0s autopkgtest [17:40:28]: starting date and time: 2025-03-15 17:40:28+0000
  0s autopkgtest [17:40:28]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:40:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i3yvhz1i/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-affy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-11.secgroup --name adt-plucky-s390x-r-bioc-affy-20250315-174027-juju-7f2275-prod-proposed-migration-environment-2-8d99a2ee-47f3-4041-a63e-dab3f8e8d388 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
124s autopkgtest [17:42:32]: testbed dpkg architecture: s390x
124s autopkgtest [17:42:32]: testbed apt version: 2.9.33
125s autopkgtest [17:42:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup
125s autopkgtest [17:42:33]: testbed release detected to be: None
126s autopkgtest [17:42:34]: updating testbed package index (apt update)
126s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
126s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
126s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
126s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
126s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
126s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
126s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
127s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
127s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
127s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
127s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
127s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
127s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
127s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
127s Fetched 1073 kB in 1s (846 kB/s)
128s Reading package lists...
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
129s Calculating upgrade...
129s Calculating upgrade...
129s The following packages were automatically installed and are no longer required:
129s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
129s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
129s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
129s   linux-tools-6.11.0-8-generic
129s Use 'sudo apt autoremove' to remove them.
129s The following packages will be upgraded:
129s   pinentry-curses python3-jinja2 strace
129s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
129s Need to get 652 kB of archives.
129s After this operation, 27.6 kB of additional disk space will be used.
129s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
129s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
129s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
130s Fetched 652 kB in 1s (897 kB/s)
130s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
130s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
130s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
130s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
130s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
130s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
130s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
130s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
130s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
130s Setting up strace (6.13+ds-1ubuntu1) ...
130s Processing triggers for man-db (2.13.0-1) ...
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
131s Solving dependencies...
131s The following packages will be REMOVED:
131s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
131s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
131s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
131s   linux-tools-6.11.0-8-generic*
131s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
131s After this operation, 167 MB disk space will be freed.
131s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
131s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
131s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
131s Removing libpython3.12t64:s390x (3.12.9-1) ...
131s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
131s Removing libnsl2:s390x (1.3.0-3build3) ...
131s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
131s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
131s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
132s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
132s Processing triggers for libc-bin (2.41-1ubuntu1) ...
132s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
132s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
132s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
132s autopkgtest [17:42:40]: upgrading testbed (apt dist-upgrade and autopurge)
133s Reading package lists...
133s Building dependency tree...
133s Reading state information...
133s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
133s Starting 2 pkgProblemResolver with broken count: 0
133s Done
133s Entering ResolveByKeep
133s 
133s Calculating upgrade...
133s The following packages will be upgraded:
133s   libc-bin libc-dev-bin libc6 libc6-dev locales
133s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s Need to get 9512 kB of archives.
133s After this operation, 8192 B of additional disk space will be used.
133s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
135s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
135s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
136s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
137s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
139s Preconfiguring packages ...
139s Fetched 9512 kB in 6s (1670 kB/s)
139s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
139s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
139s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
139s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
139s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
139s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
139s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
140s Setting up libc6:s390x (2.41-1ubuntu2) ...
140s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
140s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
140s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
140s Setting up libc-bin (2.41-1ubuntu2) ...
140s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
140s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
140s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
140s Setting up locales (2.41-1ubuntu2) ...
140s Generating locales (this might take a while)...
141s   en_US.UTF-8... done
141s Generation complete.
141s Setting up libc-dev-bin (2.41-1ubuntu2) ...
141s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
141s Processing triggers for man-db (2.13.0-1) ...
142s Processing triggers for systemd (257.3-1ubuntu3) ...
143s Reading package lists...
143s Building dependency tree...
143s Reading state information...
143s Starting pkgProblemResolver with broken count: 0
143s Starting 2 pkgProblemResolver with broken count: 0
143s Done
143s Solving dependencies...
143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
143s autopkgtest [17:42:51]: rebooting testbed after setup commands that affected boot
162s autopkgtest [17:43:10]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
165s autopkgtest [17:43:13]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-affy
168s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affy 1.84.0-2 (dsc) [2162 B]
168s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affy 1.84.0-2 (tar) [1771 kB]
168s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affy 1.84.0-2 (diff) [5324 B]
168s gpgv: Signature made Sun Jan 12 10:14:54 2025 UTC
168s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
168s gpgv:                issuer "crusoe@debian.org"
168s gpgv: Can't check signature: No public key
168s dpkg-source: warning: cannot verify inline signature for ./r-bioc-affy_1.84.0-2.dsc: no acceptable signature found
168s autopkgtest [17:43:16]: testing package r-bioc-affy version 1.84.0-2
168s autopkgtest [17:43:16]: build not needed
170s autopkgtest [17:43:18]: test pkg-r-autopkgtest: preparing testbed
170s Reading package lists...
