0s autopkgtest [11:33:37]: starting date and time: 2025-03-15 11:33:37+0000
  0s autopkgtest [11:33:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [11:33:37]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kp1rzubr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-cner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-23.secgroup --name adt-plucky-s390x-r-bioc-cner-20250315-113337-juju-7f2275-prod-proposed-migration-environment-20-6217dc2c-6960-4cab-8a97-27e229578983 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
155s autopkgtest [11:36:12]: testbed dpkg architecture: s390x
155s autopkgtest [11:36:12]: testbed apt version: 2.9.33
156s autopkgtest [11:36:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup
156s autopkgtest [11:36:13]: testbed release detected to be: None
156s autopkgtest [11:36:13]: updating testbed package index (apt update)
157s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
157s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
157s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
157s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
157s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
157s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB]
158s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB]
158s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [80.7 kB]
158s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1852 B]
158s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
158s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [335 kB]
158s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [14.4 kB]
158s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
158s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [328 B]
158s Fetched 1034 kB in 2s (675 kB/s)
159s Reading package lists...
160s Reading package lists...
160s Building dependency tree...
160s Reading state information...
160s Calculating upgrade...
160s Calculating upgrade...
160s The following packages were automatically installed and are no longer required:
160s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
160s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
160s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
160s   linux-tools-6.11.0-8-generic
160s Use 'sudo apt autoremove' to remove them.
160s The following packages will be upgraded:
160s   python3-jinja2 strace
160s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
160s Need to get 609 kB of archives.
160s After this operation, 27.6 kB of additional disk space will be used.
160s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
161s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
161s Fetched 609 kB in 1s (746 kB/s)
161s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
161s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
161s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
161s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
161s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
161s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
161s Setting up strace (6.13+ds-1ubuntu1) ...
161s Processing triggers for man-db (2.13.0-1) ...
162s Reading package lists...
162s Building dependency tree...
162s Reading state information...
162s Solving dependencies...
162s The following packages will be REMOVED:
162s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
162s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
162s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
162s   linux-tools-6.11.0-8-generic*
162s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
162s After this operation, 167 MB disk space will be freed.
162s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
162s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
162s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
162s Removing libpython3.12t64:s390x (3.12.9-1) ...
162s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
162s Removing libnsl2:s390x (1.3.0-3build3) ...
162s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
163s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
163s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
163s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
163s Processing triggers for libc-bin (2.41-1ubuntu1) ...
163s (Reading database ... 
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(Reading database ... 56328 files and directories currently installed.)
163s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
163s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
164s autopkgtest [11:36:21]: upgrading testbed (apt dist-upgrade and autopurge)
164s Reading package lists...
164s Building dependency tree...
164s Reading state information...
164s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
164s Starting 2 pkgProblemResolver with broken count: 0
164s Done
164s Entering ResolveByKeep
164s 
164s Calculating upgrade...
165s The following packages will be upgraded:
165s   libc-bin libc-dev-bin libc6 libc6-dev locales
165s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
165s Need to get 9512 kB of archives.
165s After this operation, 8192 B of additional disk space will be used.
165s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
166s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
166s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
168s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
169s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
172s Preconfiguring packages ...
172s Fetched 9512 kB in 7s (1273 kB/s)
172s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
172s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
172s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
172s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
172s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
172s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
173s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
173s Setting up libc6:s390x (2.41-1ubuntu2) ...
173s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
173s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
173s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
173s Setting up libc-bin (2.41-1ubuntu2) ...
173s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
173s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
173s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
173s Setting up locales (2.41-1ubuntu2) ...
173s Generating locales (this might take a while)...
174s   en_US.UTF-8... done
174s Generation complete.
174s Setting up libc-dev-bin (2.41-1ubuntu2) ...
174s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
174s Processing triggers for man-db (2.13.0-1) ...
175s Processing triggers for systemd (257.3-1ubuntu3) ...
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
176s Starting pkgProblemResolver with broken count: 0
176s Starting 2 pkgProblemResolver with broken count: 0
176s Done
176s Solving dependencies...
176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
176s autopkgtest [11:36:33]: rebooting testbed after setup commands that affected boot
194s autopkgtest [11:36:51]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
197s autopkgtest [11:36:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cner
207s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (dsc) [2436 B]
207s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (tar) [7750 kB]
207s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-cner 1.42.0+dfsg-2 (diff) [5280 B]
207s gpgv: Signature made Mon Jan 13 20:01:02 2025 UTC
207s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
207s gpgv:                issuer "crusoe@debian.org"
207s gpgv: Can't check signature: No public key
207s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cner_1.42.0+dfsg-2.dsc: no acceptable signature found
208s autopkgtest [11:37:05]: testing package r-bioc-cner version 1.42.0+dfsg-2
208s autopkgtest [11:37:05]: build not needed
215s autopkgtest [11:37:12]: test pkg-r-autopkgtest: preparing testbed
216s Reading package lists...
216s Building dependency tree...
216s Reading state information...
216s Starting pkgProblemResolver with broken count: 0
216s Starting 2 pkgProblemResolver with broken count: 0
216s Done
216s The following NEW packages will be installed:
216s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
216s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
216s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
216s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
216s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
216s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
216s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
216s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
216s   libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev
216s   libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
216s   libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
216s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
216s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
216s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
216s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
216s   libjs-popper.js libjs-prettify libjs-sifter.js
216s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
216s   liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libmpfi0
216s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
216s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
216s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
216s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
216s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
216s   libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2
216s   libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler
216s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
216s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
216s   r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase
216s   r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
216s   r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings
216s   r-bioc-biovizbase r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray
216s   r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata
216s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
216s   r-bioc-go.db r-bioc-gviz r-bioc-iranges r-bioc-keggrest
216s   r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-pwalign r-bioc-rhtslib
216s   r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
216s   r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils
216s   r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind
216s   r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh
216s   r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
216s   r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr
216s   r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster
216s   r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11
216s   r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr
216s   r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest
216s   r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
216s   r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr
216s   r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options
216s   r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable
216s   r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools
216s   r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-interp
216s   r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr
216s   r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice
216s   r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler
216s   r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
216s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet
216s   r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
216s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png
216s   r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits
216s   r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr
216s   r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs
216s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr
216s   r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown
216s   r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sass
216s   r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi
216s   r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble
216s   r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8
216s   r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo
216s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml
216s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
216s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
216s 0 upgraded, 338 newly installed, 0 to remove and 0 not upgraded.
216s Need to get 541 MB of archives.
216s After this operation, 1647 MB of additional disk space will be used.
216s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
217s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
217s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
228s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
228s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
228s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
228s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
228s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
228s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
228s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
231s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
232s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
234s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
253s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
254s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
254s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
254s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
257s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
268s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
268s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
268s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
268s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
268s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
268s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
269s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
269s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
270s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
270s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
270s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
270s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
271s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
271s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
276s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
278s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
278s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
279s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
288s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
288s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
288s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
288s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
288s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B]
288s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
288s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
288s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
288s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
288s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
289s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB]
299s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
299s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
299s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
299s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
299s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
299s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
299s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
300s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
300s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
300s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
300s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
300s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
301s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
301s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
301s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
315s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
315s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
315s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
315s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
315s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
315s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
316s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
316s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
316s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
316s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
316s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
317s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
317s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
317s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
317s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
317s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
317s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
318s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
318s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
318s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
318s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
318s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
321s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
328s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
328s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
328s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
328s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
329s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
329s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB]
329s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB]
329s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB]
329s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
329s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
329s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
329s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
329s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
330s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
330s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
330s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
332s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
332s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
332s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
332s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
332s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
332s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
332s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
332s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
334s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
334s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
334s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
334s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
334s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
335s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
335s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
335s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
336s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
336s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
336s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
336s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
336s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
336s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
336s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
336s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
337s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
337s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
367s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
367s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
367s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
367s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
367s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
367s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
367s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
414s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
