0s autopkgtest [09:55:46]: starting date and time: 2024-10-30 09:55:46+0000 0s autopkgtest [09:55:46]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [09:55:46]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xtml4h2c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade python-weblogo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/75.2.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-30.secgroup --name adt-plucky-s390x-python-weblogo-20241030-095546-juju-7f2275-prod-proposed-migration-environment-15-1d95954f-3826-409b-b2b8-840d481be3f3 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 104s autopkgtest [09:57:30]: testbed dpkg architecture: s390x 104s autopkgtest [09:57:30]: testbed apt version: 2.9.8 104s autopkgtest [09:57:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 105s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [212 kB] 105s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [28.1 kB] 105s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [2840 B] 105s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [42.1 kB] 105s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [234 kB] 105s Fetched 600 kB in 1s (1026 kB/s) 105s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Calculating upgrade... 107s The following packages were automatically installed and are no longer required: 107s libperl5.38t64 perl-modules-5.38 107s Use 'sudo apt autoremove' to remove them. 107s The following NEW packages will be installed: 107s libperl5.40 perl-modules-5.40 python3-jaraco.text 107s The following packages will be upgraded: 107s info install-info libkeyutils1 liblocale-gettext-perl libtext-charwidth-perl 107s libtext-iconv-perl perl perl-base python3-pkg-resources python3-setuptools 107s vim-common vim-tiny xxd 107s 13 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 12.6 MB of archives. 107s After this operation, 50.3 MB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x perl-modules-5.40 all 5.40.0-6 [3214 kB] 108s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libperl5.40 s390x 5.40.0-6 [4984 kB] 108s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x perl s390x 5.40.0-6 [262 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x perl-base s390x 5.40.0-6 [1971 kB] 108s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x liblocale-gettext-perl s390x 1.07-7build1 [15.9 kB] 108s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libtext-iconv-perl s390x 1.7-8build4 [13.8 kB] 108s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libtext-charwidth-perl s390x 0.04-11build4 [9646 B] 108s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x install-info s390x 7.1.1-1 [64.8 kB] 108s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libkeyutils1 s390x 1.6.3-4ubuntu2 [9960 B] 108s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x vim-tiny s390x 2:9.1.0777-1ubuntu1 [664 kB] 108s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 108s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x xxd s390x 2:9.1.0777-1ubuntu1 [66.5 kB] 108s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x info s390x 7.1.1-1 [149 kB] 108s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jaraco.text all 4.0.0-1 [11.5 kB] 108s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-pkg-resources all 75.2.0-1 [134 kB] 108s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-setuptools all 75.2.0-1 [657 kB] 108s Fetched 12.6 MB in 1s (12.2 MB/s) 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55329 files and directories currently installed.) 109s Preparing to unpack .../perl_5.40.0-6_s390x.deb ... 109s Unpacking perl (5.40.0-6) over (5.38.2-5) ... 109s Selecting previously unselected package perl-modules-5.40. 109s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... 109s Unpacking perl-modules-5.40 (5.40.0-6) ... 109s Selecting previously unselected package libperl5.40:s390x. 109s Preparing to unpack .../libperl5.40_5.40.0-6_s390x.deb ... 109s Unpacking libperl5.40:s390x (5.40.0-6) ... 109s Preparing to unpack .../perl-base_5.40.0-6_s390x.deb ... 109s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... 109s Setting up perl-base (5.40.0-6) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57408 files and directories currently installed.) 109s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_s390x.deb ... 109s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 109s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_s390x.deb ... 109s Unpacking libtext-iconv-perl:s390x (1.7-8build4) over (1.7-8build3) ... 109s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_s390x.deb ... 109s Unpacking libtext-charwidth-perl:s390x (0.04-11build4) over (0.04-11build3) ... 109s Preparing to unpack .../install-info_7.1.1-1_s390x.deb ... 109s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 109s Setting up install-info (7.1.1-1) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57408 files and directories currently installed.) 109s Preparing to unpack .../0-libkeyutils1_1.6.3-4ubuntu2_s390x.deb ... 