1s autopkgtest [17:42:53]: starting date and time: 2025-03-15 17:42:53+0000
  1s autopkgtest [17:42:53]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  1s autopkgtest [17:42:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zaiqp36c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-ebseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-18.secgroup --name adt-plucky-s390x-r-bioc-ebseq-20250315-174252-juju-7f2275-prod-proposed-migration-environment-2-df7d4479-b06d-44eb-9290-3442289e27ec --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
133s autopkgtest [17:45:05]: testbed dpkg architecture: s390x
133s autopkgtest [17:45:05]: testbed apt version: 2.9.33
134s autopkgtest [17:45:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
134s autopkgtest [17:45:06]: testbed release detected to be: None
135s autopkgtest [17:45:07]: updating testbed package index (apt update)
135s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
135s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
135s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
136s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
136s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
136s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
136s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
136s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
136s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
136s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
136s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
136s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
136s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
136s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
136s Fetched 1073 kB in 1s (961 kB/s)
137s Reading package lists...
138s Reading package lists...
138s Building dependency tree...
138s Reading state information...
138s Calculating upgrade...
138s Calculating upgrade...
138s The following packages were automatically installed and are no longer required:
138s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
138s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
138s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
138s   linux-tools-6.11.0-8-generic
138s Use 'sudo apt autoremove' to remove them.
138s The following packages will be upgraded:
138s   pinentry-curses python3-jinja2 strace
138s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
138s Need to get 652 kB of archives.
138s After this operation, 27.6 kB of additional disk space will be used.
138s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
139s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
139s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
139s Fetched 652 kB in 1s (882 kB/s)
140s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
140s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
140s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
140s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
140s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
140s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
140s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
140s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
140s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
140s Setting up strace (6.13+ds-1ubuntu1) ...
140s Processing triggers for man-db (2.13.0-1) ...
140s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s Solving dependencies...
141s The following packages will be REMOVED:
141s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
141s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
141s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
141s   linux-tools-6.11.0-8-generic*
141s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
141s After this operation, 167 MB disk space will be freed.
141s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
141s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
141s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
141s Removing libpython3.12t64:s390x (3.12.9-1) ...
141s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
141s Removing libnsl2:s390x (1.3.0-3build3) ...
141s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
141s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
141s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
142s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
142s Processing triggers for libc-bin (2.41-1ubuntu1) ...
142s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
142s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
142s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
143s autopkgtest [17:45:15]: upgrading testbed (apt dist-upgrade and autopurge)
143s Reading package lists...
143s Building dependency tree...
143s Reading state information...
143s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
143s Starting 2 pkgProblemResolver with broken count: 0
143s Done
143s Entering ResolveByKeep
143s 
143s Calculating upgrade...
144s The following packages will be upgraded:
144s   libc-bin libc-dev-bin libc6 libc6-dev locales
144s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
144s Need to get 9512 kB of archives.
144s After this operation, 8192 B of additional disk space will be used.
144s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
145s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
145s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
150s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
152s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
159s Preconfiguring packages ...
159s Fetched 9512 kB in 16s (609 kB/s)
160s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
160s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
160s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
160s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
160s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
160s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
160s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
160s Setting up libc6:s390x (2.41-1ubuntu2) ...
160s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
160s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
160s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
160s Setting up libc-bin (2.41-1ubuntu2) ...
160s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
160s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
160s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
160s Setting up locales (2.41-1ubuntu2) ...
160s Generating locales (this might take a while)...
161s   en_US.UTF-8... done
161s Generation complete.
161s Setting up libc-dev-bin (2.41-1ubuntu2) ...
161s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
161s Processing triggers for man-db (2.13.0-1) ...
162s Processing triggers for systemd (257.3-1ubuntu3) ...
163s Reading package lists...
163s Building dependency tree...
163s Reading state information...
163s Starting pkgProblemResolver with broken count: 0
163s Starting 2 pkgProblemResolver with broken count: 0
163s Done
164s Solving dependencies...
