1s autopkgtest [17:42:36]: starting date and time: 2025-03-15 17:42:36+0000
  2s autopkgtest [17:42:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  2s autopkgtest [17:42:37]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0_r3hx9e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-dnacopy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-8.secgroup --name adt-plucky-s390x-r-bioc-dnacopy-20250315-174233-juju-7f2275-prod-proposed-migration-environment-15-f6ec4f97-6536-48fb-a99f-16c7d6469d39 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
177s autopkgtest [17:45:32]: testbed dpkg architecture: s390x
177s autopkgtest [17:45:32]: testbed apt version: 2.9.33
177s autopkgtest [17:45:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup
178s autopkgtest [17:45:33]: testbed release detected to be: None
178s autopkgtest [17:45:33]: updating testbed package index (apt update)
179s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
179s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
179s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
179s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
179s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
179s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
179s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
181s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
181s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
181s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
181s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
181s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
181s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
181s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
181s Fetched 1073 kB in 2s (678 kB/s)
181s Reading package lists...
182s + lsb_release --codename --short
182s + RELEASE=plucky
182s + cat
182s + [ plucky != trusty ]
182s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
182s Reading package lists...
182s Building dependency tree...
182s Reading state information...
182s Calculating upgrade...
182s Calculating upgrade...
182s The following packages were automatically installed and are no longer required:
182s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
182s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
182s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
182s   linux-tools-6.11.0-8-generic
182s Use 'sudo apt autoremove' to remove them.
182s The following packages will be upgraded:
182s   pinentry-curses python3-jinja2 strace
182s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
182s Need to get 652 kB of archives.
182s After this operation, 27.6 kB of additional disk space will be used.
182s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
183s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
183s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
183s Fetched 652 kB in 1s (699 kB/s)
183s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
183s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
183s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
184s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
184s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
184s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
184s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
184s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
184s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
184s Setting up strace (6.13+ds-1ubuntu1) ...
184s Processing triggers for man-db (2.13.0-1) ...
184s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
184s + /usr/lib/apt/apt-helper analyze-pattern ?true
184s + uname -r
184s + sed s/\./\\./g
184s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
184s + apt list ?obsolete
184s + tail -n+2
184s + cut -d/ -f1
184s + grep -v ^linux-.*6\.14\.0-10-generic.*
185s + obsolete_pkgs=linux-headers-6.11.0-8-generic
185s linux-headers-6.11.0-8
185s linux-modules-6.11.0-8-generic
185s linux-tools-6.11.0-8-generic
185s linux-tools-6.11.0-8
185s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
185s Reading package lists...
185s Building dependency tree...
185s Reading state information...
185s Solving dependencies...
185s The following packages will be REMOVED:
185s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
185s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
185s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
185s   linux-tools-6.11.0-8-generic*
185s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
185s After this operation, 167 MB disk space will be freed.
185s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
185s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
185s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
185s Removing libpython3.12t64:s390x (3.12.9-1) ...
185s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
185s Removing libnsl2:s390x (1.3.0-3build3) ...
185s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
185s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
185s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
186s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
186s Processing triggers for libc-bin (2.41-1ubuntu1) ...
186s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
186s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
186s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
187s + grep -q trusty /etc/lsb-release
187s + [ ! -d /usr/share/doc/unattended-upgrades ]
187s + [ ! -d /usr/share/doc/lxd ]
187s + [ ! -d /usr/share/doc/lxd-client ]
187s + [ ! -d /usr/share/doc/snapd ]
187s + type iptables
187s + cat
187s + chmod 755 /etc/rc.local
187s + . /etc/rc.local
187s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
187s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
187s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
187s + uname -m
187s + [ s390x = ppc64le ]
187s + [ -d /run/systemd/system ]
187s + systemd-detect-virt --quiet --vm
187s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
187s + cat
187s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
187s + echo COMPRESS=lz4
187s autopkgtest [17:45:42]: upgrading testbed (apt dist-upgrade and autopurge)
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
187s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
187s Starting 2 pkgProblemResolver with broken count: 0
187s Done
188s Entering ResolveByKeep
188s 
188s Calculating upgrade...
188s The following packages will be upgraded:
188s   libc-bin libc-dev-bin libc6 libc6-dev locales
188s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
188s Need to get 9512 kB of archives.
188s After this operation, 8192 B of additional disk space will be used.
188s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
190s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
190s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
193s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
193s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
198s Preconfiguring packages ...
