0s autopkgtest [17:40:02]: starting date and time: 2025-03-15 17:40:02+0000
  0s autopkgtest [17:40:02]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:40:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bwf5fy6t/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-affxparser --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-30.secgroup --name adt-plucky-s390x-r-bioc-affxparser-20250315-174002-juju-7f2275-prod-proposed-migration-environment-2-655e94d2-cec5-4481-8a15-b6c8342cee3e --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
126s autopkgtest [17:42:08]: testbed dpkg architecture: s390x
126s autopkgtest [17:42:08]: testbed apt version: 2.9.33
127s autopkgtest [17:42:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup
127s autopkgtest [17:42:09]: testbed release detected to be: None
128s autopkgtest [17:42:10]: updating testbed package index (apt update)
128s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
128s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
128s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
128s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
128s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
129s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
129s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
129s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
129s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
129s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
129s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
129s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
129s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
129s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
129s Fetched 1073 kB in 1s (747 kB/s)
130s Reading package lists...
130s Reading package lists...
131s Building dependency tree...
131s Reading state information...
131s Calculating upgrade...
131s Calculating upgrade...
131s The following packages were automatically installed and are no longer required:
131s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
131s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
131s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
131s   linux-tools-6.11.0-8-generic
131s Use 'sudo apt autoremove' to remove them.
131s The following packages will be upgraded:
131s   pinentry-curses python3-jinja2 strace
131s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s Need to get 652 kB of archives.
131s After this operation, 27.6 kB of additional disk space will be used.
131s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
132s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
132s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
132s Fetched 652 kB in 1s (735 kB/s)
132s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
132s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
132s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
132s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
132s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
132s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
132s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
132s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
132s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
132s Setting up strace (6.13+ds-1ubuntu1) ...
132s Processing triggers for man-db (2.13.0-1) ...
133s Reading package lists...
133s Building dependency tree...
133s Reading state information...
133s Solving dependencies...
133s The following packages will be REMOVED:
133s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
133s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
133s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
133s   linux-tools-6.11.0-8-generic*
133s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
133s After this operation, 167 MB disk space will be freed.
133s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
133s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
133s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
133s Removing libpython3.12t64:s390x (3.12.9-1) ...
133s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
133s Removing libnsl2:s390x (1.3.0-3build3) ...
133s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
134s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
134s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
134s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
134s Processing triggers for libc-bin (2.41-1ubuntu1) ...
134s (Reading database ... 
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(Reading database ... 85%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
134s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
134s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
135s autopkgtest [17:42:17]: upgrading testbed (apt dist-upgrade and autopurge)
135s Reading package lists...
135s Building dependency tree...
135s Reading state information...
135s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
135s Starting 2 pkgProblemResolver with broken count: 0
135s Done
135s Entering ResolveByKeep
135s 
135s Calculating upgrade...
136s The following packages will be upgraded:
136s   libc-bin libc-dev-bin libc6 libc6-dev locales
136s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
136s Need to get 9512 kB of archives.
136s After this operation, 8192 B of additional disk space will be used.
136s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
137s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
137s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
139s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
140s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
142s Preconfiguring packages ...
142s Fetched 9512 kB in 7s (1415 kB/s)
143s (Reading database ... 
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
143s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
143s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
143s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
143s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
143s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
143s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
143s Setting up libc6:s390x (2.41-1ubuntu2) ...
143s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
143s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
143s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
143s Setting up libc-bin (2.41-1ubuntu2) ...
143s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
143s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
143s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
143s Setting up locales (2.41-1ubuntu2) ...
143s Generating locales (this might take a while)...
144s   en_US.UTF-8... done
144s Generation complete.
144s Setting up libc-dev-bin (2.41-1ubuntu2) ...
144s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
144s Processing triggers for man-db (2.13.0-1) ...
145s Processing triggers for systemd (257.3-1ubuntu3) ...
146s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s Starting pkgProblemResolver with broken count: 0
146s Starting 2 pkgProblemResolver with broken count: 0
146s Done
146s Solving dependencies...