109s Unpacking libkeyutils1:s390x (1.6.3-4ubuntu2) over (1.6.3-3build1) ... 109s Preparing to unpack .../1-vim-tiny_2%3a9.1.0777-1ubuntu1_s390x.deb ... 109s Unpacking vim-tiny (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 109s Preparing to unpack .../2-vim-common_2%3a9.1.0777-1ubuntu1_all.deb ... 109s Unpacking vim-common (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 109s Preparing to unpack .../3-xxd_2%3a9.1.0777-1ubuntu1_s390x.deb ... 109s Unpacking xxd (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 109s Preparing to unpack .../4-info_7.1.1-1_s390x.deb ... 109s Unpacking info (7.1.1-1) over (7.1-3build2) ... 109s Selecting previously unselected package python3-jaraco.text. 109s Preparing to unpack .../5-python3-jaraco.text_4.0.0-1_all.deb ... 109s Unpacking python3-jaraco.text (4.0.0-1) ... 109s Preparing to unpack .../6-python3-pkg-resources_75.2.0-1_all.deb ... 109s Unpacking python3-pkg-resources (75.2.0-1) over (74.1.2-1) ... 109s Preparing to unpack .../7-python3-setuptools_75.2.0-1_all.deb ... 109s Unpacking python3-setuptools (75.2.0-1) over (74.1.2-1) ... 109s Setting up python3-pkg-resources (75.2.0-1) ... 110s Setting up libtext-iconv-perl:s390x (1.7-8build4) ... 110s Setting up libtext-charwidth-perl:s390x (0.04-11build4) ... 110s Setting up libkeyutils1:s390x (1.6.3-4ubuntu2) ... 110s Setting up xxd (2:9.1.0777-1ubuntu1) ... 110s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 110s Installing new version of config file /etc/vim/vimrc ... 110s Setting up python3-jaraco.text (4.0.0-1) ... 110s Setting up perl-modules-5.40 (5.40.0-6) ... 110s Setting up info (7.1.1-1) ... 110s Setting up liblocale-gettext-perl (1.07-7build1) ... 110s Setting up python3-setuptools (75.2.0-1) ... 110s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 110s Setting up libperl5.40:s390x (5.40.0-6) ... 110s Setting up perl (5.40.0-6) ... 110s Processing triggers for libc-bin (2.40-1ubuntu3) ... 110s Processing triggers for man-db (2.12.1-3) ... 111s Processing triggers for install-info (7.1.1-1) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s The following packages will be REMOVED: 112s libperl5.38t64* perl-modules-5.38* 112s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 112s After this operation, 49.5 MB disk space will be freed. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57417 files and directories currently installed.) 112s Removing libperl5.38t64:s390x (5.38.2-5) ... 112s Removing perl-modules-5.38 (5.38.2-5) ... 112s Processing triggers for man-db (2.12.1-3) ... 112s Processing triggers for libc-bin (2.40-1ubuntu3) ... 113s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s Calculating upgrade... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s autopkgtest [09:57:43]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 117s autopkgtest [09:57:43]: @@@@@@@@@@@@@@@@@@@@ apt-source python-weblogo 118s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-weblogo 3.7.12-5 (dsc) [2262 B] 118s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-weblogo 3.7.12-5 (tar) [934 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-weblogo 3.7.12-5 (diff) [8312 B] 118s gpgv: Signature made Sun Nov 27 17:33:23 2022 UTC 118s gpgv: using RSA key B23862C415D6565A4E86CBD7579C160D4C9E23E8 118s gpgv: Can't check signature: No public key 118s dpkg-source: warning: cannot verify inline signature for ./python-weblogo_3.7.12-5.dsc: no acceptable signature found 119s autopkgtest [09:57:45]: testing package python-weblogo version 3.7.12-5 119s autopkgtest [09:57:45]: build not needed 119s autopkgtest [09:57:45]: test command1: preparing testbed 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Starting pkgProblemResolver with broken count: 0 121s Starting 2 pkgProblemResolver with broken count: 0 121s Done 121s The following additional packages will be installed: 121s fontconfig-config fonts-glyphicons-halflings fonts-urw-base35 ghostscript 121s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 121s libdeflate0 libfontconfig1 libfontenc1 libfreetype6 libgfortran5 121s libgs-common libgs10 libgs10-common libice6 libidn12 libijs-0.35 libjbig0 121s libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-bootstrap liblapack3 liblbfgsb0 121s libopenjp2-7 libpaper1 libsharpyuv0 libsm6 libtiff6 libwebp7 libxt6t64 121s poppler-data python3-decorator python3-iniconfig python3-numpy 121s python3-packaging python3-pluggy python3-pytest python3-scipy 121s python3-weblogo x11-common xfonts-encodings xfonts-utils 121s Suggested packages: 121s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre texlive-binaries 121s cups-common poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho 121s fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 121s fonts-arphic-uming fonts-nanum gcc gfortran python-numpy-doc python3-dev 121s python-scipy-doc 121s Recommended packages: 121s fonts-droid-fallback libpaper-utils g++ | c++-compiler python3-pil 121s The following NEW packages will be installed: 121s autopkgtest-satdep fontconfig-config fonts-glyphicons-halflings 121s fonts-urw-base35 ghostscript libavahi-client3 libavahi-common-data 121s libavahi-common3 libblas3 libcups2t64 libdeflate0 libfontconfig1 libfontenc1 121s libfreetype6 libgfortran5 libgs-common libgs10 libgs10-common libice6 121s libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 121s libjs-bootstrap liblapack3 liblbfgsb0 libopenjp2-7 libpaper1 libsharpyuv0 121s libsm6 libtiff6 libwebp7 libxt6t64 poppler-data python3-decorator 121s python3-iniconfig python3-numpy python3-packaging python3-pluggy 121s python3-pytest python3-scipy python3-weblogo x11-common xfonts-encodings 121s xfonts-utils 121s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 121s Need to get 46.7 MB/46.7 MB of archives. 