0s autopkgtest [15:33:38]: starting date and time: 2025-03-15 15:33:38+0000
  0s autopkgtest [15:33:38]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:33:38]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.giiir_8n/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-affyio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-27.secgroup --name adt-plucky-s390x-r-bioc-affyio-20250315-153338-juju-7f2275-prod-proposed-migration-environment-20-aef211df-31dc-4158-b455-62050878dbc4 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
145s autopkgtest [15:36:03]: testbed dpkg architecture: s390x
145s autopkgtest [15:36:03]: testbed apt version: 2.9.33
145s autopkgtest [15:36:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup
145s autopkgtest [15:36:03]: testbed release detected to be: None
146s autopkgtest [15:36:04]: updating testbed package index (apt update)
147s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
147s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
147s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
147s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
147s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
147s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
147s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [80.6 kB]
147s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1940 B]
147s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
147s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [342 kB]
148s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [14.4 kB]
148s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
148s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [328 B]
148s Fetched 1090 kB in 2s (614 kB/s)
149s Reading package lists...
149s Reading package lists...
149s Building dependency tree...
149s Reading state information...
149s Calculating upgrade...
149s Calculating upgrade...
149s The following packages were automatically installed and are no longer required:
149s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
149s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
149s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
149s   linux-tools-6.11.0-8-generic
149s Use 'sudo apt autoremove' to remove them.
149s The following packages will be upgraded:
149s   python3-jinja2 strace
150s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
150s Need to get 609 kB of archives.
150s After this operation, 27.6 kB of additional disk space will be used.
150s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
150s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
151s Fetched 609 kB in 1s (621 kB/s)
151s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
151s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
151s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
151s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
151s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
151s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
151s Setting up strace (6.13+ds-1ubuntu1) ...
151s Processing triggers for man-db (2.13.0-1) ...
152s Reading package lists...
152s Building dependency tree...
152s Reading state information...
152s Solving dependencies...
152s The following packages will be REMOVED:
152s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
152s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
152s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
152s   linux-tools-6.11.0-8-generic*
152s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
152s After this operation, 167 MB disk space will be freed.
152s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
152s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
152s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
152s Removing libpython3.12t64:s390x (3.12.9-1) ...
152s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
152s Removing libnsl2:s390x (1.3.0-3build3) ...
152s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
152s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
152s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
153s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
153s Processing triggers for libc-bin (2.41-1ubuntu1) ...
153s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
153s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
153s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
153s autopkgtest [15:36:11]: upgrading testbed (apt dist-upgrade and autopurge)
153s Reading package lists...
154s Building dependency tree...
154s Reading state information...
154s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
154s Starting 2 pkgProblemResolver with broken count: 0
154s Done
154s Entering ResolveByKeep
154s 
154s Calculating upgrade...
154s The following packages will be upgraded:
154s   libc-bin libc-dev-bin libc6 libc6-dev locales
154s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s Need to get 9512 kB of archives.
154s After this operation, 8192 B of additional disk space will be used.
154s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
156s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
156s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
159s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
160s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
165s Preconfiguring packages ...
165s Fetched 9512 kB in 11s (876 kB/s)
165s (Reading database ... 
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
165s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
165s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
165s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
165s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
165s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
166s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
166s Setting up libc6:s390x (2.41-1ubuntu2) ...
166s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
166s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
166s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
166s Setting up libc-bin (2.41-1ubuntu2) ...
166s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
166s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
166s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
166s Setting up locales (2.41-1ubuntu2) ...
166s Generating locales (this might take a while)...
167s   en_US.UTF-8... done
167s Generation complete.
167s Setting up libc-dev-bin (2.41-1ubuntu2) ...
167s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
167s Processing triggers for man-db (2.13.0-1) ...
168s Processing triggers for systemd (257.3-1ubuntu3) ...
169s Reading package lists...
169s Building dependency tree...
169s Reading state information...
169s Starting pkgProblemResolver with broken count: 0
169s Starting 2 pkgProblemResolver with broken count: 0
169s Done
169s Solving dependencies...