146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
146s autopkgtest [17:42:28]: rebooting testbed after setup commands that affected boot
168s autopkgtest [17:42:50]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
171s autopkgtest [17:42:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-affxparser
173s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affxparser 1.78.0-2 (dsc) [2123 B]
173s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affxparser 1.78.0-2 (tar) [819 kB]
173s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-affxparser 1.78.0-2 (diff) [3400 B]
173s gpgv: Signature made Sat Jan 11 13:59:36 2025 UTC
173s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
173s gpgv:                issuer "crusoe@debian.org"
173s gpgv: Can't check signature: No public key
173s dpkg-source: warning: cannot verify inline signature for ./r-bioc-affxparser_1.78.0-2.dsc: no acceptable signature found
173s autopkgtest [17:42:55]: testing package r-bioc-affxparser version 1.78.0-2
174s autopkgtest [17:42:56]: build not needed
181s autopkgtest [17:43:03]: test pkg-r-autopkgtest: preparing testbed
181s Reading package lists...
181s Building dependency tree...
181s Reading state information...
181s Starting pkgProblemResolver with broken count: 0
181s Starting 2 pkgProblemResolver with broken count: 0
181s Done
182s The following NEW packages will be installed:
182s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
182s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
182s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
182s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
182s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
182s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
182s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
182s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
182s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
182s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
182s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
182s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
182s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
182s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
182s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
182s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
182s   r-base-core r-base-dev r-bioc-affxparser r-bioc-biocgenerics
182s   r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils unzip x11-common xdg-utils zip
182s   zlib1g-dev
182s 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
182s Need to get 127 MB of archives.
182s After this operation, 368 MB of additional disk space will be used.
182s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
182s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
183s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
188s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
188s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
188s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
188s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
188s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
188s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
188s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
190s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
191s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
192s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
196s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
196s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
196s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
196s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
196s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
197s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
197s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
197s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
197s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
197s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
197s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
197s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
197s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
197s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
197s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
197s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
197s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
197s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
197s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
197s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
197s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
197s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
197s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
198s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
198s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
198s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
198s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
198s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
198s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
198s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
198s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
198s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
198s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
198s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
198s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
198s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
198s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
198s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
198s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
198s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
198s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
198s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
198s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
198s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
198s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
199s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
199s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
199s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
199s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
199s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
199s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
199s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
199s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
199s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
199s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
199s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
199s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
199s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
199s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
199s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
199s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
199s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
199s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
199s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
199s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
199s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
199s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
199s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
199s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
199s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
199s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
199s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
199s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
199s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
199s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
199s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
201s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
201s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
201s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
201s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
201s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
201s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
201s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
201s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affxparser s390x 1.78.0-2 [1035 kB]
201s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.methodss3 all 1.8.2-1 [84.0 kB]
201s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.oo all 1.27.0-1 [979 kB]
201s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r.utils all 2.13.0-1 [1423 kB]
201s Preconfiguring packages ...
201s Fetched 127 MB in 19s (6515 kB/s)
201s Selecting previously unselected package libisl23:s390x.
202s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
202s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
202s Unpacking libisl23:s390x (0.27-1) ...
202s Selecting previously unselected package libmpc3:s390x.
202s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
202s Unpacking libmpc3:s390x (1.3.1-1build2) ...
202s Selecting previously unselected package cpp-14-s390x-linux-gnu.
202s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package cpp-14.
202s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package cpp-s390x-linux-gnu.
202s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package cpp.
202s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking cpp (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package libcc1-0:s390x.
202s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
202s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
202s Selecting previously unselected package libgomp1:s390x.
202s Preparing to unpack .../07-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
202s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
202s Selecting previously unselected package libitm1:s390x.
202s Preparing to unpack .../08-libitm1_15-20250222-0ubuntu1_s390x.deb ...
202s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
202s Selecting previously unselected package libasan8:s390x.
202s Preparing to unpack .../09-libasan8_15-20250222-0ubuntu1_s390x.deb ...
202s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
202s Selecting previously unselected package libubsan1:s390x.