170s Building dependency tree...
170s Reading state information...
171s Starting pkgProblemResolver with broken count: 0
171s Starting 2 pkgProblemResolver with broken count: 0
171s Done
171s The following NEW packages will be installed:
171s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
171s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
171s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
171s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
171s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
171s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
171s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
171s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
171s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
171s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
171s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
171s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
171s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
171s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
171s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
171s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
171s   r-base-core r-base-dev r-bioc-affy r-bioc-affyio r-bioc-biobase
171s   r-bioc-biocgenerics r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager
171s   unzip x11-common xdg-utils zip zlib1g-dev
171s 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded.
171s Need to get 128 MB of archives.
171s After this operation, 368 MB of additional disk space will be used.
171s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
172s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
172s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
177s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
177s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
177s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
177s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
177s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
177s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
177s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
179s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
179s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
180s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
184s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
184s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
184s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
184s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
185s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
189s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
189s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
189s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
189s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
189s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
189s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
189s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
189s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
189s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
189s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
189s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
189s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
190s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
190s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
193s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
193s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
193s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
193s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
193s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
193s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
193s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
193s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
193s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
193s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
193s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
193s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
193s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
193s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
193s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
193s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
193s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
194s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
194s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
194s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
196s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
196s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
196s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
196s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
196s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
196s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
196s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
197s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
197s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
197s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
197s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
197s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
197s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
197s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
197s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
197s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
197s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
197s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
197s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
197s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
197s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
197s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
197s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
197s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
197s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
197s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
197s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
197s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
197s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
197s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
197s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
197s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
197s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
197s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
197s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
197s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
197s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
199s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
199s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
199s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
199s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
199s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
199s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
199s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
199s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
200s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
200s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affyio s390x 1.76.0-2 [98.5 kB]
200s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
200s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-preprocesscore s390x 1.68.0+ds-2 [177 kB]
200s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affy s390x 1.84.0-2 [2016 kB]
201s Preconfiguring packages ...
201s Fetched 128 MB in 29s (4342 kB/s)
201s Selecting previously unselected package libisl23:s390x.
201s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
201s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
201s Unpacking libisl23:s390x (0.27-1) ...
201s Selecting previously unselected package libmpc3:s390x.
201s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
201s Unpacking libmpc3:s390x (1.3.1-1build2) ...
201s Selecting previously unselected package cpp-14-s390x-linux-gnu.
201s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
201s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
201s Selecting previously unselected package cpp-14.
201s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
201s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
201s Selecting previously unselected package cpp-s390x-linux-gnu.
201s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
201s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
201s Selecting previously unselected package cpp.
201s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
201s Unpacking cpp (4:14.2.0-1ubuntu1) ...
201s Selecting previously unselected package libcc1-0:s390x.
201s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
201s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
201s Selecting previously unselected package libgomp1:s390x.
201s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
201s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
201s Selecting previously unselected package libitm1:s390x.
201s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
201s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
201s Selecting previously unselected package libasan8:s390x.
201s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
201s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
201s Selecting previously unselected package libubsan1:s390x.
201s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
201s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
201s Selecting previously unselected package libgcc-14-dev:s390x.
201s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
201s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
201s Selecting previously unselected package gcc-14-s390x-linux-gnu.
201s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
201s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
201s Selecting previously unselected package gcc-14.
201s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
201s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
201s Selecting previously unselected package gcc-s390x-linux-gnu.
201s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
201s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
201s Selecting previously unselected package gcc.
201s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
201s Unpacking gcc (4:14.2.0-1ubuntu1) ...
201s Selecting previously unselected package libstdc++-14-dev:s390x.
201s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
201s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
201s Selecting previously unselected package g++-14-s390x-linux-gnu.
201s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
201s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package g++-14.
202s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking g++-14 (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package g++-s390x-linux-gnu.
202s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package g++.
202s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking g++ (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package build-essential.
202s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
202s Unpacking build-essential (12.10ubuntu1) ...
202s Selecting previously unselected package dctrl-tools.
202s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
202s Unpacking dctrl-tools (2.24-3build3) ...
202s Selecting previously unselected package libfreetype6:s390x.
202s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
202s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
202s Selecting previously unselected package fonts-dejavu-mono.
202s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
202s Unpacking fonts-dejavu-mono (2.37-8) ...