414s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
414s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
414s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
414s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
414s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
414s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
414s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
416s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
418s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
420s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB]
421s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB]
421s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB]
421s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
423s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
424s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
424s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
424s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
426s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB]
426s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
426s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
426s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
426s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
426s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB]
426s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
426s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB]
427s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
427s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
428s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
428s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
428s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
428s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
428s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
428s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
429s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB]
429s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
429s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
429s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
429s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
441s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
445s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
445s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
460s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB]
460s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
467s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB]
469s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
469s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB]
472s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB]
474s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lazyeval s390x 0.2.2-1build1 [143 kB]
475s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB]
475s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB]
475s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
475s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
475s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
476s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
477s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB]
477s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
478s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyselect s390x 1.2.1+dfsg-1 [222 kB]
478s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dplyr s390x 1.1.4-4 [1537 kB]
480s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-purrr s390x 1.0.4-1 [553 kB]
480s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringi s390x 1.8.4-1build1 [917 kB]
481s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringr all 1.5.1-1 [290 kB]
482s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB]
483s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB]
484s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB]
484s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB]
485s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
485s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB]
486s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
486s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
486s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
486s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
486s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB]
486s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
486s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB]
488s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
488s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
488s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
489s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
489s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
489s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
489s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
489s Get:217 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
496s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB]
497s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
497s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
497s Get:221 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
497s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
498s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
503s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
504s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
504s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
504s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
504s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
507s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
507s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
507s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
508s Get:232 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
508s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB]
508s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
508s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
511s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
513s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
514s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
514s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
514s Get:240 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
515s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
525s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
551s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
552s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
637s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
637s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
638s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hms all 1.1.3-1 [96.5 kB]
638s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-prettyunits all 1.2.0-1 [162 kB]
638s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-progress all 1.2.3-1 [91.9 kB]
638s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr2 all 1.1.1-1 [752 kB]
639s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml2 s390x 1.3.7-1 [328 kB]
639s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biomart all 2.62.1+dfsg-1 [444 kB]
640s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-farver s390x 2.1.2-1 [1353 kB]
641s Get:254 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB]
641s Get:255 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-colorspace s390x 2.1-1+dfsg-1 [1567 kB]
642s Get:256 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-munsell all 0.5.1-1 [213 kB]
642s Get:257 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
642s Get:258 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB]
643s Get:259 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-scales all 1.3.0-1 [603 kB]
644s Get:260 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
644s Get:261 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB]
646s Get:262 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
648s Get:263 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
649s Get:264 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB]
651s Get:265 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
655s Get:266 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB]
658s Get:267 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
661s Get:268 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cluster s390x 2.1.8-1 [577 kB]
661s Get:269 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB]
670s Get:270 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rpart s390x 4.1.24-1 [672 kB]
670s Get:271 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nnet s390x 7.3-20-1 [116 kB]
670s Get:272 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-foreign s390x 0.8.88-1 [249 kB]
670s Get:273 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gridextra all 2.3-3build1 [1024 kB]
671s Get:274 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-data.table s390x 1.17.0+dfsg-1 [2167 kB]
673s Get:275 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-backports s390x 1.5.0-2 [121 kB]
673s Get:276 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-checkmate s390x 2.3.2-1 [708 kB]
674s Get:277 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
674s Get:278 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rstudioapi all 0.17.1-1 [299 kB]
674s Get:279 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltable all 2.4.3-1 [388 kB]
675s Get:280 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-viridis all 0.6.5-1 [2770 kB]
678s Get:281 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formula all 1.2-5-1 [158 kB]
678s Get:282 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-chron s390x 2.3-62-1 [188 kB]
678s Get:283 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jpeg s390x 0.1-10-1 [31.3 kB]
678s Get:284 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-deldir s390x 2.0-4-1build1 [271 kB]
679s Get:285 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcppeigen s390x 0.3.4.0.2-1 [1429 kB]
680s Get:286 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-interp s390x 1.1-6-1 [1465 kB]
681s Get:287 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-latticeextra all 0.6-30-1 [2198 kB]
683s Get:288 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-acepack s390x 1.6.1-1 [92.6 kB]
683s Get:289 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hmisc s390x 5.2-2-1 [3585 kB]
688s Get:290 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dichromat all 1:2.0-0.1-1 [148 kB]
688s Get:291 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
688s Get:292 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
689s Get:293 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB]
689s Get:294 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB]
689s Get:295 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB]
691s Get:296 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB]
693s Get:297 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
694s Get:298 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB]
694s Get:299 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB]
696s Get:300 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB]
699s Get:301 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB]
701s Get:302 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB]
702s Get:303 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB]
702s Get:304 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB]
703s Get:305 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB]
709s Get:306 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
710s Get:307 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-bsgenome all 1.74.0-2 [7001 kB]
718s Get:308 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-variantannotation s390x 1.52.0-2 [3683 kB]
722s Get:309 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-protgenerics all 1.38.0-2 [239 kB]
722s Get:310 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB]
724s Get:311 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biovizbase s390x 1.54.0-2 [2857 kB]
727s Get:312 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-pwalign s390x 1.2.0-2 [750 kB]
728s Get:313 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-clipr all 0.8.0-1 [53.5 kB]
728s Get:314 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tzdb s390x 0.4.0-2 [514 kB]
728s Get:315 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vroom s390x 1.6.5-1 [865 kB]
729s Get:316 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-readr s390x 2.1.5-1 [778 kB]
730s Get:317 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plyr s390x 1.8.9-1 [835 kB]
731s Get:318 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-reshape2 s390x 1.4.4-2build1 [111 kB]
731s Get:319 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pracma all 2.4.4-3 [1710 kB]
732s Get:320 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-powerlaw all 1.0.0-1 [3725 kB]
737s Get:321 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-go.db all 3.20.0-2 [16.5 MB]
755s Get:322 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.methodss3 all 1.8.2-1 [84.0 kB]
755s Get:323 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.oo all 1.27.0-1 [979 kB]
756s Get:324 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.utils all 2.13.0-1 [1423 kB]
758s Get:325 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-cner s390x 1.42.0+dfsg-2 [9002 kB]
768s Get:326 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB]
772s Get:327 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB]
772s Get:328 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB]
773s Get:329 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB]
773s Get:330 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB]
774s Get:331 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB]
774s Get:332 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB]
775s Get:333 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB]
776s Get:334 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB]
776s Get:335 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB]
776s Get:336 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB]
776s Get:337 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB]
776s Get:338 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB]
779s Preconfiguring packages ...
779s Fetched 541 MB in 9min 22s (963 kB/s)
779s Selecting previously unselected package libisl23:s390x.
779s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
779s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
779s Unpacking libisl23:s390x (0.27-1) ...
779s Selecting previously unselected package libmpc3:s390x.
779s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
779s Unpacking libmpc3:s390x (1.3.1-1build2) ...
779s Selecting previously unselected package cpp-14-s390x-linux-gnu.
779s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
779s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
779s Selecting previously unselected package cpp-14.
779s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
779s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
779s Selecting previously unselected package cpp-s390x-linux-gnu.
779s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
779s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
779s Selecting previously unselected package cpp.
779s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
779s Unpacking cpp (4:14.2.0-1ubuntu1) ...
779s Selecting previously unselected package libcc1-0:s390x.
779s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
779s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
779s Selecting previously unselected package libgomp1:s390x.
779s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
779s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
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781s Selecting previously unselected package liblatex-tounicode-perl.
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782s Selecting previously unselected package libxcb-render0:s390x.
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782s Selecting previously unselected package libcairo2:s390x.
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782s Selecting previously unselected package libdatrie1:s390x.
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782s Selecting previously unselected package libgraphite2-3:s390x.
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782s Selecting previously unselected package libice6:s390x.
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783s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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783s Selecting previously unselected package libpng-dev:s390x.
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783s Selecting previously unselected package libtcl8.6:s390x.
783s Preparing to unpack .../108-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
783s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
783s Selecting previously unselected package libteckit0:s390x.
783s Preparing to unpack .../109-libteckit0_2.5.12+ds1-1_s390x.deb ...
783s Unpacking libteckit0:s390x (2.5.12+ds1-1) ...
783s Selecting previously unselected package libtexlua53-5:s390x.
783s Preparing to unpack .../110-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ...
783s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
783s Selecting previously unselected package libjbig0:s390x.
783s Preparing to unpack .../111-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
783s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
783s Selecting previously unselected package libwebp7:s390x.
783s Preparing to unpack .../112-libwebp7_1.5.0-0.1_s390x.deb ...
783s Unpacking libwebp7:s390x (1.5.0-0.1) ...
783s Selecting previously unselected package libtiff6:s390x.
783s Preparing to unpack .../113-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
783s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
783s Selecting previously unselected package libxft2:s390x.
783s Preparing to unpack .../114-libxft2_2.3.6-1build1_s390x.deb ...
783s Unpacking libxft2:s390x (2.3.6-1build1) ...
783s Selecting previously unselected package libxss1:s390x.
783s Preparing to unpack .../115-libxss1_1%3a1.2.3-1build3_s390x.deb ...
783s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
783s Selecting previously unselected package libtk8.6:s390x.
783s Preparing to unpack .../116-libtk8.6_8.6.16-1_s390x.deb ...
783s Unpacking libtk8.6:s390x (8.6.16-1) ...
783s Selecting previously unselected package libxt6t64:s390x.
783s Preparing to unpack .../117-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
783s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
783s Selecting previously unselected package libxmu6:s390x.
783s Preparing to unpack .../118-libxmu6_2%3a1.1.3-3build2_s390x.deb ...
783s Unpacking libxmu6:s390x (2:1.1.3-3build2) ...
783s Selecting previously unselected package libxpm4:s390x.
783s Preparing to unpack .../119-libxpm4_1%3a3.5.17-1build2_s390x.deb ...
783s Unpacking libxpm4:s390x (1:3.5.17-1build2) ...
783s Selecting previously unselected package libxaw7:s390x.
783s Preparing to unpack .../120-libxaw7_2%3a1.0.16-1_s390x.deb ...
783s Unpacking libxaw7:s390x (2:1.0.16-1) ...
783s Selecting previously unselected package libxi6:s390x.
783s Preparing to unpack .../121-libxi6_2%3a1.8.2-1_s390x.deb ...
783s Unpacking libxi6:s390x (2:1.8.2-1) ...
783s Selecting previously unselected package libzzip-0-13t64:s390x.
783s Preparing to unpack .../122-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ...
783s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
783s Selecting previously unselected package zip.
783s Preparing to unpack .../123-zip_3.0-14ubuntu2_s390x.deb ...
783s Unpacking zip (3.0-14ubuntu2) ...
783s Selecting previously unselected package unzip.
783s Preparing to unpack .../124-unzip_6.0-28ubuntu6_s390x.deb ...
783s Unpacking unzip (6.0-28ubuntu6) ...
783s Selecting previously unselected package xdg-utils.
783s Preparing to unpack .../125-xdg-utils_1.2.1-2ubuntu1_all.deb ...
783s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
783s Selecting previously unselected package r-base-core.
783s Preparing to unpack .../126-r-base-core_4.4.3-1_s390x.deb ...
783s Unpacking r-base-core (4.4.3-1) ...
784s Selecting previously unselected package r-cran-littler.
784s Preparing to unpack .../127-r-cran-littler_0.3.20-2_s390x.deb ...
784s Unpacking r-cran-littler (0.3.20-2) ...
784s Selecting previously unselected package littler.
784s Preparing to unpack .../128-littler_0.3.20-2_all.deb ...
784s Unpacking littler (0.3.20-2) ...