121s After this operation, 169 MB of additional disk space will be used. 121s Get:1 /tmp/autopkgtest.kaXqR9/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [728 B] 121s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x poppler-data all 0.4.12-1 [2060 kB] 122s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 122s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 122s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 122s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 122s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 122s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 122s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 122s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 122s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgs-common all 10.03.1~dfsg1-0ubuntu2 [175 kB] 122s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgs10-common all 10.03.1~dfsg1-0ubuntu2 [488 kB] 122s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-13ubuntu6 [29.7 kB] 122s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-13ubuntu6 [24.1 kB] 122s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-13ubuntu6 [27.2 kB] 122s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.10-1ubuntu2 [281 kB] 122s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 122s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libidn12 s390x 1.42-2 [58.5 kB] 122s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libijs-0.35 s390x 0.35-15.1build1 [15.5 kB] 122s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig2dec0 s390x 0.20-1build3 [69.3 kB] 122s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB] 122s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 122s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB] 122s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper1 s390x 1.1.29build1 [13.4 kB] 122s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.21-1 [46.1 kB] 122s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 122s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB] 122s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB] 122s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 122s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.0.10-1build3 [44.8 kB] 122s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.3-1build3 [17.7 kB] 122s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 122s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libgs10 s390x 10.03.1~dfsg1-0ubuntu2 [3917 kB] 122s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x ghostscript s390x 10.03.1~dfsg1-0ubuntu2 [43.5 kB] 122s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 122s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-7ubuntu1 [587 kB] 122s Get:37 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 122s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 123s Get:39 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 123s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 123s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 123s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 123s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB] 123s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 123s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.2-1 [251 kB] 123s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-3 [17.5 MB] 123s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-weblogo all 3.7.12-5 [116 kB] 123s Preconfiguring packages ... 123s Fetched 46.7 MB in 2s (22.2 MB/s) 123s Selecting previously unselected package poppler-data. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55484 files and directories currently installed.) 123s Preparing to unpack .../00-poppler-data_0.4.12-1_all.deb ... 123s Unpacking poppler-data (0.4.12-1) ... 123s Selecting previously unselected package libfontenc1:s390x. 123s Preparing to unpack .../01-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 123s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 123s Selecting previously unselected package libfreetype6:s390x. 123s Preparing to unpack .../02-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 123s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 123s Selecting previously unselected package x11-common. 