0s autopkgtest [17:40:56]: starting date and time: 2025-03-15 17:40:56+0000 0s autopkgtest [17:40:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:40:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.esw4oqnd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-biobase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-23.secgroup --name adt-plucky-s390x-r-bioc-biobase-20250315-174056-juju-7f2275-prod-proposed-migration-environment-2-8368d3e7-efa1-4e04-a242-4f2a828dfd92 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 139s autopkgtest [17:43:15]: testbed dpkg architecture: s390x 140s autopkgtest [17:43:16]: testbed apt version: 2.9.33 140s autopkgtest [17:43:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 140s autopkgtest [17:43:16]: testbed release detected to be: None 141s autopkgtest [17:43:17]: updating testbed package index (apt update) 141s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 141s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 142s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 142s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 142s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 142s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 142s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 142s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 142s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 142s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 142s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 142s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 142s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 142s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 142s Fetched 1073 kB in 1s (978 kB/s) 143s Reading package lists... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Calculating upgrade... 144s Calculating upgrade... 144s The following packages were automatically installed and are no longer required: 144s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 144s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 144s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 144s linux-tools-6.11.0-8-generic 144s Use 'sudo apt autoremove' to remove them. 144s The following packages will be upgraded: 144s pinentry-curses python3-jinja2 strace 144s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 652 kB of archives. 144s After this operation, 27.6 kB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 145s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 145s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 145s Fetched 652 kB in 1s (833 kB/s) 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 145s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 145s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 145s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 145s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 145s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 145s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 145s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 145s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 145s Setting up strace (6.13+ds-1ubuntu1) ... 145s Processing triggers for man-db (2.13.0-1) ... 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Solving dependencies... 146s The following packages will be REMOVED: 146s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 146s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 146s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 146s linux-tools-6.11.0-8-generic* 147s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 147s After this operation, 167 MB disk space will be freed. 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 147s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 147s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 147s Removing libpython3.12t64:s390x (3.12.9-1) ... 147s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 147s Removing libnsl2:s390x (1.3.0-3build3) ... 147s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 147s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 147s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 148s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 148s Processing triggers for libc-bin (2.41-1ubuntu1) ... 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 148s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 148s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 148s autopkgtest [17:43:24]: upgrading testbed (apt dist-upgrade and autopurge) 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 149s Entering ResolveByKeep 149s 149s Calculating upgrade... 149s The following packages will be upgraded: 149s libc-bin libc-dev-bin libc6 libc6-dev locales 149s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Need to get 9512 kB of archives. 149s After this operation, 8192 B of additional disk space will be used. 149s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 150s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 151s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 152s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 152s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 155s Preconfiguring packages ... 155s Fetched 9512 kB in 5s (1754 kB/s) 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 155s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Setting up libc6:s390x (2.41-1ubuntu2) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 155s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Setting up libc-bin (2.41-1ubuntu2) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 155s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 155s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 156s Setting up locales (2.41-1ubuntu2) ... 156s Generating locales (this might take a while)... 157s en_US.UTF-8... done 157s Generation complete. 157s Setting up libc-dev-bin (2.41-1ubuntu2) ... 157s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 157s Processing triggers for man-db (2.13.0-1) ... 158s Processing triggers for systemd (257.3-1ubuntu3) ... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 159s Solving dependencies... