0s autopkgtest [17:42:36]: starting date and time: 2025-03-15 17:42:36+0000
  0s autopkgtest [17:42:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:42:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p7sx2kza/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-dropletutils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-17.secgroup --name adt-plucky-s390x-r-bioc-dropletutils-20250315-174236-juju-7f2275-prod-proposed-migration-environment-2-e36477f2-1683-4e98-8b31-bd24fbaccf2b --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
109s autopkgtest [17:44:25]: testbed dpkg architecture: s390x
109s autopkgtest [17:44:25]: testbed apt version: 2.9.33
109s autopkgtest [17:44:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup
109s autopkgtest [17:44:25]: testbed release detected to be: None
110s autopkgtest [17:44:26]: updating testbed package index (apt update)
110s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
111s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
111s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
111s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
111s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
111s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
111s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
111s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
111s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
111s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
111s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
111s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
111s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
111s Fetched 1073 kB in 1s (1075 kB/s)
112s Reading package lists...
113s Reading package lists...
113s Building dependency tree...
113s Reading state information...
113s Calculating upgrade...
113s Calculating upgrade...
113s The following packages were automatically installed and are no longer required:
113s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
113s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
113s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
113s   linux-tools-6.11.0-8-generic
113s Use 'sudo apt autoremove' to remove them.
113s The following packages will be upgraded:
113s   pinentry-curses python3-jinja2 strace
113s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
113s Need to get 652 kB of archives.
113s After this operation, 27.6 kB of additional disk space will be used.
113s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
114s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
114s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
114s Fetched 652 kB in 1s (1010 kB/s)
114s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
114s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
114s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
114s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
114s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
114s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
114s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
114s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
114s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
115s Setting up strace (6.13+ds-1ubuntu1) ...
115s Processing triggers for man-db (2.13.0-1) ...
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
115s Solving dependencies...
116s The following packages will be REMOVED:
116s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
116s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
116s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
116s   linux-tools-6.11.0-8-generic*
116s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
116s After this operation, 167 MB disk space will be freed.
116s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
116s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
116s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
116s Removing libpython3.12t64:s390x (3.12.9-1) ...
116s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
116s Removing libnsl2:s390x (1.3.0-3build3) ...
116s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
116s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
116s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
117s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
117s Processing triggers for libc-bin (2.41-1ubuntu1) ...
117s (Reading database ... 
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(Reading database ... 56328 files and directories currently installed.)
117s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
117s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
117s autopkgtest [17:44:33]: upgrading testbed (apt dist-upgrade and autopurge)
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
118s Starting 2 pkgProblemResolver with broken count: 0
118s Done
118s Entering ResolveByKeep
118s 
118s Calculating upgrade...
119s The following packages will be upgraded:
119s   libc-bin libc-dev-bin libc6 libc6-dev locales
119s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Need to get 9512 kB of archives.
119s After this operation, 8192 B of additional disk space will be used.
119s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
119s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
119s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
120s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
120s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
121s Preconfiguring packages ...
121s Fetched 9512 kB in 2s (4630 kB/s)
121s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
121s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
121s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
121s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
121s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
121s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
121s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
121s Setting up libc6:s390x (2.41-1ubuntu2) ...
121s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
121s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
121s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
121s Setting up libc-bin (2.41-1ubuntu2) ...
121s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
121s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
121s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
121s Setting up locales (2.41-1ubuntu2) ...
122s Generating locales (this might take a while)...
123s   en_US.UTF-8... done
123s Generation complete.
123s Setting up libc-dev-bin (2.41-1ubuntu2) ...
123s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
123s Processing triggers for man-db (2.13.0-1) ...
123s Processing triggers for systemd (257.3-1ubuntu3) ...
124s Reading package lists...
124s Building dependency tree...
124s Reading state information...
124s Starting pkgProblemResolver with broken count: 0
124s Starting 2 pkgProblemResolver with broken count: 0
124s Done
124s Solving dependencies...
125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
125s autopkgtest [17:44:41]: rebooting testbed after setup commands that affected boot
138s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
148s autopkgtest [17:45:04]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
151s autopkgtest [17:45:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dropletutils
153s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dropletutils 1.26.0+ds-2build1 (dsc) [2607 B]
153s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dropletutils 1.26.0+ds-2build1 (tar) [85.5 kB]
153s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dropletutils 1.26.0+ds-2build1 (diff) [3908 B]
153s gpgv: Signature made Tue Jan 28 12:35:24 2025 UTC
153s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
153s gpgv: Can't check signature: No public key
153s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dropletutils_1.26.0+ds-2build1.dsc: no acceptable signature found
153s autopkgtest [17:45:09]: testing package r-bioc-dropletutils version 1.26.0+ds-2build1
154s autopkgtest [17:45:10]: build not needed
157s autopkgtest [17:45:13]: test pkg-r-autopkgtest: preparing testbed
157s Reading package lists...
157s Building dependency tree...
157s Reading state information...
