0s autopkgtest [16:03:25]: starting date and time: 2024-11-13 16:03:25+0000 0s autopkgtest [16:03:25]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:03:25]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mlkg7kt9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade q2-emperor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-26.secgroup --name adt-plucky-s390x-q2-emperor-20241113-160325-juju-7f2275-prod-proposed-migration-environment-20-3fcd3964-3253-475d-bdaf-48bba2b0a2e7 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 105s autopkgtest [16:05:10]: testbed dpkg architecture: s390x 105s autopkgtest [16:05:10]: testbed apt version: 2.9.8 105s autopkgtest [16:05:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [950 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 106s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [110 kB] 106s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [636 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.8 kB] 106s Fetched 1916 kB in 1s (2367 kB/s) 106s Reading package lists... 108s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 109s The following NEW packages will be installed: 109s python3.13-gdbm 109s The following packages will be upgraded: 109s libgnutls30t64 libgpgme11t64 libjson-glib-1.0-0 libjson-glib-1.0-common 109s libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal 109s 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 1285 kB of archives. 109s After this operation, 103 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls30t64 s390x 3.8.8-2ubuntu1 [950 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 109s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 109s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 109s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 109s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-0 s390x 1.10.0+ds-3 [67.5 kB] 109s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libutempter0 s390x 1.2.1-4 [9708 B] 110s Fetched 1285 kB in 1s (2071 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 110s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 110s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Setting up python3-minimal (3.12.7-1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 110s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 110s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 110s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_s390x.deb ... 110s Unpacking libgnutls30t64:s390x (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 110s Setting up libgnutls30t64:s390x (3.8.8-2ubuntu1) ... 110s Selecting previously unselected package python3.13-gdbm. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 110s Preparing to unpack .../0-python3.13-gdbm_3.13.0-2_s390x.deb ... 110s Unpacking python3.13-gdbm (3.13.0-2) ... 110s Preparing to unpack .../1-python3-gdbm_3.12.7-1_s390x.deb ... 110s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 110s Preparing to unpack .../2-libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 110s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 110s Preparing to unpack .../3-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 110s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 110s Preparing to unpack .../4-libjson-glib-1.0-0_1.10.0+ds-3_s390x.deb ... 110s Unpacking libjson-glib-1.0-0:s390x (1.10.0+ds-3) over (1.10.0+ds-2) ... 110s Preparing to unpack .../5-libutempter0_1.2.1-4_s390x.deb ... 110s Unpacking libutempter0:s390x (1.2.1-4) over (1.2.1-3build1) ... 110s Setting up libutempter0:s390x (1.2.1-4) ... 110s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 110s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 110s Setting up python3.13-gdbm (3.13.0-2) ... 110s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 110s Setting up python3 (3.12.7-1) ... 110s Setting up libjson-glib-1.0-0:s390x (1.10.0+ds-3) ... 110s Setting up python3-gdbm:s390x (3.12.7-1) ... 110s Processing triggers for man-db (2.12.1-3) ... 111s Processing triggers for libc-bin (2.40-1ubuntu3) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 112s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 112s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 113s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [16:05:21]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 116s autopkgtest [16:05:21]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-emperor 118s Get:1 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (dsc) [2309 B] 118s Get:2 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (tar) [244 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (diff) [9132 B] 118s gpgv: Signature made Sun Jun 30 07:17:02 2024 UTC 118s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 118s gpgv: Can't check signature: No public key 118s dpkg-source: warning: cannot verify inline signature for ./q2-emperor_2024.5.0-2.dsc: no acceptable signature found 118s autopkgtest [16:05:23]: testing package q2-emperor version 2024.5.0-2 118s autopkgtest [16:05:23]: build not needed 119s autopkgtest [16:05:24]: test run-unit-test: preparing testbed 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Starting pkgProblemResolver with broken count: 2 120s Starting 2 pkgProblemResolver with broken count: 2 120s Investigating (0) q2-types:s390x < none -> 2024.5.0-1ubuntu2 @un puN Ib > 120s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 120s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 120s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 120s Re-Instated libaec0:s390x 120s Re-Instated libsz2:s390x 120s Re-Instated libhdf5-103-1t64:s390x 120s Re-Instated libhdf5-hl-100t64:s390x 120s Re-Instated liblzf1:s390x 120s Re-Instated python3-h5py-serial:s390x 120s Re-Instated python3-h5py:s390x 120s Re-Instated liblbfgsb0:s390x 120s Re-Instated python3-scipy:s390x 120s Re-Instated python3-biom-format:s390x 120s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 120s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 120s Re-Instated libyajl2:s390x 120s Re-Instated python3-ijson:s390x 120s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.28+ds-3 @un uH > 120s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 120s Re-Instated libopenblas0-pthread:s390x 120s Re-Instated libopenblas0:s390x 120s Investigating (0) python3-emperor:s390x < none -> 1.0.3+ds-9.1 @un puN Ib > 120s Broken python3-emperor:s390x Depends on python3-skbio:s390x < none @un H > (>= 0.5.8-2exp1~) 120s Broken python3-emperor:s390x Depends on libjs-jquery-ui:s390x < none | 1.13.2+dfsg-1 @un uH > 120s Considering libjs-jquery-ui:s390x 1 as a solution to python3-emperor:s390x 0 120s Re-Instated libjs-jquery-ui:s390x 120s Done 120s Some packages could not be installed. This may mean that you have 120s requested an impossible situation or if you are using the unstable 120s distribution that some required packages have not yet been created 120s or been moved out of Incoming. 