169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
169s autopkgtest [15:36:27]: rebooting testbed after setup commands that affected boot
188s autopkgtest [15:36:46]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
191s autopkgtest [15:36:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-affyio
192s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affyio 1.76.0-2 (dsc) [2088 B]
192s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affyio 1.76.0-2 (tar) [112 kB]
192s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affyio 1.76.0-2 (diff) [3012 B]
192s gpgv: Signature made Sat Jan 11 19:26:35 2025 UTC
192s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
192s gpgv:                issuer "crusoe@debian.org"
192s gpgv: Can't check signature: No public key
192s dpkg-source: warning: cannot verify inline signature for ./r-bioc-affyio_1.76.0-2.dsc: no acceptable signature found
192s autopkgtest [15:36:50]: testing package r-bioc-affyio version 1.76.0-2
193s autopkgtest [15:36:51]: build not needed
196s autopkgtest [15:36:54]: test pkg-r-autopkgtest: preparing testbed
196s Reading package lists...
197s Building dependency tree...
197s Reading state information...
197s Starting pkgProblemResolver with broken count: 0
197s Starting 2 pkgProblemResolver with broken count: 0
197s Done
197s The following NEW packages will be installed:
197s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
197s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
197s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
197s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
197s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
197s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
197s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
197s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
197s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
197s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
197s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
197s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
197s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
197s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
197s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
197s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
197s   r-base-core r-base-dev r-bioc-affyio r-bioc-biocgenerics r-bioc-zlibbioc
197s   unzip x11-common xdg-utils zip zlib1g-dev
197s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
197s Need to get 123 MB of archives.
197s After this operation, 361 MB of additional disk space will be used.
197s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
198s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
198s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
209s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
209s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
209s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
209s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
209s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
209s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
209s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
212s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
213s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
214s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
235s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
236s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
236s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
236s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
239s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
251s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
251s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
251s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
251s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
251s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
252s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
252s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
253s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
254s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
254s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
254s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
254s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
255s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
256s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
268s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
268s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
268s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
268s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
268s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
269s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
269s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
269s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
269s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
269s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
269s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
269s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
270s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
270s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
270s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
270s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
270s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
271s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
271s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
271s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
286s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
286s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
286s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
286s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
286s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
286s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
289s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
297s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
297s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
297s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
297s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
297s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
298s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
298s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
298s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
298s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
298s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
298s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
298s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
299s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
299s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
300s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
300s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
301s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
301s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
301s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
302s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
302s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
302s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
302s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
302s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
302s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
303s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
304s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
304s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
304s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
304s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
337s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
338s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
338s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
338s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
338s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
338s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
338s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
339s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
339s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affyio s390x 1.76.0-2 [98.5 kB]
339s Preconfiguring packages ...
339s Fetched 123 MB in 2min 22s (868 kB/s)
339s Selecting previously unselected package libisl23:s390x.
339s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
339s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
339s Unpacking libisl23:s390x (0.27-1) ...
339s Selecting previously unselected package libmpc3:s390x.
339s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
339s Unpacking libmpc3:s390x (1.3.1-1build2) ...
339s Selecting previously unselected package cpp-14-s390x-linux-gnu.
339s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package cpp-14.
339s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
339s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
339s Selecting previously unselected package cpp-s390x-linux-gnu.
339s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package cpp.
339s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
339s Unpacking cpp (4:14.2.0-1ubuntu1) ...
339s Selecting previously unselected package libcc1-0:s390x.
339s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libgomp1:s390x.
339s Preparing to unpack .../07-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libitm1:s390x.
339s Preparing to unpack .../08-libitm1_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
339s Selecting previously unselected package libasan8:s390x.
339s Preparing to unpack .../09-libasan8_15-20250222-0ubuntu1_s390x.deb ...
339s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
340s Selecting previously unselected package libubsan1:s390x.
340s Preparing to unpack .../10-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
340s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
340s Selecting previously unselected package libgcc-14-dev:s390x.
340s Preparing to unpack .../11-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gcc-14-s390x-linux-gnu.
340s Preparing to unpack .../12-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gcc-14.
340s Preparing to unpack .../13-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gcc-s390x-linux-gnu.