198s Fetched 9512 kB in 10s (988 kB/s)
198s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
198s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
198s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
198s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
198s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Setting up libc6:s390x (2.41-1ubuntu2) ...
198s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
198s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
198s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Setting up libc-bin (2.41-1ubuntu2) ...
198s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
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(Reading database ... 56326 files and directories currently installed.)
198s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
198s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Setting up locales (2.41-1ubuntu2) ...
199s Generating locales (this might take a while)...
200s   en_US.UTF-8... done
200s Generation complete.
200s Setting up libc-dev-bin (2.41-1ubuntu2) ...
200s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
200s Processing triggers for man-db (2.13.0-1) ...
200s Processing triggers for systemd (257.3-1ubuntu3) ...
201s Reading package lists...
202s Building dependency tree...
202s Reading state information...
202s Starting pkgProblemResolver with broken count: 0
202s Starting 2 pkgProblemResolver with broken count: 0
202s Done
202s Solving dependencies...
202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
202s autopkgtest [17:45:57]: rebooting testbed after setup commands that affected boot
223s autopkgtest [17:46:18]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
226s autopkgtest [17:46:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dnacopy
228s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dnacopy 1.80.0-2 (dsc) [2099 B]
228s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dnacopy 1.80.0-2 (tar) [417 kB]
228s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-dnacopy 1.80.0-2 (diff) [3212 B]
228s gpgv: Signature made Sat Jan 11 16:38:47 2025 UTC
228s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
228s gpgv:                issuer "crusoe@debian.org"
228s gpgv: Can't check signature: No public key
228s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dnacopy_1.80.0-2.dsc: no acceptable signature found
228s autopkgtest [17:46:23]: testing package r-bioc-dnacopy version 1.80.0-2
229s autopkgtest [17:46:24]: build not needed
232s autopkgtest [17:46:27]: test pkg-r-autopkgtest: preparing testbed
232s Reading package lists...
233s Building dependency tree...
233s Reading state information...
233s Starting pkgProblemResolver with broken count: 0
233s Starting 2 pkgProblemResolver with broken count: 0
233s Done
233s The following NEW packages will be installed:
233s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
233s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
233s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
233s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
233s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
233s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
233s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
233s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
233s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
233s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
233s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
233s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
233s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
233s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
233s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
233s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
233s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy unzip x11-common
233s   xdg-utils zip zlib1g-dev
233s 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded.
233s Need to get 124 MB of archives.
233s After this operation, 361 MB of additional disk space will be used.
233s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
234s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
234s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
242s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
242s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
242s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
242s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
242s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
242s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
242s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
245s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
246s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
247s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
262s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
262s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
262s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
262s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
264s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
274s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
274s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
274s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
274s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
274s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
274s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
275s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
275s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
276s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
276s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
276s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
276s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
277s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
278s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
287s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
287s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
287s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
287s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
287s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
287s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
287s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
288s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
288s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
288s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
288s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
288s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
288s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
288s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
288s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
288s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
288s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
289s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
289s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
289s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
300s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
301s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
301s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
301s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
301s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
301s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
303s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
307s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
308s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
308s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
308s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
308s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
308s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
308s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
308s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
308s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
308s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
308s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
308s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
309s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
309s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
309s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
310s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
310s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
310s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
310s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
310s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
310s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
310s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
311s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
311s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
311s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
311s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
311s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
311s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
311s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
312s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
340s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
341s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
341s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
341s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
341s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
341s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
341s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
341s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-dnacopy s390x 1.80.0-2 [501 kB]
342s Preconfiguring packages ...
342s Fetched 124 MB in 1min 48s (1141 kB/s)
342s Selecting previously unselected package libisl23:s390x.
342s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
342s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
342s Unpacking libisl23:s390x (0.27-1) ...
342s Selecting previously unselected package libmpc3:s390x.
342s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
342s Unpacking libmpc3:s390x (1.3.1-1build2) ...
342s Selecting previously unselected package cpp-14-s390x-linux-gnu.
342s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
342s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
342s Selecting previously unselected package cpp-14.
342s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
342s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
342s Selecting previously unselected package cpp-s390x-linux-gnu.
342s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
342s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
342s Selecting previously unselected package cpp.
342s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
342s Unpacking cpp (4:14.2.0-1ubuntu1) ...
342s Selecting previously unselected package libcc1-0:s390x.