202s Selecting previously unselected package fonts-dejavu-core.
202s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
202s Unpacking fonts-dejavu-core (2.37-8) ...
202s Selecting previously unselected package fontconfig-config.
202s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
202s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
202s Selecting previously unselected package libfontconfig1:s390x.
202s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
202s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
202s Selecting previously unselected package fontconfig.
202s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
202s Unpacking fontconfig (2.15.0-2ubuntu1) ...
202s Selecting previously unselected package libgfortran5:s390x.
202s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
202s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
202s Selecting previously unselected package libgfortran-14-dev:s390x.
202s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
202s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package gfortran-14.
202s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package gfortran-s390x-linux-gnu.
202s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package gfortran.
202s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package icu-devtools.
202s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
202s Unpacking icu-devtools (76.1-1ubuntu2) ...
202s Selecting previously unselected package libblas3:s390x.
202s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
202s Unpacking libblas3:s390x (3.12.1-2) ...
202s Selecting previously unselected package libblas-dev:s390x.
202s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
202s Unpacking libblas-dev:s390x (3.12.1-2) ...
202s Selecting previously unselected package libbz2-dev:s390x.
202s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
202s Unpacking libbz2-dev:s390x (1.0.8-6) ...
202s Selecting previously unselected package libpixman-1-0:s390x.
202s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
202s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
202s Selecting previously unselected package libxcb-render0:s390x.
202s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
202s Unpacking libxcb-render0:s390x (1.17.0-2) ...
202s Selecting previously unselected package libxcb-shm0:s390x.
202s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
202s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
202s Selecting previously unselected package libxrender1:s390x.
202s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
202s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
202s Selecting previously unselected package libcairo2:s390x.
202s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
202s Unpacking libcairo2:s390x (1.18.2-2) ...
202s Selecting previously unselected package libdatrie1:s390x.
202s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
202s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
202s Selecting previously unselected package libdeflate0:s390x.
202s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
202s Unpacking libdeflate0:s390x (1.23-1) ...
202s Selecting previously unselected package libdeflate-dev:s390x.
202s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
202s Unpacking libdeflate-dev:s390x (1.23-1) ...
202s Selecting previously unselected package libgraphite2-3:s390x.
202s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
202s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
202s Selecting previously unselected package libharfbuzz0b:s390x.
202s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
202s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
202s Selecting previously unselected package x11-common.
202s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
202s Unpacking x11-common (1:7.7+23ubuntu3) ...
202s Selecting previously unselected package libice6:s390x.
202s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
202s Unpacking libice6:s390x (2:1.1.1-1) ...
202s Selecting previously unselected package libicu-dev:s390x.
202s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
202s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
202s Selecting previously unselected package libjpeg-turbo8:s390x.
202s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
202s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
202s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
202s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
202s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
202s Selecting previously unselected package libjpeg8:s390x.
202s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
202s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
202s Selecting previously unselected package libjpeg8-dev:s390x.
202s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
202s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
202s Selecting previously unselected package libjpeg-dev:s390x.
202s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
202s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
202s Selecting previously unselected package liblapack3:s390x.
202s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
202s Unpacking liblapack3:s390x (3.12.1-2) ...
202s Selecting previously unselected package liblapack-dev:s390x.
202s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ...
202s Unpacking liblapack-dev:s390x (3.12.1-2) ...
203s Selecting previously unselected package libncurses-dev:s390x.
203s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
203s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
203s Selecting previously unselected package libthai-data.
203s Preparing to unpack .../060-libthai-data_0.1.29-2build1_all.deb ...
203s Unpacking libthai-data (0.1.29-2build1) ...
203s Selecting previously unselected package libthai0:s390x.
203s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ...
203s Unpacking libthai0:s390x (0.1.29-2build1) ...
203s Selecting previously unselected package libpango-1.0-0:s390x.
203s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
203s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
203s Selecting previously unselected package libpangoft2-1.0-0:s390x.
203s Preparing to unpack .../063-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
203s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
203s Selecting previously unselected package libpangocairo-1.0-0:s390x.
203s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
203s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
203s Selecting previously unselected package libpaper2:s390x.
203s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
203s Unpacking libpaper2:s390x (2.2.5-0.3) ...
203s Selecting previously unselected package libpaper-utils.
203s Preparing to unpack .../066-libpaper-utils_2.2.5-0.3_s390x.deb ...
203s Unpacking libpaper-utils (2.2.5-0.3) ...
203s Selecting previously unselected package libpcre2-16-0:s390x.
203s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ...