340s Preparing to unpack .../14-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package gcc.
340s Preparing to unpack .../15-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking gcc (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package libstdc++-14-dev:s390x.
340s Preparing to unpack .../16-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package g++-14-s390x-linux-gnu.
340s Preparing to unpack .../17-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package g++-14.
340s Preparing to unpack .../18-g++-14_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking g++-14 (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package g++-s390x-linux-gnu.
340s Preparing to unpack .../19-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package g++.
340s Preparing to unpack .../20-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking g++ (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package build-essential.
340s Preparing to unpack .../21-build-essential_12.10ubuntu1_s390x.deb ...
340s Unpacking build-essential (12.10ubuntu1) ...
340s Selecting previously unselected package dctrl-tools.
340s Preparing to unpack .../22-dctrl-tools_2.24-3build3_s390x.deb ...
340s Unpacking dctrl-tools (2.24-3build3) ...
340s Selecting previously unselected package libfreetype6:s390x.
340s Preparing to unpack .../23-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
340s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
340s Selecting previously unselected package fonts-dejavu-mono.
340s Preparing to unpack .../24-fonts-dejavu-mono_2.37-8_all.deb ...
340s Unpacking fonts-dejavu-mono (2.37-8) ...
340s Selecting previously unselected package fonts-dejavu-core.
340s Preparing to unpack .../25-fonts-dejavu-core_2.37-8_all.deb ...
340s Unpacking fonts-dejavu-core (2.37-8) ...
340s Selecting previously unselected package fontconfig-config.
340s Preparing to unpack .../26-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
340s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
340s Selecting previously unselected package libfontconfig1:s390x.
340s Preparing to unpack .../27-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
340s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
340s Selecting previously unselected package fontconfig.
340s Preparing to unpack .../28-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
340s Unpacking fontconfig (2.15.0-2ubuntu1) ...
340s Selecting previously unselected package libgfortran5:s390x.
340s Preparing to unpack .../29-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
340s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
340s Selecting previously unselected package libgfortran-14-dev:s390x.
340s Preparing to unpack .../30-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
340s Preparing to unpack .../31-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gfortran-14.
340s Preparing to unpack .../32-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
340s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
340s Selecting previously unselected package gfortran-s390x-linux-gnu.
340s Preparing to unpack .../33-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package gfortran.
340s Preparing to unpack .../34-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
340s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
340s Selecting previously unselected package icu-devtools.
340s Preparing to unpack .../35-icu-devtools_76.1-1ubuntu2_s390x.deb ...
340s Unpacking icu-devtools (76.1-1ubuntu2) ...
340s Selecting previously unselected package libblas3:s390x.
341s Preparing to unpack .../36-libblas3_3.12.1-2_s390x.deb ...
341s Unpacking libblas3:s390x (3.12.1-2) ...
341s Selecting previously unselected package libblas-dev:s390x.
341s Preparing to unpack .../37-libblas-dev_3.12.1-2_s390x.deb ...
341s Unpacking libblas-dev:s390x (3.12.1-2) ...
341s Selecting previously unselected package libbz2-dev:s390x.
341s Preparing to unpack .../38-libbz2-dev_1.0.8-6_s390x.deb ...
341s Unpacking libbz2-dev:s390x (1.0.8-6) ...
341s Selecting previously unselected package libpixman-1-0:s390x.
341s Preparing to unpack .../39-libpixman-1-0_0.44.0-3_s390x.deb ...
341s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
341s Selecting previously unselected package libxcb-render0:s390x.
341s Preparing to unpack .../40-libxcb-render0_1.17.0-2_s390x.deb ...
341s Unpacking libxcb-render0:s390x (1.17.0-2) ...
341s Selecting previously unselected package libxcb-shm0:s390x.
341s Preparing to unpack .../41-libxcb-shm0_1.17.0-2_s390x.deb ...
341s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
341s Selecting previously unselected package libxrender1:s390x.
341s Preparing to unpack .../42-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
341s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
341s Selecting previously unselected package libcairo2:s390x.
341s Preparing to unpack .../43-libcairo2_1.18.2-2_s390x.deb ...
