package libpixman-1-0:s390x. 639s Preparing to unpack .../049-libpixman-1-0_0.44.0-3_s390x.deb ... 639s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 639s Selecting previously unselected package libxcb-render0:s390x. 639s Preparing to unpack .../050-libxcb-render0_1.17.0-2_s390x.deb ... 639s Unpacking libxcb-render0:s390x (1.17.0-2) ... 639s Selecting previously unselected package libxcb-shm0:s390x. 639s Preparing to unpack .../051-libxcb-shm0_1.17.0-2_s390x.deb ... 639s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 639s Selecting previously unselected package libxrender1:s390x. 639s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 639s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 639s Selecting previously unselected package libcairo2:s390x. 639s Preparing to unpack .../053-libcairo2_1.18.2-2_s390x.deb ... 639s Unpacking libcairo2:s390x (1.18.2-2) ... 639s Selecting previously unselected package libdatrie1:s390x. 639s Preparing to unpack .../054-libdatrie1_0.2.13-3build1_s390x.deb ... 639s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 639s Selecting previously unselected package libdeflate0:s390x. 639s Preparing to unpack .../055-libdeflate0_1.23-1_s390x.deb ... 639s Unpacking libdeflate0:s390x (1.23-1) ... 639s Selecting previously unselected package libdeflate-dev:s390x. 639s Preparing to unpack .../056-libdeflate-dev_1.23-1_s390x.deb ... 639s Unpacking libdeflate-dev:s390x (1.23-1) ... 639s Selecting previously unselected package libgraphite2-3:s390x. 639s Preparing to unpack .../057-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 639s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 639s Selecting previously unselected package libharfbuzz0b:s390x. 639s Preparing to unpack .../058-libharfbuzz0b_10.2.0-1_s390x.deb ... 639s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 639s Selecting previously unselected package x11-common. 639s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu3_all.deb ... 639s Unpacking x11-common (1:7.7+23ubuntu3) ... 639s Selecting previously unselected package libice6:s390x. 639s Preparing to unpack .../060-libice6_2%3a1.1.1-1_s390x.deb ... 639s Unpacking libice6:s390x (2:1.1.1-1) ... 639s Selecting previously unselected package libicu-dev:s390x. 639s Preparing to unpack .../061-libicu-dev_76.1-1ubuntu2_s390x.deb ... 639s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 639s Selecting previously unselected package libjpeg-turbo8:s390x. 639s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 639s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 639s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 639s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 639s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 639s Selecting previously unselected package libjpeg8:s390x. 639s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_s390x.deb ... 639s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 639s Selecting previously unselected package libjpeg8-dev:s390x. 639s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 639s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 639s Selecting previously unselected package libjpeg-dev:s390x. 639s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 639s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 639s Selecting previously unselected package libjs-bootstrap. 639s Preparing to unpack .../067-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 639s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 639s Selecting previously unselected package libjs-popper.js. 639s Preparing to unpack .../068-libjs-popper.js_1.16.1+ds-6_all.deb ... 639s Unpacking libjs-popper.js (1.16.1+ds-6) ... 639s Selecting previously unselected package libjs-bootstrap4. 639s Preparing to unpack .../069-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 639s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 639s Selecting previously unselected package libjs-d3. 639s Preparing to unpack .../070-libjs-d3_3.5.17-4_all.deb ... 639s Unpacking libjs-d3 (3.5.17-4) ... 639s Selecting previously unselected package libjs-es5-shim. 639s Preparing to unpack .../071-libjs-es5-shim_4.6.7-2_all.deb ... 639s Unpacking libjs-es5-shim (4.6.7-2) ... 639s Selecting previously unselected package libjs-highlight.js. 639s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 639s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 639s Selecting previously unselected package libjs-jquery. 639s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 639s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 639s Selecting previously unselected package libjs-jquery-datatables. 639s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 639s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 639s Selecting previously unselected package libjs-sifter.js. 639s Preparing to unpack .../075-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 639s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 639s Selecting previously unselected package libjs-microplugin.js. 639s Preparing to unpack .../076-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 639s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 639s Selecting previously unselected package libjs-jquery-selectize.js. 639s Preparing to unpack .../077-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 639s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 639s Selecting previously unselected package libjs-jquery-ui. 639s Preparing to unpack .../078-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 639s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 639s Selecting previously unselected package libjs-json. 639s Preparing to unpack .../079-libjs-json_0~20221030+~1.0.8-1_all.deb ... 639s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 640s Selecting previously unselected package libjs-lunr. 640s Preparing to unpack .../080-libjs-lunr_2.3.9~dfsg-2_all.deb ... 640s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 640s Selecting previously unselected package libjs-prettify. 640s Preparing to unpack .../081-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 640s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 640s Selecting previously unselected package libkpathsea6:s390x. 640s Preparing to unpack .../082-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ... 640s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ... 640s Selecting previously unselected package liblapack3:s390x. 640s Preparing to unpack .../083-liblapack3_3.12.1-2_s390x.deb ... 640s Unpacking liblapack3:s390x (3.12.1-2) ... 640s Selecting previously unselected package liblapack-dev:s390x. 640s Preparing to unpack .../084-liblapack-dev_3.12.1-2_s390x.deb ... 640s Unpacking liblapack-dev:s390x (3.12.1-2) ... 640s Selecting previously unselected package liblua5.4-0:s390x. 640s Preparing to unpack .../085-liblua5.4-0_5.4.7-1_s390x.deb ... 640s Unpacking liblua5.4-0:s390x (5.4.7-1) ... 640s Selecting previously unselected package libmpfi0:s390x. 640s Preparing to unpack .../086-libmpfi0_1.5.4+ds-4_s390x.deb ... 640s Unpacking libmpfi0:s390x (1.5.4+ds-4) ... 640s Selecting previously unselected package libncurses-dev:s390x. 640s Preparing to unpack .../087-libncurses-dev_6.5+20250216-2_s390x.deb ... 640s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 640s Selecting previously unselected package libthai-data. 640s Preparing to unpack .../088-libthai-data_0.1.29-2build1_all.deb ... 640s Unpacking libthai-data (0.1.29-2build1) ... 640s Selecting previously unselected package libthai0:s390x. 640s Preparing to unpack .../089-libthai0_0.1.29-2build1_s390x.deb ... 640s Unpacking libthai0:s390x (0.1.29-2build1) ... 640s Selecting previously unselected package libpango-1.0-0:s390x. 640s Preparing to unpack .../090-libpango-1.0-0_1.56.2-1_s390x.deb ... 