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s autopkgtest [17:43:35]: rebooting testbed after setup commands that affected boot 180s autopkgtest [17:43:56]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 182s autopkgtest [17:43:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biobase 185s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (dsc) [2083 B] 185s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (tar) [1979 kB] 185s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-biobase 2.66.0-2 (diff) [8488 B] 185s gpgv: Signature made Sat Jan 11 19:34:54 2025 UTC 185s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 185s gpgv: issuer "crusoe@debian.org" 185s gpgv: Can't check signature: No public key 185s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biobase_2.66.0-2.dsc: no acceptable signature found 185s autopkgtest [17:44:01]: testing package r-bioc-biobase version 2.66.0-2 186s autopkgtest [17:44:02]: build not needed 189s autopkgtest [17:44:05]: test pkg-r-autopkgtest: preparing testbed 189s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Starting pkgProblemResolver with broken count: 0 189s Starting 2 pkgProblemResolver with broken count: 0 189s Done 190s The following NEW packages will be installed: 190s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 190s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 190s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 190s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 190s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 190s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 190s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 190s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 190s libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev libgfortran5 190s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl 190s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 190s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 190s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 190s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 190s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 190s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 190s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0 190s liblzma-dev libmpc3 libmpfi0 libncurses-dev libpango-1.0-0 190s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 190s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 190s libpng-dev libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 190s libstdc++-14-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 190s libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7 190s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 190s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 190s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 190s r-base-core r-base-dev r-bioc-all r-bioc-biobase r-bioc-biocgenerics 190s r-bioc-biocstyle r-bioc-biocversion r-bioc-golubesets r-bioc-limma 190s r-cran-base64enc r-cran-biocmanager r-cran-bookdown r-cran-bslib 190s r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-digest 190s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 190s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 190s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr 190s r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 190s r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-runit 190s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-statmod r-cran-tinytex 190s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common 190s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 190s x11-common xdg-utils zip zlib1g-dev 190s 0 upgraded, 196 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 351 MB of archives. 190s After this operation, 1141 MB of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 191s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 191s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 196s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 196s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 196s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 196s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 196s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 196s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 196s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 198s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 199s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 200s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 206s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 207s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 207s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 207s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 208s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 211s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 211s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 211s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 211s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 211s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 211s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 211s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 211s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 211s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 211s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 211s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 211s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 211s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 211s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB] 212s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 212s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 212s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 212s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 212s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 212s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 212s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 212s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 212s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B] 212s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB] 212s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB] 212s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 212s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 212s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 212s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 212s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 212s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 212s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 212s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 212s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 213s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 213s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 213s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 213s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 213s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 213s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 