202s Preparing to unpack .../10-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
202s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
202s Selecting previously unselected package libgcc-14-dev:s390x.
202s Preparing to unpack .../11-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package gcc-14-s390x-linux-gnu.
202s Preparing to unpack .../12-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package gcc-14.
202s Preparing to unpack .../13-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package gcc-s390x-linux-gnu.
202s Preparing to unpack .../14-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package gcc.
202s Preparing to unpack .../15-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking gcc (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package libstdc++-14-dev:s390x.
202s Preparing to unpack .../16-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package g++-14-s390x-linux-gnu.
202s Preparing to unpack .../17-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package g++-14.
202s Preparing to unpack .../18-g++-14_14.2.0-17ubuntu3_s390x.deb ...
202s Unpacking g++-14 (14.2.0-17ubuntu3) ...
202s Selecting previously unselected package g++-s390x-linux-gnu.
202s Preparing to unpack .../19-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package g++.
202s Preparing to unpack .../20-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
202s Unpacking g++ (4:14.2.0-1ubuntu1) ...
202s Selecting previously unselected package build-essential.
202s Preparing to unpack .../21-build-essential_12.10ubuntu1_s390x.deb ...
202s Unpacking build-essential (12.10ubuntu1) ...
202s Selecting previously unselected package dctrl-tools.
202s Preparing to unpack .../22-dctrl-tools_2.24-3build3_s390x.deb ...
202s Unpacking dctrl-tools (2.24-3build3) ...
202s Selecting previously unselected package libfreetype6:s390x.
202s Preparing to unpack .../23-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
202s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
202s Selecting previously unselected package fonts-dejavu-mono.
202s Preparing to unpack .../24-fonts-dejavu-mono_2.37-8_all.deb ...
202s Unpacking fonts-dejavu-mono (2.37-8) ...
202s Selecting previously unselected package fonts-dejavu-core.
202s Preparing to unpack .../25-fonts-dejavu-core_2.37-8_all.deb ...
202s Unpacking fonts-dejavu-core (2.37-8) ...
203s Selecting previously unselected package fontconfig-config.
203s Preparing to unpack .../26-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
203s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
203s Selecting previously unselected package libfontconfig1:s390x.
203s Preparing to unpack .../27-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
203s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
203s Selecting previously unselected package fontconfig.
203s Preparing to unpack .../28-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
203s Unpacking fontconfig (2.15.0-2ubuntu1) ...
203s Selecting previously unselected package libgfortran5:s390x.
203s Preparing to unpack .../29-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
203s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
203s Selecting previously unselected package libgfortran-14-dev:s390x.
203s Preparing to unpack .../30-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
203s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
203s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
203s Preparing to unpack .../31-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
203s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
203s Selecting previously unselected package gfortran-14.
203s Preparing to unpack .../32-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
203s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
203s Selecting previously unselected package gfortran-s390x-linux-gnu.
203s Preparing to unpack .../33-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
203s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
203s Selecting previously unselected package gfortran.
203s Preparing to unpack .../34-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
203s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
203s Selecting previously unselected package icu-devtools.
203s Preparing to unpack .../35-icu-devtools_76.1-1ubuntu2_s390x.deb ...
203s Unpacking icu-devtools (76.1-1ubuntu2) ...
203s Selecting previously unselected package libblas3:s390x.
203s Preparing to unpack .../36-libblas3_3.12.1-2_s390x.deb ...
203s Unpacking libblas3:s390x (3.12.1-2) ...
203s Selecting previously unselected package libblas-dev:s390x.
203s Preparing to unpack .../37-libblas-dev_3.12.1-2_s390x.deb ...
203s Unpacking libblas-dev:s390x (3.12.1-2) ...
203s Selecting previously unselected package libbz2-dev:s390x.
203s Preparing to unpack .../38-libbz2-dev_1.0.8-6_s390x.deb ...
203s Unpacking libbz2-dev:s390x (1.0.8-6) ...
203s Selecting previously unselected package libpixman-1-0:s390x.
203s Preparing to unpack .../39-libpixman-1-0_0.44.0-3_s390x.deb ...