640s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 640s Selecting previously unselected package libpangoft2-1.0-0:s390x. 640s Preparing to unpack .../091-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 640s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 640s Selecting previously unselected package libpangocairo-1.0-0:s390x. 640s Preparing to unpack .../092-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 640s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 640s Selecting previously unselected package libpaper2:s390x. 640s Preparing to unpack .../093-libpaper2_2.2.5-0.3_s390x.deb ... 640s Unpacking libpaper2:s390x (2.2.5-0.3) ... 640s Selecting previously unselected package libpaper-utils. 640s Preparing to unpack .../094-libpaper-utils_2.2.5-0.3_s390x.deb ... 640s Unpacking libpaper-utils (2.2.5-0.3) ... 640s Selecting previously unselected package libpcre2-16-0:s390x. 640s Preparing to unpack .../095-libpcre2-16-0_10.45-1_s390x.deb ... 640s Unpacking libpcre2-16-0:s390x (10.45-1) ... 640s Selecting previously unselected package libpcre2-32-0:s390x. 640s Preparing to unpack .../096-libpcre2-32-0_10.45-1_s390x.deb ... 640s Unpacking libpcre2-32-0:s390x (10.45-1) ... 640s Selecting previously unselected package libpcre2-posix3:s390x. 640s Preparing to unpack .../097-libpcre2-posix3_10.45-1_s390x.deb ... 640s Unpacking libpcre2-posix3:s390x (10.45-1) ... 640s Selecting previously unselected package libpcre2-dev:s390x. 640s Preparing to unpack .../098-libpcre2-dev_10.45-1_s390x.deb ... 640s Unpacking libpcre2-dev:s390x (10.45-1) ... 640s Selecting previously unselected package libpkgconf3:s390x. 640s Preparing to unpack .../099-libpkgconf3_1.8.1-4_s390x.deb ... 640s Unpacking libpkgconf3:s390x (1.8.1-4) ... 640s Selecting previously unselected package zlib1g-dev:s390x. 640s Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 640s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 640s Selecting previously unselected package libpng-dev:s390x. 640s Preparing to unpack .../101-libpng-dev_1.6.47-1_s390x.deb ... 640s Unpacking libpng-dev:s390x (1.6.47-1) ... 640s Selecting previously unselected package libpotrace0:s390x. 640s Preparing to unpack .../102-libpotrace0_1.16-2build1_s390x.deb ... 640s Unpacking libpotrace0:s390x (1.16-2build1) ... 640s Selecting previously unselected package libptexenc1:s390x. 640s Preparing to unpack .../103-libptexenc1_2024.20240313.70630+ds-5build2_s390x.deb ... 640s Unpacking libptexenc1:s390x (2024.20240313.70630+ds-5build2) ... 640s Selecting previously unselected package libreadline-dev:s390x. 640s Preparing to unpack .../104-libreadline-dev_8.2-6_s390x.deb ... 640s Unpacking libreadline-dev:s390x (8.2-6) ... 640s Selecting previously unselected package libsharpyuv0:s390x. 640s Preparing to unpack .../105-libsharpyuv0_1.5.0-0.1_s390x.deb ... 640s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 640s Selecting previously unselected package libsm6:s390x. 640s Preparing to unpack .../106-libsm6_2%3a1.2.4-1_s390x.deb ... 640s Unpacking libsm6:s390x (2:1.2.4-1) ... 640s Selecting previously unselected package libsynctex2:s390x. 640s Preparing to unpack .../107-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ... 640s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ... 640s Selecting previously unselected package libtcl8.6:s390x. 640s Preparing to unpack .../108-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 640s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 640s Selecting previously unselected package libteckit0:s390x. 640s Preparing to unpack .../109-libteckit0_2.5.12+ds1-1_s390x.deb ... 640s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 640s Selecting previously unselected package libtexlua53-5:s390x. 640s Preparing to unpack .../110-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ... 640s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ... 640s Selecting previously unselected package libjbig0:s390x. 640s Preparing to unpack .../111-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 640s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 640s Selecting previously unselected package libwebp7:s390x. 640s Preparing to unpack .../112-libwebp7_1.5.0-0.1_s390x.deb ... 640s Unpacking libwebp7:s390x (1.5.0-0.1) ... 640s Selecting previously unselected package libtiff6:s390x. 640s Preparing to unpack .../113-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 640s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 640s Selecting previously unselected package libxft2:s390x. 640s Preparing to unpack .../114-libxft2_2.3.6-1build1_s390x.deb ... 640s Unpacking libxft2:s390x (2.3.6-1build1) ... 640s Selecting previously unselected package libxss1:s390x. 640s Preparing to unpack .../115-libxss1_1%3a1.2.3-1build3_s390x.deb ... 640s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 640s Selecting previously unselected package libtk8.6:s390x. 640s Preparing to unpack .../116-libtk8.6_8.6.16-1_s390x.deb ... 640s Unpacking libtk8.6:s390x (8.6.16-1) ... 640s Selecting previously unselected package libxt6t64:s390x. 640s Preparing to unpack .../117-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 640s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 640s Selecting previously unselected package libxmu6:s390x. 640s Preparing to unpack .../118-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 640s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 640s Selecting previously unselected package libxpm4:s390x. 640s Preparing to unpack .../119-libxpm4_1%3a3.5.17-1build2_s390x.deb ... 640s Unpacking libxpm4:s390x (1:3.5.17-1build2) ... 640s Selecting previously unselected package libxaw7:s390x. 640s Preparing to unpack .../120-libxaw7_2%3a1.0.16-1_s390x.deb ... 640s Unpacking libxaw7:s390x (2:1.0.16-1) ... 640s Selecting previously unselected package libxi6:s390x. 640s Preparing to unpack .../121-libxi6_2%3a1.8.2-1_s390x.deb ... 640s Unpacking libxi6:s390x (2:1.8.2-1) ... 640s Selecting previously unselected package libzzip-0-13t64:s390x. 640s Preparing to unpack .../122-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ... 640s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 640s Selecting previously unselected package zip. 640s Preparing to unpack .../123-zip_3.0-14ubuntu2_s390x.deb ... 640s Unpacking zip (3.0-14ubuntu2) ... 640s Selecting previously unselected package unzip. 640s Preparing to unpack .../124-unzip_6.0-28ubuntu6_s390x.deb ... 640s Unpacking unzip (6.0-28ubuntu6) ... 640s Selecting previously unselected package xdg-utils. 640s Preparing to unpack .../125-xdg-utils_1.2.1-2ubuntu1_all.deb ... 640s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 640s Selecting previously unselected package r-base-core. 640s Preparing to unpack .../126-r-base-core_4.4.3-1_s390x.deb ... 640s Unpacking r-base-core (4.4.3-1) ... 641s Selecting previously unselected package r-cran-littler. 641s Preparing to unpack .../127-r-cran-littler_0.3.20-2_s390x.deb ... 641s Unpacking r-cran-littler (0.3.20-2) ... 641s Selecting previously unselected package littler. 641s Preparing to unpack .../128-littler_0.3.20-2_all.deb ... 641s Unpacking littler (0.3.20-2) ... 641s Selecting previously unselected package node-bootstrap-sass. 641s Preparing to unpack .../129-node-bootstrap-sass_3.4.3-2_all.deb ... 641s Unpacking node-bootstrap-sass (3.4.3-2) ... 641s Selecting previously unselected package node-html5shiv. 641s Preparing to unpack .../130-node-html5shiv_3.7.3+dfsg-5_all.deb ... 641s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 641s Selecting previously unselected package node-normalize.css. 641s Preparing to unpack .../131-node-normalize.css_8.0.1-5_all.deb ... 641s Unpacking node-normalize.css (8.0.1-5) ... 641s Selecting previously unselected package pandoc-data. 641s Preparing to unpack .../132-pandoc-data_3.1.11.1-3build1_all.deb ... 641s Unpacking pandoc-data (3.1.11.1-3build1) ... 641s Selecting previously unselected package pandoc. 641s Preparing to unpack .../133-pandoc_3.1.11.1+ds-2_s390x.deb ... 641s Unpacking pandoc (3.1.11.1+ds-2) ... 