213s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 213s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 213s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 213s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 213s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 213s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 213s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 213s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 213s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 213s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 213s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 213s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 213s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 213s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 213s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 213s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 213s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 213s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 213s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 213s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 213s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 213s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 213s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB] 213s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 214s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 214s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 214s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB] 214s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 214s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 214s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 214s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 214s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 214s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 214s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 214s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 214s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 214s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 214s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 214s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 214s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 214s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 214s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 214s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB] 214s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB] 215s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 215s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 215s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 215s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB] 215s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 215s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB] 215s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB] 215s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 215s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 215s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 215s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 215s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 215s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 215s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 215s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 215s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB] 215s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB] 215s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 215s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB] 215s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 215s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 215s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 215s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 218s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 218s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 218s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 218s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 218s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 218s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 218s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 221s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 221s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 221s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 221s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 221s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 221s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 221s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 221s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 221s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-all all 1.48.0-2 [11.5 MB] 222s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 222s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 222s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 222s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 222s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 222s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 222s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 222s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 222s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 222s Get:151 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 222s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 222s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 222s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 222s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 222s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 222s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 222s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 222s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 222s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 222s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 222s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 222s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 222s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 222s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 222s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB] 222s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB] 223s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 223s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 223s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 223s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 223s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 223s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 223s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 223s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 223s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 223s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 223s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 223s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 223s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 223s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 223s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 223s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 223s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 223s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB] 223s Get:186 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB] 223s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB] 224s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB] 226s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB] 226s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 235s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB] 235s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 235s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-golubesets all 1.48.0-2 [4524 kB] 235s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 235s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB] 236s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB] 236s Preconfiguring packages ... 236s Fetched 351 MB in 46s (7648 kB/s) 236s Selecting previously unselected package libisl23:s390x. 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 236s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 236s Unpacking libisl23:s390x (0.27-1) ... 236s Selecting previously unselected package libmpc3:s390x. 236s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 236s Unpacking libmpc3:s390x (1.3.1-1build2) ... 236s Selecting previously unselected package cpp-14-s390x-linux-gnu. 236s Preparing to unpack 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libfreetype6:s390x. 237s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 237s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 237s Selecting previously unselected package fonts-dejavu-mono. 237s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 237s Unpacking fonts-dejavu-mono (2.37-8) ... 238s Selecting previously unselected package fonts-dejavu-core. 238s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 238s Unpacking fonts-dejavu-core (2.37-8) ... 238s Selecting previously unselected package fontconfig-config. 238s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 238s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 238s Selecting previously unselected package libfontconfig1:s390x. 238s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 238s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 238s Selecting previously unselected package fontconfig. 238s Preparing to unpack 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previously unselected package gfortran. 238s Preparing to unpack .../038-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 238s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 238s Selecting previously unselected package icu-devtools. 238s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_s390x.deb ... 238s Unpacking icu-devtools (76.1-1ubuntu2) ... 238s Selecting previously unselected package javascript-common. 238s Preparing to unpack .../040-javascript-common_12_all.deb ... 238s Unpacking javascript-common (12) ... 238s Selecting previously unselected package libio-string-perl. 238s Preparing to unpack .../041-libio-string-perl_1.08-4_all.deb ... 238s Unpacking libio-string-perl (1.08-4) ... 238s Selecting previously unselected package liblatex-tounicode-perl. 238s Preparing to unpack .../042-liblatex-tounicode-perl_0.55-1_all.deb ... 238s Unpacking liblatex-tounicode-perl (0.55-1) ... 238s Selecting previously unselected package libbibtex-parser-perl. 238s Preparing to unpack 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package libkpathsea6:s390x. 239s Preparing to unpack .../080-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ... 239s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ... 239s Selecting previously unselected package liblapack3:s390x. 239s Preparing to unpack .../081-liblapack3_3.12.1-2_s390x.deb ... 239s Unpacking liblapack3:s390x (3.12.1-2) ... 239s Selecting previously unselected package liblapack-dev:s390x. 239s Preparing to unpack .../082-liblapack-dev_3.12.1-2_s390x.deb ... 239s Unpacking liblapack-dev:s390x (3.12.1-2) ... 239s Selecting previously unselected package liblua5.4-0:s390x. 239s Preparing to unpack .../083-liblua5.4-0_5.4.7-1_s390x.deb ... 239s Unpacking liblua5.4-0:s390x (5.4.7-1) ... 239s Selecting previously unselected package libmpfi0:s390x. 239s Preparing to unpack .../084-libmpfi0_1.5.4+ds-4_s390x.deb ... 239s Unpacking libmpfi0:s390x (1.5.4+ds-4) ... 239s Selecting previously unselected package libncurses-dev:s390x. 239s Preparing to unpack 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libpcre2-posix3:s390x (10.45-1) ... 239s Selecting previously unselected package libpcre2-dev:s390x. 239s Preparing to unpack .../096-libpcre2-dev_10.45-1_s390x.deb ... 239s Unpacking libpcre2-dev:s390x (10.45-1) ... 239s Selecting previously unselected package libpkgconf3:s390x. 239s Preparing to unpack .../097-libpkgconf3_1.8.1-4_s390x.deb ... 239s Unpacking libpkgconf3:s390x (1.8.1-4) ... 239s Selecting previously unselected package zlib1g-dev:s390x. 239s Preparing to unpack .../098-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 239s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 240s Selecting previously unselected package libpng-dev:s390x. 240s Preparing to unpack .../099-libpng-dev_1.6.47-1_s390x.deb ... 240s Unpacking libpng-dev:s390x (1.6.47-1) ... 240s Selecting previously unselected package libpotrace0:s390x. 240s Preparing to unpack .../100-libpotrace0_1.16-2build1_s390x.deb ... 240s Unpacking libpotrace0:s390x (1.16-2build1) ... 240s Selecting previously unselected package libptexenc1:s390x. 240s Preparing to unpack .../101-libptexenc1_2024.20240313.70630+ds-5build2_s390x.deb ... 240s Unpacking libptexenc1:s390x (2024.20240313.70630+ds-5build2) ... 240s Selecting previously unselected package libreadline-dev:s390x. 240s Preparing to unpack .../102-libreadline-dev_8.2-6_s390x.deb ... 240s Unpacking libreadline-dev:s390x (8.2-6) ... 240s Selecting previously unselected package libsharpyuv0:s390x. 240s Preparing to unpack .../103-libsharpyuv0_1.5.0-0.1_s390x.deb ... 