203s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
203s Selecting previously unselected package libxcb-render0:s390x.
203s Preparing to unpack .../40-libxcb-render0_1.17.0-2_s390x.deb ...
203s Unpacking libxcb-render0:s390x (1.17.0-2) ...
203s Selecting previously unselected package libxcb-shm0:s390x.
203s Preparing to unpack .../41-libxcb-shm0_1.17.0-2_s390x.deb ...
203s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
203s Selecting previously unselected package libxrender1:s390x.
203s Preparing to unpack .../42-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
203s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
203s Selecting previously unselected package libcairo2:s390x.
203s Preparing to unpack .../43-libcairo2_1.18.2-2_s390x.deb ...
203s Unpacking libcairo2:s390x (1.18.2-2) ...
203s Selecting previously unselected package libdatrie1:s390x.
203s Preparing to unpack .../44-libdatrie1_0.2.13-3build1_s390x.deb ...
203s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
203s Selecting previously unselected package libdeflate0:s390x.
203s Preparing to unpack .../45-libdeflate0_1.23-1_s390x.deb ...
203s Unpacking libdeflate0:s390x (1.23-1) ...
203s Selecting previously unselected package libdeflate-dev:s390x.
203s Preparing to unpack .../46-libdeflate-dev_1.23-1_s390x.deb ...
203s Unpacking libdeflate-dev:s390x (1.23-1) ...
203s Selecting previously unselected package libgraphite2-3:s390x.
203s Preparing to unpack .../47-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
203s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
203s Selecting previously unselected package libharfbuzz0b:s390x.
203s Preparing to unpack .../48-libharfbuzz0b_10.2.0-1_s390x.deb ...
203s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
203s Selecting previously unselected package x11-common.
203s Preparing to unpack .../49-x11-common_1%3a7.7+23ubuntu3_all.deb ...
203s Unpacking x11-common (1:7.7+23ubuntu3) ...
203s Selecting previously unselected package libice6:s390x.
203s Preparing to unpack .../50-libice6_2%3a1.1.1-1_s390x.deb ...
203s Unpacking libice6:s390x (2:1.1.1-1) ...
203s Selecting previously unselected package libicu-dev:s390x.
203s Preparing to unpack .../51-libicu-dev_76.1-1ubuntu2_s390x.deb ...
203s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
203s Selecting previously unselected package libjpeg-turbo8:s390x.
203s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
203s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
203s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
203s Preparing to unpack .../53-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
203s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
203s Selecting previously unselected package libjpeg8:s390x.
203s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_s390x.deb ...
203s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
203s Selecting previously unselected package libjpeg8-dev:s390x.
203s Preparing to unpack .../55-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
203s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
203s Selecting previously unselected package libjpeg-dev:s390x.
203s Preparing to unpack .../56-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
203s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
203s Selecting previously unselected package liblapack3:s390x.
203s Preparing to unpack .../57-liblapack3_3.12.1-2_s390x.deb ...
203s Unpacking liblapack3:s390x (3.12.1-2) ...
203s Selecting previously unselected package liblapack-dev:s390x.
203s Preparing to unpack .../58-liblapack-dev_3.12.1-2_s390x.deb ...
203s Unpacking liblapack-dev:s390x (3.12.1-2) ...
203s Selecting previously unselected package libncurses-dev:s390x.
203s Preparing to unpack .../59-libncurses-dev_6.5+20250216-2_s390x.deb ...
203s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
203s Selecting previously unselected package libthai-data.
203s Preparing to unpack .../60-libthai-data_0.1.29-2build1_all.deb ...
203s Unpacking libthai-data (0.1.29-2build1) ...
203s Selecting previously unselected package libthai0:s390x.
203s Preparing to unpack .../61-libthai0_0.1.29-2build1_s390x.deb ...
203s Unpacking libthai0:s390x (0.1.29-2build1) ...
203s Selecting previously unselected package libpango-1.0-0:s390x.
203s Preparing to unpack .../62-libpango-1.0-0_1.56.2-1_s390x.deb ...