164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
164s autopkgtest [17:45:36]: rebooting testbed after setup commands that affected boot
185s autopkgtest [17:45:57]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
187s autopkgtest [17:45:59]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ebseq
190s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (dsc) [2190 B]
190s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (tar) [1124 kB]
190s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-ebseq 2.4.0-2 (diff) [5148 B]
190s gpgv: Signature made Sat Jan 11 16:40:41 2025 UTC
190s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
190s gpgv:                issuer "crusoe@debian.org"
190s gpgv: Can't check signature: No public key
190s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ebseq_2.4.0-2.dsc: no acceptable signature found
190s autopkgtest [17:46:02]: testing package r-bioc-ebseq version 2.4.0-2
191s autopkgtest [17:46:03]: build not needed
193s autopkgtest [17:46:05]: test pkg-r-autopkgtest: preparing testbed
193s Reading package lists...
193s Building dependency tree...
193s Reading state information...
193s Starting pkgProblemResolver with broken count: 0
193s Starting 2 pkgProblemResolver with broken count: 0
193s Done
194s The following NEW packages will be installed:
194s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
194s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
194s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
194s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
194s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
194s   libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2
194s   libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libfreetype6
194s   libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3
194s   libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
194s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
194s   liblapack3 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
194s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
194s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
194s   libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
194s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7
194s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler
194s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
194s   r-bioc-biocgenerics r-bioc-ebseq r-cran-bh r-cran-bitops
194s   r-cran-blockmodeling r-cran-brio r-cran-callr r-cran-catools r-cran-cli
194s   r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate
194s   r-cran-fs r-cran-gdata r-cran-glue r-cran-gplots r-cran-gtools
194s   r-cran-jsonlite r-cran-kernsmooth r-cran-lattice r-cran-lifecycle
194s   r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-pkgbuild
194s   r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
194s   r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rlang r-cran-rprojroot
194s   r-cran-testthat r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip
194s   zlib1g-dev
194s 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded.
194s Need to get 158 MB of archives.
194s After this operation, 575 MB of additional disk space will be used.
194s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
195s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
195s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
206s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
206s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
206s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
206s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
206s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
206s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
206s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
209s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
210s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
211s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
228s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
228s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
228s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
228s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
230s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
239s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
239s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
239s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
239s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
239s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
239s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
239s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
240s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
240s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
240s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
240s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
241s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
241s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
242s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
250s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
251s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
251s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
251s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
251s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
251s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
251s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB]
261s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
261s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
261s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
261s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
261s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
261s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
261s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
262s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
262s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
262s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
262s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
262s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
263s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
263s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
263s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
273s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
274s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
274s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
274s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
274s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
274s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
276s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
283s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
283s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
283s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
283s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
283s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
283s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
283s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
283s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
283s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
284s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
284s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
284s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
284s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
285s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
285s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
285s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
285s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
285s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
285s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
286s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
286s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
286s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
287s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
287s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
287s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
287s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
287s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
287s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
288s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
288s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
311s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
311s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
311s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
312s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
312s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
312s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
312s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
312s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
312s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
313s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
314s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
319s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blockmodeling s390x 1.1.5-1 [439 kB]
320s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gtools s390x 3.9.5-1 [340 kB]
320s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB]
320s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-catools s390x 1.18.3-1 [207 kB]
320s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
322s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-kernsmooth s390x 2.23-26-1 [94.7 kB]
322s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gdata all 3.0.1-1 [491 kB]
322s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gplots all 3.2.0-1 [484 kB]
323s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB]
323s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB]
323s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
323s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB]
324s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB]
324s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
326s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB]
326s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
326s Get:119 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
326s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
327s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
327s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
329s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
329s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
329s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
329s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB]
329s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB]
330s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
330s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB]
330s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB]
330s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
330s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB]
331s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB]
332s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB]
333s Get:135 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
333s Get:136 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
335s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcppeigen s390x 0.3.4.0.2-1 [1429 kB]
337s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
337s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ebseq s390x 2.4.0-2 [1292 kB]
338s Preconfiguring packages ...