642s Selecting previously unselected package liblzma-dev:s390x. 642s Preparing to unpack .../134-liblzma-dev_5.6.4-1_s390x.deb ... 642s Unpacking liblzma-dev:s390x (5.6.4-1) ... 642s Selecting previously unselected package pkgconf-bin. 642s Preparing to unpack .../135-pkgconf-bin_1.8.1-4_s390x.deb ... 642s Unpacking pkgconf-bin (1.8.1-4) ... 642s Selecting previously unselected package pkgconf:s390x. 642s Preparing to unpack .../136-pkgconf_1.8.1-4_s390x.deb ... 642s Unpacking pkgconf:s390x (1.8.1-4) ... 642s Selecting previously unselected package libtirpc-dev:s390x. 642s Preparing to unpack .../137-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 642s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 642s Selecting previously unselected package r-base-dev. 642s Preparing to unpack .../138-r-base-dev_4.4.3-1_all.deb ... 642s Unpacking r-base-dev (4.4.3-1) ... 642s Selecting previously unselected package pkg-r-autopkgtest. 642s Preparing to unpack .../139-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 642s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 642s Selecting previously unselected package r-bioc-biocgenerics. 642s Preparing to unpack .../140-r-bioc-biocgenerics_0.52.0-2_all.deb ... 642s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 642s Selecting previously unselected package r-bioc-biobase. 642s Preparing to unpack .../141-r-bioc-biobase_2.66.0-2_s390x.deb ... 642s Unpacking r-bioc-biobase (2.66.0-2) ... 642s Selecting previously unselected package r-bioc-s4vectors. 642s Preparing to unpack .../142-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 642s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 642s Selecting previously unselected package r-bioc-iranges. 642s Preparing to unpack .../143-r-bioc-iranges_2.40.1-2_s390x.deb ... 642s Unpacking r-bioc-iranges (2.40.1-2) ... 642s Selecting previously unselected package r-cran-dbi. 642s Preparing to unpack .../144-r-cran-dbi_1.2.3-1_all.deb ... 642s Unpacking r-cran-dbi (1.2.3-1) ... 642s Selecting previously unselected package r-cran-bit. 642s Preparing to unpack .../145-r-cran-bit_4.6.0+dfsg-1_s390x.deb ... 642s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 642s Selecting previously unselected package r-cran-bit64. 642s Preparing to unpack .../146-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ... 642s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 642s Selecting previously unselected package r-cran-rlang. 642s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_s390x.deb ... 642s Unpacking r-cran-rlang (1.1.5-1) ... 642s Selecting previously unselected package r-cran-cli. 642s Preparing to unpack .../148-r-cran-cli_3.6.4-1_s390x.deb ... 642s Unpacking r-cran-cli (3.6.4-1) ... 642s Selecting previously unselected package r-cran-glue. 642s Preparing to unpack .../149-r-cran-glue_1.8.0-1_s390x.deb ... 642s Unpacking r-cran-glue (1.8.0-1) ... 642s Selecting previously unselected package r-cran-lifecycle. 642s Preparing to unpack .../150-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 642s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 642s Selecting previously unselected package r-cran-vctrs. 642s Preparing to unpack .../151-r-cran-vctrs_0.6.5-1_s390x.deb ... 642s Unpacking r-cran-vctrs (0.6.5-1) ... 643s Selecting previously unselected package r-cran-blob. 643s Preparing to unpack .../152-r-cran-blob_1.2.4-1_all.deb ... 643s Unpacking r-cran-blob (1.2.4-1) ... 643s Selecting previously unselected package r-cran-fastmap. 643s Preparing to unpack .../153-r-cran-fastmap_1.2.0-1_s390x.deb ... 643s Unpacking r-cran-fastmap (1.2.0-1) ... 643s Selecting previously unselected package r-cran-cachem. 643s Preparing to unpack .../154-r-cran-cachem_1.1.0-1_s390x.deb ... 643s Unpacking r-cran-cachem (1.1.0-1) ... 643s Selecting previously unselected package r-cran-memoise. 643s Preparing to unpack .../155-r-cran-memoise_2.0.1-1_all.deb ... 643s Unpacking r-cran-memoise (2.0.1-1) ... 643s Selecting previously unselected package r-cran-pkgconfig. 643s Preparing to unpack .../156-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 643s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 643s Selecting previously unselected package r-cran-plogr. 643s Preparing to unpack .../157-r-cran-plogr_0.2.0-3build1_all.deb ... 643s Unpacking r-cran-plogr (0.2.0-3build1) ... 643s Selecting previously unselected package r-cran-cpp11. 643s Preparing to unpack .../158-r-cran-cpp11_0.5.2-1_all.deb ... 643s Unpacking r-cran-cpp11 (0.5.2-1) ... 643s Selecting previously unselected package r-cran-rsqlite. 643s Preparing to unpack .../159-r-cran-rsqlite_2.3.9-1_s390x.deb ... 643s Unpacking r-cran-rsqlite (2.3.9-1) ... 643s Selecting previously unselected package r-cran-curl. 643s Preparing to unpack .../160-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 643s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 643s Selecting previously unselected package r-cran-jsonlite. 643s Preparing to unpack .../161-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 643s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 643s Selecting previously unselected package r-cran-mime. 643s Preparing to unpack .../162-r-cran-mime_0.12-2_s390x.deb ... 643s Unpacking r-cran-mime (0.12-2) ... 643s Selecting previously unselected package r-cran-sys. 643s Preparing to unpack .../163-r-cran-sys_3.4.3-1_s390x.deb ... 643s Unpacking r-cran-sys (3.4.3-1) ... 643s Selecting previously unselected package r-cran-askpass. 643s Preparing to unpack .../164-r-cran-askpass_1.2.1-1_s390x.deb ... 643s Unpacking r-cran-askpass (1.2.1-1) ... 643s Selecting previously unselected package r-cran-openssl. 643s Preparing to unpack .../165-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 643s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 643s Selecting previously unselected package r-cran-r6. 643s Preparing to unpack .../166-r-cran-r6_2.6.1-1_all.deb ... 643s Unpacking r-cran-r6 (2.6.1-1) ... 643s Selecting previously unselected package r-cran-httr. 643s Preparing to unpack .../167-r-cran-httr_1.4.7+dfsg-1_all.deb ... 643s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 643s Selecting previously unselected package r-cran-png. 643s Preparing to unpack .../168-r-cran-png_0.1-8-1build2_s390x.deb ... 643s Unpacking r-cran-png (0.1-8-1build2) ... 643s Selecting previously unselected package r-bioc-zlibbioc. 643s Preparing to unpack .../169-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 643s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 643s Selecting previously unselected package r-bioc-xvector. 643s Preparing to unpack .../170-r-bioc-xvector_0.46.0-2_s390x.deb ... 643s Unpacking r-bioc-xvector (0.46.0-2) ... 643s Selecting previously unselected package r-bioc-ucsc.utils. 643s Preparing to unpack .../171-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 643s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 643s Selecting previously unselected package r-bioc-genomeinfodbdata. 643s Preparing to unpack .../172-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 643s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 643s Selecting previously unselected package r-bioc-genomeinfodb. 643s Preparing to unpack .../173-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 643s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 643s Selecting previously unselected package r-cran-crayon. 643s Preparing to unpack .../174-r-cran-crayon_1.5.3-1_all.deb ... 643s Unpacking r-cran-crayon (1.5.3-1) ... 643s Selecting previously unselected package r-bioc-biostrings. 643s Preparing to unpack .../175-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 643s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 643s Selecting previously unselected package r-bioc-keggrest. 643s Preparing to unpack .../176-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 643s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 643s Selecting previously unselected package r-bioc-annotationdbi. 