123s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 123s Unpacking x11-common (1:7.7+23ubuntu3) ... 123s Selecting previously unselected package xfonts-encodings. 123s Preparing to unpack .../04-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 123s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 123s Selecting previously unselected package xfonts-utils. 123s Preparing to unpack .../05-xfonts-utils_1%3a7.7+7_s390x.deb ... 123s Unpacking xfonts-utils (1:7.7+7) ... 124s Selecting previously unselected package fonts-urw-base35. 124s Preparing to unpack .../06-fonts-urw-base35_20200910-8_all.deb ... 124s Unpacking fonts-urw-base35 (20200910-8) ... 124s Selecting previously unselected package fontconfig-config. 124s Preparing to unpack .../07-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 124s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 124s Selecting previously unselected package fonts-glyphicons-halflings. 124s Preparing to unpack .../08-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 124s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 124s Selecting previously unselected package libgs-common. 124s Preparing to unpack .../09-libgs-common_10.03.1~dfsg1-0ubuntu2_all.deb ... 124s Unpacking libgs-common (10.03.1~dfsg1-0ubuntu2) ... 124s Selecting previously unselected package libgs10-common. 124s Preparing to unpack .../10-libgs10-common_10.03.1~dfsg1-0ubuntu2_all.deb ... 124s Unpacking libgs10-common (10.03.1~dfsg1-0ubuntu2) ... 124s Selecting previously unselected package libavahi-common-data:s390x. 124s Preparing to unpack .../11-libavahi-common-data_0.8-13ubuntu6_s390x.deb ... 124s Unpacking libavahi-common-data:s390x (0.8-13ubuntu6) ... 124s Selecting previously unselected package libavahi-common3:s390x. 124s Preparing to unpack .../12-libavahi-common3_0.8-13ubuntu6_s390x.deb ... 124s Unpacking libavahi-common3:s390x (0.8-13ubuntu6) ... 124s Selecting previously unselected package libavahi-client3:s390x. 124s Preparing to unpack .../13-libavahi-client3_0.8-13ubuntu6_s390x.deb ... 124s Unpacking libavahi-client3:s390x (0.8-13ubuntu6) ... 124s Selecting previously unselected package libcups2t64:s390x. 124s Preparing to unpack .../14-libcups2t64_2.4.10-1ubuntu2_s390x.deb ... 124s Unpacking libcups2t64:s390x (2.4.10-1ubuntu2) ... 124s Selecting previously unselected package libfontconfig1:s390x. 124s Preparing to unpack .../15-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 124s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 124s Selecting previously unselected package libidn12:s390x. 124s Preparing to unpack .../16-libidn12_1.42-2_s390x.deb ... 124s Unpacking libidn12:s390x (1.42-2) ... 124s Selecting previously unselected package libijs-0.35:s390x. 124s Preparing to unpack .../17-libijs-0.35_0.35-15.1build1_s390x.deb ... 124s Unpacking libijs-0.35:s390x (0.35-15.1build1) ... 124s Selecting previously unselected package libjbig2dec0:s390x. 124s Preparing to unpack .../18-libjbig2dec0_0.20-1build3_s390x.deb ... 124s Unpacking libjbig2dec0:s390x (0.20-1build3) ... 124s Selecting previously unselected package libjpeg-turbo8:s390x. 124s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ... 124s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 124s Selecting previously unselected package libjpeg8:s390x. 124s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_s390x.deb ... 124s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 124s Selecting previously unselected package libopenjp2-7:s390x. 124s Preparing to unpack .../21-libopenjp2-7_2.5.0-2ubuntu1_s390x.deb ... 124s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 124s Selecting previously unselected package libpaper1:s390x. 124s Preparing to unpack .../22-libpaper1_1.1.29build1_s390x.deb ... 124s Unpacking libpaper1:s390x (1.1.29build1) ... 124s Selecting previously unselected package libdeflate0:s390x. 124s Preparing to unpack .../23-libdeflate0_1.21-1_s390x.deb ... 124s Unpacking libdeflate0:s390x (1.21-1) ... 124s Selecting previously unselected package libjbig0:s390x. 124s Preparing to unpack .../24-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 124s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 124s Selecting previously unselected package libsharpyuv0:s390x. 124s Preparing to unpack .../25-libsharpyuv0_1.4.0-0.1_s390x.deb ... 124s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ... 124s Selecting previously unselected package libwebp7:s390x. 124s Preparing to unpack .../26-libwebp7_1.4.0-0.1_s390x.deb ... 124s Unpacking libwebp7:s390x (1.4.0-0.1) ... 124s Selecting previously unselected package libtiff6:s390x. 124s Preparing to unpack .../27-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 124s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 124s Selecting previously unselected package libice6:s390x. 124s Preparing to unpack .../28-libice6_2%3a1.0.10-1build3_s390x.deb ... 124s Unpacking libice6:s390x (2:1.0.10-1build3) ... 124s Selecting previously unselected package libsm6:s390x. 124s Preparing to unpack .../29-libsm6_2%3a1.2.3-1build3_s390x.deb ... 