240s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 240s Selecting previously unselected package libsm6:s390x. 240s Preparing to unpack .../104-libsm6_2%3a1.2.4-1_s390x.deb ... 240s Unpacking libsm6:s390x (2:1.2.4-1) ... 240s Selecting previously unselected package libsynctex2:s390x. 240s Preparing to unpack .../105-libsynctex2_2024.20240313.70630+ds-5build2_s390x.deb ... 240s Unpacking libsynctex2:s390x (2024.20240313.70630+ds-5build2) ... 240s Selecting previously unselected package libtcl8.6:s390x. 240s Preparing to unpack .../106-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 240s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 240s Selecting previously unselected package libteckit0:s390x. 240s Preparing to unpack .../107-libteckit0_2.5.12+ds1-1_s390x.deb ... 240s Unpacking libteckit0:s390x (2.5.12+ds1-1) ... 240s Selecting previously unselected package libtexlua53-5:s390x. 240s Preparing to unpack .../108-libtexlua53-5_2024.20240313.70630+ds-5build2_s390x.deb ... 240s Unpacking libtexlua53-5:s390x (2024.20240313.70630+ds-5build2) ... 240s Selecting previously unselected package libjbig0:s390x. 240s Preparing to unpack .../109-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 240s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 240s Selecting previously unselected package libwebp7:s390x. 240s Preparing to unpack .../110-libwebp7_1.5.0-0.1_s390x.deb ... 240s Unpacking libwebp7:s390x (1.5.0-0.1) ... 240s Selecting previously unselected package libtiff6:s390x. 240s Preparing to unpack .../111-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 240s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 240s Selecting previously unselected package libxft2:s390x. 240s Preparing to unpack .../112-libxft2_2.3.6-1build1_s390x.deb ... 240s Unpacking libxft2:s390x (2.3.6-1build1) ... 240s Selecting previously unselected package libxss1:s390x. 240s Preparing to unpack .../113-libxss1_1%3a1.2.3-1build3_s390x.deb ... 240s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 240s Selecting previously unselected package libtk8.6:s390x. 240s Preparing to unpack .../114-libtk8.6_8.6.16-1_s390x.deb ... 240s Unpacking libtk8.6:s390x (8.6.16-1) ... 240s Selecting previously unselected package libxt6t64:s390x. 240s Preparing to unpack .../115-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 240s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 240s Selecting previously unselected package libxmu6:s390x. 240s Preparing to unpack .../116-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 240s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 240s Selecting previously unselected package libxpm4:s390x. 240s Preparing to unpack .../117-libxpm4_1%3a3.5.17-1build2_s390x.deb ... 240s Unpacking libxpm4:s390x (1:3.5.17-1build2) ... 240s Selecting previously unselected package libxaw7:s390x. 240s Preparing to unpack .../118-libxaw7_2%3a1.0.16-1_s390x.deb ... 240s Unpacking libxaw7:s390x (2:1.0.16-1) ... 240s Selecting previously unselected package libxi6:s390x. 240s Preparing to unpack .../119-libxi6_2%3a1.8.2-1_s390x.deb ... 240s Unpacking libxi6:s390x (2:1.8.2-1) ... 240s Selecting previously unselected package libzzip-0-13t64:s390x. 240s Preparing to unpack .../120-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ... 240s Unpacking libzzip-0-13t64:s390x (0.13.78+dfsg.1-0.1) ... 240s Selecting previously unselected package zip. 240s Preparing to unpack .../121-zip_3.0-14ubuntu2_s390x.deb ... 240s Unpacking zip (3.0-14ubuntu2) ... 240s Selecting previously unselected package unzip. 240s Preparing to unpack .../122-unzip_6.0-28ubuntu6_s390x.deb ... 240s Unpacking unzip (6.0-28ubuntu6) ... 240s Selecting previously unselected package xdg-utils. 240s Preparing to unpack .../123-xdg-utils_1.2.1-2ubuntu1_all.deb ... 240s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 240s Selecting previously unselected package r-base-core. 240s Preparing to unpack .../124-r-base-core_4.4.3-1_s390x.deb ... 240s Unpacking r-base-core (4.4.3-1) ... 240s Selecting previously unselected package r-cran-littler. 240s Preparing to unpack .../125-r-cran-littler_0.3.20-2_s390x.deb ... 240s Unpacking r-cran-littler (0.3.20-2) ... 240s Selecting previously unselected package littler. 240s Preparing to unpack .../126-littler_0.3.20-2_all.deb ... 240s Unpacking littler (0.3.20-2) ... 240s Selecting previously unselected package node-bootstrap-sass. 240s Preparing to unpack .../127-node-bootstrap-sass_3.4.3-2_all.deb ... 240s Unpacking node-bootstrap-sass (3.4.3-2) ... 240s Selecting previously unselected package node-html5shiv. 240s Preparing to unpack .../128-node-html5shiv_3.7.3+dfsg-5_all.deb ... 240s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 240s Selecting previously unselected package node-normalize.css. 240s Preparing to unpack .../129-node-normalize.css_8.0.1-5_all.deb ... 240s Unpacking node-normalize.css (8.0.1-5) ... 240s Selecting previously unselected package pandoc-data. 240s Preparing to unpack .../130-pandoc-data_3.1.11.1-3build1_all.deb ... 240s Unpacking pandoc-data (3.1.11.1-3build1) ... 240s Selecting previously unselected package pandoc. 240s Preparing to unpack .../131-pandoc_3.1.11.1+ds-2_s390x.deb ... 240s Unpacking pandoc (3.1.11.1+ds-2) ... 242s Selecting previously unselected package liblzma-dev:s390x. 242s Preparing to unpack .../132-liblzma-dev_5.6.4-1_s390x.deb ... 242s Unpacking liblzma-dev:s390x (5.6.4-1) ... 242s Selecting previously unselected package pkgconf-bin. 242s Preparing to unpack .../133-pkgconf-bin_1.8.1-4_s390x.deb ... 242s Unpacking pkgconf-bin (1.8.1-4) ... 242s Selecting previously unselected package pkgconf:s390x. 242s Preparing to unpack .../134-pkgconf_1.8.1-4_s390x.deb ... 242s Unpacking pkgconf:s390x (1.8.1-4) ... 242s Selecting previously unselected package libtirpc-dev:s390x. 242s Preparing to unpack .../135-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 242s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 242s Selecting previously unselected package r-base-dev. 242s Preparing to unpack .../136-r-base-dev_4.4.3-1_all.deb ... 242s Unpacking r-base-dev (4.4.3-1) ... 242s Selecting previously unselected package pkg-r-autopkgtest. 242s Preparing to unpack .../137-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 242s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 242s Selecting previously unselected package r-bioc-biocgenerics. 242s Preparing to unpack .../138-r-bioc-biocgenerics_0.52.0-2_all.deb ... 242s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 242s Selecting previously unselected package r-bioc-biobase. 242s Preparing to unpack .../139-r-bioc-biobase_2.66.0-2_s390x.deb ... 