643s Preparing to unpack .../177-r-bioc-annotationdbi_1.68.0-2_all.deb ... 643s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 643s Selecting previously unselected package r-bioc-biocio. 643s Preparing to unpack .../178-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 643s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 643s Selecting previously unselected package r-cran-formatr. 643s Preparing to unpack .../179-r-cran-formatr_1.14-2_all.deb ... 643s Unpacking r-cran-formatr (1.14-2) ... 643s Selecting previously unselected package r-cran-lambda.r. 643s Preparing to unpack .../180-r-cran-lambda.r_1.2.4-2build1_all.deb ... 643s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 643s Selecting previously unselected package r-cran-futile.options. 643s Preparing to unpack .../181-r-cran-futile.options_1.0.1-3build1_all.deb ... 643s Unpacking r-cran-futile.options (1.0.1-3build1) ... 643s Selecting previously unselected package r-cran-futile.logger. 643s Preparing to unpack .../182-r-cran-futile.logger_1.4.3-4build1_all.deb ... 643s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 643s Selecting previously unselected package r-cran-snow. 643s Preparing to unpack .../183-r-cran-snow_1%3a0.4.4-2_all.deb ... 643s Unpacking r-cran-snow (1:0.4.4-2) ... 643s Selecting previously unselected package r-cran-codetools. 643s Preparing to unpack .../184-r-cran-codetools_0.2-20-1_all.deb ... 643s Unpacking r-cran-codetools (0.2-20-1) ... 643s Selecting previously unselected package r-cran-bh. 643s Preparing to unpack .../185-r-cran-bh_1.84.0-1_all.deb ... 643s Unpacking r-cran-bh (1.84.0-1) ... 643s Selecting previously unselected package r-bioc-biocparallel. 643s Preparing to unpack .../186-r-bioc-biocparallel_1.40.0-2_s390x.deb ... 643s Unpacking r-bioc-biocparallel (1.40.0-2) ... 643s Selecting previously unselected package r-cran-base64enc. 643s Preparing to unpack .../187-r-cran-base64enc_0.1-3-3_s390x.deb ... 643s Unpacking r-cran-base64enc (0.1-3-3) ... 643s Selecting previously unselected package r-cran-digest. 643s Preparing to unpack .../188-r-cran-digest_0.6.37-1_s390x.deb ... 643s Unpacking r-cran-digest (0.6.37-1) ... 643s Selecting previously unselected package r-cran-htmltools. 643s Preparing to unpack .../189-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 643s Unpacking r-cran-htmltools (0.5.8.1-1) ... 643s Selecting previously unselected package r-cran-evaluate. 643s Preparing to unpack .../190-r-cran-evaluate_1.0.3-1_all.deb ... 643s Unpacking r-cran-evaluate (1.0.3-1) ... 643s Selecting previously unselected package r-cran-xfun. 643s Preparing to unpack .../191-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 643s Unpacking r-cran-xfun (0.51+dfsg-1) ... 643s Selecting previously unselected package r-cran-highr. 643s Preparing to unpack .../192-r-cran-highr_0.11+dfsg-1_all.deb ... 643s Unpacking r-cran-highr (0.11+dfsg-1) ... 643s Selecting previously unselected package r-cran-yaml. 643s Preparing to unpack .../193-r-cran-yaml_2.3.10-1_s390x.deb ... 643s Unpacking r-cran-yaml (2.3.10-1) ... 643s Selecting previously unselected package libjs-mathjax. 643s Preparing to unpack .../194-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 643s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 644s Selecting previously unselected package r-cran-knitr. 644s Preparing to unpack .../195-r-cran-knitr_1.49+dfsg-1_all.deb ... 644s Unpacking r-cran-knitr (1.49+dfsg-1) ... 644s Selecting previously unselected package r-cran-jquerylib. 644s Preparing to unpack .../196-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 644s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 644s Selecting previously unselected package r-cran-fs. 644s Preparing to unpack .../197-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 644s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 644s Selecting previously unselected package r-cran-rappdirs. 644s Preparing to unpack .../198-r-cran-rappdirs_0.3.3-1_s390x.deb ... 644s Unpacking r-cran-rappdirs (0.3.3-1) ... 644s Selecting previously unselected package r-cran-sass. 644s Preparing to unpack .../199-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 644s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 644s Selecting previously unselected package r-cran-bslib. 644s Preparing to unpack .../200-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 644s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 644s Selecting previously unselected package r-cran-fontawesome. 644s Preparing to unpack .../201-r-cran-fontawesome_0.5.3-1_all.deb ... 644s Unpacking r-cran-fontawesome (0.5.3-1) ... 644s Selecting previously unselected package r-cran-tinytex. 644s Preparing to unpack .../202-r-cran-tinytex_0.56-1_all.deb ... 644s Unpacking r-cran-tinytex (0.56-1) ... 644s Selecting previously unselected package libjs-modernizr. 644s Preparing to unpack .../203-libjs-modernizr_3.13.0-0.1_all.deb ... 644s Unpacking libjs-modernizr (3.13.0-0.1) ... 644s Selecting previously unselected package r-cran-pkgkitten. 644s Preparing to unpack .../204-r-cran-pkgkitten_0.2.4-1_all.deb ... 644s Unpacking r-cran-pkgkitten (0.2.4-1) ... 644s Selecting previously unselected package r-cran-rcpp. 644s Preparing to unpack .../205-r-cran-rcpp_1.0.14-1_s390x.deb ... 644s Unpacking r-cran-rcpp (1.0.14-1) ... 644s Selecting previously unselected package r-cran-later. 644s Preparing to unpack .../206-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 644s Unpacking r-cran-later (1.4.1+dfsg-1) ... 644s Selecting previously unselected package r-cran-magrittr. 644s Preparing to unpack .../207-r-cran-magrittr_2.0.3-1_s390x.deb ... 644s Unpacking r-cran-magrittr (2.0.3-1) ... 644s Selecting previously unselected package r-cran-promises. 644s Preparing to unpack .../208-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 644s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 644s Selecting previously unselected package r-cran-httpuv. 644s Preparing to unpack .../209-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 644s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 644s Selecting previously unselected package r-cran-xtable. 644s Preparing to unpack .../210-r-cran-xtable_1%3a1.8-4-2_all.deb ... 644s Unpacking r-cran-xtable (1:1.8-4-2) ... 644s Selecting previously unselected package r-cran-sourcetools. 644s Preparing to unpack .../211-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 644s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 644s Selecting previously unselected package r-cran-withr. 644s Preparing to unpack .../212-r-cran-withr_3.0.2+dfsg-1_all.deb ... 644s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 644s Selecting previously unselected package r-cran-commonmark. 644s Preparing to unpack .../213-r-cran-commonmark_1.9.2-2_s390x.deb ... 644s Unpacking r-cran-commonmark (1.9.2-2) ... 644s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 644s Preparing to unpack .../214-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 644s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 644s Selecting previously unselected package r-cran-shiny. 644s Preparing to unpack .../215-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 644s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 644s Selecting previously unselected package r-cran-rmarkdown. 644s Preparing to unpack .../216-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 644s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 644s Selecting previously unselected package r-cran-bookdown. 644s Preparing to unpack .../217-r-cran-bookdown_0.42+dfsg-1_all.deb ... 644s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 644s Selecting previously unselected package r-cran-biocmanager. 644s Preparing to unpack .../218-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 644s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 644s Selecting previously unselected package tex-common. 