203s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
203s Selecting previously unselected package libpangoft2-1.0-0:s390x.
203s Preparing to unpack .../63-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
203s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
204s Selecting previously unselected package libpangocairo-1.0-0:s390x.
204s Preparing to unpack .../64-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
204s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
204s Selecting previously unselected package libpaper2:s390x.
204s Preparing to unpack .../65-libpaper2_2.2.5-0.3_s390x.deb ...
204s Unpacking libpaper2:s390x (2.2.5-0.3) ...
204s Selecting previously unselected package libpaper-utils.
204s Preparing to unpack .../66-libpaper-utils_2.2.5-0.3_s390x.deb ...
204s Unpacking libpaper-utils (2.2.5-0.3) ...
204s Selecting previously unselected package libpcre2-16-0:s390x.
204s Preparing to unpack .../67-libpcre2-16-0_10.45-1_s390x.deb ...
204s Unpacking libpcre2-16-0:s390x (10.45-1) ...
204s Selecting previously unselected package libpcre2-32-0:s390x.
204s Preparing to unpack .../68-libpcre2-32-0_10.45-1_s390x.deb ...
204s Unpacking libpcre2-32-0:s390x (10.45-1) ...
204s Selecting previously unselected package libpcre2-posix3:s390x.
204s Preparing to unpack .../69-libpcre2-posix3_10.45-1_s390x.deb ...
204s Unpacking libpcre2-posix3:s390x (10.45-1) ...
204s Selecting previously unselected package libpcre2-dev:s390x.
204s Preparing to unpack .../70-libpcre2-dev_10.45-1_s390x.deb ...
204s Unpacking libpcre2-dev:s390x (10.45-1) ...
204s Selecting previously unselected package libpkgconf3:s390x.
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204s Unpacking libpkgconf3:s390x (1.8.1-4) ...
204s Selecting previously unselected package zlib1g-dev:s390x.
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204s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
204s Selecting previously unselected package libpng-dev:s390x.
204s Preparing to unpack .../73-libpng-dev_1.6.47-1_s390x.deb ...
204s Unpacking libpng-dev:s390x (1.6.47-1) ...
204s Selecting previously unselected package libreadline-dev:s390x.
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204s Unpacking libreadline-dev:s390x (8.2-6) ...
204s Selecting previously unselected package libsharpyuv0:s390x.
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204s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
204s Selecting previously unselected package libsm6:s390x.
204s Preparing to unpack .../76-libsm6_2%3a1.2.4-1_s390x.deb ...
204s Unpacking libsm6:s390x (2:1.2.4-1) ...
204s Selecting previously unselected package libtcl8.6:s390x.
204s Preparing to unpack .../77-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
204s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
204s Selecting previously unselected package libjbig0:s390x.
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204s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
204s Selecting previously unselected package libwebp7:s390x.
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204s Unpacking libwebp7:s390x (1.5.0-0.1) ...
204s Selecting previously unselected package libtiff6:s390x.
204s Preparing to unpack .../80-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
204s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
204s Selecting previously unselected package libxft2:s390x.
204s Preparing to unpack .../81-libxft2_2.3.6-1build1_s390x.deb ...
204s Unpacking libxft2:s390x (2.3.6-1build1) ...
204s Selecting previously unselected package libxss1:s390x.
204s Preparing to unpack .../82-libxss1_1%3a1.2.3-1build3_s390x.deb ...
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204s Selecting previously unselected package libtk8.6:s390x.
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204s Unpacking libtk8.6:s390x (8.6.16-1) ...
204s Selecting previously unselected package libxt6t64:s390x.
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204s Selecting previously unselected package zip.
204s Preparing to unpack .../85-zip_3.0-14ubuntu2_s390x.deb ...
204s Unpacking zip (3.0-14ubuntu2) ...
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204s Preparing to unpack .../86-unzip_6.0-28ubuntu6_s390x.deb ...
204s Unpacking unzip (6.0-28ubuntu6) ...
204s Selecting previously unselected package xdg-utils.