784s Selecting previously unselected package node-bootstrap-sass.
784s Preparing to unpack .../129-node-bootstrap-sass_3.4.3-2_all.deb ...
784s Unpacking node-bootstrap-sass (3.4.3-2) ...
784s Selecting previously unselected package node-html5shiv.
784s Preparing to unpack .../130-node-html5shiv_3.7.3+dfsg-5_all.deb ...
784s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
784s Selecting previously unselected package node-normalize.css.
784s Preparing to unpack .../131-node-normalize.css_8.0.1-5_all.deb ...
784s Unpacking node-normalize.css (8.0.1-5) ...
784s Selecting previously unselected package pandoc-data.
784s Preparing to unpack .../132-pandoc-data_3.1.11.1-3build1_all.deb ...
784s Unpacking pandoc-data (3.1.11.1-3build1) ...
784s Selecting previously unselected package pandoc.
784s Preparing to unpack .../133-pandoc_3.1.11.1+ds-2_s390x.deb ...
784s Unpacking pandoc (3.1.11.1+ds-2) ...
785s Selecting previously unselected package liblzma-dev:s390x.
785s Preparing to unpack .../134-liblzma-dev_5.6.4-1_s390x.deb ...
785s Unpacking liblzma-dev:s390x (5.6.4-1) ...
785s Selecting previously unselected package pkgconf-bin.
785s Preparing to unpack .../135-pkgconf-bin_1.8.1-4_s390x.deb ...
785s Unpacking pkgconf-bin (1.8.1-4) ...
785s Selecting previously unselected package pkgconf:s390x.
785s Preparing to unpack .../136-pkgconf_1.8.1-4_s390x.deb ...
785s Unpacking pkgconf:s390x (1.8.1-4) ...
785s Selecting previously unselected package libtirpc-dev:s390x.
785s Preparing to unpack .../137-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
785s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
785s Selecting previously unselected package r-base-dev.
785s Preparing to unpack .../138-r-base-dev_4.4.3-1_all.deb ...
785s Unpacking r-base-dev (4.4.3-1) ...
785s Selecting previously unselected package pkg-r-autopkgtest.
785s Preparing to unpack .../139-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
785s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
785s Selecting previously unselected package r-bioc-biocgenerics.
785s Preparing to unpack .../140-r-bioc-biocgenerics_0.52.0-2_all.deb ...
785s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
785s Selecting previously unselected package r-bioc-biobase.
785s Preparing to unpack .../141-r-bioc-biobase_2.66.0-2_s390x.deb ...
785s Unpacking r-bioc-biobase (2.66.0-2) ...
785s Selecting previously unselected package r-bioc-s4vectors.
785s Preparing to unpack .../142-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ...
785s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
785s Selecting previously unselected package r-bioc-iranges.
785s Preparing to unpack .../143-r-bioc-iranges_2.40.1-2_s390x.deb ...
785s Unpacking r-bioc-iranges (2.40.1-2) ...
785s Selecting previously unselected package r-cran-dbi.
785s Preparing to unpack .../144-r-cran-dbi_1.2.3-1_all.deb ...
785s Unpacking r-cran-dbi (1.2.3-1) ...
785s Selecting previously unselected package r-cran-bit.
785s Preparing to unpack .../145-r-cran-bit_4.6.0+dfsg-1_s390x.deb ...
785s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
785s Selecting previously unselected package r-cran-bit64.
785s Preparing to unpack .../146-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ...
785s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ...
785s Selecting previously unselected package r-cran-rlang.
785s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_s390x.deb ...
785s Unpacking r-cran-rlang (1.1.5-1) ...
785s Selecting previously unselected package r-cran-cli.
785s Preparing to unpack .../148-r-cran-cli_3.6.4-1_s390x.deb ...
785s Unpacking r-cran-cli (3.6.4-1) ...
785s Selecting previously unselected package r-cran-glue.
785s Preparing to unpack .../149-r-cran-glue_1.8.0-1_s390x.deb ...
785s Unpacking r-cran-glue (1.8.0-1) ...
785s Selecting previously unselected package r-cran-lifecycle.
785s Preparing to unpack .../150-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
785s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
785s Selecting previously unselected package r-cran-vctrs.
785s Preparing to unpack .../151-r-cran-vctrs_0.6.5-1_s390x.deb ...
785s Unpacking r-cran-vctrs (0.6.5-1) ...
785s Selecting previously unselected package r-cran-blob.
785s Preparing to unpack .../152-r-cran-blob_1.2.4-1_all.deb ...
785s Unpacking r-cran-blob (1.2.4-1) ...
785s Selecting previously unselected package r-cran-fastmap.
785s Preparing to unpack .../153-r-cran-fastmap_1.2.0-1_s390x.deb ...
785s Unpacking r-cran-fastmap (1.2.0-1) ...
785s Selecting previously unselected package r-cran-cachem.
785s Preparing to unpack .../154-r-cran-cachem_1.1.0-1_s390x.deb ...
785s Unpacking r-cran-cachem (1.1.0-1) ...
785s Selecting previously unselected package r-cran-memoise.
785s Preparing to unpack .../155-r-cran-memoise_2.0.1-1_all.deb ...
785s Unpacking r-cran-memoise (2.0.1-1) ...
785s Selecting previously unselected package r-cran-pkgconfig.
785s Preparing to unpack .../156-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
785s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
785s Selecting previously unselected package r-cran-plogr.
785s Preparing to unpack .../157-r-cran-plogr_0.2.0-3build1_all.deb ...
785s Unpacking r-cran-plogr (0.2.0-3build1) ...
785s Selecting previously unselected package r-cran-cpp11.
785s Preparing to unpack .../158-r-cran-cpp11_0.5.2-1_all.deb ...
785s Unpacking r-cran-cpp11 (0.5.2-1) ...
785s Selecting previously unselected package r-cran-rsqlite.
785s Preparing to unpack .../159-r-cran-rsqlite_2.3.9-1_s390x.deb ...
785s Unpacking r-cran-rsqlite (2.3.9-1) ...
785s Selecting previously unselected package r-cran-curl.
785s Preparing to unpack .../160-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ...
785s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
785s Selecting previously unselected package r-cran-jsonlite.
785s Preparing to unpack .../161-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
785s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
785s Selecting previously unselected package r-cran-mime.
785s Preparing to unpack .../162-r-cran-mime_0.12-2_s390x.deb ...
785s Unpacking r-cran-mime (0.12-2) ...
785s Selecting previously unselected package r-cran-sys.
785s Preparing to unpack .../163-r-cran-sys_3.4.3-1_s390x.deb ...
785s Unpacking r-cran-sys (3.4.3-1) ...
785s Selecting previously unselected package r-cran-askpass.
785s Preparing to unpack .../164-r-cran-askpass_1.2.1-1_s390x.deb ...
785s Unpacking r-cran-askpass (1.2.1-1) ...
785s Selecting previously unselected package r-cran-openssl.
785s Preparing to unpack .../165-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ...
785s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
785s Selecting previously unselected package r-cran-r6.
785s Preparing to unpack .../166-r-cran-r6_2.6.1-1_all.deb ...
785s Unpacking r-cran-r6 (2.6.1-1) ...
785s Selecting previously unselected package r-cran-httr.
785s Preparing to unpack .../167-r-cran-httr_1.4.7+dfsg-1_all.deb ...
785s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
785s Selecting previously unselected package r-cran-png.
785s Preparing to unpack .../168-r-cran-png_0.1-8-1build2_s390x.deb ...
785s Unpacking r-cran-png (0.1-8-1build2) ...
785s Selecting previously unselected package r-bioc-zlibbioc.
785s Preparing to unpack .../169-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
785s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
785s Selecting previously unselected package r-bioc-xvector.
785s Preparing to unpack .../170-r-bioc-xvector_0.46.0-2_s390x.deb ...
785s Unpacking r-bioc-xvector (0.46.0-2) ...
785s Selecting previously unselected package r-bioc-ucsc.utils.
786s Preparing to unpack .../171-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
786s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
786s Selecting previously unselected package r-bioc-genomeinfodbdata.
786s Preparing to unpack .../172-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
786s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
786s Selecting previously unselected package r-bioc-genomeinfodb.
786s Preparing to unpack .../173-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
786s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
786s Selecting previously unselected package r-cran-crayon.
786s Preparing to unpack .../174-r-cran-crayon_1.5.3-1_all.deb ...
786s Unpacking r-cran-crayon (1.5.3-1) ...
786s Selecting previously unselected package r-bioc-biostrings.
786s Preparing to unpack .../175-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ...
786s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
786s Selecting previously unselected package r-bioc-keggrest.
786s Preparing to unpack .../176-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ...
786s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ...
786s Selecting previously unselected package r-bioc-annotationdbi.
786s Preparing to unpack .../177-r-bioc-annotationdbi_1.68.0-2_all.deb ...
786s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
786s Selecting previously unselected package r-cran-xml.
786s Preparing to unpack .../178-r-cran-xml_3.99-0.18-1_s390x.deb ...
786s Unpacking r-cran-xml (3.99-0.18-1) ...
786s Selecting previously unselected package r-cran-xtable.
786s Preparing to unpack .../179-r-cran-xtable_1%3a1.8-4-2_all.deb ...
786s Unpacking r-cran-xtable (1:1.8-4-2) ...
786s Selecting previously unselected package r-bioc-annotate.
786s Preparing to unpack .../180-r-bioc-annotate_1.84.0+dfsg-2_all.deb ...
786s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ...
786s Selecting previously unselected package r-bioc-genomicranges.
786s Preparing to unpack .../181-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ...
786s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
786s Selecting previously unselected package r-cran-lazyeval.
786s Preparing to unpack .../182-r-cran-lazyeval_0.2.2-1build1_s390x.deb ...