644s Preparing to unpack .../219-tex-common_6.19_all.deb ... 644s Unpacking tex-common (6.19) ... 644s Selecting previously unselected package t1utils. 644s Preparing to unpack .../220-t1utils_1.41-4build3_s390x.deb ... 645s Unpacking t1utils (1.41-4build3) ... 645s Selecting previously unselected package texlive-binaries. 645s Preparing to unpack .../221-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ... 645s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 645s Selecting previously unselected package texlive-base. 645s Preparing to unpack .../222-texlive-base_2024.20250114-1_all.deb ... 645s Unpacking texlive-base (2024.20250114-1) ... 646s Selecting previously unselected package texlive-latex-base. 646s Preparing to unpack .../223-texlive-latex-base_2024.20250114-1_all.deb ... 646s Unpacking texlive-latex-base (2024.20250114-1) ... 646s Selecting previously unselected package texlive-bibtex-extra. 646s Preparing to unpack .../224-texlive-bibtex-extra_2024.20250114-1_all.deb ... 646s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 649s Selecting previously unselected package r-bioc-biocversion. 649s Preparing to unpack .../225-r-bioc-biocversion_3.20.0-2_all.deb ... 649s Unpacking r-bioc-biocversion (3.20.0-2) ... 649s Selecting previously unselected package r-bioc-biocstyle. 649s Preparing to unpack .../226-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 649s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 649s Selecting previously unselected package r-bioc-genomicranges. 649s Preparing to unpack .../227-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ... 649s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 649s Selecting previously unselected package r-cran-xml. 649s Preparing to unpack .../228-r-cran-xml_3.99-0.18-1_s390x.deb ... 649s Unpacking r-cran-xml (3.99-0.18-1) ... 649s Selecting previously unselected package r-cran-bitops. 649s Preparing to unpack .../229-r-cran-bitops_1.0-9-1_s390x.deb ... 649s Unpacking r-cran-bitops (1.0-9-1) ... 649s Selecting previously unselected package r-bioc-rhtslib. 649s Preparing to unpack .../230-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ... 649s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 649s Selecting previously unselected package r-bioc-rsamtools. 649s Preparing to unpack .../231-r-bioc-rsamtools_2.22.0+dfsg-2_s390x.deb ... 649s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 649s Selecting previously unselected package r-cran-matrixstats. 649s Preparing to unpack .../232-r-cran-matrixstats_1.5.0-1_s390x.deb ... 649s Unpacking r-cran-matrixstats (1.5.0-1) ... 649s Selecting previously unselected package r-bioc-matrixgenerics. 649s Preparing to unpack .../233-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 649s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 649s Selecting previously unselected package r-cran-lattice. 649s Preparing to unpack .../234-r-cran-lattice_0.22-6-1_s390x.deb ... 649s Unpacking r-cran-lattice (0.22-6-1) ... 649s Selecting previously unselected package r-cran-matrix. 649s Preparing to unpack .../235-r-cran-matrix_1.7-3-1_s390x.deb ... 649s Unpacking r-cran-matrix (1.7-3-1) ... 649s Selecting previously unselected package r-cran-abind. 649s Preparing to unpack .../236-r-cran-abind_1.4-8-1_all.deb ... 649s Unpacking r-cran-abind (1.4-8-1) ... 649s Selecting previously unselected package r-bioc-s4arrays. 649s Preparing to unpack .../237-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ... 649s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 649s Selecting previously unselected package r-bioc-sparsearray. 649s Preparing to unpack .../238-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ... 649s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 649s Selecting previously unselected package r-bioc-delayedarray. 649s Preparing to unpack .../239-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ... 649s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 649s Selecting previously unselected package r-bioc-summarizedexperiment. 649s Preparing to unpack .../240-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 649s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 649s Selecting previously unselected package r-bioc-genomicalignments. 649s Preparing to unpack .../241-r-bioc-genomicalignments_1.42.0-2_s390x.deb ... 649s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 649s Selecting previously unselected package r-cran-rcurl. 649s Preparing to unpack .../242-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 649s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 649s Selecting previously unselected package r-cran-rjson. 649s Preparing to unpack .../243-r-cran-rjson_0.2.23-1_s390x.deb ... 649s Unpacking r-cran-rjson (0.2.23-1) ... 649s Selecting previously unselected package r-cran-restfulr. 649s Preparing to unpack .../244-r-cran-restfulr_0.0.15-1_s390x.deb ... 649s Unpacking r-cran-restfulr (0.0.15-1) ... 649s Selecting previously unselected package r-bioc-rtracklayer. 649s Preparing to unpack .../245-r-bioc-rtracklayer_1.66.0-2_s390x.deb ... 649s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 649s Selecting previously unselected package r-bioc-bsgenome. 649s Preparing to unpack .../246-r-bioc-bsgenome_1.74.0-2_all.deb ... 649s Unpacking r-bioc-bsgenome (1.74.0-2) ... 650s Selecting previously unselected package r-cran-locfit. 650s Preparing to unpack .../247-r-cran-locfit_1.5-9.12-1_s390x.deb ... 650s Unpacking r-cran-locfit (1.5-9.12-1) ... 650s Selecting previously unselected package r-cran-gtable. 650s Preparing to unpack .../248-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 650s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 650s Selecting previously unselected package r-cran-isoband. 650s Preparing to unpack .../249-r-cran-isoband_0.2.7-1_s390x.deb ... 650s Unpacking r-cran-isoband (0.2.7-1) ... 650s Selecting previously unselected package r-cran-mass. 650s Preparing to unpack .../250-r-cran-mass_7.3-64-1_s390x.deb ... 650s Unpacking r-cran-mass (7.3-64-1) ... 650s Selecting previously unselected package r-cran-nlme. 650s Preparing to unpack .../251-r-cran-nlme_3.1.167-1_s390x.deb ... 650s Unpacking r-cran-nlme (3.1.167-1) ... 650s Selecting previously unselected package r-cran-mgcv. 650s Preparing to unpack .../252-r-cran-mgcv_1.9-1-1_s390x.deb ... 650s Unpacking r-cran-mgcv (1.9-1-1) ... 650s Selecting previously unselected package r-cran-farver. 650s Preparing to unpack .../253-r-cran-farver_2.1.2-1_s390x.deb ... 650s Unpacking r-cran-farver (2.1.2-1) ... 650s Selecting previously unselected package r-cran-labeling. 650s Preparing to unpack .../254-r-cran-labeling_0.4.3-1_all.deb ... 650s Unpacking r-cran-labeling (0.4.3-1) ... 650s Selecting previously unselected package r-cran-colorspace. 650s Preparing to unpack .../255-r-cran-colorspace_2.1-1+dfsg-1_s390x.deb ... 650s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 650s Selecting previously unselected package r-cran-munsell. 650s Preparing to unpack .../256-r-cran-munsell_0.5.1-1_all.deb ... 650s Unpacking r-cran-munsell (0.5.1-1) ... 650s Selecting previously unselected package r-cran-rcolorbrewer. 650s Preparing to unpack .../257-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 650s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 650s Selecting previously unselected package r-cran-viridislite. 650s Preparing to unpack .../258-r-cran-viridislite_0.4.2-2_all.deb ... 650s Unpacking r-cran-viridislite (0.4.2-2) ... 650s Selecting previously unselected package r-cran-scales. 650s Preparing to unpack .../259-r-cran-scales_1.3.0-1_all.deb ... 650s Unpacking r-cran-scales (1.3.0-1) ... 650s Selecting previously unselected package r-cran-fansi. 650s Preparing to unpack .../260-r-cran-fansi_1.0.5-1_s390x.deb ... 650s Unpacking r-cran-fansi (1.0.5-1) ... 650s Selecting previously unselected package r-cran-utf8. 650s Preparing to unpack .../261-r-cran-utf8_1.2.4-1_s390x.deb ... 