157s Starting pkgProblemResolver with broken count: 0
157s Starting 2 pkgProblemResolver with broken count: 0
157s Done
158s The following NEW packages will be installed:
158s   build-essential comerr-dev cpp cpp-14 cpp-14-s390x-linux-gnu
158s   cpp-s390x-linux-gnu dctrl-tools fontconfig fontconfig-config
158s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
158s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14
158s   g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu
158s   gcc-s390x-linux-gnu gfortran gfortran-14 gfortran-14-s390x-linux-gnu
158s   gfortran-s390x-linux-gnu hdf5-helpers icu-devtools javascript-common
158s   krb5-multidev libaec-dev libaec0 libasan8 libbibtex-parser-perl libblas-dev
158s   libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev libbz2-dev
158s   libcairo2 libcc1-0 libcurl4-openssl-dev libdatrie1 libdeflate-dev
158s   libdeflate0 libevent-2.1-7t64 libfontconfig1 libfreetype6 libgcc-14-dev
158s   libgfortran-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
158s   libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64
158s   libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310
158s   libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev
158s   libice6 libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0
158s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
158s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
158s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
158s   libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js
158s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
158s   libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12
158s   libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3
158s   liblatex-tounicode-perl libldap-dev liblua5.4-0 liblzma-dev libmpc3 libmpfi0
158s   libncurses-dev libnghttp2-dev libp11-kit-dev libpango-1.0-0
158s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
158s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
158s   libpng-dev libpotrace0 libpsl-dev libptexenc1 libreadline-dev librtmp-dev
158s   libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssl-dev libstdc++-14-dev
158s   libsynctex2 libsz2 libtasn1-6-dev libtcl8.6 libteckit0 libtexlua53-5
158s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libunbound8
158s   libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4
158s   libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev
158s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
158s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
158s   r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics
158s   r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-delayedarray
158s   r-bioc-delayedmatrixstats r-bioc-dropletutils r-bioc-edger
158s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
158s   r-bioc-hdf5array r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics
158s   r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays
158s   r-bioc-s4vectors r-bioc-scuttle r-bioc-singlecellexperiment
158s   r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment
158s   r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass
158s   r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown r-cran-brio
158s   r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools
158s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-desc
158s   r-cran-diffobj r-cran-digest r-cran-dqrng r-cran-evaluate r-cran-fastmap
158s   r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger
158s   r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools
158s   r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr
158s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
158s   r-cran-locfit r-cran-magrittr r-cran-matrix r-cran-matrixstats
158s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgbuild r-cran-pkgkitten
158s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-promises r-cran-ps
158s   r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs
158s   r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass
158s   r-cran-shiny r-cran-sitmo r-cran-snow r-cran-sourcetools r-cran-statmod
158s   r-cran-sys r-cran-testthat r-cran-tinytex r-cran-waldo r-cran-withr
158s   r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base
158s   texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common
158s   xdg-utils zip zlib1g-dev
158s 0 upgraded, 297 newly installed, 0 to remove and 0 not upgraded.
158s Need to get 422 MB of archives.
158s After this operation, 1443 MB of additional disk space will be used.
158s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
159s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
159s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
161s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
161s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
161s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
161s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
161s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
161s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
161s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
162s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
162s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
162s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
167s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
167s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
167s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
167s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
168s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
170s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
170s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
170s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
170s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
170s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
170s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
170s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
170s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
170s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
170s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
170s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
170s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
170s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
170s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
171s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
171s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
171s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
171s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
173s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
173s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
173s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
173s Get:40 http://ftpmaster.internal/ubuntu plucky/universe s390x hdf5-helpers s390x 1.14.5+repack-3 [17.0 kB]
173s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
173s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B]
173s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x comerr-dev s390x 2.1-1.47.2-1ubuntu1 [44.7 kB]
173s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libgssrpc4t64 s390x 1.21.3-4ubuntu2 [59.1 kB]
173s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libkadm5clnt-mit12 s390x 1.21.3-4ubuntu2 [40.6 kB]
173s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libkdb5-10t64 s390x 1.21.3-4ubuntu2 [42.0 kB]
173s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libkadm5srv-mit12 s390x 1.21.3-4ubuntu2 [55.4 kB]
173s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x krb5-multidev s390x 1.21.3-4ubuntu2 [125 kB]
173s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB]
173s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
173s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
173s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
173s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
173s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
173s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libsnappy1v5 s390x 1.2.1-1 [33.0 kB]
173s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x libblosc1 s390x 1.21.5+ds-1build1 [27.7 kB]
173s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB]
175s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
175s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libbrotli-dev s390x 1.1.0-2build4 [395 kB]
175s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
175s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
175s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
175s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
175s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
175s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
175s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libidn2-dev s390x 2.3.7-2build2 [122 kB]
175s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libkrb5-dev s390x 1.21.3-4ubuntu2 [11.9 kB]
175s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libldap-dev s390x 2.6.9+dfsg-1~exp2ubuntu1 [316 kB]
175s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
175s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
175s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
175s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libnghttp2-dev s390x 1.64.0-1 [121 kB]
175s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libpsl-dev s390x 0.21.2-1.1build1 [77.3 kB]
175s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libgmpxx4ldbl s390x 2:6.3.0+dfsg-3ubuntu1 [10.1 kB]
175s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libgmp-dev s390x 2:6.3.0+dfsg-3ubuntu1 [424 kB]
175s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10 [145 kB]
175s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libunbound8 s390x 1.22.0-1ubuntu1 [462 kB]
175s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls-dane0t64 s390x 3.8.9-2ubuntu2 [24.5 kB]
175s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls-openssl27t64 s390x 3.8.9-2ubuntu2 [24.5 kB]
175s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit-dev s390x 0.25.5-2ubuntu3 [23.5 kB]