341s Unpacking libcairo2:s390x (1.18.2-2) ...
341s Selecting previously unselected package libdatrie1:s390x.
341s Preparing to unpack .../44-libdatrie1_0.2.13-3build1_s390x.deb ...
341s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
341s Selecting previously unselected package libdeflate0:s390x.
341s Preparing to unpack .../45-libdeflate0_1.23-1_s390x.deb ...
341s Unpacking libdeflate0:s390x (1.23-1) ...
341s Selecting previously unselected package libdeflate-dev:s390x.
341s Preparing to unpack .../46-libdeflate-dev_1.23-1_s390x.deb ...
341s Unpacking libdeflate-dev:s390x (1.23-1) ...
341s Selecting previously unselected package libgraphite2-3:s390x.
341s Preparing to unpack .../47-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
341s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
341s Selecting previously unselected package libharfbuzz0b:s390x.
341s Preparing to unpack .../48-libharfbuzz0b_10.2.0-1_s390x.deb ...
341s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
341s Selecting previously unselected package x11-common.
341s Preparing to unpack .../49-x11-common_1%3a7.7+23ubuntu3_all.deb ...
341s Unpacking x11-common (1:7.7+23ubuntu3) ...
341s Selecting previously unselected package libice6:s390x.
341s Preparing to unpack .../50-libice6_2%3a1.1.1-1_s390x.deb ...
341s Unpacking libice6:s390x (2:1.1.1-1) ...
341s Selecting previously unselected package libicu-dev:s390x.
341s Preparing to unpack .../51-libicu-dev_76.1-1ubuntu2_s390x.deb ...
341s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
341s Selecting previously unselected package libjpeg-turbo8:s390x.
341s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
341s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
341s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
341s Preparing to unpack .../53-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
341s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
341s Selecting previously unselected package libjpeg8:s390x.
341s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_s390x.deb ...
341s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
341s Selecting previously unselected package libjpeg8-dev:s390x.
341s Preparing to unpack .../55-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
341s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
341s Selecting previously unselected package libjpeg-dev:s390x.
341s Preparing to unpack .../56-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
341s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
341s Selecting previously unselected package liblapack3:s390x.
341s Preparing to unpack .../57-liblapack3_3.12.1-2_s390x.deb ...
341s Unpacking liblapack3:s390x (3.12.1-2) ...
341s Selecting previously unselected package liblapack-dev:s390x.
341s Preparing to unpack .../58-liblapack-dev_3.12.1-2_s390x.deb ...
341s Unpacking liblapack-dev:s390x (3.12.1-2) ...
341s Selecting previously unselected package libncurses-dev:s390x.
341s Preparing to unpack .../59-libncurses-dev_6.5+20250216-2_s390x.deb ...
341s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
341s Selecting previously unselected package libthai-data.
341s Preparing to unpack .../60-libthai-data_0.1.29-2build1_all.deb ...
341s Unpacking libthai-data (0.1.29-2build1) ...
341s Selecting previously unselected package libthai0:s390x.
341s Preparing to unpack .../61-libthai0_0.1.29-2build1_s390x.deb ...
341s Unpacking libthai0:s390x (0.1.29-2build1) ...
341s Selecting previously unselected package libpango-1.0-0:s390x.
341s Preparing to unpack .../62-libpango-1.0-0_1.56.2-1_s390x.deb ...
341s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
341s Selecting previously unselected package libpangoft2-1.0-0:s390x.
341s Preparing to unpack .../63-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
341s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
341s Selecting previously unselected package libpangocairo-1.0-0:s390x.
341s Preparing to unpack .../64-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
341s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
341s Selecting previously unselected package libpaper2:s390x.
341s Preparing to unpack .../65-libpaper2_2.2.5-0.3_s390x.deb ...
341s Unpacking libpaper2:s390x (2.2.5-0.3) ...
341s Selecting previously unselected package libpaper-utils.
341s Preparing to unpack .../66-libpaper-utils_2.2.5-0.3_s390x.deb ...
341s Unpacking libpaper-utils (2.2.5-0.3) ...