786s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
786s Selecting previously unselected package r-bioc-annotationfilter.
786s Preparing to unpack .../183-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ...
786s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ...
786s Selecting previously unselected package r-cran-generics.
786s Preparing to unpack .../184-r-cran-generics_0.1.3-1_all.deb ...
786s Unpacking r-cran-generics (0.1.3-1) ...
786s Selecting previously unselected package r-cran-magrittr.
786s Preparing to unpack .../185-r-cran-magrittr_2.0.3-1_s390x.deb ...
786s Unpacking r-cran-magrittr (2.0.3-1) ...
786s Selecting previously unselected package r-cran-utf8.
786s Preparing to unpack .../186-r-cran-utf8_1.2.4-1_s390x.deb ...
786s Unpacking r-cran-utf8 (1.2.4-1) ...
786s Selecting previously unselected package r-cran-pillar.
786s Preparing to unpack .../187-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
786s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
786s Selecting previously unselected package r-cran-fansi.
786s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_s390x.deb ...
786s Unpacking r-cran-fansi (1.0.5-1) ...
786s Selecting previously unselected package r-cran-tibble.
786s Preparing to unpack .../189-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ...
786s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
786s Selecting previously unselected package r-cran-withr.
786s Preparing to unpack .../190-r-cran-withr_3.0.2+dfsg-1_all.deb ...
786s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
786s Selecting previously unselected package r-cran-tidyselect.
786s Preparing to unpack .../191-r-cran-tidyselect_1.2.1+dfsg-1_s390x.deb ...
786s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
786s Selecting previously unselected package r-cran-dplyr.
786s Preparing to unpack .../192-r-cran-dplyr_1.1.4-4_s390x.deb ...
786s Unpacking r-cran-dplyr (1.1.4-4) ...
786s Selecting previously unselected package r-cran-purrr.
786s Preparing to unpack .../193-r-cran-purrr_1.0.4-1_s390x.deb ...
786s Unpacking r-cran-purrr (1.0.4-1) ...
786s Selecting previously unselected package r-cran-stringi.
786s Preparing to unpack .../194-r-cran-stringi_1.8.4-1build1_s390x.deb ...
786s Unpacking r-cran-stringi (1.8.4-1build1) ...
786s Selecting previously unselected package r-cran-stringr.
786s Preparing to unpack .../195-r-cran-stringr_1.5.1-1_all.deb ...
786s Unpacking r-cran-stringr (1.5.1-1) ...
786s Selecting previously unselected package r-cran-tidyr.
786s Preparing to unpack .../196-r-cran-tidyr_1.3.1-1_s390x.deb ...
786s Unpacking r-cran-tidyr (1.3.1-1) ...
786s Selecting previously unselected package r-cran-dbplyr.
786s Preparing to unpack .../197-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ...
786s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ...
786s Selecting previously unselected package r-cran-filelock.
786s Preparing to unpack .../198-r-cran-filelock_1.0.3-1_s390x.deb ...
786s Unpacking r-cran-filelock (1.0.3-1) ...
786s Selecting previously unselected package r-bioc-biocfilecache.
786s Preparing to unpack .../199-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ...
786s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ...
786s Selecting previously unselected package r-bioc-biocio.
786s Preparing to unpack .../200-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
786s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
786s Selecting previously unselected package r-cran-formatr.
786s Preparing to unpack .../201-r-cran-formatr_1.14-2_all.deb ...
786s Unpacking r-cran-formatr (1.14-2) ...
786s Selecting previously unselected package r-cran-lambda.r.
786s Preparing to unpack .../202-r-cran-lambda.r_1.2.4-2build1_all.deb ...
786s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
786s Selecting previously unselected package r-cran-futile.options.
786s Preparing to unpack .../203-r-cran-futile.options_1.0.1-3build1_all.deb ...
786s Unpacking r-cran-futile.options (1.0.1-3build1) ...
786s Selecting previously unselected package r-cran-futile.logger.
786s Preparing to unpack .../204-r-cran-futile.logger_1.4.3-4build1_all.deb ...
786s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
786s Selecting previously unselected package r-cran-snow.
786s Preparing to unpack .../205-r-cran-snow_1%3a0.4.4-2_all.deb ...
786s Unpacking r-cran-snow (1:0.4.4-2) ...
786s Selecting previously unselected package r-cran-codetools.
786s Preparing to unpack .../206-r-cran-codetools_0.2-20-1_all.deb ...
786s Unpacking r-cran-codetools (0.2-20-1) ...
786s Selecting previously unselected package r-cran-bh.
786s Preparing to unpack .../207-r-cran-bh_1.84.0-1_all.deb ...
786s Unpacking r-cran-bh (1.84.0-1) ...
786s Selecting previously unselected package r-bioc-biocparallel.
786s Preparing to unpack .../208-r-bioc-biocparallel_1.40.0-2_s390x.deb ...
786s Unpacking r-bioc-biocparallel (1.40.0-2) ...
786s Selecting previously unselected package r-cran-base64enc.
786s Preparing to unpack .../209-r-cran-base64enc_0.1-3-3_s390x.deb ...
786s Unpacking r-cran-base64enc (0.1-3-3) ...
786s Selecting previously unselected package r-cran-digest.
786s Preparing to unpack .../210-r-cran-digest_0.6.37-1_s390x.deb ...
786s Unpacking r-cran-digest (0.6.37-1) ...
786s Selecting previously unselected package r-cran-htmltools.
786s Preparing to unpack .../211-r-cran-htmltools_0.5.8.1-1_s390x.deb ...
786s Unpacking r-cran-htmltools (0.5.8.1-1) ...
786s Selecting previously unselected package r-cran-evaluate.
786s Preparing to unpack .../212-r-cran-evaluate_1.0.3-1_all.deb ...
786s Unpacking r-cran-evaluate (1.0.3-1) ...
786s Selecting previously unselected package r-cran-xfun.
786s Preparing to unpack .../213-r-cran-xfun_0.51+dfsg-1_s390x.deb ...
786s Unpacking r-cran-xfun (0.51+dfsg-1) ...
786s Selecting previously unselected package r-cran-highr.
786s Preparing to unpack .../214-r-cran-highr_0.11+dfsg-1_all.deb ...
786s Unpacking r-cran-highr (0.11+dfsg-1) ...
786s Selecting previously unselected package r-cran-yaml.
786s Preparing to unpack .../215-r-cran-yaml_2.3.10-1_s390x.deb ...
786s Unpacking r-cran-yaml (2.3.10-1) ...
786s Selecting previously unselected package libjs-mathjax.
786s Preparing to unpack .../216-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
786s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
787s Selecting previously unselected package r-cran-knitr.
787s Preparing to unpack .../217-r-cran-knitr_1.49+dfsg-1_all.deb ...
787s Unpacking r-cran-knitr (1.49+dfsg-1) ...
787s Selecting previously unselected package r-cran-jquerylib.
787s Preparing to unpack .../218-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
787s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
787s Selecting previously unselected package r-cran-fs.
787s Preparing to unpack .../219-r-cran-fs_1.6.5+dfsg-1_s390x.deb ...
787s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
787s Selecting previously unselected package r-cran-rappdirs.
787s Preparing to unpack .../220-r-cran-rappdirs_0.3.3-1_s390x.deb ...
787s Unpacking r-cran-rappdirs (0.3.3-1) ...
787s Selecting previously unselected package r-cran-sass.
787s Preparing to unpack .../221-r-cran-sass_0.4.9+dfsg-1_s390x.deb ...
787s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
787s Selecting previously unselected package r-cran-bslib.
787s Preparing to unpack .../222-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
787s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
787s Selecting previously unselected package r-cran-fontawesome.
787s Preparing to unpack .../223-r-cran-fontawesome_0.5.3-1_all.deb ...
787s Unpacking r-cran-fontawesome (0.5.3-1) ...
787s Selecting previously unselected package r-cran-tinytex.
787s Preparing to unpack .../224-r-cran-tinytex_0.56-1_all.deb ...
787s Unpacking r-cran-tinytex (0.56-1) ...
787s Selecting previously unselected package libjs-modernizr.
787s Preparing to unpack .../225-libjs-modernizr_3.13.0-0.1_all.deb ...
787s Unpacking libjs-modernizr (3.13.0-0.1) ...
787s Selecting previously unselected package r-cran-pkgkitten.
787s Preparing to unpack .../226-r-cran-pkgkitten_0.2.4-1_all.deb ...
787s Unpacking r-cran-pkgkitten (0.2.4-1) ...
787s Selecting previously unselected package r-cran-rcpp.
787s Preparing to unpack .../227-r-cran-rcpp_1.0.14-1_s390x.deb ...
787s Unpacking r-cran-rcpp (1.0.14-1) ...
787s Selecting previously unselected package r-cran-later.
787s Preparing to unpack .../228-r-cran-later_1.4.1+dfsg-1_s390x.deb ...
787s Unpacking r-cran-later (1.4.1+dfsg-1) ...
787s Selecting previously unselected package r-cran-promises.
787s Preparing to unpack .../229-r-cran-promises_1.3.2+dfsg-1_s390x.deb ...
787s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
787s Selecting previously unselected package r-cran-httpuv.
787s Preparing to unpack .../230-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ...
787s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
787s Selecting previously unselected package r-cran-sourcetools.
787s Preparing to unpack .../231-r-cran-sourcetools_0.1.7-1-1_s390x.deb ...
787s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
787s Selecting previously unselected package r-cran-commonmark.
787s Preparing to unpack .../232-r-cran-commonmark_1.9.2-2_s390x.deb ...
787s Unpacking r-cran-commonmark (1.9.2-2) ...
787s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
787s Preparing to unpack .../233-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
787s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
787s Selecting previously unselected package r-cran-shiny.