175s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtasn1-6-dev s390x 4.20.0-2 [94.8 kB]
175s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x nettle-dev s390x 3.10.1-1 [1198 kB]
175s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls28-dev s390x 3.8.9-2ubuntu2 [1016 kB]
176s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
176s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x librtmp-dev s390x 2.4+20151223.gitfa8646d.1-2build7 [69.2 kB]
176s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libssl-dev s390x 3.4.1-1ubuntu1 [2429 kB]
176s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libssh2-1-dev s390x 1.11.1-1 [287 kB]
176s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libzstd-dev s390x 1.5.6+dfsg-2 [408 kB]
176s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libcurl4-openssl-dev s390x 8.12.1-3ubuntu1 [513 kB]
176s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
176s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
176s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
176s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
176s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
176s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B]
176s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB]
177s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-cpp-310 s390x 1.14.5+repack-3 [117 kB]
177s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-fortran-310 s390x 1.14.5+repack-3 [115 kB]
177s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB]
177s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-fortran-310 s390x 1.14.5+repack-3 [32.5 kB]
177s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-cpp-310 s390x 1.14.5+repack-3 [11.7 kB]
177s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
177s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
177s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
177s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
177s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
177s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec-dev s390x 1.1.3-1 [23.3 kB]
177s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-dev s390x 1.14.5+repack-3 [3385 kB]
179s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x libhnswlib-dev all 0.8.0-1build3 [24.4 kB]
179s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
179s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
179s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
187s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
187s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
187s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
187s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
187s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
187s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
188s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
188s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
188s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
188s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
188s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
188s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
188s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
188s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
188s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
188s Get:128 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
188s Get:129 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
190s Get:130 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
194s Get:131 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
194s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
194s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
194s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
194s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
194s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
194s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
195s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
195s Get:139 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
195s Get:140 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
195s Get:141 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
195s Get:142 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
195s Get:143 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
195s Get:144 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
195s Get:145 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
196s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
196s Get:147 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
196s Get:148 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
196s Get:149 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
196s Get:150 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
196s Get:151 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
196s Get:152 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
197s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
197s Get:154 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
197s Get:155 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
197s Get:156 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
197s Get:157 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
197s Get:158 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
197s Get:159 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
197s Get:160 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
198s Get:161 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
198s Get:162 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
198s Get:163 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
198s Get:164 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
198s Get:165 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
198s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
198s Get:167 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
198s Get:168 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
199s Get:169 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
199s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
217s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
217s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
217s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
218s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
218s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
218s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
218s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
261s Get:178 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
261s Get:179 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
261s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
261s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
261s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
262s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-assorthead all 1.0.1+ds-2 [194 kB]
262s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
263s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
267s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
268s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
268s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
270s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
272s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB]
272s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
272s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB]
273s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
273s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
273s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB]
275s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB]
277s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
277s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
279s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-beachmat s390x 2.22.0+ds-2 [1038 kB]
279s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
281s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB]
281s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
282s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
282s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
282s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
282s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB]
282s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
282s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
282s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB]
283s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
283s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
284s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
284s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
285s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
286s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
286s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
286s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
286s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
286s Get:219 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
292s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB]
292s Get:221 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
292s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
292s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
293s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
294s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
294s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
294s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
294s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
294s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
295s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
295s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
295s Get:232 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
296s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
300s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
301s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
301s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
301s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