204s Preparing to unpack .../87-xdg-utils_1.2.1-2ubuntu1_all.deb ...
204s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
204s Selecting previously unselected package r-base-core.
204s Preparing to unpack .../88-r-base-core_4.4.3-1_s390x.deb ...
204s Unpacking r-base-core (4.4.3-1) ...
204s Selecting previously unselected package liblzma-dev:s390x.
204s Preparing to unpack .../89-liblzma-dev_5.6.4-1_s390x.deb ...
204s Unpacking liblzma-dev:s390x (5.6.4-1) ...
204s Selecting previously unselected package pkgconf-bin.
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204s Unpacking pkgconf-bin (1.8.1-4) ...
204s Selecting previously unselected package pkgconf:s390x.
204s Preparing to unpack .../91-pkgconf_1.8.1-4_s390x.deb ...
204s Unpacking pkgconf:s390x (1.8.1-4) ...
204s Selecting previously unselected package libtirpc-dev:s390x.
204s Preparing to unpack .../92-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
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204s Unpacking r-base-dev (4.4.3-1) ...
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204s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
204s Selecting previously unselected package r-bioc-biocgenerics.
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204s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
204s Selecting previously unselected package r-bioc-affxparser.
204s Preparing to unpack .../96-r-bioc-affxparser_1.78.0-2_s390x.deb ...
204s Unpacking r-bioc-affxparser (1.78.0-2) ...
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204s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
204s Setting up libpixman-1-0:s390x (0.44.0-3) ...
204s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
204s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
204s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
204s Setting up libdatrie1:s390x (0.2.13-3build1) ...
204s Setting up libxcb-render0:s390x (1.17.0-2) ...
204s Setting up unzip (6.0-28ubuntu6) ...
204s Setting up x11-common (1:7.7+23ubuntu3) ...
204s Setting up libdeflate0:s390x (1.23-1) ...
204s Setting up libxcb-shm0:s390x (1.17.0-2) ...
204s Setting up libreadline-dev:s390x (8.2-6) ...
204s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
204s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
204s Setting up libpcre2-16-0:s390x (10.45-1) ...
204s Setting up zip (3.0-14ubuntu2) ...
204s Setting up libpcre2-32-0:s390x (10.45-1) ...
204s Setting up libblas3:s390x (3.12.1-2) ...
204s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
204s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
204s Setting up libpkgconf3:s390x (1.8.1-4) ...
204s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
204s Setting up fonts-dejavu-mono (2.37-8) ...
204s Setting up libmpc3:s390x (1.3.1-1build2) ...
204s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
204s Setting up icu-devtools (76.1-1ubuntu2) ...
204s Setting up fonts-dejavu-core (2.37-8) ...
204s Setting up pkgconf-bin (1.8.1-4) ...
204s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
204s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
204s Setting up libwebp7:s390x (1.5.0-0.1) ...
204s Setting up liblzma-dev:s390x (5.6.4-1) ...
204s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
204s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
204s Setting up libpcre2-posix3:s390x (10.45-1) ...
204s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
204s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
205s Setting up libthai-data (0.1.29-2build1) ...
205s Setting up libxss1:s390x (1:1.2.3-1build3) ...
205s Setting up libpaper2:s390x (2.2.5-0.3) ...
205s Setting up libisl23:s390x (0.27-1) ...
205s Setting up libdeflate-dev:s390x (1.23-1) ...
205s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
205s Setting up xdg-utils (1.2.1-2ubuntu1) ...
205s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
205s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
205s Setting up libblas-dev:s390x (3.12.1-2) ...
205s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
205s Setting up dctrl-tools (2.24-3build3) ...
205s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
205s Setting up libbz2-dev:s390x (1.0.8-6) ...
205s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
205s Setting up libice6:s390x (2:1.1.1-1) ...
205s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
205s Setting up liblapack3:s390x (3.12.1-2) ...
205s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
205s Setting up libpcre2-dev:s390x (10.45-1) ...
205s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
205s Setting up libpng-dev:s390x (1.6.47-1) ...