787s Preparing to unpack .../234-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
787s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
787s Selecting previously unselected package r-cran-rmarkdown.
787s Preparing to unpack .../235-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
787s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
787s Selecting previously unselected package r-cran-bookdown.
787s Preparing to unpack .../236-r-cran-bookdown_0.42+dfsg-1_all.deb ...
787s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
787s Selecting previously unselected package r-cran-biocmanager.
787s Preparing to unpack .../237-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
787s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
787s Selecting previously unselected package tex-common.
787s Preparing to unpack .../238-tex-common_6.19_all.deb ...
787s Unpacking tex-common (6.19) ...
787s Selecting previously unselected package t1utils.
787s Preparing to unpack .../239-t1utils_1.41-4build3_s390x.deb ...
787s Unpacking t1utils (1.41-4build3) ...
787s Selecting previously unselected package texlive-binaries.
787s Preparing to unpack .../240-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ...
788s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
788s Selecting previously unselected package texlive-base.
788s Preparing to unpack .../241-texlive-base_2024.20250114-1_all.deb ...
788s Unpacking texlive-base (2024.20250114-1) ...
789s Selecting previously unselected package texlive-latex-base.
789s Preparing to unpack .../242-texlive-latex-base_2024.20250114-1_all.deb ...
789s Unpacking texlive-latex-base (2024.20250114-1) ...
789s Selecting previously unselected package texlive-bibtex-extra.
789s Preparing to unpack .../243-texlive-bibtex-extra_2024.20250114-1_all.deb ...
789s Unpacking texlive-bibtex-extra (2024.20250114-1) ...
792s Selecting previously unselected package r-bioc-biocversion.
792s Preparing to unpack .../244-r-bioc-biocversion_3.20.0-2_all.deb ...
792s Unpacking r-bioc-biocversion (3.20.0-2) ...
792s Selecting previously unselected package r-bioc-biocstyle.
792s Preparing to unpack .../245-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ...
792s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
792s Selecting previously unselected package r-cran-hms.
792s Preparing to unpack .../246-r-cran-hms_1.1.3-1_all.deb ...
792s Unpacking r-cran-hms (1.1.3-1) ...
792s Selecting previously unselected package r-cran-prettyunits.
792s Preparing to unpack .../247-r-cran-prettyunits_1.2.0-1_all.deb ...
792s Unpacking r-cran-prettyunits (1.2.0-1) ...
792s Selecting previously unselected package r-cran-progress.
792s Preparing to unpack .../248-r-cran-progress_1.2.3-1_all.deb ...
792s Unpacking r-cran-progress (1.2.3-1) ...
792s Selecting previously unselected package r-cran-httr2.
792s Preparing to unpack .../249-r-cran-httr2_1.1.1-1_all.deb ...
792s Unpacking r-cran-httr2 (1.1.1-1) ...
792s Selecting previously unselected package r-cran-xml2.
792s Preparing to unpack .../250-r-cran-xml2_1.3.7-1_s390x.deb ...
792s Unpacking r-cran-xml2 (1.3.7-1) ...
792s Selecting previously unselected package r-bioc-biomart.
792s Preparing to unpack .../251-r-bioc-biomart_2.62.1+dfsg-1_all.deb ...
792s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ...
792s Selecting previously unselected package r-cran-farver.
792s Preparing to unpack .../252-r-cran-farver_2.1.2-1_s390x.deb ...
792s Unpacking r-cran-farver (2.1.2-1) ...
792s Selecting previously unselected package r-cran-labeling.
792s Preparing to unpack .../253-r-cran-labeling_0.4.3-1_all.deb ...
792s Unpacking r-cran-labeling (0.4.3-1) ...
792s Selecting previously unselected package r-cran-colorspace.
792s Preparing to unpack .../254-r-cran-colorspace_2.1-1+dfsg-1_s390x.deb ...
792s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
792s Selecting previously unselected package r-cran-munsell.
792s Preparing to unpack .../255-r-cran-munsell_0.5.1-1_all.deb ...
792s Unpacking r-cran-munsell (0.5.1-1) ...
792s Selecting previously unselected package r-cran-rcolorbrewer.
792s Preparing to unpack .../256-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
792s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
792s Selecting previously unselected package r-cran-viridislite.
792s Preparing to unpack .../257-r-cran-viridislite_0.4.2-2_all.deb ...
792s Unpacking r-cran-viridislite (0.4.2-2) ...
792s Selecting previously unselected package r-cran-scales.
792s Preparing to unpack .../258-r-cran-scales_1.3.0-1_all.deb ...
792s Unpacking r-cran-scales (1.3.0-1) ...
792s Selecting previously unselected package r-cran-gtable.
792s Preparing to unpack .../259-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
792s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
792s Selecting previously unselected package r-cran-isoband.
792s Preparing to unpack .../260-r-cran-isoband_0.2.7-1_s390x.deb ...
792s Unpacking r-cran-isoband (0.2.7-1) ...
792s Selecting previously unselected package r-cran-mass.
792s Preparing to unpack .../261-r-cran-mass_7.3-64-1_s390x.deb ...
792s Unpacking r-cran-mass (7.3-64-1) ...
792s Selecting previously unselected package r-cran-lattice.
792s Preparing to unpack .../262-r-cran-lattice_0.22-6-1_s390x.deb ...
792s Unpacking r-cran-lattice (0.22-6-1) ...
792s Selecting previously unselected package r-cran-nlme.
792s Preparing to unpack .../263-r-cran-nlme_3.1.167-1_s390x.deb ...
792s Unpacking r-cran-nlme (3.1.167-1) ...
792s Selecting previously unselected package r-cran-matrix.
792s Preparing to unpack .../264-r-cran-matrix_1.7-3-1_s390x.deb ...
792s Unpacking r-cran-matrix (1.7-3-1) ...
792s Selecting previously unselected package r-cran-mgcv.
792s Preparing to unpack .../265-r-cran-mgcv_1.9-1-1_s390x.deb ...
792s Unpacking r-cran-mgcv (1.9-1-1) ...
792s Selecting previously unselected package r-cran-ggplot2.
792s Preparing to unpack .../266-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
792s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
792s Selecting previously unselected package r-cran-cluster.
792s Preparing to unpack .../267-r-cran-cluster_2.1.8-1_s390x.deb ...
792s Unpacking r-cran-cluster (2.1.8-1) ...
792s Selecting previously unselected package r-cran-survival.
792s Preparing to unpack .../268-r-cran-survival_3.8-3-1_s390x.deb ...
792s Unpacking r-cran-survival (3.8-3-1) ...
792s Selecting previously unselected package r-cran-rpart.
792s Preparing to unpack .../269-r-cran-rpart_4.1.24-1_s390x.deb ...
792s Unpacking r-cran-rpart (4.1.24-1) ...
792s Selecting previously unselected package r-cran-nnet.
792s Preparing to unpack .../270-r-cran-nnet_7.3-20-1_s390x.deb ...
792s Unpacking r-cran-nnet (7.3-20-1) ...
792s Selecting previously unselected package r-cran-foreign.
792s Preparing to unpack .../271-r-cran-foreign_0.8.88-1_s390x.deb ...
792s Unpacking r-cran-foreign (0.8.88-1) ...
792s Selecting previously unselected package r-cran-gridextra.
792s Preparing to unpack .../272-r-cran-gridextra_2.3-3build1_all.deb ...
792s Unpacking r-cran-gridextra (2.3-3build1) ...
792s Selecting previously unselected package r-cran-data.table.
792s Preparing to unpack .../273-r-cran-data.table_1.17.0+dfsg-1_s390x.deb ...
792s Unpacking r-cran-data.table (1.17.0+dfsg-1) ...
792s Selecting previously unselected package r-cran-backports.
792s Preparing to unpack .../274-r-cran-backports_1.5.0-2_s390x.deb ...
792s Unpacking r-cran-backports (1.5.0-2) ...
792s Selecting previously unselected package r-cran-checkmate.
792s Preparing to unpack .../275-r-cran-checkmate_2.3.2-1_s390x.deb ...
792s Unpacking r-cran-checkmate (2.3.2-1) ...
793s Selecting previously unselected package r-cran-htmlwidgets.
793s Preparing to unpack .../276-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
793s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
793s Selecting previously unselected package r-cran-rstudioapi.
793s Preparing to unpack .../277-r-cran-rstudioapi_0.17.1-1_all.deb ...
793s Unpacking r-cran-rstudioapi (0.17.1-1) ...
793s Selecting previously unselected package r-cran-htmltable.
793s Preparing to unpack .../278-r-cran-htmltable_2.4.3-1_all.deb ...
793s Unpacking r-cran-htmltable (2.4.3-1) ...
793s Selecting previously unselected package r-cran-viridis.
793s Preparing to unpack .../279-r-cran-viridis_0.6.5-1_all.deb ...
793s Unpacking r-cran-viridis (0.6.5-1) ...
793s Selecting previously unselected package r-cran-formula.
793s Preparing to unpack .../280-r-cran-formula_1.2-5-1_all.deb ...
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793s Selecting previously unselected package r-cran-chron.
793s Preparing to unpack .../281-r-cran-chron_2.3-62-1_s390x.deb ...
793s Unpacking r-cran-chron (2.3-62-1) ...
793s Selecting previously unselected package r-cran-jpeg.
793s Preparing to unpack .../282-r-cran-jpeg_0.1-10-1_s390x.deb ...
793s Unpacking r-cran-jpeg (0.1-10-1) ...
793s Selecting previously unselected package r-cran-deldir.
793s Preparing to unpack .../283-r-cran-deldir_2.0-4-1build1_s390x.deb ...
793s Unpacking r-cran-deldir (2.0-4-1build1) ...
793s Selecting previously unselected package r-cran-rcppeigen.
793s Preparing to unpack .../284-r-cran-rcppeigen_0.3.4.0.2-1_s390x.deb ...