301s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
301s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
302s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
302s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
302s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
302s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
303s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB]
303s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
303s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
305s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
306s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
307s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
307s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
307s Get:251 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
307s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
313s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
336s Get:254 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
338s Get:255 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
413s Get:256 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
413s Get:257 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
413s Get:258 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsematrixstats s390x 1.18.0+dfsg-2 [867 kB]
414s Get:259 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB]
414s Get:260 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
415s Get:261 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
415s Get:262 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
415s Get:263 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
415s Get:264 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
416s Get:265 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
416s Get:266 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
427s Get:267 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
430s Get:268 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB]
432s Get:269 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
432s Get:270 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB]
433s Get:271 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhdf5lib s390x 1.28.0+dfsg-2build1 [97.3 kB]
433s Get:272 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhdf5filters s390x 1.18.0+dfsg-2 [124 kB]
433s Get:273 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhdf5 s390x 2.50.2+dfsg-1build1 [827 kB]
434s Get:274 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-hdf5array s390x 1.34.0-2build1 [8794 kB]
441s Get:275 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB]
442s Get:276 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB]
443s Get:277 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-locfit s390x 1.5-9.12-1 [539 kB]
444s Get:278 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-edger s390x 4.4.2+dfsg-1 [1125 kB]
445s Get:279 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.methodss3 all 1.8.2-1 [84.0 kB]
445s Get:280 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.oo all 1.27.0-1 [979 kB]
446s Get:281 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.utils all 2.13.0-1 [1423 kB]
448s Get:282 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sitmo s390x 2.0.2-1 [129 kB]
448s Get:283 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dqrng s390x 0.3.2+dfsg-1 [165 kB]
448s Get:284 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-scuttle s390x 1.16.0+dfsg-3 [459 kB]
448s Get:285 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-dropletutils s390x 1.26.0+ds-2build1 [425 kB]
449s Get:286 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB]
449s Get:287 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB]
449s Get:288 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB]
449s Get:289 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB]
450s Get:290 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB]
450s Get:291 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB]
451s Get:292 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB]
451s Get:293 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB]
451s Get:294 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB]
451s Get:295 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB]
451s Get:296 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB]
451s Get:297 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB]
453s Preconfiguring packages ...
453s Fetched 422 MB in 4min 55s (1432 kB/s)
454s Selecting previously unselected package libisl23:s390x.
454s (Reading database ... 
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(Reading database ... 25%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
454s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
454s Unpacking libisl23:s390x (0.27-1) ...
454s Selecting previously unselected package libmpc3:s390x.
454s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
454s Unpacking libmpc3:s390x (1.3.1-1build2) ...
454s Selecting previously unselected package cpp-14-s390x-linux-gnu.
454s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
454s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
454s Selecting previously unselected package cpp-14.
454s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
454s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
454s Selecting previously unselected package cpp-s390x-linux-gnu.
454s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
454s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
454s Selecting previously unselected package cpp.
454s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
454s Unpacking cpp (4:14.2.0-1ubuntu1) ...
454s Selecting previously unselected package libcc1-0:s390x.
454s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
454s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
454s Selecting previously unselected package libgomp1:s390x.
454s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
454s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
454s Selecting previously unselected package libitm1:s390x.
454s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
454s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
454s Selecting previously unselected package libasan8:s390x.
454s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
454s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
454s Selecting previously unselected package libubsan1:s390x.
454s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
454s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
454s Selecting previously unselected package libgcc-14-dev:s390x.
454s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
454s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
454s Selecting previously unselected package gcc-14-s390x-linux-gnu.
454s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
454s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
454s Selecting previously unselected package gcc-14.
454s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
454s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
454s Selecting previously unselected package gcc-s390x-linux-gnu.
454s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
454s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
454s Selecting previously unselected package gcc.
454s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
454s Unpacking gcc (4:14.2.0-1ubuntu1) ...
454s Selecting previously unselected package libstdc++-14-dev:s390x.
454s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
454s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
454s Selecting previously unselected package g++-14-s390x-linux-gnu.
454s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
454s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
455s Selecting previously unselected package g++-14.
455s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
455s Unpacking g++-14 (14.2.0-17ubuntu3) ...
455s Selecting previously unselected package g++-s390x-linux-gnu.
455s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
455s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
455s Selecting previously unselected package g++.
455s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
455s Unpacking g++ (4:14.2.0-1ubuntu1) ...
455s Selecting previously unselected package build-essential.
455s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
455s Unpacking build-essential (12.10ubuntu1) ...
455s Selecting previously unselected package dctrl-tools.
455s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
455s Unpacking dctrl-tools (2.24-3build3) ...
455s Selecting previously unselected package libfreetype6:s390x.
455s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
455s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
455s Selecting previously unselected package fonts-dejavu-mono.
455s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
455s Unpacking fonts-dejavu-mono (2.37-8) ...
455s Selecting previously unselected package fonts-dejavu-core.
455s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
455s Unpacking fonts-dejavu-core (2.37-8) ...
455s Selecting previously unselected package fontconfig-config.
455s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
455s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
455s Selecting previously unselected package libfontconfig1:s390x.
455s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
455s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
455s Selecting previously unselected package fontconfig.
455s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
455s Unpacking fontconfig (2.15.0-2ubuntu1) ...
455s Selecting previously unselected package fonts-font-awesome.
455s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
455s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
455s Selecting previously unselected package fonts-glyphicons-halflings.
455s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
455s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
455s Selecting previously unselected package fonts-lmodern.
455s Preparing to unpack .../031-fonts-lmodern_2.005-1_all.deb ...