341s Selecting previously unselected package libpcre2-16-0:s390x.
341s Preparing to unpack .../67-libpcre2-16-0_10.45-1_s390x.deb ...
341s Unpacking libpcre2-16-0:s390x (10.45-1) ...
341s Selecting previously unselected package libpcre2-32-0:s390x.
341s Preparing to unpack .../68-libpcre2-32-0_10.45-1_s390x.deb ...
341s Unpacking libpcre2-32-0:s390x (10.45-1) ...
341s Selecting previously unselected package libpcre2-posix3:s390x.
341s Preparing to unpack .../69-libpcre2-posix3_10.45-1_s390x.deb ...
341s Unpacking libpcre2-posix3:s390x (10.45-1) ...
341s Selecting previously unselected package libpcre2-dev:s390x.
341s Preparing to unpack .../70-libpcre2-dev_10.45-1_s390x.deb ...
341s Unpacking libpcre2-dev:s390x (10.45-1) ...
341s Selecting previously unselected package libpkgconf3:s390x.
341s Preparing to unpack .../71-libpkgconf3_1.8.1-4_s390x.deb ...
341s Unpacking libpkgconf3:s390x (1.8.1-4) ...
341s Selecting previously unselected package zlib1g-dev:s390x.
341s Preparing to unpack .../72-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
341s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
341s Selecting previously unselected package libpng-dev:s390x.
341s Preparing to unpack .../73-libpng-dev_1.6.47-1_s390x.deb ...
341s Unpacking libpng-dev:s390x (1.6.47-1) ...
341s Selecting previously unselected package libreadline-dev:s390x.
341s Preparing to unpack .../74-libreadline-dev_8.2-6_s390x.deb ...
341s Unpacking libreadline-dev:s390x (8.2-6) ...
341s Selecting previously unselected package libsharpyuv0:s390x.
341s Preparing to unpack .../75-libsharpyuv0_1.5.0-0.1_s390x.deb ...
341s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
341s Selecting previously unselected package libsm6:s390x.
341s Preparing to unpack .../76-libsm6_2%3a1.2.4-1_s390x.deb ...
341s Unpacking libsm6:s390x (2:1.2.4-1) ...
341s Selecting previously unselected package libtcl8.6:s390x.
341s Preparing to unpack .../77-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
341s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
341s Selecting previously unselected package libjbig0:s390x.
341s Preparing to unpack .../78-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
341s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
341s Selecting previously unselected package libwebp7:s390x.
341s Preparing to unpack .../79-libwebp7_1.5.0-0.1_s390x.deb ...
341s Unpacking libwebp7:s390x (1.5.0-0.1) ...
341s Selecting previously unselected package libtiff6:s390x.
341s Preparing to unpack .../80-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
341s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
341s Selecting previously unselected package libxft2:s390x.
341s Preparing to unpack .../81-libxft2_2.3.6-1build1_s390x.deb ...
341s Unpacking libxft2:s390x (2.3.6-1build1) ...
341s Selecting previously unselected package libxss1:s390x.
341s Preparing to unpack .../82-libxss1_1%3a1.2.3-1build3_s390x.deb ...
341s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
341s Selecting previously unselected package libtk8.6:s390x.
341s Preparing to unpack .../83-libtk8.6_8.6.16-1_s390x.deb ...
341s Unpacking libtk8.6:s390x (8.6.16-1) ...
341s Selecting previously unselected package libxt6t64:s390x.
341s Preparing to unpack .../84-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
341s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
341s Selecting previously unselected package zip.
341s Preparing to unpack .../85-zip_3.0-14ubuntu2_s390x.deb ...
341s Unpacking zip (3.0-14ubuntu2) ...
341s Selecting previously unselected package unzip.
341s Preparing to unpack .../86-unzip_6.0-28ubuntu6_s390x.deb ...
341s Unpacking unzip (6.0-28ubuntu6) ...
341s Selecting previously unselected package xdg-utils.
341s Preparing to unpack .../87-xdg-utils_1.2.1-2ubuntu1_all.deb ...
341s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
341s Selecting previously unselected package r-base-core.