124s Unpacking libsm6:s390x (2:1.2.3-1build3) ... 124s Selecting previously unselected package libxt6t64:s390x. 124s Preparing to unpack .../30-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 124s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 124s Selecting previously unselected package libgs10:s390x. 124s Preparing to unpack .../31-libgs10_10.03.1~dfsg1-0ubuntu2_s390x.deb ... 124s Unpacking libgs10:s390x (10.03.1~dfsg1-0ubuntu2) ... 124s Selecting previously unselected package ghostscript. 124s Preparing to unpack .../32-ghostscript_10.03.1~dfsg1-0ubuntu2_s390x.deb ... 124s Unpacking ghostscript (10.03.1~dfsg1-0ubuntu2) ... 124s Selecting previously unselected package libblas3:s390x. 124s Preparing to unpack .../33-libblas3_3.12.0-3build2_s390x.deb ... 124s Unpacking libblas3:s390x (3.12.0-3build2) ... 124s Selecting previously unselected package libgfortran5:s390x. 124s Preparing to unpack .../34-libgfortran5_14.2.0-7ubuntu1_s390x.deb ... 124s Unpacking libgfortran5:s390x (14.2.0-7ubuntu1) ... 124s Selecting previously unselected package libjs-bootstrap. 124s Preparing to unpack .../35-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 124s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 124s Selecting previously unselected package liblapack3:s390x. 124s Preparing to unpack .../36-liblapack3_3.12.0-3build2_s390x.deb ... 124s Unpacking liblapack3:s390x (3.12.0-3build2) ... 124s Selecting previously unselected package liblbfgsb0:s390x. 124s Preparing to unpack .../37-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 124s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 124s Selecting previously unselected package python3-decorator. 124s Preparing to unpack .../38-python3-decorator_5.1.1-5_all.deb ... 124s Unpacking python3-decorator (5.1.1-5) ... 124s Selecting previously unselected package python3-iniconfig. 124s Preparing to unpack .../39-python3-iniconfig_1.1.1-2_all.deb ... 124s Unpacking python3-iniconfig (1.1.1-2) ... 124s Selecting previously unselected package python3-numpy. 124s Preparing to unpack .../40-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 124s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 124s Selecting previously unselected package python3-packaging. 124s Preparing to unpack .../41-python3-packaging_24.1-1_all.deb ... 124s Unpacking python3-packaging (24.1-1) ... 124s Selecting previously unselected package python3-pluggy. 124s Preparing to unpack .../42-python3-pluggy_1.5.0-1_all.deb ... 124s Unpacking python3-pluggy (1.5.0-1) ... 124s Selecting previously unselected package python3-pytest. 124s Preparing to unpack .../43-python3-pytest_8.3.2-1_all.deb ... 124s Unpacking python3-pytest (8.3.2-1) ... 124s Selecting previously unselected package python3-scipy. 124s Preparing to unpack .../44-python3-scipy_1.13.1-3_s390x.deb ... 124s Unpacking python3-scipy (1.13.1-3) ... 125s Selecting previously unselected package python3-weblogo. 125s Preparing to unpack .../45-python3-weblogo_3.7.12-5_all.deb ... 125s Unpacking python3-weblogo (3.7.12-5) ... 125s Selecting previously unselected package autopkgtest-satdep. 125s Preparing to unpack .../46-1-autopkgtest-satdep.deb ... 125s Unpacking autopkgtest-satdep (0) ... 125s Setting up python3-iniconfig (1.1.1-2) ... 125s Setting up libsharpyuv0:s390x (1.4.0-0.1) ... 125s Setting up libpaper1:s390x (1.1.29build1) ... 125s 125s Creating config file /etc/papersize with new version 125s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 125s Setting up libijs-0.35:s390x (0.35-15.1build1) ... 125s Setting up libgs-common (10.03.1~dfsg1-0ubuntu2) ... 125s Setting up x11-common (1:7.7+23ubuntu3) ... 125s Setting up libdeflate0:s390x (1.21-1) ... 125s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 125s Setting up poppler-data (0.4.12-1) ... 125s Setting up python3-decorator (5.1.1-5) ... 125s Setting up libfontenc1:s390x (1:1.1.8-1build1) ... 125s Setting up libblas3:s390x (3.12.0-3build2) ... 125s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 125s Setting up python3-packaging (24.1-1) ... 125s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 125s Setting up libjbig2dec0:s390x (0.20-1build3) ... 125s Setting up libavahi-common-data:s390x (0.8-13ubuntu6) ... 125s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 125s Setting up libidn12:s390x (1.42-2) ... 125s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 125s Setting up libgfortran5:s390x (14.2.0-7ubuntu1) ... 125s Setting up python3-pluggy (1.5.0-1) ... 126s Setting up libwebp7:s390x (1.4.0-0.1) ... 126s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 126s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 126s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 126s Setting up libice6:s390x (2:1.0.10-1build3) ... 126s Setting up liblapack3:s390x (3.12.0-3build2) ... 126s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 126s Setting up python3-pytest (8.3.2-1) ... 126s Setting up libavahi-common3:s390x (0.8-13ubuntu6) ... 