793s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
793s Selecting previously unselected package r-cran-interp.
793s Preparing to unpack .../285-r-cran-interp_1.1-6-1_s390x.deb ...
793s Unpacking r-cran-interp (1.1-6-1) ...
793s Selecting previously unselected package r-cran-latticeextra.
793s Preparing to unpack .../286-r-cran-latticeextra_0.6-30-1_all.deb ...
793s Unpacking r-cran-latticeextra (0.6-30-1) ...
793s Selecting previously unselected package r-cran-acepack.
793s Preparing to unpack .../287-r-cran-acepack_1.6.1-1_s390x.deb ...
793s Unpacking r-cran-acepack (1.6.1-1) ...
793s Selecting previously unselected package r-cran-hmisc.
793s Preparing to unpack .../288-r-cran-hmisc_5.2-2-1_s390x.deb ...
793s Unpacking r-cran-hmisc (5.2-2-1) ...
793s Selecting previously unselected package r-cran-dichromat.
793s Preparing to unpack .../289-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ...
793s Unpacking r-cran-dichromat (1:2.0-0.1-1) ...
793s Selecting previously unselected package r-cran-matrixstats.
793s Preparing to unpack .../290-r-cran-matrixstats_1.5.0-1_s390x.deb ...
793s Unpacking r-cran-matrixstats (1.5.0-1) ...
793s Selecting previously unselected package r-bioc-matrixgenerics.
793s Preparing to unpack .../291-r-bioc-matrixgenerics_1.18.1-1_all.deb ...
793s Unpacking r-bioc-matrixgenerics (1.18.1-1) ...
793s Selecting previously unselected package r-cran-abind.
793s Preparing to unpack .../292-r-cran-abind_1.4-8-1_all.deb ...
793s Unpacking r-cran-abind (1.4-8-1) ...
793s Selecting previously unselected package r-bioc-s4arrays.
793s Preparing to unpack .../293-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ...
793s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
793s Selecting previously unselected package r-bioc-sparsearray.
793s Preparing to unpack .../294-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ...
793s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ...
793s Selecting previously unselected package r-bioc-delayedarray.
793s Preparing to unpack .../295-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ...
793s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
793s Selecting previously unselected package r-bioc-summarizedexperiment.
793s Preparing to unpack .../296-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ...
793s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
793s Selecting previously unselected package r-cran-bitops.
793s Preparing to unpack .../297-r-cran-bitops_1.0-9-1_s390x.deb ...
793s Unpacking r-cran-bitops (1.0-9-1) ...
793s Selecting previously unselected package r-bioc-rhtslib.
793s Preparing to unpack .../298-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ...
793s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
793s Selecting previously unselected package r-bioc-rsamtools.
793s Preparing to unpack .../299-r-bioc-rsamtools_2.22.0+dfsg-2_s390x.deb ...
793s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ...
793s Selecting previously unselected package r-bioc-genomicalignments.
793s Preparing to unpack .../300-r-bioc-genomicalignments_1.42.0-2_s390x.deb ...
793s Unpacking r-bioc-genomicalignments (1.42.0-2) ...
793s Selecting previously unselected package r-cran-rcurl.
793s Preparing to unpack .../301-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ...
793s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
793s Selecting previously unselected package r-cran-rjson.
793s Preparing to unpack .../302-r-cran-rjson_0.2.23-1_s390x.deb ...
793s Unpacking r-cran-rjson (0.2.23-1) ...
793s Selecting previously unselected package r-cran-restfulr.
793s Preparing to unpack .../303-r-cran-restfulr_0.0.15-1_s390x.deb ...
793s Unpacking r-cran-restfulr (0.0.15-1) ...
793s Selecting previously unselected package r-bioc-rtracklayer.
793s Preparing to unpack .../304-r-bioc-rtracklayer_1.66.0-2_s390x.deb ...
793s Unpacking r-bioc-rtracklayer (1.66.0-2) ...
793s Selecting previously unselected package r-bioc-genomicfeatures.
793s Preparing to unpack .../305-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ...
793s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
793s Selecting previously unselected package r-bioc-bsgenome.
793s Preparing to unpack .../306-r-bioc-bsgenome_1.74.0-2_all.deb ...
793s Unpacking r-bioc-bsgenome (1.74.0-2) ...
793s Selecting previously unselected package r-bioc-variantannotation.
793s Preparing to unpack .../307-r-bioc-variantannotation_1.52.0-2_s390x.deb ...
793s Unpacking r-bioc-variantannotation (1.52.0-2) ...
793s Selecting previously unselected package r-bioc-protgenerics.
793s Preparing to unpack .../308-r-bioc-protgenerics_1.38.0-2_all.deb ...
793s Unpacking r-bioc-protgenerics (1.38.0-2) ...
793s Selecting previously unselected package r-bioc-ensembldb.
793s Preparing to unpack .../309-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ...
793s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ...
793s Selecting previously unselected package r-bioc-biovizbase.
793s Preparing to unpack .../310-r-bioc-biovizbase_1.54.0-2_s390x.deb ...
793s Unpacking r-bioc-biovizbase (1.54.0-2) ...
793s Selecting previously unselected package r-bioc-pwalign.
793s Preparing to unpack .../311-r-bioc-pwalign_1.2.0-2_s390x.deb ...
793s Unpacking r-bioc-pwalign (1.2.0-2) ...
793s Selecting previously unselected package r-cran-clipr.
793s Preparing to unpack .../312-r-cran-clipr_0.8.0-1_all.deb ...
793s Unpacking r-cran-clipr (0.8.0-1) ...
793s Selecting previously unselected package r-cran-tzdb.
793s Preparing to unpack .../313-r-cran-tzdb_0.4.0-2_s390x.deb ...
793s Unpacking r-cran-tzdb (0.4.0-2) ...
793s Selecting previously unselected package r-cran-vroom.
793s Preparing to unpack .../314-r-cran-vroom_1.6.5-1_s390x.deb ...
793s Unpacking r-cran-vroom (1.6.5-1) ...
793s Selecting previously unselected package r-cran-readr.
793s Preparing to unpack .../315-r-cran-readr_2.1.5-1_s390x.deb ...
793s Unpacking r-cran-readr (2.1.5-1) ...
793s Selecting previously unselected package r-cran-plyr.
793s Preparing to unpack .../316-r-cran-plyr_1.8.9-1_s390x.deb ...
793s Unpacking r-cran-plyr (1.8.9-1) ...
793s Selecting previously unselected package r-cran-reshape2.
793s Preparing to unpack .../317-r-cran-reshape2_1.4.4-2build1_s390x.deb ...
793s Unpacking r-cran-reshape2 (1.4.4-2build1) ...
793s Selecting previously unselected package r-cran-pracma.
793s Preparing to unpack .../318-r-cran-pracma_2.4.4-3_all.deb ...
793s Unpacking r-cran-pracma (2.4.4-3) ...
793s Selecting previously unselected package r-cran-powerlaw.
793s Preparing to unpack .../319-r-cran-powerlaw_1.0.0-1_all.deb ...
793s Unpacking r-cran-powerlaw (1.0.0-1) ...
793s Selecting previously unselected package r-bioc-go.db.
793s Preparing to unpack .../320-r-bioc-go.db_3.20.0-2_all.deb ...
793s Unpacking r-bioc-go.db (3.20.0-2) ...
794s Selecting previously unselected package r-cran-r.methodss3.
794s Preparing to unpack .../321-r-cran-r.methodss3_1.8.2-1_all.deb ...
794s Unpacking r-cran-r.methodss3 (1.8.2-1) ...
794s Selecting previously unselected package r-cran-r.oo.
794s Preparing to unpack .../322-r-cran-r.oo_1.27.0-1_all.deb ...
794s Unpacking r-cran-r.oo (1.27.0-1) ...
794s Selecting previously unselected package r-cran-r.utils.
794s Preparing to unpack .../323-r-cran-r.utils_2.13.0-1_all.deb ...
794s Unpacking r-cran-r.utils (2.13.0-1) ...
794s Selecting previously unselected package r-bioc-cner.
794s Preparing to unpack .../324-r-bioc-cner_1.42.0+dfsg-2_s390x.deb ...
794s Unpacking r-bioc-cner (1.42.0+dfsg-2) ...
794s Selecting previously unselected package r-bioc-gviz.
794s Preparing to unpack .../325-r-bioc-gviz_1.50.0+dfsg-2_all.deb ...
794s Unpacking r-bioc-gviz (1.50.0+dfsg-2) ...
794s Selecting previously unselected package r-cran-brio.
794s Preparing to unpack .../326-r-cran-brio_1.1.5-1_s390x.deb ...
794s Unpacking r-cran-brio (1.1.5-1) ...
794s Selecting previously unselected package r-cran-ps.
794s Preparing to unpack .../327-r-cran-ps_1.9.0-1_s390x.deb ...
794s Unpacking r-cran-ps (1.9.0-1) ...
794s Selecting previously unselected package r-cran-processx.
794s Preparing to unpack .../328-r-cran-processx_3.8.6-1_s390x.deb ...
794s Unpacking r-cran-processx (3.8.6-1) ...
794s Selecting previously unselected package r-cran-callr.
794s Preparing to unpack .../329-r-cran-callr_3.7.6-1_all.deb ...
794s Unpacking r-cran-callr (3.7.6-1) ...
794s Selecting previously unselected package r-cran-desc.
794s Preparing to unpack .../330-r-cran-desc_1.4.3-1_all.deb ...
794s Unpacking r-cran-desc (1.4.3-1) ...
794s Selecting previously unselected package r-cran-diffobj.
794s Preparing to unpack .../331-r-cran-diffobj_0.3.5-1_s390x.deb ...
794s Unpacking r-cran-diffobj (0.3.5-1) ...