203s Unpacking libpcre2-16-0:s390x (10.45-1) ...
203s Selecting previously unselected package libpcre2-32-0:s390x.
203s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ...
203s Unpacking libpcre2-32-0:s390x (10.45-1) ...
203s Selecting previously unselected package libpcre2-posix3:s390x.
203s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ...
203s Unpacking libpcre2-posix3:s390x (10.45-1) ...
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203s Selecting previously unselected package libpkgconf3:s390x.
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203s Selecting previously unselected package zlib1g-dev:s390x.
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203s Selecting previously unselected package libpng-dev:s390x.
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203s Selecting previously unselected package libsharpyuv0:s390x.
203s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ...
203s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
203s Selecting previously unselected package libsm6:s390x.
203s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ...
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203s Selecting previously unselected package libxss1:s390x.
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203s Selecting previously unselected package liblzma-dev:s390x.
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203s Unpacking liblzma-dev:s390x (5.6.4-1) ...
203s Selecting previously unselected package pkgconf-bin.
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203s Unpacking pkgconf-bin (1.8.1-4) ...
203s Selecting previously unselected package pkgconf:s390x.
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203s Unpacking pkgconf:s390x (1.8.1-4) ...
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203s Selecting previously unselected package r-bioc-biocgenerics.
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203s Selecting previously unselected package r-bioc-biobase.
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203s Unpacking r-bioc-biobase (2.66.0-2) ...
203s Selecting previously unselected package r-bioc-zlibbioc.
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203s Selecting previously unselected package r-bioc-affyio.
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203s Selecting previously unselected package r-bioc-preprocesscore.
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203s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ...
203s Selecting previously unselected package r-bioc-affy.
203s Preparing to unpack .../101-r-bioc-affy_1.84.0-2_s390x.deb ...
203s Unpacking r-bioc-affy (1.84.0-2) ...
203s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
203s Setting up libpixman-1-0:s390x (0.44.0-3) ...
203s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
203s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
203s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
203s Setting up libdatrie1:s390x (0.2.13-3build1) ...
203s Setting up libxcb-render0:s390x (1.17.0-2) ...
203s Setting up unzip (6.0-28ubuntu6) ...
203s Setting up x11-common (1:7.7+23ubuntu3) ...
204s Setting up libdeflate0:s390x (1.23-1) ...
204s Setting up libxcb-shm0:s390x (1.17.0-2) ...
204s Setting up libreadline-dev:s390x (8.2-6) ...
204s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
204s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
204s Setting up libpcre2-16-0:s390x (10.45-1) ...
204s Setting up zip (3.0-14ubuntu2) ...
204s Setting up libpcre2-32-0:s390x (10.45-1) ...
204s Setting up libblas3:s390x (3.12.1-2) ...
204s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
204s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
204s Setting up libpkgconf3:s390x (1.8.1-4) ...
204s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
204s Setting up fonts-dejavu-mono (2.37-8) ...
204s Setting up libmpc3:s390x (1.3.1-1build2) ...
204s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
204s Setting up icu-devtools (76.1-1ubuntu2) ...
204s Setting up fonts-dejavu-core (2.37-8) ...
204s Setting up pkgconf-bin (1.8.1-4) ...
204s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
204s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
204s Setting up libwebp7:s390x (1.5.0-0.1) ...
204s Setting up liblzma-dev:s390x (5.6.4-1) ...
204s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
204s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
204s Setting up libpcre2-posix3:s390x (10.45-1) ...
204s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
204s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
204s Setting up libthai-data (0.1.29-2build1) ...
204s Setting up libxss1:s390x (1:1.2.3-1build3) ...
204s Setting up libpaper2:s390x (2.2.5-0.3) ...
204s Setting up libisl23:s390x (0.27-1) ...
204s Setting up libdeflate-dev:s390x (1.23-1) ...
204s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
204s Setting up xdg-utils (1.2.1-2ubuntu1) ...
204s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
204s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
204s Setting up libblas-dev:s390x (3.12.1-2) ...
204s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
204s Setting up dctrl-tools (2.24-3build3) ...
204s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
204s Setting up libbz2-dev:s390x (1.0.8-6) ...
204s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
204s Setting up libice6:s390x (2:1.1.1-1) ...
204s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
204s Setting up liblapack3:s390x (3.12.1-2) ...
204s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
204s Setting up libpcre2-dev:s390x (10.45-1) ...
204s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
204s Setting up libpng-dev:s390x (1.6.47-1) ...
204s Setting up libpaper-utils (2.2.5-0.3) ...
204s Setting up pkgconf:s390x (1.8.1-4) ...