455s Unpacking fonts-lmodern (2.005-1) ...
455s Selecting previously unselected package fonts-mathjax.
455s Preparing to unpack .../032-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
455s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
455s Selecting previously unselected package libgfortran5:s390x.
455s Preparing to unpack .../033-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
455s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
455s Selecting previously unselected package libgfortran-14-dev:s390x.
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455s Selecting previously unselected package comerr-dev:s390x.
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457s Selecting previously unselected package libpkgconf3:s390x.
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457s Selecting previously unselected package libevent-2.1-7t64:s390x.
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457s Selecting previously unselected package libgnutls-dane0t64:s390x.
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457s Selecting previously unselected package libgnutls-openssl27t64:s390x.
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457s Selecting previously unselected package libp11-kit-dev:s390x.
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457s Selecting previously unselected package libtasn1-6-dev:s390x.
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457s Selecting previously unselected package libgnutls28-dev:s390x.
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457s Selecting previously unselected package zlib1g-dev:s390x.
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457s Selecting previously unselected package librtmp-dev:s390x.
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457s Selecting previously unselected package libssl-dev:s390x.
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457s Selecting previously unselected package libcurl4-openssl-dev:s390x.
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457s Selecting previously unselected package libdatrie1:s390x.
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457s Selecting previously unselected package libgraphite2-3:s390x.
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457s Selecting previously unselected package libhdf5-fortran-310:s390x.
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458s Selecting previously unselected package libjpeg-turbo8:s390x.
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459s Selecting previously unselected package r-cran-littler.
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461s Selecting previously unselected package liblzma-dev:s390x.
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462s Selecting previously unselected package r-bioc-biocparallel.
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462s Selecting previously unselected package r-cran-base64enc.
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462s Selecting previously unselected package r-cran-knitr.
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462s Selecting previously unselected package r-cran-cachem.
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462s Selecting previously unselected package r-cran-jquerylib.
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462s Selecting previously unselected package r-cran-jsonlite.
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462s Selecting previously unselected package r-cran-cli.
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462s Selecting previously unselected package r-cran-glue.
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462s Selecting previously unselected package r-cran-lifecycle.
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462s Selecting previously unselected package r-cran-memoise.
462s Preparing to unpack .../226-r-cran-memoise_2.0.1-1_all.deb ...
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462s Selecting previously unselected package r-cran-mime.
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462s Selecting previously unselected package r-cran-fs.
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462s Selecting previously unselected package r-cran-r6.
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462s Selecting previously unselected package r-cran-rappdirs.
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462s Selecting previously unselected package r-cran-sass.
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462s Selecting previously unselected package r-cran-bslib.
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463s Selecting previously unselected package r-cran-fontawesome.
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463s Unpacking r-cran-fontawesome (0.5.3-1) ...
463s Selecting previously unselected package r-cran-tinytex.
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463s Selecting previously unselected package libjs-modernizr.
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463s Selecting previously unselected package r-cran-later.
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463s Selecting previously unselected package r-cran-magrittr.
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463s Selecting previously unselected package r-cran-promises.
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463s Selecting previously unselected package r-cran-httpuv.
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463s Selecting previously unselected package r-cran-xtable.
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463s Selecting previously unselected package r-cran-sourcetools.
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463s Selecting previously unselected package r-cran-withr.
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463s Selecting previously unselected package r-cran-commonmark.
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463s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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463s Selecting previously unselected package r-cran-shiny.
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463s Selecting previously unselected package r-cran-rmarkdown.
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463s Selecting previously unselected package r-cran-bookdown.
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463s Selecting previously unselected package r-cran-biocmanager.
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463s Selecting previously unselected package tex-common.
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467s Selecting previously unselected package r-bioc-biocversion.
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468s Selecting previously unselected package r-bioc-biocstyle.
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468s Selecting previously unselected package r-bioc-sparsematrixstats.
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468s Selecting previously unselected package r-bioc-delayedmatrixstats.
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468s Selecting previously unselected package r-cran-curl.
468s Preparing to unpack .../259-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ...
468s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
468s Selecting previously unselected package r-cran-sys.
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468s Selecting previously unselected package r-cran-askpass.
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468s Selecting previously unselected package r-cran-openssl.
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468s Selecting previously unselected package r-cran-httr.
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468s Selecting previously unselected package r-bioc-ucsc.utils.
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468s Selecting previously unselected package r-bioc-genomeinfodbdata.
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468s Selecting previously unselected package r-bioc-genomeinfodb.
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468s Selecting previously unselected package r-bioc-genomicranges.
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468s Selecting previously unselected package r-bioc-summarizedexperiment.
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468s Selecting previously unselected package r-bioc-singlecellexperiment.
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468s Selecting previously unselected package r-bioc-rhdf5lib.
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468s Selecting previously unselected package r-bioc-rhdf5filters.
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468s Selecting previously unselected package r-bioc-rhdf5.
