0s autopkgtest [16:03:49]: starting date and time: 2024-11-13 16:03:49+0000 0s autopkgtest [16:03:49]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:03:49]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.em3ymkrp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade q2-taxa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-18.secgroup --name adt-plucky-s390x-q2-taxa-20241113-160349-juju-7f2275-prod-proposed-migration-environment-20-5ca2f919-dfaf-4147-a0d1-a050f71296ea --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 102s autopkgtest [16:05:30]: testbed dpkg architecture: s390x 102s autopkgtest [16:05:31]: testbed apt version: 2.9.8 102s autopkgtest [16:05:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 103s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 103s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 103s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [950 kB] 103s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 103s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [110 kB] 103s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [636 kB] 103s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.8 kB] 103s Fetched 1916 kB in 1s (2279 kB/s) 103s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 105s The following NEW packages will be installed: 105s python3.13-gdbm 105s The following packages will be upgraded: 105s libgnutls30t64 libgpgme11t64 libjson-glib-1.0-0 libjson-glib-1.0-common 105s libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal 106s 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 1285 kB of archives. 106s After this operation, 103 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls30t64 s390x 3.8.8-2ubuntu1 [950 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 106s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 106s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 106s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-0 s390x 1.10.0+ds-3 [67.5 kB] 106s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libutempter0 s390x 1.2.1-4 [9708 B] 106s Fetched 1285 kB in 1s (2321 kB/s) 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 106s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 106s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 106s Setting up python3-minimal (3.12.7-1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 107s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 107s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 107s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_s390x.deb ... 107s Unpacking libgnutls30t64:s390x (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 107s Setting up libgnutls30t64:s390x (3.8.8-2ubuntu1) ... 107s Selecting previously unselected package python3.13-gdbm. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 107s Preparing to unpack .../0-python3.13-gdbm_3.13.0-2_s390x.deb ... 107s Unpacking python3.13-gdbm (3.13.0-2) ... 107s Preparing to unpack .../1-python3-gdbm_3.12.7-1_s390x.deb ... 107s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 107s Preparing to unpack .../2-libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 107s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 107s Preparing to unpack .../3-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 107s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 107s Preparing to unpack .../4-libjson-glib-1.0-0_1.10.0+ds-3_s390x.deb ... 107s Unpacking libjson-glib-1.0-0:s390x (1.10.0+ds-3) over (1.10.0+ds-2) ... 107s Preparing to unpack .../5-libutempter0_1.2.1-4_s390x.deb ... 107s Unpacking libutempter0:s390x (1.2.1-4) over (1.2.1-3build1) ... 107s Setting up libutempter0:s390x (1.2.1-4) ... 107s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 107s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 107s Setting up python3.13-gdbm (3.13.0-2) ... 107s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 107s Setting up python3 (3.12.7-1) ... 107s Setting up libjson-glib-1.0-0:s390x (1.10.0+ds-3) ... 107s Setting up python3-gdbm:s390x (3.12.7-1) ... 107s Processing triggers for man-db (2.12.1-3) ... 107s Processing triggers for libc-bin (2.40-1ubuntu3) ... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 108s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 108s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 108s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 109s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [16:05:41]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 112s autopkgtest [16:05:41]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-taxa 114s Get:1 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (dsc) [2380 B] 114s Get:2 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (tar) [234 kB] 114s Get:3 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (diff) [7576 B] 114s gpgv: Signature made Thu Jul 11 06:38:28 2024 UTC 114s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 114s gpgv: Can't check signature: No public key 114s dpkg-source: warning: cannot verify inline signature for ./q2-taxa_2024.5.0+dfsg-1build1.dsc: no acceptable signature found 114s autopkgtest [16:05:43]: testing package q2-taxa version 2024.5.0+dfsg-1build1 114s autopkgtest [16:05:43]: build not needed 115s autopkgtest [16:05:44]: test run-unit-test: preparing testbed 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Starting pkgProblemResolver with broken count: 1 