126s Setting up xfonts-utils (1:7.7+7) ... 126s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 128s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 128s Setting up libsm6:s390x (2:1.2.3-1build3) ... 128s Setting up libavahi-client3:s390x (0.8-13ubuntu6) ... 128s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 128s Setting up python3-scipy (1.13.1-3) ... 131s Setting up fonts-urw-base35 (20200910-8) ... 131s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 131s Setting up python3-weblogo (3.7.12-5) ... 131s Setting up libcups2t64:s390x (2.4.10-1ubuntu2) ... 131s Setting up libgs10-common (10.03.1~dfsg1-0ubuntu2) ... 131s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 131s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 131s Setting up libgs10:s390x (10.03.1~dfsg1-0ubuntu2) ... 131s Setting up ghostscript (10.03.1~dfsg1-0ubuntu2) ... 131s Setting up autopkgtest-satdep (0) ... 131s Processing triggers for man-db (2.12.1-3) ... 132s Processing triggers for libc-bin (2.40-1ubuntu3) ... 134s (Reading database ... 59579 files and directories currently installed.) 134s Removing autopkgtest-satdep (0) ... 134s autopkgtest [09:58:00]: test command1: pytest-3 -k 'not test_formats' 134s autopkgtest [09:58:00]: test command1: [----------------------- 135s ============================= test session starts ============================== 135s platform linux -- Python 3.12.7, pytest-8.3.2, pluggy-1.5.0 135s rootdir: /tmp/autopkgtest.kaXqR9/build.wGk/src 135s plugins: typeguard-4.3.0 135s collected 245 items / 2 deselected / 243 selected 135s 135s tests/test_array_io.py .... [ 1%] 144s tests/test_cli.py .......... [ 5%] 144s tests/test_clustal_io.py ............. [ 11%] 144s tests/test_data.py .. [ 11%] 144s tests/test_fasta_io.py ............. [ 17%] 144s tests/test_genbank_io.py .. [ 18%] 144s tests/test_intelligenetics_io.py ..... [ 20%] 144s tests/test_matrix.py ....... [ 23%] 144s tests/test_msf_io.py ........ [ 26%] 144s tests/test_nbrf_io.py ......... [ 30%] 144s tests/test_nexus.py ..... [ 32%] 144s tests/test_nexus_io.py ....... [ 34%] 144s tests/test_null_io.py ... [ 36%] 144s tests/test_phylip_io.py ........... [ 40%] 144s tests/test_plain_io.py ... [ 41%] 144s tests/test_seq.py .............................................. [ 60%] 144s tests/test_seq_io.py ............ [ 65%] 144s tests/test_stockholm_io.py ......... [ 69%] 144s tests/test_table_io.py ... [ 70%] 145s tests/test_transform.py ........ [ 74%] 149s tests/test_transformseq.py ........ [ 77%] 149s tests/test_utils.py ........... [ 81%] 152s tests/test_weblogo.py ............................................ [100%] 152s 152s =============================== warnings summary =============================== 152s weblogo/__init__.py:1 152s /tmp/autopkgtest.kaXqR9/build.wGk/src/weblogo/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 152s from pkg_resources import DistributionNotFound, get_distribution 152s 152s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 152s ================ 243 passed, 2 deselected, 1 warning in 17.58s ================= 152s autopkgtest [09:58:18]: test command1: -----------------------] 153s autopkgtest [09:58:19]: test command1: - - - - - - - - - - results - - - - - - - - - - 153s command1 PASS 153s autopkgtest [09:58:19]: test autodep8-python3: preparing testbed 266s autopkgtest [10:00:12]: testbed dpkg architecture: s390x 267s autopkgtest [10:00:13]: testbed apt version: 2.9.8 267s autopkgtest [10:00:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 267s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 268s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [2840 B] 268s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 268s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [28.1 kB] 268s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [212 kB] 268s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [42.1 kB] 268s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [234 kB] 268s Fetched 600 kB in 1s (915 kB/s) 268s Reading package lists... 270s Reading package lists... 270s Building dependency tree... 270s Reading state information... 270s Calculating upgrade... 270s The following packages were automatically installed and are no longer required: 270s libperl5.38t64 perl-modules-5.38 270s Use 'sudo apt autoremove' to remove them. 270s The following NEW packages will be installed: 270s libperl5.40 perl-modules-5.40 python3-jaraco.text 270s The following packages will be upgraded: 270s info install-info libkeyutils1 liblocale-gettext-perl libtext-charwidth-perl 270s libtext-iconv-perl perl perl-base python3-pkg-resources python3-setuptools 270s vim-common vim-tiny xxd 270s 13 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 270s Need to get 12.6 MB of archives. 