341s Preparing to unpack .../88-r-base-core_4.4.3-1_s390x.deb ...
341s Unpacking r-base-core (4.4.3-1) ...
342s Selecting previously unselected package liblzma-dev:s390x.
342s Preparing to unpack .../89-liblzma-dev_5.6.4-1_s390x.deb ...
342s Unpacking liblzma-dev:s390x (5.6.4-1) ...
342s Selecting previously unselected package pkgconf-bin.
342s Preparing to unpack .../90-pkgconf-bin_1.8.1-4_s390x.deb ...
342s Unpacking pkgconf-bin (1.8.1-4) ...
342s Selecting previously unselected package pkgconf:s390x.
342s Preparing to unpack .../91-pkgconf_1.8.1-4_s390x.deb ...
342s Unpacking pkgconf:s390x (1.8.1-4) ...
342s Selecting previously unselected package libtirpc-dev:s390x.
342s Preparing to unpack .../92-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
342s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
342s Selecting previously unselected package r-base-dev.
342s Preparing to unpack .../93-r-base-dev_4.4.3-1_all.deb ...
342s Unpacking r-base-dev (4.4.3-1) ...
342s Selecting previously unselected package pkg-r-autopkgtest.
342s Preparing to unpack .../94-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
342s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
342s Selecting previously unselected package r-bioc-biocgenerics.
342s Preparing to unpack .../95-r-bioc-biocgenerics_0.52.0-2_all.deb ...
342s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
342s Selecting previously unselected package r-bioc-zlibbioc.
342s Preparing to unpack .../96-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
342s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
342s Selecting previously unselected package r-bioc-affyio.
342s Preparing to unpack .../97-r-bioc-affyio_1.76.0-2_s390x.deb ...
342s Unpacking r-bioc-affyio (1.76.0-2) ...
342s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
342s Setting up libpixman-1-0:s390x (0.44.0-3) ...
342s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
342s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
342s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
342s Setting up libdatrie1:s390x (0.2.13-3build1) ...
342s Setting up libxcb-render0:s390x (1.17.0-2) ...
342s Setting up unzip (6.0-28ubuntu6) ...
342s Setting up x11-common (1:7.7+23ubuntu3) ...
342s Setting up libdeflate0:s390x (1.23-1) ...
342s Setting up libxcb-shm0:s390x (1.17.0-2) ...
342s Setting up libreadline-dev:s390x (8.2-6) ...
342s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
342s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
342s Setting up libpcre2-16-0:s390x (10.45-1) ...
342s Setting up zip (3.0-14ubuntu2) ...
342s Setting up libpcre2-32-0:s390x (10.45-1) ...
342s Setting up libblas3:s390x (3.12.1-2) ...
342s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
342s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
342s Setting up libpkgconf3:s390x (1.8.1-4) ...
342s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
342s Setting up fonts-dejavu-mono (2.37-8) ...
342s Setting up libmpc3:s390x (1.3.1-1build2) ...
342s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
342s Setting up icu-devtools (76.1-1ubuntu2) ...
342s Setting up fonts-dejavu-core (2.37-8) ...
342s Setting up pkgconf-bin (1.8.1-4) ...
342s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
342s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
342s Setting up libwebp7:s390x (1.5.0-0.1) ...
342s Setting up liblzma-dev:s390x (5.6.4-1) ...
342s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
342s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
342s Setting up libpcre2-posix3:s390x (10.45-1) ...
342s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
342s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
342s Setting up libthai-data (0.1.29-2build1) ...
342s Setting up libxss1:s390x (1:1.2.3-1build3) ...
342s Setting up libpaper2:s390x (2.2.5-0.3) ...
342s Setting up libisl23:s390x (0.27-1) ...
342s Setting up libdeflate-dev:s390x (1.23-1) ...
342s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
342s Setting up xdg-utils (1.2.1-2ubuntu1) ...
342s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
342s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
342s Setting up libblas-dev:s390x (3.12.1-2) ...
342s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
342s Setting up dctrl-tools (2.24-3build3) ...
342s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
342s Setting up libbz2-dev:s390x (1.0.8-6) ...