338s Fetched 158 MB in 2min 24s (1095 kB/s)
338s Selecting previously unselected package libisl23:s390x.
338s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
338s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
338s Unpacking libisl23:s390x (0.27-1) ...
338s Selecting previously unselected package libmpc3:s390x.
338s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
338s Unpacking libmpc3:s390x (1.3.1-1build2) ...
338s Selecting previously unselected package cpp-14-s390x-linux-gnu.
338s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
338s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package cpp-14.
339s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package cpp-s390x-linux-gnu.
339s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package cpp.
339s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking cpp (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package libcc1-0:s390x.
339s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libgomp1:s390x.
339s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libitm1:s390x.
339s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libasan8:s390x.
339s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libubsan1:s390x.
339s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libgcc-14-dev:s390x.
339s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package gcc-14-s390x-linux-gnu.
339s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package gcc-14.
339s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package gcc-s390x-linux-gnu.
339s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package gcc.
339s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking gcc (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package libstdc++-14-dev:s390x.
339s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package g++-14-s390x-linux-gnu.
339s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package g++-14.
339s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking g++-14 (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package g++-s390x-linux-gnu.
339s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package g++.
339s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking g++ (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package build-essential.
339s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
339s Unpacking build-essential (12.10ubuntu1) ...
339s Selecting previously unselected package dctrl-tools.
339s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
339s Unpacking dctrl-tools (2.24-3build3) ...
340s Selecting previously unselected package libfreetype6:s390x.
340s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
340s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
340s Selecting previously unselected package fonts-dejavu-mono.
340s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
340s Unpacking fonts-dejavu-mono (2.37-8) ...
340s Selecting previously unselected package fonts-dejavu-core.
340s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
340s Unpacking fonts-dejavu-core (2.37-8) ...
340s Selecting previously unselected package fontconfig-config.
340s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
340s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
340s Selecting previously unselected package libfontconfig1:s390x.
340s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
340s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
340s Selecting previously unselected package fontconfig.
340s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
340s Unpacking fontconfig (2.15.0-2ubuntu1) ...
340s Selecting previously unselected package libgfortran5:s390x.
340s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
340s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
340s Selecting previously unselected package libgfortran-14-dev:s390x.
340s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
340s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gfortran-14.
340s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gfortran-s390x-linux-gnu.
340s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package gfortran.
340s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package icu-devtools.
340s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
340s Unpacking icu-devtools (76.1-1ubuntu2) ...
340s Selecting previously unselected package libblas3:s390x.
340s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
340s Unpacking libblas3:s390x (3.12.1-2) ...
340s Selecting previously unselected package libblas-dev:s390x.
340s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
340s Unpacking libblas-dev:s390x (3.12.1-2) ...
340s Selecting previously unselected package libboost1.83-dev:s390x.
340s Preparing to unpack .../038-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ...
340s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
341s Selecting previously unselected package libboost-dev:s390x.
341s Preparing to unpack .../039-libboost-dev_1.83.0.2ubuntu1_s390x.deb ...
341s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ...
341s Selecting previously unselected package libbz2-dev:s390x.
341s Preparing to unpack .../040-libbz2-dev_1.0.8-6_s390x.deb ...
341s Unpacking libbz2-dev:s390x (1.0.8-6) ...
341s Selecting previously unselected package libpixman-1-0:s390x.
341s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_s390x.deb ...
341s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
341s Selecting previously unselected package libxcb-render0:s390x.
341s Preparing to unpack .../042-libxcb-render0_1.17.0-2_s390x.deb ...
341s Unpacking libxcb-render0:s390x (1.17.0-2) ...
341s Selecting previously unselected package libxcb-shm0:s390x.
341s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_s390x.deb ...
341s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
341s Selecting previously unselected package libxrender1:s390x.
341s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
341s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
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342s Selecting previously unselected package libpango-1.0-0:s390x.
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342s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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342s Selecting previously unselected package libpcre2-16-0:s390x.
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342s Selecting previously unselected package zlib1g-dev:s390x.