270s After this operation, 50.3 MB of additional disk space will be used. 270s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x perl-modules-5.40 all 5.40.0-6 [3214 kB] 271s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libperl5.40 s390x 5.40.0-6 [4984 kB] 271s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x perl s390x 5.40.0-6 [262 kB] 271s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x perl-base s390x 5.40.0-6 [1971 kB] 271s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x liblocale-gettext-perl s390x 1.07-7build1 [15.9 kB] 271s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libtext-iconv-perl s390x 1.7-8build4 [13.8 kB] 271s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libtext-charwidth-perl s390x 0.04-11build4 [9646 B] 271s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x install-info s390x 7.1.1-1 [64.8 kB] 271s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libkeyutils1 s390x 1.6.3-4ubuntu2 [9960 B] 271s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x vim-tiny s390x 2:9.1.0777-1ubuntu1 [664 kB] 271s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 271s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x xxd s390x 2:9.1.0777-1ubuntu1 [66.5 kB] 271s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x info s390x 7.1.1-1 [149 kB] 271s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jaraco.text all 4.0.0-1 [11.5 kB] 271s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-pkg-resources all 75.2.0-1 [134 kB] 271s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-setuptools all 75.2.0-1 [657 kB] 271s Fetched 12.6 MB in 1s (13.1 MB/s) 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55329 files and directories currently installed.) 271s Preparing to unpack .../perl_5.40.0-6_s390x.deb ... 271s Unpacking perl (5.40.0-6) over (5.38.2-5) ... 271s Selecting previously unselected package perl-modules-5.40. 271s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... 271s Unpacking perl-modules-5.40 (5.40.0-6) ... 271s Selecting previously unselected package libperl5.40:s390x. 271s Preparing to unpack .../libperl5.40_5.40.0-6_s390x.deb ... 271s Unpacking libperl5.40:s390x (5.40.0-6) ... 272s Preparing to unpack .../perl-base_5.40.0-6_s390x.deb ... 272s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... 272s Setting up perl-base (5.40.0-6) ... 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57408 files and directories currently installed.) 272s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_s390x.deb ... 272s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 272s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_s390x.deb ... 272s Unpacking libtext-iconv-perl:s390x (1.7-8build4) over (1.7-8build3) ... 272s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_s390x.deb ... 272s Unpacking libtext-charwidth-perl:s390x (0.04-11build4) over (0.04-11build3) ... 272s Preparing to unpack .../install-info_7.1.1-1_s390x.deb ... 272s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 272s Setting up install-info (7.1.1-1) ... 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57408 files and directories currently installed.) 272s Preparing to unpack .../0-libkeyutils1_1.6.3-4ubuntu2_s390x.deb ... 272s Unpacking libkeyutils1:s390x (1.6.3-4ubuntu2) over (1.6.3-3build1) ... 272s Preparing to unpack .../1-vim-tiny_2%3a9.1.0777-1ubuntu1_s390x.deb ... 272s Unpacking vim-tiny (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 272s Preparing to unpack .../2-vim-common_2%3a9.1.0777-1ubuntu1_all.deb ... 272s Unpacking vim-common (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 272s Preparing to unpack .../3-xxd_2%3a9.1.0777-1ubuntu1_s390x.deb ... 272s Unpacking xxd (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 272s Preparing to unpack .../4-info_7.1.1-1_s390x.deb ... 272s Unpacking info (7.1.1-1) over (7.1-3build2) ... 272s Selecting previously unselected package python3-jaraco.text. 272s Preparing to unpack .../5-python3-jaraco.text_4.0.0-1_all.deb ... 272s Unpacking python3-jaraco.text (4.0.0-1) ... 272s Preparing to unpack .../6-python3-pkg-resources_75.2.0-1_all.deb ... 272s Unpacking python3-pkg-resources (75.2.0-1) over (74.1.2-1) ... 272s Preparing to unpack .../7-python3-setuptools_75.2.0-1_all.deb ... 272s Unpacking python3-setuptools (75.2.0-1) over (74.1.2-1) ... 272s Setting up python3-pkg-resources (75.2.0-1) ... 272s Setting up libtext-iconv-perl:s390x (1.7-8build4) ... 272s Setting up libtext-charwidth-perl:s390x (0.04-11build4) ... 272s Setting up libkeyutils1:s390x (1.6.3-4ubuntu2) ... 272s Setting up xxd (2:9.1.0777-1ubuntu1) ... 272s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 272s Installing new version of config file /etc/vim/vimrc ... 272s Setting up python3-jaraco.text (4.0.0-1) ... 272s Setting up perl-modules-5.40 (5.40.0-6) ... 272s Setting up info (7.1.1-1) ... 272s Setting up liblocale-gettext-perl (1.07-7build1) ... 272s Setting up python3-setuptools (75.2.0-1) ... 273s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 273s Setting up libperl5.40:s390x (5.40.0-6) ... 273s Setting up perl (5.40.0-6) ... 273s Processing triggers for libc-bin (2.40-1ubuntu3) ... 273s Processing triggers for man-db (2.12.1-3) ... 274s Processing triggers for install-info (7.1.1-1) ... 