342s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
342s Setting up libice6:s390x (2:1.1.1-1) ...
342s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
342s Setting up liblapack3:s390x (3.12.1-2) ...
342s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
342s Setting up libpcre2-dev:s390x (10.45-1) ...
342s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
342s Setting up libpng-dev:s390x (1.6.47-1) ...
342s Setting up libpaper-utils (2.2.5-0.3) ...
342s Setting up pkgconf:s390x (1.8.1-4) ...
342s Setting up libthai0:s390x (0.1.29-2build1) ...
342s Setting up liblapack-dev:s390x (3.12.1-2) ...
342s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
342s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
342s Setting up cpp-14 (14.2.0-17ubuntu3) ...
342s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
342s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
342s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
342s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
342s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
342s Setting up libsm6:s390x (2:1.2.4-1) ...
342s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
342s Setting up fontconfig (2.15.0-2ubuntu1) ...
344s Regenerating fonts cache... done.
344s Setting up libxft2:s390x (2.3.6-1build1) ...
344s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
344s Setting up libtk8.6:s390x (8.6.16-1) ...
344s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
344s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
344s Setting up libcairo2:s390x (1.18.2-2) ...
344s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
344s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
344s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
344s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
344s Setting up cpp (4:14.2.0-1ubuntu1) ...
344s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
344s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
344s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
344s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
344s Setting up gcc-14 (14.2.0-17ubuntu3) ...
344s Setting up r-base-core (4.4.3-1) ...
344s Creating config file /etc/R/Renviron with new version
344s Setting up g++-14 (14.2.0-17ubuntu3) ...
344s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
344s Setting up r-bioc-biocgenerics (0.52.0-2) ...
344s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
344s Setting up gcc (4:14.2.0-1ubuntu1) ...
344s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
344s Setting up g++ (4:14.2.0-1ubuntu1) ...
344s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
344s Setting up build-essential (12.10ubuntu1) ...
344s Setting up r-bioc-affyio (1.76.0-2) ...
344s Setting up gfortran (4:14.2.0-1ubuntu1) ...
344s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
344s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
345s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
345s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
345s Setting up r-base-dev (4.4.3-1) ...
345s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
345s Processing triggers for libc-bin (2.41-1ubuntu2) ...
345s Processing triggers for man-db (2.13.0-1) ...
346s Processing triggers for install-info (7.1.1-1) ...
347s autopkgtest [15:39:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
347s autopkgtest [15:39:25]: test pkg-r-autopkgtest: [-----------------------
347s Test: Try to load the R library affyio
347s 
347s R version 4.4.3 (2025-02-28) -- "Trophy Case"
347s Copyright (C) 2025 The R Foundation for Statistical Computing
347s Platform: s390x-ibm-linux-gnu
347s 
347s R is free software and comes with ABSOLUTELY NO WARRANTY.
347s You are welcome to redistribute it under certain conditions.
347s Type 'license()' or 'licence()' for distribution details.
347s 
347s R is a collaborative project with many contributors.
347s Type 'contributors()' for more information and
347s 'citation()' on how to cite R or R packages in publications.
347s 
347s Type 'demo()' for some demos, 'help()' for on-line help, or
347s 'help.start()' for an HTML browser interface to help.
347s Type 'q()' to quit R.
347s 
347s > library('affyio')
347s > 
347s > 
347s Other tests are currently unsupported!
347s They will be progressively added.
347s autopkgtest [15:39:25]: test pkg-r-autopkgtest: -----------------------]
348s pkg-r-autopkgtest    PASS
348s autopkgtest [15:39:26]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
348s autopkgtest [15:39:26]: @@@@@@@@@@@@@@@@@@@@ summary
348s pkg-r-autopkgtest    PASS
366s nova [W] Using flock in prodstack6-s390x
366s Creating nova instance adt-plucky-s390x-r-bioc-affyio-20250315-153338-juju-7f2275-prod-proposed-migration-environment-20-aef211df-31dc-4158-b455-62050878dbc4 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
366s nova [W] Timed out waiting for f9621984-9986-4a66-aa43-7d3e46cb63ee to get deleted.