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468s Selecting previously unselected package r-bioc-hdf5array.
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468s Selecting previously unselected package r-cran-statmod.
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468s Selecting previously unselected package r-bioc-limma.
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468s Selecting previously unselected package r-cran-locfit.
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468s Selecting previously unselected package r-bioc-edger.
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468s Selecting previously unselected package r-cran-r.methodss3.
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468s Selecting previously unselected package r-cran-r.oo.
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469s Setting up libice6:s390x (2:1.1.1-1) ...
469s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
469s Setting up liblapack3:s390x (3.12.1-2) ...
469s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
469s Setting up libgmp-dev:s390x (2:6.3.0+dfsg-3ubuntu1) ...
469s Setting up libpcre2-dev:s390x (10.45-1) ...
469s Setting up nettle-dev:s390x (3.10.1-1) ...
469s Setting up libkdb5-10t64:s390x (1.21.3-4ubuntu2) ...
469s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
469s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
469s Setting up libpng-dev:s390x (1.6.47-1) ...
469s Setting up libaec-dev:s390x (1.1.3-1) ...
469s Setting up libpaper-utils (2.2.5-0.3) ...
469s Setting up libbibtex-parser-perl (1.05+dfsg-1) ...
469s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
469s Setting up pkgconf:s390x (1.8.1-4) ...
469s Setting up libthai0:s390x (0.1.29-2build1) ...
469s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
469s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
469s Setting up pandoc (3.1.11.1+ds-2) ...
469s Setting up liblapack-dev:s390x (3.12.1-2) ...
469s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
469s Setting up libssh2-1-dev:s390x (1.11.1-1) ...
469s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
469s Setting up cpp-14 (14.2.0-17ubuntu3) ...
469s Setting up libhdf5-310:s390x (1.14.5+repack-3) ...
469s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
469s Setting up libkadm5srv-mit12:s390x (1.21.3-4ubuntu2) ...
469s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
469s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
469s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
469s Setting up libhdf5-fortran-310:s390x (1.14.5+repack-3) ...
469s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
469s Setting up libsm6:s390x (2:1.2.4-1) ...
469s Setting up krb5-multidev:s390x (1.21.3-4ubuntu2) ...
469s Setting up libhdf5-cpp-310:s390x (1.14.5+repack-3) ...
469s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
469s Setting up libgnutls28-dev:s390x (3.8.9-2ubuntu2) ...
469s Setting up libnghttp2-dev:s390x (1.64.0-1) ...
469s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ...
469s Setting up fontconfig (2.15.0-2ubuntu1) ...
471s Regenerating fonts cache... done.
471s Setting up libxft2:s390x (2.3.6-1build1) ...
471s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
471s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
471s Setting up libtk8.6:s390x (8.6.16-1) ...
471s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
471s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
471s Setting up libcairo2:s390x (1.18.2-2) ...
471s Setting up libkrb5-dev:s390x (1.21.3-4ubuntu2) ...
471s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
471s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
471s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
471s Setting up librtmp-dev:s390x (2.4+20151223.gitfa8646d.1-2build7) ...
471s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
471s Setting up cpp (4:14.2.0-1ubuntu1) ...
471s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
471s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
471s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
471s Setting up libhdf5-hl-cpp-310:s390x (1.14.5+repack-3) ...
471s Setting up libhdf5-hl-fortran-310:s390x (1.14.5+repack-3) ...
471s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
471s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
471s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
471s Setting up libxaw7:s390x (2:1.0.16-1) ...
471s Setting up gcc-14 (14.2.0-17ubuntu3) ...
471s Setting up libcurl4-openssl-dev:s390x (8.12.1-3ubuntu1) ...
471s Setting up r-base-core (4.4.3-1) ...
471s Creating config file /etc/R/Renviron with new version
471s Setting up r-cran-crayon (1.5.3-1) ...
471s Setting up libhdf5-dev (1.14.5+repack-3) ...
471s update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
471s Setting up r-cran-sourcetools (0.1.7-1-1) ...
471s Setting up r-cran-futile.options (1.0.1-3build1) ...
471s Setting up r-cran-lattice (0.22-6-1) ...
471s Setting up r-cran-ps (1.9.0-1) ...
471s Setting up r-cran-formatr (1.14-2) ...
471s Setting up r-cran-locfit (1.5-9.12-1) ...
471s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
471s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
471s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
471s Setting up r-cran-statmod (1.5.0-1) ...
471s Setting up r-cran-commonmark (1.9.2-2) ...
471s Setting up g++-14 (14.2.0-17ubuntu3) ...
471s Setting up r-cran-r6 (2.6.1-1) ...
471s Setting up r-cran-pkgkitten (0.2.4-1) ...
471s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
471s Setting up texlive-base (2024.20250114-1) ...
472s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
472s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
472s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
472s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
472s Setting up r-cran-magrittr (2.0.3-1) ...
472s Setting up r-cran-rappdirs (0.3.3-1) ...