650s Unpacking r-cran-utf8 (1.2.4-1) ... 650s Selecting previously unselected package r-cran-pillar. 650s Preparing to unpack .../262-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 650s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 650s Selecting previously unselected package r-cran-tibble. 650s Preparing to unpack .../263-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ... 650s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 650s Selecting previously unselected package r-cran-ggplot2. 650s Preparing to unpack .../264-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 650s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 650s Selecting previously unselected package r-cran-rcpparmadillo. 650s Preparing to unpack .../265-r-cran-rcpparmadillo_14.2.3-1-1_s390x.deb ... 650s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 650s Selecting previously unselected package r-bioc-deseq2. 650s Preparing to unpack .../266-r-bioc-deseq2_1.46.0+dfsg-2_s390x.deb ... 650s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 650s Selecting previously unselected package r-cran-statmod. 650s Preparing to unpack .../267-r-cran-statmod_1.5.0-1_s390x.deb ... 650s Unpacking r-cran-statmod (1.5.0-1) ... 650s Selecting previously unselected package r-bioc-limma. 650s Preparing to unpack .../268-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ... 650s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 650s Selecting previously unselected package r-bioc-edger. 650s Preparing to unpack .../269-r-bioc-edger_4.4.2+dfsg-1_s390x.deb ... 650s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 650s Selecting previously unselected package r-bioc-genomicfeatures. 650s Preparing to unpack .../270-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 650s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 650s Selecting previously unselected package r-bioc-pwalign. 650s Preparing to unpack .../271-r-bioc-pwalign_1.2.0-2_s390x.deb ... 650s Unpacking r-bioc-pwalign (1.2.0-2) ... 650s Selecting previously unselected package r-cran-hwriter. 650s Preparing to unpack .../272-r-cran-hwriter_1.3.2.1-1_all.deb ... 650s Unpacking r-cran-hwriter (1.3.2.1-1) ... 650s Selecting previously unselected package r-cran-jpeg. 650s Preparing to unpack .../273-r-cran-jpeg_0.1-10-1_s390x.deb ... 650s Unpacking r-cran-jpeg (0.1-10-1) ... 650s Selecting previously unselected package r-cran-deldir. 650s Preparing to unpack .../274-r-cran-deldir_2.0-4-1build1_s390x.deb ... 650s Unpacking r-cran-deldir (2.0-4-1build1) ... 650s Selecting previously unselected package r-cran-rcppeigen. 650s Preparing to unpack .../275-r-cran-rcppeigen_0.3.4.0.2-1_s390x.deb ... 650s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 650s Selecting previously unselected package r-cran-interp. 650s Preparing to unpack .../276-r-cran-interp_1.1-6-1_s390x.deb ... 650s Unpacking r-cran-interp (1.1-6-1) ... 650s Selecting previously unselected package r-cran-latticeextra. 650s Preparing to unpack .../277-r-cran-latticeextra_0.6-30-1_all.deb ... 650s Unpacking r-cran-latticeextra (0.6-30-1) ... 650s Selecting previously unselected package r-bioc-shortread. 650s Preparing to unpack .../278-r-bioc-shortread_1.64.0-3_s390x.deb ... 650s Unpacking r-bioc-shortread (1.64.0-3) ... 650s Selecting previously unselected package r-cran-runit. 650s Preparing to unpack .../279-r-cran-runit_0.4.33-1_all.deb ... 650s Unpacking r-cran-runit (0.4.33-1) ... 650s Setting up libjs-json (0~20221030+~1.0.8-1) ... 650s Setting up javascript-common (12) ... 650s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 650s Setting up libpixman-1-0:s390x (0.44.0-3) ... 650s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 650s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 650s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 650s Setting up libxpm4:s390x (1:3.5.17-1build2) ... 650s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 650s Setting up libxi6:s390x (2:1.8.2-1) ... 650s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 650s Setting up libdatrie1:s390x (0.2.13-3build1) ... 650s Setting up libjs-popper.js (1.16.1+ds-6) ... 650s Setting up libxcb-render0:s390x (1.17.0-2) ... 650s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 650s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 650s Setting up libjs-lunr (2.3.9~dfsg-2) ... 650s Setting up unzip (6.0-28ubuntu6) ... 650s Setting up liblatex-tounicode-perl (0.55-1) ... 650s Setting up x11-common (1:7.7+23ubuntu3) ... 651s Setting up node-html5shiv (3.7.3+dfsg-5) ... 651s Setting up libdeflate0:s390x (1.23-1) ... 651s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 651s Setting up libxcb-shm0:s390x (1.17.0-2) ... 651s Setting up libreadline-dev:s390x (8.2-6) ... 651s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 651s Setting up libjs-modernizr (3.13.0-0.1) ... 651s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 651s Setting up libpcre2-16-0:s390x (10.45-1) ... 651s Setting up libjs-es5-shim (4.6.7-2) ... 651s Setting up tex-common (6.19) ... 651s update-language: texlive-base not installed and configured, doing nothing! 651s Setting up libio-string-perl (1.08-4) ... 651s Setting up zip (3.0-14ubuntu2) ... 651s Setting up libpcre2-32-0:s390x (10.45-1) ... 651s Setting up libblas3:s390x (3.12.1-2) ... 651s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 651s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 651s Setting up libpkgconf3:s390x (1.8.1-4) ... 651s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 651s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 651s Setting up libteckit0:s390x (2.5.12+ds1-1) ... 651s Setting up t1utils (1.41-4build3) ... 651s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ... 651s Setting up libjs-d3 (3.5.17-4) ... 651s Setting up fonts-dejavu-mono (2.37-8) ... 651s Setting up libmpc3:s390x (1.3.1-1build2) ... 651s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 651s Setting up libmpfi0:s390x (1.5.4+ds-4) ... 651s Setting up icu-devtools (76.1-1ubuntu2) ... 651s Setting up fonts-dejavu-core (2.37-8) ... 651s Setting up pkgconf-bin (1.8.1-4) ... 651s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 651s Setting up libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ... 651s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 651s Setting up libwebp7:s390x (1.5.0-0.1) ... 651s Setting up liblzma-dev:s390x (5.6.4-1) ... 651s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 651s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 651s Setting up libpcre2-posix3:s390x (10.45-1) ... 651s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 651s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 651s Setting up fonts-lmodern (2.005-1) ... 651s Setting up liblua5.4-0:s390x (5.4.7-1) ... 651s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 651s Setting up libthai-data (0.1.29-2build1) ... 651s Setting up node-bootstrap-sass (3.4.3-2) ... 651s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 651s Setting up libxss1:s390x (1:1.2.3-1build3) ... 651s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 651s Setting up libpaper2:s390x (2.2.5-0.3) ... 651s Setting up pandoc-data (3.1.11.1-3build1) ... 651s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 651s Setting up libisl23:s390x (0.27-1) ... 651s Setting up libdeflate-dev:s390x (1.23-1) ... 651s Setting up node-normalize.css (8.0.1-5) ... 651s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 651s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 651s Setting up xdg-utils (1.2.1-2ubuntu1) ... 651s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 651s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 651s Setting up libblas-dev:s390x (3.12.1-2) ... 651s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 651s Setting up dctrl-tools (2.24-3build3) ... 651s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 651s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 651s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ... 