342s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
342s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
342s Selecting previously unselected package libgomp1:s390x.
342s Preparing to unpack .../07-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
342s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
342s Selecting previously unselected package libitm1:s390x.
342s Preparing to unpack .../08-libitm1_15-20250222-0ubuntu1_s390x.deb ...
342s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
342s Selecting previously unselected package libasan8:s390x.
342s Preparing to unpack .../09-libasan8_15-20250222-0ubuntu1_s390x.deb ...
342s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
342s Selecting previously unselected package libubsan1:s390x.
342s Preparing to unpack .../10-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
342s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
342s Selecting previously unselected package libgcc-14-dev:s390x.
342s Preparing to unpack .../11-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
342s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
342s Selecting previously unselected package gcc-14-s390x-linux-gnu.
342s Preparing to unpack .../12-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
342s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
342s Selecting previously unselected package gcc-14.
342s Preparing to unpack .../13-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
342s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
343s Selecting previously unselected package gcc-s390x-linux-gnu.
343s Preparing to unpack .../14-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
343s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
343s Selecting previously unselected package gcc.
343s Preparing to unpack .../15-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
343s Unpacking gcc (4:14.2.0-1ubuntu1) ...
343s Selecting previously unselected package libstdc++-14-dev:s390x.
343s Preparing to unpack .../16-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
343s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
343s Selecting previously unselected package g++-14-s390x-linux-gnu.
343s Preparing to unpack .../17-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
343s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
343s Selecting previously unselected package g++-14.
343s Preparing to unpack .../18-g++-14_14.2.0-17ubuntu3_s390x.deb ...
343s Unpacking g++-14 (14.2.0-17ubuntu3) ...
343s Selecting previously unselected package g++-s390x-linux-gnu.
343s Preparing to unpack .../19-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
343s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
343s Selecting previously unselected package g++.
343s Preparing to unpack .../20-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
343s Unpacking g++ (4:14.2.0-1ubuntu1) ...
343s Selecting previously unselected package build-essential.
343s Preparing to unpack .../21-build-essential_12.10ubuntu1_s390x.deb ...
343s Unpacking build-essential (12.10ubuntu1) ...
343s Selecting previously unselected package dctrl-tools.
343s Preparing to unpack .../22-dctrl-tools_2.24-3build3_s390x.deb ...
343s Unpacking dctrl-tools (2.24-3build3) ...
343s Selecting previously unselected package libfreetype6:s390x.
343s Preparing to unpack .../23-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
343s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
343s Selecting previously unselected package fonts-dejavu-mono.
343s Preparing to unpack .../24-fonts-dejavu-mono_2.37-8_all.deb ...
343s Unpacking fonts-dejavu-mono (2.37-8) ...
343s Selecting previously unselected package fonts-dejavu-core.
343s Preparing to unpack .../25-fonts-dejavu-core_2.37-8_all.deb ...
343s Unpacking fonts-dejavu-core (2.37-8) ...
343s Selecting previously unselected package fontconfig-config.
343s Preparing to unpack .../26-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
343s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
343s Selecting previously unselected package libfontconfig1:s390x.
343s Preparing to unpack .../27-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
343s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
343s Selecting previously unselected package fontconfig.
343s Preparing to unpack .../28-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
343s Unpacking fontconfig (2.15.0-2ubuntu1) ...
343s Selecting previously unselected package libgfortran5:s390x.
343s Preparing to unpack .../29-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
343s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
343s Selecting previously unselected package libgfortran-14-dev:s390x.
343s Preparing to unpack .../30-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
343s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
343s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
343s Preparing to unpack .../31-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
343s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
343s Selecting previously unselected package gfortran-14.
343s Preparing to unpack .../32-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
343s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
343s Selecting previously unselected package gfortran-s390x-linux-gnu.
343s Preparing to unpack .../33-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
343s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
343s Selecting previously unselected package gfortran.
343s Preparing to unpack .../34-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
343s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
343s Selecting previously unselected package icu-devtools.
343s Preparing to unpack .../35-icu-devtools_76.1-1ubuntu2_s390x.deb ...
343s Unpacking icu-devtools (76.1-1ubuntu2) ...
343s Selecting previously unselected package libblas3:s390x.
343s Preparing to unpack .../36-libblas3_3.12.1-2_s390x.deb ...
343s Unpacking libblas3:s390x (3.12.1-2) ...
343s Selecting previously unselected package libblas-dev:s390x.