472s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
472s Setting up r-cran-littler (0.3.20-2) ...
473s Setting up r-cran-bh (1.84.0-1) ...
473s Setting up r-cran-fs (1.6.5+dfsg-1) ...
473s Setting up r-cran-rcpp (1.0.14-1) ...
473s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
473s Setting up r-cran-codetools (0.2-20-1) ...
473s Setting up r-cran-brio (1.1.5-1) ...
473s Setting up r-cran-diffobj (0.3.5-1) ...
473s Setting up r-bioc-biocgenerics (0.52.0-2) ...
473s Setting up r-cran-rlang (1.1.5-1) ...
473s Setting up r-cran-matrixstats (1.5.0-1) ...
473s Setting up littler (0.3.20-2) ...
473s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
473s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
473s Setting up r-cran-xfun (0.51+dfsg-1) ...
473s Setting up r-cran-sys (3.4.3-1) ...
473s Setting up r-cran-withr (3.0.2+dfsg-1) ...
473s Setting up r-cran-processx (3.8.6-1) ...
473s Setting up r-cran-mime (0.12-2) ...
473s Setting up r-cran-praise (1.0.0-4build1) ...
473s Setting up r-cran-base64enc (0.1-3-3) ...
473s Setting up r-cran-abind (1.4-8-1) ...
473s Setting up r-cran-digest (0.6.37-1) ...
473s Setting up r-cran-yaml (2.3.10-1) ...
473s Setting up r-cran-lambda.r (1.2.4-2build1) ...
473s Setting up r-cran-evaluate (1.0.3-1) ...
473s Setting up r-cran-highr (0.11+dfsg-1) ...
473s Setting up r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ...
473s Setting up r-cran-snow (1:0.4.4-2) ...
473s Setting up r-cran-glue (1.8.0-1) ...
473s Setting up r-bioc-rhdf5filters (1.18.0+dfsg-2) ...
473s Setting up r-cran-xtable (1:1.8-4-2) ...
473s Setting up r-cran-cli (3.6.4-1) ...
473s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
473s Setting up r-bioc-biocversion (3.20.0-2) ...
473s Setting up r-cran-rprojroot (2.0.4-2) ...
473s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
473s Setting up gcc (4:14.2.0-1ubuntu1) ...
473s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
473s Setting up r-cran-askpass (1.2.1-1) ...
473s Setting up r-cran-fastmap (1.2.0-1) ...
473s Setting up r-cran-r.methodss3 (1.8.2-1) ...
473s Setting up r-bioc-biobase (2.66.0-2) ...
473s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
473s Setting up texlive-latex-base (2024.20250114-1) ...
473s Setting up r-cran-cpp11 (0.5.2-1) ...
473s Setting up r-cran-sitmo (2.0.2-1) ...
473s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
473s Setting up r-cran-futile.logger (1.4.3-4build1) ...
473s Setting up r-cran-waldo (0.6.1-2) ...
473s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
473s Setting up r-cran-later (1.4.1+dfsg-1) ...
473s Setting up r-cran-matrix (1.7-3-1) ...
473s Setting up r-cran-htmltools (0.5.8.1-1) ...
473s Setting up r-cran-tinytex (0.56-1) ...
473s Setting up r-cran-knitr (1.49+dfsg-1) ...
473s Setting up g++ (4:14.2.0-1ubuntu1) ...
473s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
473s Setting up r-cran-cachem (1.1.0-1) ...
473s Setting up r-cran-sass (0.4.9+dfsg-1) ...
473s Setting up build-essential (12.10ubuntu1) ...
473s Setting up r-bioc-iranges (2.40.1-2) ...
473s Setting up r-cran-dqrng (0.3.2+dfsg-1) ...
473s Setting up r-bioc-assorthead (1.0.1+ds-2) ...
473s Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ...
473s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
473s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
473s Setting up r-bioc-biocparallel (1.40.0-2) ...
473s Setting up r-cran-callr (3.7.6-1) ...
473s Setting up r-bioc-edger (4.4.2+dfsg-1) ...
473s Setting up r-cran-desc (1.4.3-1) ...
473s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ...
473s Setting up r-cran-fontawesome (0.5.3-1) ...
473s Setting up r-cran-r.oo (1.27.0-1) ...
473s Setting up gfortran (4:14.2.0-1ubuntu1) ...
473s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
473s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
473s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
473s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
473s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
473s Setting up texlive-bibtex-extra (2024.20250114-1) ...
473s Setting up r-cran-httr (1.4.7+dfsg-1) ...
473s Setting up r-cran-memoise (2.0.1-1) ...
473s Setting up r-cran-promises (1.3.2+dfsg-1) ...
473s Setting up r-bioc-xvector (0.46.0-2) ...
473s Setting up r-cran-pkgbuild (1.4.6-1) ...
473s Setting up r-cran-pkgload (1.4.0-1) ...
473s Setting up r-cran-r.utils (2.13.0-1) ...