242s Unpacking r-bioc-biobase (2.66.0-2) ... 242s Selecting previously unselected package r-bioc-all. 242s Preparing to unpack .../140-r-bioc-all_1.48.0-2_all.deb ... 242s Unpacking r-bioc-all (1.48.0-2) ... 242s Selecting previously unselected package r-cran-base64enc. 242s Preparing to unpack .../141-r-cran-base64enc_0.1-3-3_s390x.deb ... 242s Unpacking r-cran-base64enc (0.1-3-3) ... 242s Selecting previously unselected package r-cran-digest. 242s Preparing to unpack .../142-r-cran-digest_0.6.37-1_s390x.deb ... 242s Unpacking r-cran-digest (0.6.37-1) ... 242s Selecting previously unselected package r-cran-fastmap. 242s Preparing to unpack .../143-r-cran-fastmap_1.2.0-1_s390x.deb ... 242s Unpacking r-cran-fastmap (1.2.0-1) ... 242s Selecting previously unselected package r-cran-rlang. 242s Preparing to unpack .../144-r-cran-rlang_1.1.5-1_s390x.deb ... 242s Unpacking r-cran-rlang (1.1.5-1) ... 242s Selecting previously unselected package r-cran-htmltools. 242s Preparing to unpack .../145-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 242s Unpacking r-cran-htmltools (0.5.8.1-1) ... 242s Selecting previously unselected package r-cran-evaluate. 242s Preparing to unpack .../146-r-cran-evaluate_1.0.3-1_all.deb ... 242s Unpacking r-cran-evaluate (1.0.3-1) ... 242s Selecting previously unselected package r-cran-xfun. 242s Preparing to unpack .../147-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 242s Unpacking r-cran-xfun (0.51+dfsg-1) ... 242s Selecting previously unselected package r-cran-highr. 242s Preparing to unpack .../148-r-cran-highr_0.11+dfsg-1_all.deb ... 242s Unpacking r-cran-highr (0.11+dfsg-1) ... 242s Selecting previously unselected package r-cran-yaml. 242s Preparing to unpack .../149-r-cran-yaml_2.3.10-1_s390x.deb ... 242s Unpacking r-cran-yaml (2.3.10-1) ... 242s Selecting previously unselected package libjs-mathjax. 242s Preparing to unpack .../150-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 242s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 242s Selecting previously unselected package r-cran-knitr. 242s Preparing to unpack .../151-r-cran-knitr_1.49+dfsg-1_all.deb ... 242s Unpacking r-cran-knitr (1.49+dfsg-1) ... 242s Selecting previously unselected package r-cran-cachem. 242s Preparing to unpack .../152-r-cran-cachem_1.1.0-1_s390x.deb ... 242s Unpacking r-cran-cachem (1.1.0-1) ... 242s Selecting previously unselected package r-cran-jquerylib. 242s Preparing to unpack .../153-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 242s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 242s Selecting previously unselected package r-cran-jsonlite. 242s Preparing to unpack .../154-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 242s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 242s Selecting previously unselected package r-cran-cli. 242s Preparing to unpack .../155-r-cran-cli_3.6.4-1_s390x.deb ... 242s Unpacking r-cran-cli (3.6.4-1) ... 242s Selecting previously unselected package r-cran-glue. 242s Preparing to unpack .../156-r-cran-glue_1.8.0-1_s390x.deb ... 242s Unpacking r-cran-glue (1.8.0-1) ... 242s Selecting previously unselected package r-cran-lifecycle. 242s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 242s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 243s Selecting previously unselected package r-cran-memoise. 243s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 243s Unpacking r-cran-memoise (2.0.1-1) ... 243s Selecting previously unselected package r-cran-mime. 243s Preparing to unpack .../159-r-cran-mime_0.12-2_s390x.deb ... 243s Unpacking r-cran-mime (0.12-2) ... 243s Selecting previously unselected package r-cran-fs. 243s Preparing to unpack .../160-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 243s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 243s Selecting previously unselected package r-cran-r6. 243s Preparing to unpack .../161-r-cran-r6_2.6.1-1_all.deb ... 243s Unpacking r-cran-r6 (2.6.1-1) ... 243s Selecting previously unselected package r-cran-rappdirs. 243s Preparing to unpack .../162-r-cran-rappdirs_0.3.3-1_s390x.deb ... 243s Unpacking r-cran-rappdirs (0.3.3-1) ... 243s Selecting previously unselected package r-cran-sass. 243s Preparing to unpack .../163-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 243s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 243s Selecting previously unselected package r-cran-bslib. 243s Preparing to unpack .../164-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 243s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-fontawesome. 243s Preparing to unpack .../165-r-cran-fontawesome_0.5.3-1_all.deb ... 243s Unpacking r-cran-fontawesome (0.5.3-1) ... 243s Selecting previously unselected package r-cran-tinytex. 243s Preparing to unpack .../166-r-cran-tinytex_0.56-1_all.deb ... 243s Unpacking r-cran-tinytex (0.56-1) ... 243s Selecting previously unselected package libjs-modernizr. 243s Preparing to unpack .../167-libjs-modernizr_3.13.0-0.1_all.deb ... 243s Unpacking libjs-modernizr (3.13.0-0.1) ... 243s Selecting previously unselected package r-cran-pkgkitten. 243s Preparing to unpack .../168-r-cran-pkgkitten_0.2.4-1_all.deb ... 243s Unpacking r-cran-pkgkitten (0.2.4-1) ... 243s Selecting previously unselected package r-cran-rcpp. 243s Preparing to unpack .../169-r-cran-rcpp_1.0.14-1_s390x.deb ... 243s Unpacking r-cran-rcpp (1.0.14-1) ... 243s Selecting previously unselected package r-cran-later. 243s Preparing to unpack .../170-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 243s Unpacking r-cran-later (1.4.1+dfsg-1) ... 243s Selecting previously unselected package r-cran-magrittr. 243s Preparing to unpack .../171-r-cran-magrittr_2.0.3-1_s390x.deb ... 243s Unpacking r-cran-magrittr (2.0.3-1) ... 243s Selecting previously unselected package r-cran-promises. 243s Preparing to unpack .../172-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 243s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 243s Selecting previously unselected package r-cran-httpuv. 243s Preparing to unpack .../173-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 243s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 243s Selecting previously unselected package r-cran-xtable. 243s Preparing to unpack .../174-r-cran-xtable_1%3a1.8-4-2_all.deb ... 243s Unpacking r-cran-xtable (1:1.8-4-2) ... 243s Selecting previously unselected package r-cran-sourcetools. 243s Preparing to unpack .../175-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 243s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 243s Selecting previously unselected package r-cran-crayon. 243s Preparing to unpack .../176-r-cran-crayon_1.5.3-1_all.deb ... 