343s Preparing to unpack .../37-libblas-dev_3.12.1-2_s390x.deb ...
343s Unpacking libblas-dev:s390x (3.12.1-2) ...
343s Selecting previously unselected package libbz2-dev:s390x.
343s Preparing to unpack .../38-libbz2-dev_1.0.8-6_s390x.deb ...
343s Unpacking libbz2-dev:s390x (1.0.8-6) ...
343s Selecting previously unselected package libpixman-1-0:s390x.
343s Preparing to unpack .../39-libpixman-1-0_0.44.0-3_s390x.deb ...
343s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
343s Selecting previously unselected package libxcb-render0:s390x.
343s Preparing to unpack .../40-libxcb-render0_1.17.0-2_s390x.deb ...
343s Unpacking libxcb-render0:s390x (1.17.0-2) ...
343s Selecting previously unselected package libxcb-shm0:s390x.
343s Preparing to unpack .../41-libxcb-shm0_1.17.0-2_s390x.deb ...
343s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
343s Selecting previously unselected package libxrender1:s390x.
343s Preparing to unpack .../42-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
343s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
343s Selecting previously unselected package libcairo2:s390x.
343s Preparing to unpack .../43-libcairo2_1.18.2-2_s390x.deb ...
343s Unpacking libcairo2:s390x (1.18.2-2) ...
343s Selecting previously unselected package libdatrie1:s390x.
343s Preparing to unpack .../44-libdatrie1_0.2.13-3build1_s390x.deb ...
343s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
343s Selecting previously unselected package libdeflate0:s390x.
343s Preparing to unpack .../45-libdeflate0_1.23-1_s390x.deb ...
343s Unpacking libdeflate0:s390x (1.23-1) ...
343s Selecting previously unselected package libdeflate-dev:s390x.
343s Preparing to unpack .../46-libdeflate-dev_1.23-1_s390x.deb ...
343s Unpacking libdeflate-dev:s390x (1.23-1) ...
343s Selecting previously unselected package libgraphite2-3:s390x.
343s Preparing to unpack .../47-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
343s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
344s Selecting previously unselected package libharfbuzz0b:s390x.
344s Preparing to unpack .../48-libharfbuzz0b_10.2.0-1_s390x.deb ...
344s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
344s Selecting previously unselected package x11-common.
344s Preparing to unpack .../49-x11-common_1%3a7.7+23ubuntu3_all.deb ...
344s Unpacking x11-common (1:7.7+23ubuntu3) ...
344s Selecting previously unselected package libice6:s390x.
344s Preparing to unpack .../50-libice6_2%3a1.1.1-1_s390x.deb ...
344s Unpacking libice6:s390x (2:1.1.1-1) ...
344s Selecting previously unselected package libicu-dev:s390x.
344s Preparing to unpack .../51-libicu-dev_76.1-1ubuntu2_s390x.deb ...
344s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
344s Selecting previously unselected package libjpeg-turbo8:s390x.
344s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
344s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
344s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
344s Preparing to unpack .../53-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
344s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
344s Selecting previously unselected package libjpeg8:s390x.
344s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_s390x.deb ...
344s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
344s Selecting previously unselected package libjpeg8-dev:s390x.
344s Preparing to unpack .../55-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
344s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
344s Selecting previously unselected package libjpeg-dev:s390x.
344s Preparing to unpack .../56-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
344s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
344s Selecting previously unselected package liblapack3:s390x.
344s Preparing to unpack .../57-liblapack3_3.12.1-2_s390x.deb ...
344s Unpacking liblapack3:s390x (3.12.1-2) ...
344s Selecting previously unselected package liblapack-dev:s390x.
344s Preparing to unpack .../58-liblapack-dev_3.12.1-2_s390x.deb ...
344s Unpacking liblapack-dev:s390x (3.12.1-2) ...
344s Selecting previously unselected package libncurses-dev:s390x.
344s Preparing to unpack .../59-libncurses-dev_6.5+20250216-2_s390x.deb ...
344s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
344s Selecting previously unselected package libthai-data.
344s Preparing to unpack .../60-libthai-data_0.1.29-2build1_all.deb ...
344s Unpacking libthai-data (0.1.29-2build1) ...
344s Selecting previously unselected package libthai0:s390x.
344s Preparing to unpack .../61-libthai0_0.1.29-2build1_s390x.deb ...