473s Setting up r-base-dev (4.4.3-1) ...
473s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
473s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
473s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
473s Setting up r-cran-testthat (3.2.3-1) ...
473s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
473s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
473s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
473s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
473s Setting up r-bioc-hdf5array (1.34.0-2build1) ...
473s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
473s Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ...
473s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
473s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
473s Setting up r-bioc-beachmat (2.22.0+ds-2) ...
473s Setting up r-cran-bookdown (0.42+dfsg-1) ...
473s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
473s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
473s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ...
473s Setting up r-bioc-scuttle (1.16.0+dfsg-3) ...
473s Setting up r-bioc-dropletutils (1.26.0+ds-2build1) ...
473s Processing triggers for install-info (7.1.1-1) ...
473s Processing triggers for libc-bin (2.41-1ubuntu2) ...
473s Processing triggers for man-db (2.13.0-1) ...
474s Processing triggers for tex-common (6.19) ...
474s Running updmap-sys. This may take some time... done.
474s Running mktexlsr /var/lib/texmf ... done.
474s Building format(s) --all.
516s 	This may take some time... done.
517s autopkgtest [17:51:13]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
517s autopkgtest [17:51:13]: test pkg-r-autopkgtest: [-----------------------
518s Test: Try to load the R library DropletUtils
518s 
518s R version 4.4.3 (2025-02-28) -- "Trophy Case"
518s Copyright (C) 2025 The R Foundation for Statistical Computing
518s Platform: s390x-ibm-linux-gnu
518s 
518s R is free software and comes with ABSOLUTELY NO WARRANTY.
518s You are welcome to redistribute it under certain conditions.
518s Type 'license()' or 'licence()' for distribution details.
518s 
518s R is a collaborative project with many contributors.
518s Type 'contributors()' for more information and
518s 'citation()' on how to cite R or R packages in publications.
518s 
518s Type 'demo()' for some demos, 'help()' for on-line help, or
518s 'help.start()' for an HTML browser interface to help.
518s Type 'q()' to quit R.
518s 
518s > library('DropletUtils')
518s Loading required package: SingleCellExperiment
518s Loading required package: SummarizedExperiment
518s Loading required package: MatrixGenerics
518s Loading required package: matrixStats
518s 
518s Attaching package: ‘MatrixGenerics’
518s 
518s The following objects are masked from ‘package:matrixStats’:
518s 
518s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
518s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
518s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
518s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
518s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
518s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
518s     colWeightedMeans, colWeightedMedians, colWeightedSds,
518s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
518s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
518s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
518s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
518s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
518s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
518s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
518s     rowWeightedSds, rowWeightedVars
518s 
518s Loading required package: GenomicRanges
518s Loading required package: stats4
518s Loading required package: BiocGenerics
518s 
518s Attaching package: ‘BiocGenerics’
518s 
518s The following objects are masked from ‘package:stats’:
518s 
518s     IQR, mad, sd, var, xtabs
518s 
518s The following objects are masked from ‘package:base’:
518s 
518s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
518s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
518s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
518s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
518s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
518s     table, tapply, union, unique, unsplit, which.max, which.min
518s 
518s Loading required package: S4Vectors
518s 
518s Attaching package: ‘S4Vectors’
518s 
518s The following object is masked from ‘package:utils’:
518s 
518s     findMatches
518s 
518s The following objects are masked from ‘package:base’:
518s 
518s     expand.grid, I, unname
518s 
518s Loading required package: IRanges
519s Loading required package: GenomeInfoDb
520s Loading required package: Biobase
520s Welcome to Bioconductor
520s 
520s     Vignettes contain introductory material; view with
520s     'browseVignettes()'. To cite Bioconductor, see
520s     'citation("Biobase")', and for packages 'citation("pkgname")'.
520s 
520s 
520s Attaching package: ‘Biobase’
520s 
520s The following object is masked from ‘package:MatrixGenerics’:
520s 
520s     rowMedians
520s 
520s The following objects are masked from ‘package:matrixStats’:
520s 
520s     anyMissing, rowMedians
520s 
525s > 
525s > 
525s Other tests are currently unsupported!
525s They will be progressively added.
525s autopkgtest [17:51:21]: test pkg-r-autopkgtest: -----------------------]
526s autopkgtest [17:51:22]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
526s pkg-r-autopkgtest    PASS
526s autopkgtest [17:51:22]: @@@@@@@@@@@@@@@@@@@@ summary
526s pkg-r-autopkgtest    PASS
544s nova [W] Using flock in prodstack6-s390x
544s flock: timeout while waiting to get lock
544s Creating nova instance adt-plucky-s390x-r-bioc-dropletutils-20250315-174236-juju-7f2275-prod-proposed-migration-environment-2-e36477f2-1683-4e98-8b31-bd24fbaccf2b from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
544s nova [W] Timed out waiting for 022ab0e3-c63d-4fbc-afde-02c76c7cb3a1 to get deleted.