204s Setting up libthai0:s390x (0.1.29-2build1) ...
204s Setting up liblapack-dev:s390x (3.12.1-2) ...
204s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
204s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
204s Setting up cpp-14 (14.2.0-17ubuntu3) ...
204s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
204s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
204s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
204s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
204s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
204s Setting up libsm6:s390x (2:1.2.4-1) ...
204s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
204s Setting up fontconfig (2.15.0-2ubuntu1) ...
206s Regenerating fonts cache... done.
206s Setting up libxft2:s390x (2.3.6-1build1) ...
206s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
206s Setting up libtk8.6:s390x (8.6.16-1) ...
206s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
206s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
206s Setting up libcairo2:s390x (1.18.2-2) ...
206s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
206s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
206s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
206s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
206s Setting up cpp (4:14.2.0-1ubuntu1) ...
206s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
206s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
206s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
206s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
206s Setting up gcc-14 (14.2.0-17ubuntu3) ...
206s Setting up r-base-core (4.4.3-1) ...
206s Creating config file /etc/R/Renviron with new version
206s Setting up g++-14 (14.2.0-17ubuntu3) ...
206s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
206s Setting up r-bioc-biocgenerics (0.52.0-2) ...
206s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
206s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
206s Setting up gcc (4:14.2.0-1ubuntu1) ...
206s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
206s Setting up r-bioc-biobase (2.66.0-2) ...
206s Setting up g++ (4:14.2.0-1ubuntu1) ...
206s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
206s Setting up build-essential (12.10ubuntu1) ...
206s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ...
206s Setting up r-bioc-affyio (1.76.0-2) ...
206s Setting up gfortran (4:14.2.0-1ubuntu1) ...
206s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
206s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
206s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
206s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
206s Setting up r-bioc-affy (1.84.0-2) ...
206s Setting up r-base-dev (4.4.3-1) ...
206s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
206s Processing triggers for libc-bin (2.41-1ubuntu2) ...
206s Processing triggers for man-db (2.13.0-1) ...
207s Processing triggers for install-info (7.1.1-1) ...
208s autopkgtest [17:43:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
208s autopkgtest [17:43:56]: test pkg-r-autopkgtest: [-----------------------
208s Test: Try to load the R library affy
208s 
208s R version 4.4.3 (2025-02-28) -- "Trophy Case"
208s Copyright (C) 2025 The R Foundation for Statistical Computing
208s Platform: s390x-ibm-linux-gnu
208s 
208s R is free software and comes with ABSOLUTELY NO WARRANTY.
208s You are welcome to redistribute it under certain conditions.
208s Type 'license()' or 'licence()' for distribution details.
208s 
208s R is a collaborative project with many contributors.
208s Type 'contributors()' for more information and
208s 'citation()' on how to cite R or R packages in publications.
208s 
208s Type 'demo()' for some demos, 'help()' for on-line help, or
208s 'help.start()' for an HTML browser interface to help.
208s Type 'q()' to quit R.
208s 
209s > library('affy')
209s Loading required package: BiocGenerics
209s 
209s Attaching package: ‘BiocGenerics’
209s 
209s The following objects are masked from ‘package:stats’:
209s 
209s     IQR, mad, sd, var, xtabs
209s 
209s The following objects are masked from ‘package:base’:
209s 
209s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
209s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
209s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
209s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
209s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
209s     table, tapply, union, unique, unsplit, which.max, which.min
209s 
209s Loading required package: Biobase
209s Welcome to Bioconductor
209s 
209s     Vignettes contain introductory material; view with
209s     'browseVignettes()'. To cite Bioconductor, see
209s     'citation("Biobase")', and for packages 'citation("pkgname")'.
209s 
209s > 
209s > 
209s Other tests are currently unsupported!
209s They will be progressively added.
209s autopkgtest [17:43:57]: test pkg-r-autopkgtest: -----------------------]
210s autopkgtest [17:43:58]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
210s pkg-r-autopkgtest    PASS
210s autopkgtest [17:43:58]: @@@@@@@@@@@@@@@@@@@@ summary
210s pkg-r-autopkgtest    PASS
215s nova [W] Using flock in prodstack6-s390x
215s flock: timeout while waiting to get lock
215s Creating nova instance adt-plucky-s390x-r-bioc-affy-20250315-174027-juju-7f2275-prod-proposed-migration-environment-2-8d99a2ee-47f3-4041-a63e-dab3f8e8d388 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
215s nova [W] Timed out waiting for 51b32756-7234-4598-937f-6271a7409d27 to get deleted.