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342s Selecting previously unselected package libpng-dev:s390x.
342s Preparing to unpack .../075-libpng-dev_1.6.47-1_s390x.deb ...
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342s Selecting previously unselected package libreadline-dev:s390x.
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342s Selecting previously unselected package libsharpyuv0:s390x.
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342s Selecting previously unselected package libsm6:s390x.
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342s Selecting previously unselected package libjbig0:s390x.
342s Preparing to unpack .../080-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
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342s Selecting previously unselected package libwebp7:s390x.
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342s Selecting previously unselected package libtiff6:s390x.
342s Preparing to unpack .../082-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
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342s Selecting previously unselected package libxft2:s390x.
342s Preparing to unpack .../083-libxft2_2.3.6-1build1_s390x.deb ...
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342s Selecting previously unselected package libxss1:s390x.
342s Preparing to unpack .../084-libxss1_1%3a1.2.3-1build3_s390x.deb ...
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342s Selecting previously unselected package libtk8.6:s390x.
342s Preparing to unpack .../085-libtk8.6_8.6.16-1_s390x.deb ...
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342s Selecting previously unselected package libxt6t64:s390x.
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342s Selecting previously unselected package zip.
342s Preparing to unpack .../087-zip_3.0-14ubuntu2_s390x.deb ...
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342s Preparing to unpack .../088-unzip_6.0-28ubuntu6_s390x.deb ...
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342s Selecting previously unselected package xdg-utils.
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342s Selecting previously unselected package r-base-core.
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342s Selecting previously unselected package r-cran-littler.
342s Preparing to unpack .../091-r-cran-littler_0.3.20-2_s390x.deb ...
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343s Selecting previously unselected package libtirpc-dev:s390x.
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344s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
344s Setting up libpixman-1-0:s390x (0.44.0-3) ...
344s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
344s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
344s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
344s Setting up libdatrie1:s390x (0.2.13-3build1) ...
344s Setting up libxcb-render0:s390x (1.17.0-2) ...
344s Setting up unzip (6.0-28ubuntu6) ...
344s Setting up x11-common (1:7.7+23ubuntu3) ...
344s Setting up libdeflate0:s390x (1.23-1) ...
344s Setting up libxcb-shm0:s390x (1.17.0-2) ...
344s Setting up libreadline-dev:s390x (8.2-6) ...
344s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
344s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
344s Setting up libpcre2-16-0:s390x (10.45-1) ...
344s Setting up zip (3.0-14ubuntu2) ...
344s Setting up libpcre2-32-0:s390x (10.45-1) ...
344s Setting up libblas3:s390x (3.12.1-2) ...
344s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
344s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
344s Setting up libpkgconf3:s390x (1.8.1-4) ...
344s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
344s Setting up fonts-dejavu-mono (2.37-8) ...
344s Setting up libmpc3:s390x (1.3.1-1build2) ...
344s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
344s Setting up icu-devtools (76.1-1ubuntu2) ...
344s Setting up fonts-dejavu-core (2.37-8) ...
344s Setting up pkgconf-bin (1.8.1-4) ...
344s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
344s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
344s Setting up libwebp7:s390x (1.5.0-0.1) ...
344s Setting up liblzma-dev:s390x (5.6.4-1) ...
344s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
344s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
344s Setting up libpcre2-posix3:s390x (10.45-1) ...
344s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
344s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
344s Setting up libthai-data (0.1.29-2build1) ...
344s Setting up libxss1:s390x (1:1.2.3-1build3) ...
344s Setting up libpaper2:s390x (2.2.5-0.3) ...
344s Setting up libisl23:s390x (0.27-1) ...
344s Setting up libdeflate-dev:s390x (1.23-1) ...
344s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
344s Setting up xdg-utils (1.2.1-2ubuntu1) ...
344s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
344s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
344s Setting up libblas-dev:s390x (3.12.1-2) ...
344s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
344s Setting up dctrl-tools (2.24-3build3) ...