243s Unpacking r-cran-crayon (1.5.3-1) ... 243s Selecting previously unselected package r-cran-withr. 243s Preparing to unpack .../177-r-cran-withr_3.0.2+dfsg-1_all.deb ... 243s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 243s Selecting previously unselected package r-cran-commonmark. 243s Preparing to unpack .../178-r-cran-commonmark_1.9.2-2_s390x.deb ... 243s Unpacking r-cran-commonmark (1.9.2-2) ... 243s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 243s Preparing to unpack .../179-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 243s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 243s Selecting previously unselected package r-cran-shiny. 243s Preparing to unpack .../180-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 243s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 243s Selecting previously unselected package r-cran-rmarkdown. 243s Preparing to unpack .../181-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 243s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 243s Selecting previously unselected package r-cran-bookdown. 243s Preparing to unpack .../182-r-cran-bookdown_0.42+dfsg-1_all.deb ... 243s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 243s Selecting previously unselected package r-cran-biocmanager. 243s Preparing to unpack .../183-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 243s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 243s Selecting previously unselected package tex-common. 243s Preparing to unpack .../184-tex-common_6.19_all.deb ... 243s Unpacking tex-common (6.19) ... 243s Selecting previously unselected package t1utils. 243s Preparing to unpack .../185-t1utils_1.41-4build3_s390x.deb ... 243s Unpacking t1utils (1.41-4build3) ... 243s Selecting previously unselected package texlive-binaries. 243s Preparing to unpack .../186-texlive-binaries_2024.20240313.70630+ds-5build2_s390x.deb ... 243s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 243s Selecting previously unselected package texlive-base. 243s Preparing to unpack .../187-texlive-base_2024.20250114-1_all.deb ... 243s Unpacking texlive-base (2024.20250114-1) ... 245s Selecting previously unselected package texlive-latex-base. 245s Preparing to unpack .../188-texlive-latex-base_2024.20250114-1_all.deb ... 245s Unpacking texlive-latex-base (2024.20250114-1) ... 245s Selecting previously unselected package texlive-bibtex-extra. 245s Preparing to unpack .../189-texlive-bibtex-extra_2024.20250114-1_all.deb ... 245s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 248s Selecting previously unselected package r-bioc-biocversion. 248s Preparing to unpack .../190-r-bioc-biocversion_3.20.0-2_all.deb ... 248s Unpacking r-bioc-biocversion (3.20.0-2) ... 248s Selecting previously unselected package r-bioc-biocstyle. 248s Preparing to unpack .../191-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 248s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 248s Selecting previously unselected package r-bioc-golubesets. 248s Preparing to unpack .../192-r-bioc-golubesets_1.48.0-2_all.deb ... 248s Unpacking r-bioc-golubesets (1.48.0-2) ... 248s Selecting previously unselected package r-cran-statmod. 248s Preparing to unpack .../193-r-cran-statmod_1.5.0-1_s390x.deb ... 248s Unpacking r-cran-statmod (1.5.0-1) ... 248s Selecting previously unselected package r-bioc-limma. 248s Preparing to unpack .../194-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ... 248s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 248s Selecting previously unselected package r-cran-runit. 248s Preparing to unpack .../195-r-cran-runit_0.4.33-1_all.deb ... 248s Unpacking r-cran-runit (0.4.33-1) ... 248s Setting up libjs-json (0~20221030+~1.0.8-1) ... 248s Setting up javascript-common (12) ... 248s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 248s Setting up libpixman-1-0:s390x (0.44.0-3) ... 248s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 248s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 248s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 248s Setting up libxpm4:s390x (1:3.5.17-1build2) ... 248s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 248s Setting up libxi6:s390x (2:1.8.2-1) ... 248s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 248s Setting up libdatrie1:s390x (0.2.13-3build1) ... 248s Setting up libjs-popper.js (1.16.1+ds-6) ... 248s Setting up libxcb-render0:s390x (1.17.0-2) ... 248s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 248s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 248s Setting up libjs-lunr (2.3.9~dfsg-2) ... 248s Setting up unzip (6.0-28ubuntu6) ... 248s Setting up liblatex-tounicode-perl (0.55-1) ... 248s Setting up x11-common (1:7.7+23ubuntu3) ... 248s Setting up node-html5shiv (3.7.3+dfsg-5) ... 248s Setting up libdeflate0:s390x (1.23-1) ... 248s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 248s Setting up libxcb-shm0:s390x (1.17.0-2) ... 248s Setting up libreadline-dev:s390x (8.2-6) ... 248s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 248s Setting up libjs-modernizr (3.13.0-0.1) ... 248s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 248s Setting up libpcre2-16-0:s390x (10.45-1) ... 248s Setting up libjs-es5-shim (4.6.7-2) ... 248s Setting up tex-common (6.19) ... 248s update-language: texlive-base not installed and configured, doing nothing! 248s Setting up libio-string-perl (1.08-4) ... 248s Setting up zip 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libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 249s Setting up fontconfig (2.15.0-2ubuntu1) ... 251s Regenerating fonts cache... done. 251s Setting up libxft2:s390x (2.3.6-1build1) ... 251s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 251s Setting up libtk8.6:s390x (8.6.16-1) ... 251s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 251s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 251s Setting up libcairo2:s390x (1.18.2-2) ... 251s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 251s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 251s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 251s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 251s Setting up cpp (4:14.2.0-1ubuntu1) ... 251s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 251s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 251s Setting up libxmu6:s390x (2:1.1.3-3build2) ... 251s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 251s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 251s Setting up libxaw7:s390x (2:1.0.16-1) ... 251s Setting up gcc-14 (14.2.0-17ubuntu3) ... 251s Setting up r-base-core (4.4.3-1) ... 