117s Starting 2 pkgProblemResolver with broken count: 1 117s Investigating (0) q2-types:s390x < none -> 2024.5.0-1ubuntu2 @un puN Ib > 117s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 117s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 117s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 117s Re-Instated libaec0:s390x 117s Re-Instated libsz2:s390x 117s Re-Instated libhdf5-103-1t64:s390x 117s Re-Instated libhdf5-hl-100t64:s390x 117s Re-Instated liblzf1:s390x 117s Re-Instated python3-h5py-serial:s390x 117s Re-Instated python3-h5py:s390x 117s Re-Instated liblbfgsb0:s390x 117s Re-Instated python3-scipy:s390x 117s Re-Instated python3-biom-format:s390x 117s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 117s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 117s Re-Instated libyajl2:s390x 117s Re-Instated python3-ijson:s390x 117s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.28+ds-3 @un uH > 117s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 117s Re-Instated libopenblas0-pthread:s390x 117s Re-Instated libopenblas0:s390x 117s Done 117s Some packages could not be installed. This may mean that you have 117s requested an impossible situation or if you are using the unstable 117s distribution that some required packages have not yet been created 117s or been moved out of Incoming. 117s The following information may help to resolve the situation: 117s 117s The following packages have unmet dependencies: 117s q2-types : Depends: python3-skbio but it is not installable 117s E: Unable to correct problems, you have held broken packages. 117s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Starting pkgProblemResolver with broken count: 1 118s Starting 2 pkgProblemResolver with broken count: 1 118s Investigating (0) q2-types:s390x < none -> 2024.5.0-1ubuntu2 @un puN Ib > 118s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 118s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 118s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 118s Re-Instated libaec0:s390x 118s Re-Instated libsz2:s390x 118s Re-Instated libhdf5-103-1t64:s390x 118s Re-Instated libhdf5-hl-100t64:s390x 118s Re-Instated liblzf1:s390x 118s Re-Instated python3-h5py-serial:s390x 118s Re-Instated python3-h5py:s390x 118s Re-Instated liblbfgsb0:s390x 118s Re-Instated python3-scipy:s390x 118s Re-Instated python3-biom-format:s390x 118s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 118s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 118s Re-Instated libyajl2:s390x 118s Re-Instated python3-ijson:s390x 118s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.28+ds-3 @un uH > 118s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 118s Re-Instated libopenblas0-pthread:s390x 118s Re-Instated libopenblas0:s390x 118s Done 118s Some packages could not be installed. This may mean that you have 118s requested an impossible situation or if you are using the unstable 118s distribution that some required packages have not yet been created 118s or been moved out of Incoming. 118s The following information may help to resolve the situation: 118s 118s The following packages have unmet dependencies: 118s q2-types : Depends: python3-skbio but it is not installable 118s E: Unable to correct problems, you have held broken packages. 118s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 1 119s Starting 2 pkgProblemResolver with broken count: 1 119s Investigating (0) q2-types:s390x < none -> 2024.5.0-1ubuntu2 @un puN Ib > 119s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 119s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 119s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 119s Re-Instated libaec0:s390x 119s Re-Instated libsz2:s390x 119s Re-Instated libhdf5-103-1t64:s390x 119s Re-Instated libhdf5-hl-100t64:s390x 119s Re-Instated liblzf1:s390x 119s Re-Instated python3-h5py-serial:s390x 119s Re-Instated python3-h5py:s390x 119s Re-Instated liblbfgsb0:s390x 119s Re-Instated python3-scipy:s390x 119s Re-Instated python3-biom-format:s390x 119s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 119s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 119s Re-Instated libyajl2:s390x 119s Re-Instated python3-ijson:s390x 119s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.28+ds-3 @un uH > 119s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 119s Re-Instated libopenblas0-pthread:s390x 119s Re-Instated libopenblas0:s390x 119s Done 119s Some packages could not be installed. This may mean that you have 119s requested an impossible situation or if you are using the unstable 119s distribution that some required packages have not yet been created 119s or been moved out of Incoming. 119s The following information may help to resolve the situation: 119s 119s The following packages have unmet dependencies: 119s q2-types : Depends: python3-skbio but it is not installable 119s E: Unable to correct problems, you have held broken packages. 119s autopkgtest [16:05:48]: @@@@@@@@@@@@@@@@@@@@ summary 119s run-unit-test SKIP installation fails and skip-not-installable set 119s run-unit-test SKIP installation fails and skip-not-installable set 131s nova [W] Using flock in prodstack6-s390x 131s flock: timeout while waiting to get lock 131s Creating nova instance adt-plucky-s390x-q2-taxa-20241113-160349-juju-7f2275-prod-proposed-migration-environment-20-5ca2f919-dfaf-4147-a0d1-a050f71296ea from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...