344s Unpacking libthai0:s390x (0.1.29-2build1) ...
344s Selecting previously unselected package libpango-1.0-0:s390x.
344s Preparing to unpack .../62-libpango-1.0-0_1.56.2-1_s390x.deb ...
344s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
344s Selecting previously unselected package libpangoft2-1.0-0:s390x.
344s Preparing to unpack .../63-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
344s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
344s Selecting previously unselected package libpangocairo-1.0-0:s390x.
344s Preparing to unpack .../64-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
344s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
344s Selecting previously unselected package libpaper2:s390x.
344s Preparing to unpack .../65-libpaper2_2.2.5-0.3_s390x.deb ...
344s Unpacking libpaper2:s390x (2.2.5-0.3) ...
344s Selecting previously unselected package libpaper-utils.
344s Preparing to unpack .../66-libpaper-utils_2.2.5-0.3_s390x.deb ...
344s Unpacking libpaper-utils (2.2.5-0.3) ...
344s Selecting previously unselected package libpcre2-16-0:s390x.
344s Preparing to unpack .../67-libpcre2-16-0_10.45-1_s390x.deb ...
344s Unpacking libpcre2-16-0:s390x (10.45-1) ...
344s Selecting previously unselected package libpcre2-32-0:s390x.
344s Preparing to unpack .../68-libpcre2-32-0_10.45-1_s390x.deb ...
344s Unpacking libpcre2-32-0:s390x (10.45-1) ...
344s Selecting previously unselected package libpcre2-posix3:s390x.
344s Preparing to unpack .../69-libpcre2-posix3_10.45-1_s390x.deb ...
344s Unpacking libpcre2-posix3:s390x (10.45-1) ...
344s Selecting previously unselected package libpcre2-dev:s390x.
344s Preparing to unpack .../70-libpcre2-dev_10.45-1_s390x.deb ...
344s Unpacking libpcre2-dev:s390x (10.45-1) ...
344s Selecting previously unselected package libpkgconf3:s390x.
344s Preparing to unpack .../71-libpkgconf3_1.8.1-4_s390x.deb ...
344s Unpacking libpkgconf3:s390x (1.8.1-4) ...
344s Selecting previously unselected package zlib1g-dev:s390x.
344s Preparing to unpack .../72-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
344s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
344s Selecting previously unselected package libpng-dev:s390x.
344s Preparing to unpack .../73-libpng-dev_1.6.47-1_s390x.deb ...
344s Unpacking libpng-dev:s390x (1.6.47-1) ...
344s Selecting previously unselected package libreadline-dev:s390x.
344s Preparing to unpack .../74-libreadline-dev_8.2-6_s390x.deb ...
344s Unpacking libreadline-dev:s390x (8.2-6) ...
344s Selecting previously unselected package libsharpyuv0:s390x.
344s Preparing to unpack .../75-libsharpyuv0_1.5.0-0.1_s390x.deb ...
344s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
344s Selecting previously unselected package libsm6:s390x.
344s Preparing to unpack .../76-libsm6_2%3a1.2.4-1_s390x.deb ...
344s Unpacking libsm6:s390x (2:1.2.4-1) ...
344s Selecting previously unselected package libtcl8.6:s390x.
344s Preparing to unpack .../77-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
344s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
344s Selecting previously unselected package libjbig0:s390x.
344s Preparing to unpack .../78-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
344s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
344s Selecting previously unselected package libwebp7:s390x.
344s Preparing to unpack .../79-libwebp7_1.5.0-0.1_s390x.deb ...
344s Unpacking libwebp7:s390x (1.5.0-0.1) ...
344s Selecting previously unselected package libtiff6:s390x.
344s Preparing to unpack .../80-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
344s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
344s Selecting previously unselected package libxft2:s390x.
344s Preparing to unpack .../81-libxft2_2.3.6-1build1_s390x.deb ...
344s Unpacking libxft2:s390x (2.3.6-1build1) ...
344s Selecting previously unselected package libxss1:s390x.
344s Preparing to unpack .../82-libxss1_1%3a1.2.3-1build3_s390x.deb ...
344s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
344s Selecting previously unselected package libtk8.6:s390x.
344s Preparing to unpack .../83-libtk8.6_8.6.16-1_s390x.deb ...
344s Unpacking libtk8.6:s390x (8.6.16-1) ...
344s Selecting previously unselected package libxt6t64:s390x.