651s Setting up libbz2-dev:s390x (1.0.8-6) ... 651s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 651s Setting up libpotrace0:s390x (1.16-2build1) ... 651s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 651s Setting up libice6:s390x (2:1.1.1-1) ... 651s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 651s Setting up liblapack3:s390x (3.12.1-2) ... 651s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 651s Setting up libpcre2-dev:s390x (10.45-1) ... 651s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 651s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 651s Setting up libpng-dev:s390x (1.6.47-1) ... 651s Setting up libpaper-utils (2.2.5-0.3) ... 651s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 651s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 651s Setting up pkgconf:s390x (1.8.1-4) ... 651s Setting up libthai0:s390x (0.1.29-2build1) ... 651s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 651s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ... 651s Setting up pandoc (3.1.11.1+ds-2) ... 651s Setting up liblapack-dev:s390x (3.12.1-2) ... 651s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 651s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 651s Setting up cpp-14 (14.2.0-17ubuntu3) ... 651s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 651s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 651s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 651s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 651s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 651s Setting up libsm6:s390x (2:1.2.4-1) ... 651s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 651s Setting up fontconfig (2.15.0-2ubuntu1) ... 653s Regenerating fonts cache... done. 653s Setting up libxft2:s390x (2.3.6-1build1) ... 653s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 653s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 653s Setting up libtk8.6:s390x (8.6.16-1) ... 653s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 653s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 653s Setting up libcairo2:s390x (1.18.2-2) ... 653s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 653s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 653s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 653s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 653s Setting up cpp (4:14.2.0-1ubuntu1) ... 653s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ... 653s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 653s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 653s Setting up libxmu6:s390x (2:1.1.3-3build2) ... 653s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 653s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 653s Setting up libxaw7:s390x (2:1.0.16-1) ... 653s Setting up gcc-14 (14.2.0-17ubuntu3) ... 653s Setting up r-base-core (4.4.3-1) ... 653s Creating config file /etc/R/Renviron with new version 653s Setting up r-cran-crayon (1.5.3-1) ... 653s Setting up r-cran-labeling (0.4.3-1) ... 653s Setting up r-cran-sourcetools (0.1.7-1-1) ... 653s Setting up r-cran-futile.options (1.0.1-3build1) ... 653s Setting up r-cran-lattice (0.22-6-1) ... 653s Setting up r-cran-nlme (3.1.167-1) ... 653s Setting up r-cran-farver (2.1.2-1) ... 653s Setting up r-cran-formatr (1.14-2) ... 653s Setting up r-cran-xml (3.99-0.18-1) ... 653s Setting up r-cran-viridislite (0.4.2-2) ... 653s Setting up r-cran-locfit (1.5-9.12-1) ... 653s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ... 653s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 653s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 653s Setting up r-cran-statmod (1.5.0-1) ... 653s Setting up r-cran-commonmark (1.9.2-2) ... 653s Setting up g++-14 (14.2.0-17ubuntu3) ... 653s Setting up r-cran-rjson (0.2.23-1) ... 653s Setting up r-cran-r6 (2.6.1-1) ... 653s Setting up r-cran-pkgkitten (0.2.4-1) ... 653s Setting up r-cran-jpeg (0.1-10-1) ... 653s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 653s Setting up texlive-base (2024.20250114-1) ... 654s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 654s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 654s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 654s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 654s Setting up r-cran-magrittr (2.0.3-1) ... 654s Setting up r-cran-rappdirs (0.3.3-1) ... 654s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 654s Setting up r-cran-littler (0.3.20-2) ... 654s Setting up r-cran-bh (1.84.0-1) ... 654s Setting up r-cran-fs (1.6.5+dfsg-1) ... 654s Setting up r-cran-rcpp (1.0.14-1) ... 654s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 654s Setting up r-cran-codetools (0.2-20-1) ... 654s Setting up r-bioc-biocgenerics (0.52.0-2) ... 654s Setting up r-cran-rlang (1.1.5-1) ... 654s Setting up r-cran-matrixstats (1.5.0-1) ... 654s Setting up littler (0.3.20-2) ... 654s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 654s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 654s Setting up r-cran-xfun (0.51+dfsg-1) ... 654s Setting up r-cran-sys (3.4.3-1) ... 654s Setting up r-cran-plogr (0.2.0-3build1) ... 654s Setting up r-cran-withr (3.0.2+dfsg-1) ... 654s Setting up r-cran-mime (0.12-2) ... 654s Setting up r-cran-base64enc (0.1-3-3) ... 654s Setting up r-cran-abind (1.4-8-1) ... 654s Setting up r-cran-digest (0.6.37-1) ... 654s Setting up r-cran-yaml (2.3.10-1) ... 654s Setting up r-cran-lambda.r (1.2.4-2build1) ... 654s Setting up r-cran-evaluate (1.0.3-1) ... 654s Setting up r-cran-dbi (1.2.3-1) ... 654s Setting up r-cran-highr (0.11+dfsg-1) ... 654s Setting up r-cran-fansi (1.0.5-1) ... 654s Setting up r-cran-mass (7.3-64-1) ... 654s Setting up r-cran-snow (1:0.4.4-2) ... 654s Setting up r-cran-glue (1.8.0-1) ... 654s Setting up r-cran-bit (4.6.0+dfsg-1) ... 654s Setting up r-cran-xtable (1:1.8-4-2) ... 654s Setting up r-cran-cli (3.6.4-1) ... 654s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 654s Setting up r-cran-bitops (1.0-9-1) ... 654s Setting up r-bioc-biocversion (3.20.0-2) ... 654s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 654s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 654s Setting up gcc (4:14.2.0-1ubuntu1) ... 654s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 654s Setting up r-cran-deldir (2.0-4-1build1) ... 654s Setting up r-cran-askpass (1.2.1-1) ... 654s Setting up r-cran-fastmap (1.2.0-1) ... 654s Setting up r-cran-png (0.1-8-1build2) ... 654s Setting up r-bioc-biobase (2.66.0-2) ... 654s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 654s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 654s Setting up r-cran-utf8 (1.2.4-1) ... 654s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 654s Setting up texlive-latex-base (2024.20250114-1) ... 654s Setting up r-cran-hwriter (1.3.2.1-1) ... 654s Setting up r-cran-cpp11 (0.5.2-1) ... 654s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 654s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 654s Setting up r-cran-isoband (0.2.7-1) ... 654s Setting up r-cran-runit (0.4.33-1) ... 654s Setting up r-cran-futile.logger (1.4.3-4build1) ... 654s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 654s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 654s Setting up r-cran-later (1.4.1+dfsg-1) ... 654s Setting up r-cran-matrix (1.7-3-1) ... 654s Setting up r-cran-htmltools (0.5.8.1-1) ... 654s Setting up r-cran-tinytex (0.56-1) ... 654s Setting up r-cran-knitr (1.49+dfsg-1) ... 654s Setting up r-cran-mgcv (1.9-1-1) ... 654s Setting up g++ (4:14.2.0-1ubuntu1) ... 654s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 654s Setting up r-cran-cachem (1.1.0-1) ... 654s Setting up r-cran-sass (0.4.9+dfsg-1) ... 654s Setting up build-essential (12.10ubuntu1) ... 654s Setting up r-cran-rcpparmadillo (14.2.3-1-1) ... 654s Setting up r-bioc-iranges (2.40.1-2) ... 