344s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
344s Setting up libbz2-dev:s390x (1.0.8-6) ...
344s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
344s Setting up libice6:s390x (2:1.1.1-1) ...
344s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
344s Setting up liblapack3:s390x (3.12.1-2) ...
344s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
344s Setting up libpcre2-dev:s390x (10.45-1) ...
344s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
344s Setting up libpng-dev:s390x (1.6.47-1) ...
344s Setting up libpaper-utils (2.2.5-0.3) ...
344s Setting up pkgconf:s390x (1.8.1-4) ...
344s Setting up libthai0:s390x (0.1.29-2build1) ...
344s Setting up liblapack-dev:s390x (3.12.1-2) ...
344s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
344s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
344s Setting up cpp-14 (14.2.0-17ubuntu3) ...
344s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
344s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
344s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
344s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
344s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
344s Setting up libsm6:s390x (2:1.2.4-1) ...
344s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
344s Setting up fontconfig (2.15.0-2ubuntu1) ...
346s Regenerating fonts cache... done.
346s Setting up libxft2:s390x (2.3.6-1build1) ...
346s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
346s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
346s Setting up libtk8.6:s390x (8.6.16-1) ...
346s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
346s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
346s Setting up libcairo2:s390x (1.18.2-2) ...
346s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
346s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
346s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
346s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
346s Setting up cpp (4:14.2.0-1ubuntu1) ...
346s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
346s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
346s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
346s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
346s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
346s Setting up gcc-14 (14.2.0-17ubuntu3) ...
346s Setting up r-base-core (4.4.3-1) ...
346s Creating config file /etc/R/Renviron with new version
346s Setting up r-cran-crayon (1.5.3-1) ...
346s Setting up r-cran-lattice (0.22-6-1) ...
346s Setting up r-cran-ps (1.9.0-1) ...
346s Setting up g++-14 (14.2.0-17ubuntu3) ...
346s Setting up r-cran-r6 (2.6.1-1) ...
346s Setting up r-cran-pkgkitten (0.2.4-1) ...
346s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
346s Setting up r-cran-magrittr (2.0.3-1) ...
346s Setting up r-cran-littler (0.3.20-2) ...
346s Setting up r-cran-bh (1.84.0-1) ...
346s Setting up r-cran-fs (1.6.5+dfsg-1) ...
346s Setting up r-cran-rcpp (1.0.14-1) ...
346s Setting up r-cran-brio (1.1.5-1) ...
346s Setting up r-cran-diffobj (0.3.5-1) ...
346s Setting up r-bioc-biocgenerics (0.52.0-2) ...
346s Setting up r-cran-rlang (1.1.5-1) ...
346s Setting up littler (0.3.20-2) ...
346s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
346s Setting up r-cran-withr (3.0.2+dfsg-1) ...
346s Setting up r-cran-processx (3.8.6-1) ...
346s Setting up r-cran-praise (1.0.0-4build1) ...
346s Setting up r-cran-digest (0.6.37-1) ...
346s Setting up r-cran-evaluate (1.0.3-1) ...
346s Setting up r-cran-mass (7.3-64-1) ...
346s Setting up r-cran-gtools (3.9.5-1) ...
346s Setting up r-cran-glue (1.8.0-1) ...
346s Setting up r-cran-cli (3.6.4-1) ...
346s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
346s Setting up r-cran-bitops (1.0-9-1) ...
346s Setting up r-cran-rprojroot (2.0.4-2) ...
346s Setting up gcc (4:14.2.0-1ubuntu1) ...
346s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
346s Setting up r-cran-waldo (0.6.1-2) ...
346s Setting up r-cran-matrix (1.7-3-1) ...
346s Setting up r-cran-kernsmooth (2.23-26-1) ...
346s Setting up r-cran-blockmodeling (1.1.5-1) ...
346s Setting up g++ (4:14.2.0-1ubuntu1) ...
346s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
346s Setting up build-essential (12.10ubuntu1) ...
346s Setting up r-cran-catools (1.18.3-1) ...