344s Preparing to unpack .../84-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
344s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
344s Selecting previously unselected package zip.
344s Preparing to unpack .../85-zip_3.0-14ubuntu2_s390x.deb ...
344s Unpacking zip (3.0-14ubuntu2) ...
344s Selecting previously unselected package unzip.
344s Preparing to unpack .../86-unzip_6.0-28ubuntu6_s390x.deb ...
344s Unpacking unzip (6.0-28ubuntu6) ...
344s Selecting previously unselected package xdg-utils.
344s Preparing to unpack .../87-xdg-utils_1.2.1-2ubuntu1_all.deb ...
344s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
344s Selecting previously unselected package r-base-core.
344s Preparing to unpack .../88-r-base-core_4.4.3-1_s390x.deb ...
344s Unpacking r-base-core (4.4.3-1) ...
345s Selecting previously unselected package liblzma-dev:s390x.
345s Preparing to unpack .../89-liblzma-dev_5.6.4-1_s390x.deb ...
345s Unpacking liblzma-dev:s390x (5.6.4-1) ...
345s Selecting previously unselected package pkgconf-bin.
345s Preparing to unpack .../90-pkgconf-bin_1.8.1-4_s390x.deb ...
345s Unpacking pkgconf-bin (1.8.1-4) ...
345s Selecting previously unselected package pkgconf:s390x.
345s Preparing to unpack .../91-pkgconf_1.8.1-4_s390x.deb ...
345s Unpacking pkgconf:s390x (1.8.1-4) ...
345s Selecting previously unselected package libtirpc-dev:s390x.
345s Preparing to unpack .../92-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
345s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
345s Selecting previously unselected package r-base-dev.
345s Preparing to unpack .../93-r-base-dev_4.4.3-1_all.deb ...
345s Unpacking r-base-dev (4.4.3-1) ...
345s Selecting previously unselected package pkg-r-autopkgtest.
345s Preparing to unpack .../94-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
345s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
345s Selecting previously unselected package r-bioc-biocgenerics.
345s Preparing to unpack .../95-r-bioc-biocgenerics_0.52.0-2_all.deb ...
345s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
345s Selecting previously unselected package r-bioc-dnacopy.
345s Preparing to unpack .../96-r-bioc-dnacopy_1.80.0-2_s390x.deb ...
345s Unpacking r-bioc-dnacopy (1.80.0-2) ...
345s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
345s Setting up libpixman-1-0:s390x (0.44.0-3) ...
345s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
345s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
345s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
345s Setting up libdatrie1:s390x (0.2.13-3build1) ...
345s Setting up libxcb-render0:s390x (1.17.0-2) ...
345s Setting up unzip (6.0-28ubuntu6) ...
345s Setting up x11-common (1:7.7+23ubuntu3) ...
345s Setting up libdeflate0:s390x (1.23-1) ...
345s Setting up libxcb-shm0:s390x (1.17.0-2) ...
345s Setting up libreadline-dev:s390x (8.2-6) ...
345s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
345s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
345s Setting up libpcre2-16-0:s390x (10.45-1) ...
345s Setting up zip (3.0-14ubuntu2) ...
345s Setting up libpcre2-32-0:s390x (10.45-1) ...
345s Setting up libblas3:s390x (3.12.1-2) ...
345s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
345s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
345s Setting up libpkgconf3:s390x (1.8.1-4) ...
345s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
345s Setting up fonts-dejavu-mono (2.37-8) ...
345s Setting up libmpc3:s390x (1.3.1-1build2) ...
345s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
345s Setting up icu-devtools (76.1-1ubuntu2) ...
345s Setting up fonts-dejavu-core (2.37-8) ...
345s Setting up pkgconf-bin (1.8.1-4) ...
345s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
345s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
345s Setting up libwebp7:s390x (1.5.0-0.1) ...
345s Setting up liblzma-dev:s390x (5.6.4-1) ...
345s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
345s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
345s Setting up libpcre2-posix3:s390x (10.45-1) ...
345s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
345s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
345s Setting up libthai-data (0.1.29-2build1) ...
345s Setting up libxss1:s390x (1:1.2.3-1build3) ...
345s Setting up libpaper2:s390x (2.2.5-0.3) ...
345s Setting up libisl23:s390x (0.27-1) ...
345s Setting up libdeflate-dev:s390x (1.23-1) ...
345s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
345s Setting up xdg-utils (1.2.1-2ubuntu1) ...