794s Selecting previously unselected package r-cran-pkgbuild.
794s Preparing to unpack .../332-r-cran-pkgbuild_1.4.6-1_all.deb ...
794s Unpacking r-cran-pkgbuild (1.4.6-1) ...
794s Selecting previously unselected package r-cran-rprojroot.
794s Preparing to unpack .../333-r-cran-rprojroot_2.0.4-2_all.deb ...
794s Unpacking r-cran-rprojroot (2.0.4-2) ...
794s Selecting previously unselected package r-cran-pkgload.
794s Preparing to unpack .../334-r-cran-pkgload_1.4.0-1_all.deb ...
794s Unpacking r-cran-pkgload (1.4.0-1) ...
794s Selecting previously unselected package r-cran-praise.
794s Preparing to unpack .../335-r-cran-praise_1.0.0-4build1_all.deb ...
794s Unpacking r-cran-praise (1.0.0-4build1) ...
794s Selecting previously unselected package r-cran-waldo.
794s Preparing to unpack .../336-r-cran-waldo_0.6.1-2_all.deb ...
794s Unpacking r-cran-waldo (0.6.1-2) ...
794s Selecting previously unselected package r-cran-testthat.
794s Preparing to unpack .../337-r-cran-testthat_3.2.3-1_s390x.deb ...
794s Unpacking r-cran-testthat (3.2.3-1) ...
794s Setting up libjs-json (0~20221030+~1.0.8-1) ...
794s Setting up javascript-common (12) ...
794s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
794s Setting up libpixman-1-0:s390x (0.44.0-3) ...
794s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
794s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
794s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
794s Setting up libxpm4:s390x (1:3.5.17-1build2) ...
794s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
794s Setting up libxi6:s390x (2:1.8.2-1) ...
794s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
794s Setting up libdatrie1:s390x (0.2.13-3build1) ...
794s Setting up libjs-popper.js (1.16.1+ds-6) ...
794s Setting up libxcb-render0:s390x (1.17.0-2) ...
794s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
794s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
794s Setting up libjs-lunr (2.3.9~dfsg-2) ...
794s Setting up unzip (6.0-28ubuntu6) ...
794s Setting up liblatex-tounicode-perl (0.55-1) ...
794s Setting up x11-common (1:7.7+23ubuntu3) ...
795s Setting up node-html5shiv (3.7.3+dfsg-5) ...
795s Setting up libdeflate0:s390x (1.23-1) ...
795s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
795s Setting up libxcb-shm0:s390x (1.17.0-2) ...
795s Setting up libreadline-dev:s390x (8.2-6) ...
795s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
795s Setting up libjs-modernizr (3.13.0-0.1) ...
795s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
795s Setting up libpcre2-16-0:s390x (10.45-1) ...
795s Setting up libjs-es5-shim (4.6.7-2) ...
795s Setting up tex-common (6.19) ...
795s update-language: texlive-base not installed and configured, doing nothing!
795s Setting up libio-string-perl (1.08-4) ...
795s Setting up zip (3.0-14ubuntu2) ...
795s Setting up libpcre2-32-0:s390x (10.45-1) ...
795s Setting up libblas3:s390x (3.12.1-2) ...
795s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
795s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
795s Setting up libpkgconf3:s390x (1.8.1-4) ...
795s Setting up libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ...
795s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
795s Setting up libteckit0:s390x (2.5.12+ds1-1) ...
795s Setting up t1utils (1.41-4build3) ...
795s Setting up libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ...
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795s Setting up libmpc3:s390x (1.3.1-1build2) ...
795s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
795s Setting up libmpfi0:s390x (1.5.4+ds-4) ...
795s Setting up icu-devtools (76.1-1ubuntu2) ...
795s Setting up fonts-dejavu-core (2.37-8) ...
795s Setting up pkgconf-bin (1.8.1-4) ...
795s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
795s Setting up libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
795s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
795s Setting up libwebp7:s390x (1.5.0-0.1) ...
795s Setting up liblzma-dev:s390x (5.6.4-1) ...
795s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
795s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
795s Setting up libpcre2-posix3:s390x (10.45-1) ...
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795s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
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795s Setting up libxss1:s390x (1:1.2.3-1build3) ...
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795s Setting up pandoc-data (3.1.11.1-3build1) ...
795s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
795s Setting up libisl23:s390x (0.27-1) ...
795s Setting up libdeflate-dev:s390x (1.23-1) ...
795s Setting up node-normalize.css (8.0.1-5) ...
795s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
795s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
795s Setting up xdg-utils (1.2.1-2ubuntu1) ...
795s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
795s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
795s Setting up libblas-dev:s390x (3.12.1-2) ...
795s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
795s Setting up dctrl-tools (2.24-3build3) ...
795s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
795s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
795s Setting up libsynctex2:s390x (2024.20240313.70630+ds-5build2) ...
795s Setting up libbz2-dev:s390x (1.0.8-6) ...
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795s Setting up libpotrace0:s390x (1.16-2build1) ...
795s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
795s Setting up libice6:s390x (2:1.1.1-1) ...
795s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
795s Setting up liblapack3:s390x (3.12.1-2) ...
795s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
795s Setting up libpcre2-dev:s390x (10.45-1) ...
795s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
795s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
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795s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
795s Setting up pkgconf:s390x (1.8.1-4) ...
795s Setting up libthai0:s390x (0.1.29-2build1) ...
795s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
795s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
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795s Setting up liblapack-dev:s390x (3.12.1-2) ...
795s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
795s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
795s Setting up cpp-14 (14.2.0-17ubuntu3) ...
795s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
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795s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
795s Setting up libsm6:s390x (2:1.2.4-1) ...
795s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
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797s Setting up libxft2:s390x (2.3.6-1build1) ...
797s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
797s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
797s Setting up libtk8.6:s390x (8.6.16-1) ...
797s Setting up libpango-1.0-0:s390x (1.56.1-1) ...
797s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
797s Setting up libcairo2:s390x (1.18.2-2) ...
797s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
797s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
797s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
797s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
797s Setting up cpp (4:14.2.0-1ubuntu1) ...
797s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
797s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ...
797s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ...
797s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
797s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
797s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
797s Setting up libxaw7:s390x (2:1.0.16-1) ...
797s Setting up gcc-14 (14.2.0-17ubuntu3) ...
797s Setting up r-base-core (4.4.3-1) ...
797s Creating config file /etc/R/Renviron with new version
797s Setting up r-cran-crayon (1.5.3-1) ...
797s Setting up r-cran-labeling (0.4.3-1) ...
797s Setting up r-cran-sourcetools (0.1.7-1-1) ...
797s Setting up r-cran-futile.options (1.0.1-3build1) ...
797s Setting up r-cran-lattice (0.22-6-1) ...
797s Setting up r-cran-ps (1.9.0-1) ...
797s Setting up r-cran-nlme (3.1.167-1) ...
797s Setting up r-cran-farver (2.1.2-1) ...
797s Setting up r-cran-formatr (1.14-2) ...
797s Setting up r-cran-formula (1.2-5-1) ...
797s Setting up r-cran-xml (3.99-0.18-1) ...
797s Setting up r-cran-viridislite (0.4.2-2) ...
797s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
797s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
797s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
797s Setting up r-cran-cluster (2.1.8-1) ...
797s Setting up r-cran-nnet (7.3-20-1) ...
797s Setting up r-cran-lazyeval (0.2.2-1build1) ...
797s Setting up r-cran-clipr (0.8.0-1) ...
797s Setting up r-cran-commonmark (1.9.2-2) ...
797s Setting up g++-14 (14.2.0-17ubuntu3) ...
797s Setting up r-cran-rjson (0.2.23-1) ...
797s Setting up r-cran-r6 (2.6.1-1) ...
797s Setting up r-cran-pkgkitten (0.2.4-1) ...
797s Setting up r-cran-jpeg (0.1-10-1) ...
797s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
797s Setting up r-cran-chron (2.3-62-1) ...
797s Setting up texlive-base (2024.20250114-1) ...
797s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
798s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
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798s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
798s Setting up r-cran-magrittr (2.0.3-1) ...
798s Setting up r-cran-rappdirs (0.3.3-1) ...
798s Setting up r-cran-filelock (1.0.3-1) ...
798s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
798s Setting up r-cran-littler (0.3.20-2) ...
798s Setting up r-cran-bh (1.84.0-1) ...
798s Setting up r-cran-fs (1.6.5+dfsg-1) ...
798s Setting up r-cran-rcpp (1.0.14-1) ...
798s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
798s Setting up r-cran-codetools (0.2-20-1) ...
798s Setting up r-cran-brio (1.1.5-1) ...
798s Setting up r-cran-diffobj (0.3.5-1) ...
798s Setting up r-bioc-biocgenerics (0.52.0-2) ...
798s Setting up r-cran-rlang (1.1.5-1) ...
798s Setting up r-cran-matrixstats (1.5.0-1) ...
798s Setting up littler (0.3.20-2) ...
798s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
798s Setting up r-cran-pracma (2.4.4-3) ...
798s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
798s Setting up r-cran-xfun (0.51+dfsg-1) ...
798s Setting up r-cran-sys (3.4.3-1) ...
798s Setting up r-cran-plogr (0.2.0-3build1) ...
798s Setting up r-cran-withr (3.0.2+dfsg-1) ...
798s Setting up r-cran-backports (1.5.0-2) ...
798s Setting up r-cran-processx (3.8.6-1) ...
798s Setting up r-cran-mime (0.12-2) ...
798s Setting up r-cran-praise (1.0.0-4build1) ...
798s Setting up r-cran-generics (0.1.3-1) ...
798s Setting up r-cran-base64enc (0.1-3-3) ...
798s Setting up r-cran-abind (1.4-8-1) ...