205s Setting up libpaper-utils (2.2.5-0.3) ...
205s Setting up pkgconf:s390x (1.8.1-4) ...
205s Setting up libthai0:s390x (0.1.29-2build1) ...
205s Setting up liblapack-dev:s390x (3.12.1-2) ...
205s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
205s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
205s Setting up cpp-14 (14.2.0-17ubuntu3) ...
205s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
205s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
205s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
205s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
205s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
205s Setting up libsm6:s390x (2:1.2.4-1) ...
205s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
205s Setting up fontconfig (2.15.0-2ubuntu1) ...
207s Regenerating fonts cache... done.
207s Setting up libxft2:s390x (2.3.6-1build1) ...
207s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
207s Setting up libtk8.6:s390x (8.6.16-1) ...
207s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
207s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
207s Setting up libcairo2:s390x (1.18.2-2) ...
207s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
207s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
207s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
207s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
207s Setting up cpp (4:14.2.0-1ubuntu1) ...
207s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
207s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
207s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
207s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
207s Setting up gcc-14 (14.2.0-17ubuntu3) ...
207s Setting up r-base-core (4.4.3-1) ...
207s Creating config file /etc/R/Renviron with new version
207s Setting up g++-14 (14.2.0-17ubuntu3) ...
207s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
207s Setting up r-bioc-biocgenerics (0.52.0-2) ...
207s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
207s Setting up gcc (4:14.2.0-1ubuntu1) ...
207s Setting up r-bioc-affxparser (1.78.0-2) ...
207s Setting up r-cran-r.methodss3 (1.8.2-1) ...
207s Setting up g++ (4:14.2.0-1ubuntu1) ...
207s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
207s Setting up build-essential (12.10ubuntu1) ...
207s Setting up r-cran-r.oo (1.27.0-1) ...
207s Setting up gfortran (4:14.2.0-1ubuntu1) ...
207s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
207s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
207s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
207s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
207s Setting up r-cran-r.utils (2.13.0-1) ...
207s Setting up r-base-dev (4.4.3-1) ...
207s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
207s Processing triggers for libc-bin (2.41-1ubuntu2) ...
207s Processing triggers for man-db (2.13.0-1) ...
208s Processing triggers for install-info (7.1.1-1) ...
209s autopkgtest [17:43:31]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
209s autopkgtest [17:43:31]: test pkg-r-autopkgtest: [-----------------------
209s Test: Try to load the R library affxparser
209s 
209s R version 4.4.3 (2025-02-28) -- "Trophy Case"
209s Copyright (C) 2025 The R Foundation for Statistical Computing
209s Platform: s390x-ibm-linux-gnu
209s 
209s R is free software and comes with ABSOLUTELY NO WARRANTY.
209s You are welcome to redistribute it under certain conditions.
209s Type 'license()' or 'licence()' for distribution details.
209s 
209s R is a collaborative project with many contributors.
209s Type 'contributors()' for more information and
209s 'citation()' on how to cite R or R packages in publications.
209s 
209s Type 'demo()' for some demos, 'help()' for on-line help, or
209s 'help.start()' for an HTML browser interface to help.
209s Type 'q()' to quit R.
209s 
210s > library('affxparser')
210s > 
210s > 
210s Other tests are currently unsupported!
210s They will be progressively added.
210s autopkgtest [17:43:32]: test pkg-r-autopkgtest: -----------------------]
210s autopkgtest [17:43:32]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
210s pkg-r-autopkgtest    PASS
211s autopkgtest [17:43:33]: @@@@@@@@@@@@@@@@@@@@ summary
211s pkg-r-autopkgtest    PASS
229s nova [W] Using flock in prodstack6-s390x
229s flock: timeout while waiting to get lock
229s Creating nova instance adt-plucky-s390x-r-bioc-affxparser-20250315-174002-juju-7f2275-prod-proposed-migration-environment-2-655e94d2-cec5-4481-8a15-b6c8342cee3e from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
229s nova [W] Timed out waiting for 59f2a31c-7973-4b4a-a51a-46ab889d87a4 to get deleted.