654s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 654s Setting up r-cran-restfulr (0.0.15-1) ... 654s Setting up r-cran-vctrs (0.6.5-1) ... 654s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 654s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 654s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 654s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 654s Setting up r-bioc-biocparallel (1.40.0-2) ... 654s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 654s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 654s Setting up r-cran-munsell (0.5.1-1) ... 654s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 654s Setting up r-cran-fontawesome (0.5.3-1) ... 654s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 654s Setting up gfortran (4:14.2.0-1ubuntu1) ... 654s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 654s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 654s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 654s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 654s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 655s Setting up texlive-bibtex-extra (2024.20250114-1) ... 655s Setting up r-cran-interp (1.1-6-1) ... 655s Setting up r-cran-httr (1.4.7+dfsg-1) ... 655s Setting up r-cran-scales (1.3.0-1) ... 655s Setting up r-cran-memoise (2.0.1-1) ... 655s Setting up r-cran-promises (1.3.2+dfsg-1) ... 655s Setting up r-cran-blob (1.2.4-1) ... 655s Setting up r-bioc-xvector (0.46.0-2) ... 655s Setting up r-cran-rsqlite (2.3.9-1) ... 655s Setting up r-base-dev (4.4.3-1) ... 655s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 655s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 655s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 655s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 655s Setting up r-cran-latticeextra (0.6-30-1) ... 655s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 655s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 655s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 655s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 655s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 655s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 655s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 655s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 655s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 655s Setting up r-cran-bookdown (0.42+dfsg-1) ... 655s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 655s Setting up r-bioc-pwalign (1.2.0-2) ... 655s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 655s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 655s Setting up r-bioc-annotationdbi (1.68.0-2) ... 655s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 655s Setting up r-bioc-genomicalignments (1.42.0-2) ... 655s Setting up r-bioc-rtracklayer (1.66.0-2) ... 655s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 655s Setting up r-bioc-shortread (1.64.0-3) ... 655s Setting up r-bioc-bsgenome (1.74.0-2) ... 655s Processing triggers for libc-bin (2.41-1ubuntu2) ... 655s Processing triggers for man-db (2.13.0-1) ... 656s Processing triggers for install-info (7.1.1-1) ... 656s Processing triggers for tex-common (6.19) ... 656s Running updmap-sys. This may take some time... done. 656s Running mktexlsr /var/lib/texmf ... done. 656s Building format(s) --all. 697s This may take some time... done. 698s autopkgtest [17:55:17]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 698s autopkgtest [17:55:17]: test pkg-r-autopkgtest: [----------------------- 699s Test: Try to load the R library GenomicAlignments 699s 699s R version 4.4.3 (2025-02-28) -- "Trophy Case" 699s Copyright (C) 2025 The R Foundation for Statistical Computing 699s Platform: s390x-ibm-linux-gnu 699s 699s R is free software and comes with ABSOLUTELY NO WARRANTY. 699s You are welcome to redistribute it under certain conditions. 699s Type 'license()' or 'licence()' for distribution details. 699s 699s R is a collaborative project with many contributors. 699s Type 'contributors()' for more information and 699s 'citation()' on how to cite R or R packages in publications. 699s 699s Type 'demo()' for some demos, 'help()' for on-line help, or 699s 'help.start()' for an HTML browser interface to help. 699s Type 'q()' to quit R. 699s 699s > library('GenomicAlignments') 699s Loading required package: BiocGenerics 699s 699s Attaching package: ‘BiocGenerics’ 699s 699s The following objects are masked from ‘package:stats’: 699s 699s IQR, mad, sd, var, xtabs 699s 699s The following objects are masked from ‘package:base’: 699s 699s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 699s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 699s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 699s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 699s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 699s table, tapply, union, unique, unsplit, which.max, which.min 699s 699s Loading required package: S4Vectors 699s Loading required package: stats4 699s 699s Attaching package: ‘S4Vectors’ 699s 699s The following object is masked from ‘package:utils’: 699s 699s findMatches 699s 699s The following objects are masked from ‘package:base’: 699s 699s expand.grid, I, unname 699s 699s Loading required package: IRanges 700s Loading required package: GenomeInfoDb 700s Loading required package: GenomicRanges 701s Loading required package: SummarizedExperiment 701s Loading required package: MatrixGenerics 701s Loading required package: matrixStats 701s 701s Attaching package: ‘MatrixGenerics’ 701s 701s The following objects are masked from ‘package:matrixStats’: 701s 701s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 701s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 701s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 701s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 701s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 701s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 701s colWeightedMeans, colWeightedMedians, colWeightedSds, 701s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 701s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 701s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 701s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 701s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 701s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 701s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 701s rowWeightedSds, rowWeightedVars 701s 701s Loading required package: Biobase 701s Welcome to Bioconductor 701s 701s Vignettes contain introductory material; view with 701s 'browseVignettes()'. To cite Bioconductor, see 701s 'citation("Biobase")', and for packages 'citation("pkgname")'. 701s 701s 701s Attaching package: ‘Biobase’ 701s 701s The following object is masked from ‘package:MatrixGenerics’: 701s 701s rowMedians 701s 701s The following objects are masked from ‘package:matrixStats’: 701s 701s anyMissing, rowMedians 701s 704s Loading required package: Biostrings 704s Loading required package: XVector 705s 705s Attaching package: ‘Biostrings’ 705s 705s The following object is masked from ‘package:base’: 705s 705s strsplit 705s 705s Loading required package: Rsamtools 705s > 705s > 705s Other tests are currently unsupported! 705s They will be progressively added. 706s autopkgtest [17:55:25]: test pkg-r-autopkgtest: -----------------------] 706s autopkgtest [17:55:25]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 706s pkg-r-autopkgtest PASS 706s autopkgtest [17:55:25]: @@@@@@@@@@@@@@@@@@@@ summary 706s pkg-r-autopkgtest PASS 712s nova [W] Using flock in prodstack6-s390x 712s Creating nova instance adt-plucky-s390x-r-bioc-genomicalignments-20250315-174333-juju-7f2275-prod-proposed-migration-environment-15-7e333a30-f54a-4fe3-b63d-2ba5fd3bcb21 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 712s nova [W] Timed out waiting for cfc4626e-845a-4b17-a73d-89432fd455a1 to get deleted.