798s Setting up r-cran-digest (0.6.37-1) ...
798s Setting up r-cran-yaml (2.3.10-1) ...
798s Setting up r-cran-lambda.r (1.2.4-2build1) ...
798s Setting up r-bioc-protgenerics (1.38.0-2) ...
798s Setting up r-cran-evaluate (1.0.3-1) ...
798s Setting up r-cran-dbi (1.2.3-1) ...
798s Setting up r-cran-highr (0.11+dfsg-1) ...
798s Setting up r-cran-prettyunits (1.2.0-1) ...
798s Setting up r-cran-fansi (1.0.5-1) ...
798s Setting up r-cran-mass (7.3-64-1) ...
798s Setting up r-cran-checkmate (2.3.2-1) ...
798s Setting up r-cran-acepack (1.6.1-1) ...
798s Setting up r-cran-snow (1:0.4.4-2) ...
798s Setting up r-cran-data.table (1.17.0+dfsg-1) ...
798s Setting up r-cran-glue (1.8.0-1) ...
798s Setting up r-cran-foreign (0.8.88-1) ...
798s Setting up r-cran-bit (4.6.0+dfsg-1) ...
798s Setting up r-cran-xtable (1:1.8-4-2) ...
798s Setting up r-cran-cli (3.6.4-1) ...
798s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
798s Setting up r-cran-bitops (1.0-9-1) ...
798s Setting up r-bioc-biocversion (3.20.0-2) ...
798s Setting up r-cran-rprojroot (2.0.4-2) ...
798s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
798s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
798s Setting up gcc (4:14.2.0-1ubuntu1) ...
798s Setting up r-cran-dichromat (1:2.0-0.1-1) ...
798s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
798s Setting up r-cran-deldir (2.0-4-1build1) ...
798s Setting up r-cran-askpass (1.2.1-1) ...
798s Setting up r-cran-fastmap (1.2.0-1) ...
798s Setting up r-cran-png (0.1-8-1build2) ...
798s Setting up r-cran-r.methodss3 (1.8.2-1) ...
798s Setting up r-bioc-biobase (2.66.0-2) ...
798s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
798s Setting up r-cran-rstudioapi (0.17.1-1) ...
798s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
798s Setting up r-cran-utf8 (1.2.4-1) ...
798s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
798s Setting up r-cran-stringi (1.8.4-1build1) ...
798s Setting up texlive-latex-base (2024.20250114-1) ...
798s Setting up r-cran-cpp11 (0.5.2-1) ...
798s Setting up r-cran-plyr (1.8.9-1) ...
798s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
798s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
798s Setting up r-cran-isoband (0.2.7-1) ...
798s Setting up r-cran-futile.logger (1.4.3-4build1) ...
798s Setting up r-cran-waldo (0.6.1-2) ...
798s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
798s Setting up r-cran-later (1.4.1+dfsg-1) ...
798s Setting up r-cran-matrix (1.7-3-1) ...
798s Setting up r-cran-htmltools (0.5.8.1-1) ...
798s Setting up r-cran-tinytex (0.56-1) ...
798s Setting up r-cran-knitr (1.49+dfsg-1) ...
798s Setting up r-cran-mgcv (1.9-1-1) ...
798s Setting up g++ (4:14.2.0-1ubuntu1) ...
798s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
798s Setting up r-cran-powerlaw (1.0.0-1) ...
798s Setting up r-cran-cachem (1.1.0-1) ...
798s Setting up r-cran-sass (0.4.9+dfsg-1) ...
798s Setting up build-essential (12.10ubuntu1) ...
798s Setting up r-bioc-iranges (2.40.1-2) ...
798s Setting up r-cran-tzdb (0.4.0-2) ...
798s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
798s Setting up r-cran-restfulr (0.0.15-1) ...
798s Setting up r-cran-vctrs (0.6.5-1) ...
798s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
798s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
798s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
798s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
798s Setting up r-cran-stringr (1.5.1-1) ...
798s Setting up r-bioc-biocparallel (1.40.0-2) ...
798s Setting up r-cran-callr (3.7.6-1) ...
798s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
798s Setting up r-cran-desc (1.4.3-1) ...
798s Setting up r-cran-xml2 (1.3.7-1) ...
798s Setting up r-cran-munsell (0.5.1-1) ...
798s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
798s Setting up r-cran-fontawesome (0.5.3-1) ...
798s Setting up r-cran-survival (3.8-3-1) ...
798s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
798s Setting up r-cran-r.oo (1.27.0-1) ...
798s Setting up gfortran (4:14.2.0-1ubuntu1) ...
798s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
798s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
798s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
798s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
798s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
798s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
798s Setting up texlive-bibtex-extra (2024.20250114-1) ...
798s Setting up r-cran-reshape2 (1.4.4-2build1) ...
798s Setting up r-cran-interp (1.1-6-1) ...
798s Setting up r-cran-httr2 (1.1.1-1) ...
798s Setting up r-cran-httr (1.4.7+dfsg-1) ...
798s Setting up r-cran-gridextra (2.3-3build1) ...
798s Setting up r-cran-hms (1.1.3-1) ...
798s Setting up r-cran-scales (1.3.0-1) ...
798s Setting up r-cran-memoise (2.0.1-1) ...
798s Setting up r-cran-promises (1.3.2+dfsg-1) ...
798s Setting up r-cran-purrr (1.0.4-1) ...
798s Setting up r-cran-blob (1.2.4-1) ...
798s Setting up r-bioc-xvector (0.46.0-2) ...
798s Setting up r-cran-pkgbuild (1.4.6-1) ...
798s Setting up r-cran-dplyr (1.1.4-4) ...
798s Setting up r-cran-rsqlite (2.3.9-1) ...
798s Setting up r-cran-progress (1.2.3-1) ...
798s Setting up r-cran-pkgload (1.4.0-1) ...
798s Setting up r-cran-r.utils (2.13.0-1) ...
798s Setting up r-cran-vroom (1.6.5-1) ...
798s Setting up r-base-dev (4.4.3-1) ...
798s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
798s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
798s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
798s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
798s Setting up r-cran-rpart (4.1.24-1) ...
798s Setting up r-cran-latticeextra (0.6-30-1) ...
798s Setting up r-cran-viridis (0.6.5-1) ...
798s Setting up r-cran-testthat (3.2.3-1) ...
798s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
798s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
798s Setting up r-cran-readr (2.1.5-1) ...
798s Setting up r-cran-tidyr (1.3.1-1) ...
798s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
798s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ...
798s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
798s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
798s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
798s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
798s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ...
798s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
798s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
798s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
798s Setting up r-cran-bookdown (0.42+dfsg-1) ...
798s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
798s Setting up r-bioc-pwalign (1.2.0-2) ...
798s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
798s Setting up r-bioc-annotationdbi (1.68.0-2) ...
798s Setting up r-bioc-go.db (3.20.0-2) ...
798s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
798s Setting up r-bioc-annotate (1.84.0+dfsg-2) ...
798s Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
798s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
798s Setting up r-bioc-genomicalignments (1.42.0-2) ...
798s Setting up r-bioc-rtracklayer (1.66.0-2) ...
798s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
798s Setting up r-cran-htmltable (2.4.3-1) ...
798s Setting up r-bioc-cner (1.42.0+dfsg-2) ...
798s Setting up r-bioc-bsgenome (1.74.0-2) ...
798s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ...
798s Setting up r-cran-hmisc (5.2-2-1) ...
798s Setting up r-bioc-variantannotation (1.52.0-2) ...
798s Setting up r-bioc-biovizbase (1.54.0-2) ...
798s Setting up r-bioc-gviz (1.50.0+dfsg-2) ...
798s Processing triggers for libc-bin (2.41-1ubuntu2) ...
798s Processing triggers for man-db (2.13.0-1) ...
799s Processing triggers for install-info (7.1.1-1) ...
799s Processing triggers for tex-common (6.19) ...
800s Running updmap-sys. This may take some time... done.
800s Running mktexlsr /var/lib/texmf ... done.
800s Building format(s) --all.
839s 	This may take some time... done.
840s autopkgtest [11:47:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
840s autopkgtest [11:47:37]: test pkg-r-autopkgtest: [-----------------------
840s Test: Try to load the R library CNEr
840s 
840s R version 4.4.3 (2025-02-28) -- "Trophy Case"
840s Copyright (C) 2025 The R Foundation for Statistical Computing
840s Platform: s390x-ibm-linux-gnu
840s 
840s R is free software and comes with ABSOLUTELY NO WARRANTY.
840s You are welcome to redistribute it under certain conditions.
840s Type 'license()' or 'licence()' for distribution details.
840s 
840s R is a collaborative project with many contributors.
840s Type 'contributors()' for more information and
840s 'citation()' on how to cite R or R packages in publications.
840s 
840s Type 'demo()' for some demos, 'help()' for on-line help, or
840s 'help.start()' for an HTML browser interface to help.
840s Type 'q()' to quit R.
840s 
840s > library('CNEr')
848s 
849s > 
849s > 
849s Other tests are currently unsupported!
849s They will be progressively added.
849s autopkgtest [11:47:46]: test pkg-r-autopkgtest: -----------------------]
850s pkg-r-autopkgtest    PASS
850s autopkgtest [11:47:47]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
850s autopkgtest [11:47:47]: @@@@@@@@@@@@@@@@@@@@ summary
850s pkg-r-autopkgtest    PASS
862s nova [W] Using flock in prodstack6-s390x
862s Creating nova instance adt-plucky-s390x-r-bioc-cner-20250315-113337-juju-7f2275-prod-proposed-migration-environment-20-6217dc2c-6960-4cab-8a97-27e229578983 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
862s nova [W] Timed out waiting for 69ad114b-5cfd-4105-8875-1f3e57610207 to get deleted.