345s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
345s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
345s Setting up libblas-dev:s390x (3.12.1-2) ...
345s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
345s Setting up dctrl-tools (2.24-3build3) ...
345s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
345s Setting up libbz2-dev:s390x (1.0.8-6) ...
345s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
345s Setting up libice6:s390x (2:1.1.1-1) ...
345s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
345s Setting up liblapack3:s390x (3.12.1-2) ...
345s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
345s Setting up libpcre2-dev:s390x (10.45-1) ...
345s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
345s Setting up libpng-dev:s390x (1.6.47-1) ...
345s Setting up libpaper-utils (2.2.5-0.3) ...
345s Setting up pkgconf:s390x (1.8.1-4) ...
345s Setting up libthai0:s390x (0.1.29-2build1) ...
345s Setting up liblapack-dev:s390x (3.12.1-2) ...
345s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
345s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
345s Setting up cpp-14 (14.2.0-17ubuntu3) ...
345s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
345s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
345s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
345s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
345s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
345s Setting up libsm6:s390x (2:1.2.4-1) ...
345s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
345s Setting up fontconfig (2.15.0-2ubuntu1) ...
348s Regenerating fonts cache... done.
348s Setting up libxft2:s390x (2.3.6-1build1) ...
348s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
348s Setting up libtk8.6:s390x (8.6.16-1) ...
348s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
348s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
348s Setting up libcairo2:s390x (1.18.2-2) ...
348s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
348s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
348s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
348s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
348s Setting up cpp (4:14.2.0-1ubuntu1) ...
348s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
348s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
348s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
348s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
348s Setting up gcc-14 (14.2.0-17ubuntu3) ...
348s Setting up r-base-core (4.4.3-1) ...
348s Creating config file /etc/R/Renviron with new version
348s Setting up g++-14 (14.2.0-17ubuntu3) ...
348s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
348s Setting up r-bioc-biocgenerics (0.52.0-2) ...
348s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
348s Setting up gcc (4:14.2.0-1ubuntu1) ...
348s Setting up g++ (4:14.2.0-1ubuntu1) ...
348s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
348s Setting up r-bioc-dnacopy (1.80.0-2) ...
348s Setting up build-essential (12.10ubuntu1) ...
348s Setting up gfortran (4:14.2.0-1ubuntu1) ...
348s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
348s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
348s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
348s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
348s Setting up r-base-dev (4.4.3-1) ...
348s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
348s Processing triggers for libc-bin (2.41-1ubuntu2) ...
348s Processing triggers for man-db (2.13.0-1) ...
349s Processing triggers for install-info (7.1.1-1) ...
350s autopkgtest [17:48:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
350s autopkgtest [17:48:25]: test pkg-r-autopkgtest: [-----------------------
350s Test: Try to load the R library DNAcopy
350s 
350s R version 4.4.3 (2025-02-28) -- "Trophy Case"
350s Copyright (C) 2025 The R Foundation for Statistical Computing
350s Platform: s390x-ibm-linux-gnu
350s 
350s R is free software and comes with ABSOLUTELY NO WARRANTY.
350s You are welcome to redistribute it under certain conditions.
350s Type 'license()' or 'licence()' for distribution details.
350s 
350s R is a collaborative project with many contributors.
350s Type 'contributors()' for more information and
350s 'citation()' on how to cite R or R packages in publications.
350s 
350s Type 'demo()' for some demos, 'help()' for on-line help, or
350s 'help.start()' for an HTML browser interface to help.
350s Type 'q()' to quit R.
350s 
350s > library('DNAcopy')
350s > 
350s > 
350s Other tests are currently unsupported!
350s They will be progressively added.
351s autopkgtest [17:48:26]: test pkg-r-autopkgtest: -----------------------]
351s autopkgtest [17:48:26]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
351s pkg-r-autopkgtest    PASS
351s autopkgtest [17:48:26]: @@@@@@@@@@@@@@@@@@@@ summary
351s pkg-r-autopkgtest    PASS
369s nova [W] Using flock in prodstack6-s390x
369s Creating nova instance adt-plucky-s390x-r-bioc-dnacopy-20250315-174233-juju-7f2275-prod-proposed-migration-environment-15-f6ec4f97-6536-48fb-a99f-16c7d6469d39 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
369s nova [W] Timed out waiting for ad655946-2a22-46d3-a5fa-545aa1cc4828 to get deleted.