120s The following information may help to resolve the situation: 120s 120s The following packages have unmet dependencies: 120s python3-emperor : Depends: python3-skbio (>= 0.5.8-2exp1~) but it is not installable 120s q2-types : Depends: python3-skbio but it is not installable 120s E: Unable to correct problems, you have held broken packages. 120s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Starting pkgProblemResolver with broken count: 2 121s Starting 2 pkgProblemResolver with broken count: 2 121s Investigating (0) q2-types:s390x < none -> 2024.5.0-1ubuntu2 @un puN Ib > 121s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 121s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 121s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 121s Re-Instated libaec0:s390x 121s Re-Instated libsz2:s390x 121s Re-Instated libhdf5-103-1t64:s390x 121s Re-Instated libhdf5-hl-100t64:s390x 121s Re-Instated liblzf1:s390x 121s Re-Instated python3-h5py-serial:s390x 121s Re-Instated python3-h5py:s390x 121s Re-Instated liblbfgsb0:s390x 121s Re-Instated python3-scipy:s390x 121s Re-Instated python3-biom-format:s390x 121s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 121s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 121s Re-Instated libyajl2:s390x 121s Re-Instated python3-ijson:s390x 121s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.28+ds-3 @un uH > 121s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 121s Re-Instated libopenblas0-pthread:s390x 121s Re-Instated libopenblas0:s390x 121s Investigating (0) python3-emperor:s390x < none -> 1.0.3+ds-9.1 @un puN Ib > 121s Broken python3-emperor:s390x Depends on python3-skbio:s390x < none @un H > (>= 0.5.8-2exp1~) 121s Broken python3-emperor:s390x Depends on libjs-jquery-ui:s390x < none | 1.13.2+dfsg-1 @un uH > 121s Considering libjs-jquery-ui:s390x 1 as a solution to python3-emperor:s390x 0 121s Re-Instated libjs-jquery-ui:s390x 121s Done 121s Some packages could not be installed. This may mean that you have 121s requested an impossible situation or if you are using the unstable 121s distribution that some required packages have not yet been created 121s or been moved out of Incoming. 121s The following information may help to resolve the situation: 121s 121s The following packages have unmet dependencies: 121s python3-emperor : Depends: python3-skbio (>= 0.5.8-2exp1~) but it is not installable 121s q2-types : Depends: python3-skbio but it is not installable 121s E: Unable to correct problems, you have held broken packages. 121s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Starting pkgProblemResolver with broken count: 2 122s Starting 2 pkgProblemResolver with broken count: 2 122s Investigating (0) q2-types:s390x < none -> 2024.5.0-1ubuntu2 @un puN Ib > 122s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 122s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 122s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 122s Re-Instated libaec0:s390x 122s Re-Instated libsz2:s390x 122s Re-Instated libhdf5-103-1t64:s390x 122s Re-Instated libhdf5-hl-100t64:s390x 122s Re-Instated liblzf1:s390x 122s Re-Instated python3-h5py-serial:s390x 122s Re-Instated python3-h5py:s390x 122s Re-Instated liblbfgsb0:s390x 122s Re-Instated python3-scipy:s390x 122s Re-Instated python3-biom-format:s390x 122s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 122s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 122s Re-Instated libyajl2:s390x 122s Re-Instated python3-ijson:s390x 122s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.28+ds-3 @un uH > 122s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 122s Re-Instated libopenblas0-pthread:s390x 122s Re-Instated libopenblas0:s390x 122s Investigating (0) python3-emperor:s390x < none -> 1.0.3+ds-9.1 @un puN Ib > 122s Broken python3-emperor:s390x Depends on python3-skbio:s390x < none @un H > (>= 0.5.8-2exp1~) 122s Broken python3-emperor:s390x Depends on libjs-jquery-ui:s390x < none | 1.13.2+dfsg-1 @un uH > 122s Considering libjs-jquery-ui:s390x 1 as a solution to python3-emperor:s390x 0 122s Re-Instated libjs-jquery-ui:s390x 122s Done 122s Some packages could not be installed. This may mean that you have 122s requested an impossible situation or if you are using the unstable 122s distribution that some required packages have not yet been created 122s or been moved out of Incoming. 122s The following information may help to resolve the situation: 122s 122s The following packages have unmet dependencies: 122s python3-emperor : Depends: python3-skbio (>= 0.5.8-2exp1~) but it is not installable 122s q2-types : Depends: python3-skbio but it is not installable 122s E: Unable to correct problems, you have held broken packages. 122s run-unit-test SKIP installation fails and skip-not-installable set 122s autopkgtest [16:05:27]: @@@@@@@@@@@@@@@@@@@@ summary 122s run-unit-test SKIP installation fails and skip-not-installable set 133s nova [W] Using flock in prodstack6-s390x 133s Creating nova instance adt-plucky-s390x-q2-emperor-20241113-160325-juju-7f2275-prod-proposed-migration-environment-20-3fcd3964-3253-475d-bdaf-48bba2b0a2e7 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...