251s Creating config file /etc/R/Renviron with new version 251s Setting up r-cran-crayon (1.5.3-1) ... 251s Setting up r-cran-sourcetools (0.1.7-1-1) ... 251s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ... 251s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 251s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 251s Setting up r-cran-statmod (1.5.0-1) ... 251s Setting up r-cran-commonmark (1.9.2-2) ... 251s Setting up g++-14 (14.2.0-17ubuntu3) ... 251s Setting up r-cran-r6 (2.6.1-1) ... 251s Setting up r-cran-pkgkitten (0.2.4-1) ... 251s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 251s Setting up texlive-base (2024.20250114-1) ... 251s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 251s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 252s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 252s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 252s Setting up r-cran-magrittr (2.0.3-1) ... 252s Setting up r-cran-rappdirs (0.3.3-1) ... 252s Setting up r-cran-littler (0.3.20-2) ... 252s Setting up r-cran-fs (1.6.5+dfsg-1) ... 252s Setting up r-cran-rcpp (1.0.14-1) ... 252s Setting up r-bioc-biocgenerics (0.52.0-2) ... 252s Setting up r-cran-rlang (1.1.5-1) ... 252s Setting up littler (0.3.20-2) ... 252s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 252s Setting up r-cran-xfun (0.51+dfsg-1) ... 252s Setting up r-cran-withr (3.0.2+dfsg-1) ... 252s Setting up r-cran-mime (0.12-2) ... 252s Setting up r-cran-base64enc (0.1-3-3) ... 252s Setting up r-cran-digest (0.6.37-1) ... 252s Setting up r-cran-yaml (2.3.10-1) ... 252s Setting up r-cran-evaluate (1.0.3-1) ... 252s Setting up r-cran-highr (0.11+dfsg-1) ... 252s Setting up r-cran-glue (1.8.0-1) ... 252s Setting up r-cran-xtable (1:1.8-4-2) ... 252s Setting up r-cran-cli (3.6.4-1) ... 252s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 252s Setting up r-bioc-biocversion (3.20.0-2) ... 252s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 252s Setting up gcc (4:14.2.0-1ubuntu1) ... 252s Setting up r-cran-fastmap (1.2.0-1) ... 252s Setting up r-bioc-biobase (2.66.0-2) ... 252s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 252s Setting up texlive-latex-base (2024.20250114-1) ... 252s Setting up r-cran-runit (0.4.33-1) ... 252s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 252s Setting up r-cran-later (1.4.1+dfsg-1) ... 252s Setting up r-cran-htmltools (0.5.8.1-1) ... 252s Setting up r-cran-tinytex (0.56-1) ... 252s Setting up r-cran-knitr (1.49+dfsg-1) ... 252s Setting up g++ (4:14.2.0-1ubuntu1) ... 252s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 252s Setting up r-cran-cachem (1.1.0-1) ... 252s Setting up r-cran-sass (0.4.9+dfsg-1) ... 252s Setting up build-essential (12.10ubuntu1) ... 252s Setting up r-bioc-all (1.48.0-2) ... 252s Setting up r-bioc-golubesets (1.48.0-2) ... 252s Setting up r-cran-fontawesome (0.5.3-1) ... 252s Setting up gfortran (4:14.2.0-1ubuntu1) ... 252s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 252s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 252s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 252s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 252s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 252s Setting up texlive-bibtex-extra (2024.20250114-1) ... 252s Setting up r-cran-memoise (2.0.1-1) ... 252s Setting up r-cran-promises (1.3.2+dfsg-1) ... 252s Setting up r-base-dev (4.4.3-1) ... 252s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 252s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 252s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 252s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 252s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 252s Setting up r-cran-bookdown (0.42+dfsg-1) ... 252s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 252s Processing triggers for libc-bin (2.41-1ubuntu2) ... 252s Processing triggers for man-db (2.13.0-1) ... 254s Processing triggers for install-info (7.1.1-1) ... 254s Processing triggers for tex-common (6.19) ... 254s Running updmap-sys. This may take some time... done. 254s Running mktexlsr /var/lib/texmf ... done. 254s Building format(s) --all. 300s This may take some time... done. 301s autopkgtest [17:45:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 301s autopkgtest [17:45:57]: test pkg-r-autopkgtest: [----------------------- 301s Test: Try to load the R library Biobase 301s 301s R version 4.4.3 (2025-02-28) -- "Trophy Case" 301s Copyright (C) 2025 The R Foundation for Statistical Computing 301s Platform: s390x-ibm-linux-gnu 301s 301s R is free software and comes with ABSOLUTELY NO WARRANTY. 301s You are welcome to redistribute it under certain conditions. 301s Type 'license()' or 'licence()' for distribution details. 301s 301s R is a collaborative project with many contributors. 301s Type 'contributors()' for more information and 301s 'citation()' on how to cite R or R packages in publications. 301s 301s Type 'demo()' for some demos, 'help()' for on-line help, or 301s 'help.start()' for an HTML browser interface to help. 301s Type 'q()' to quit R. 301s 301s > library('Biobase') 301s Loading required package: BiocGenerics 301s 301s Attaching package: ‘BiocGenerics’ 301s 301s The following objects are masked from ‘package:stats’: 301s 301s IQR, mad, sd, var, xtabs 301s 301s The following objects are masked from ‘package:base’: 301s 301s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 301s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 301s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 301s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 301s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 301s table, tapply, union, unique, unsplit, which.max, which.min 301s 301s Welcome to Bioconductor 301s 301s Vignettes contain introductory material; view with 301s 'browseVignettes()'. To cite Bioconductor, see 301s 'citation("Biobase")', and for packages 'citation("pkgname")'. 301s 301s > 301s > 301s Other tests are currently unsupported! 301s They will be progressively added. 302s autopkgtest [17:45:58]: test pkg-r-autopkgtest: -----------------------] 302s autopkgtest [17:45:58]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 302s pkg-r-autopkgtest PASS 302s autopkgtest [17:45:58]: @@@@@@@@@@@@@@@@@@@@ summary 302s pkg-r-autopkgtest PASS 321s nova [W] Using flock in prodstack6-s390x 321s Creating nova instance adt-plucky-s390x-r-bioc-biobase-20250315-174056-juju-7f2275-prod-proposed-migration-environment-2-8368d3e7-efa1-4e04-a242-4f2a828dfd92 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 321s nova [W] Timed out waiting for 81311845-b4a9-4392-9de9-8675cb3eff44 to get deleted.