346s Setting up r-cran-gdata (3.0.1-1) ...
346s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
346s Setting up r-cran-callr (3.7.6-1) ...
346s Setting up r-cran-desc (1.4.3-1) ...
346s Setting up gfortran (4:14.2.0-1ubuntu1) ...
346s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
346s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
346s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
346s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
346s Setting up r-cran-pkgbuild (1.4.6-1) ...
346s Setting up r-cran-gplots (3.2.0-1) ...
346s Setting up r-cran-pkgload (1.4.0-1) ...
346s Setting up r-base-dev (4.4.3-1) ...
346s Setting up r-cran-testthat (3.2.3-1) ...
346s Setting up r-bioc-ebseq (2.4.0-2) ...
346s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
346s Processing triggers for libc-bin (2.41-1ubuntu2) ...
346s Processing triggers for man-db (2.13.0-1) ...
347s Processing triggers for install-info (7.1.1-1) ...
349s autopkgtest [17:48:41]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
349s autopkgtest [17:48:41]: test pkg-r-autopkgtest: [-----------------------
349s Test: Try to load the R library EBSeq
349s 
349s R version 4.4.3 (2025-02-28) -- "Trophy Case"
349s Copyright (C) 2025 The R Foundation for Statistical Computing
349s Platform: s390x-ibm-linux-gnu
349s 
349s R is free software and comes with ABSOLUTELY NO WARRANTY.
349s You are welcome to redistribute it under certain conditions.
349s Type 'license()' or 'licence()' for distribution details.
349s 
349s R is a collaborative project with many contributors.
349s Type 'contributors()' for more information and
349s 'citation()' on how to cite R or R packages in publications.
349s 
349s Type 'demo()' for some demos, 'help()' for on-line help, or
349s 'help.start()' for an HTML browser interface to help.
349s Type 'q()' to quit R.
349s 
349s Loading required package: blockmodeling
349s > library('EBSeq')
350s To cite package 'blockmodeling' in publications please use package
350s citation and (at least) one of the articles:
350s 
350s   Žiberna, Aleš (2007). Generalized blockmodeling of valued networks.
350s   Social Networks 29(1), 105-126.
350s 
350s   Žiberna, Aleš (2008). Direct and indirect approaches to blockmodeling
350s   of valued networks in terms of regular equivalence. Journal of
350s   Mathematical Sociology 32(1), 57–84.
350s 
350s   Žiberna, Aleš (2014). Blockmodeling of multilevel networks. Social
350s   Networks 39, 46–61. https://doi.org/10.1016/j.socnet.2014.04.002.
350s 
350s   Žiberna, Aleš (2023).  Generalized and Classical Blockmodeling of
350s   Valued Networks, R package version 1.1.5.
350s   Cugmas, Marjan (2023).  Generalized and Classical Blockmodeling of
350s   Valued Networks, R package version 1.1.5.
350s 
350s To see these entries in BibTeX format, use 'format(<citation>,
350s bibtex=TRUE)', or 'toBibtex(.)'.
350s Loading required package: gplots
350s 
350s Attaching package: ‘gplots’
350s 
350s The following object is masked from ‘package:stats’:
350s 
350s     lowess
350s 
350s Loading required package: testthat
350s > 
350s > 
350s Other tests are currently unsupported!
350s They will be progressively added.
350s autopkgtest [17:48:42]: test pkg-r-autopkgtest: -----------------------]
351s autopkgtest [17:48:43]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
351s pkg-r-autopkgtest    PASS
351s autopkgtest [17:48:43]: @@@@@@@@@@@@@@@@@@@@ summary
351s pkg-r-autopkgtest    PASS
368s nova [W] Using flock in prodstack6-s390x
368s Creating nova instance adt-plucky-s390x-r-bioc-ebseq-20250315-174252-juju-7f2275-prod-proposed-migration-environment-2-df7d4479-b06d-44eb-9290-3442289e27ec from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
368s nova [W] Timed out waiting for 61163fe0-82a3-4864-a2aa-3b022181ad87 to get deleted.