274s Reading package lists... 274s Building dependency tree... 274s Reading state information... 275s The following packages will be REMOVED: 275s libperl5.38t64* perl-modules-5.38* 275s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 275s After this operation, 49.5 MB disk space will be freed. 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57417 files and directories currently installed.) 275s Removing libperl5.38t64:s390x (5.38.2-5) ... 275s Removing perl-modules-5.38 (5.38.2-5) ... 275s Processing triggers for man-db (2.12.1-3) ... 275s Processing triggers for libc-bin (2.40-1ubuntu3) ... 276s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 276s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 276s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 276s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 276s Reading package lists... 276s Reading package lists... 277s Building dependency tree... 277s Reading state information... 277s Calculating upgrade... 277s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 277s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 281s Reading package lists... 281s Building dependency tree... 281s Reading state information... 281s Starting pkgProblemResolver with broken count: 0 281s Starting 2 pkgProblemResolver with broken count: 0 281s Done 281s The following additional packages will be installed: 281s fonts-glyphicons-halflings libblas3 libgfortran5 libjs-bootstrap liblapack3 281s liblbfgsb0 python3-all python3-decorator python3-numpy python3-scipy 281s python3-weblogo 281s Suggested packages: 281s gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc 281s Recommended packages: 281s g++ | c++-compiler python3-pil 281s The following NEW packages will be installed: 281s autopkgtest-satdep fonts-glyphicons-halflings libblas3 libgfortran5 281s libjs-bootstrap liblapack3 liblbfgsb0 python3-all python3-decorator 281s python3-numpy python3-scipy python3-weblogo 281s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 281s Need to get 25.8 MB/25.8 MB of archives. 281s After this operation, 103 MB of additional disk space will be used. 281s Get:1 /tmp/autopkgtest.kaXqR9/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 281s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 282s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 282s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-7ubuntu1 [587 kB] 282s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 282s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 282s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 282s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.12.6-0ubuntu1 [890 B] 282s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 282s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 282s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-3 [17.5 MB] 282s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-weblogo all 3.7.12-5 [116 kB] 283s Fetched 25.8 MB in 1s (19.7 MB/s) 283s Selecting previously unselected package fonts-glyphicons-halflings. 283s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55484 files and directories currently installed.) 283s Preparing to unpack .../00-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 283s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 283s Selecting previously unselected package libblas3:s390x. 283s Preparing to unpack .../01-libblas3_3.12.0-3build2_s390x.deb ... 283s Unpacking libblas3:s390x (3.12.0-3build2) ... 283s Selecting previously unselected package libgfortran5:s390x. 283s Preparing to unpack .../02-libgfortran5_14.2.0-7ubuntu1_s390x.deb ... 283s Unpacking libgfortran5:s390x (14.2.0-7ubuntu1) ... 283s Selecting previously unselected package libjs-bootstrap. 283s Preparing to unpack .../03-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 283s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 283s Selecting previously unselected package liblapack3:s390x. 283s Preparing to unpack .../04-liblapack3_3.12.0-3build2_s390x.deb ... 283s Unpacking liblapack3:s390x (3.12.0-3build2) ... 283s Selecting previously unselected package liblbfgsb0:s390x. 283s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 283s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 283s Selecting previously unselected package python3-all. 283s Preparing to unpack .../06-python3-all_3.12.6-0ubuntu1_s390x.deb ... 283s Unpacking python3-all (3.12.6-0ubuntu1) ... 283s Selecting previously unselected package python3-decorator. 283s Preparing to unpack .../07-python3-decorator_5.1.1-5_all.deb ... 283s Unpacking python3-decorator (5.1.1-5) ... 283s Selecting previously unselected package python3-numpy. 283s Preparing to unpack .../08-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 283s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 283s Selecting previously unselected package python3-scipy. 283s Preparing to unpack .../09-python3-scipy_1.13.1-3_s390x.deb ... 283s Unpacking python3-scipy (1.13.1-3) ... 283s Selecting previously unselected package python3-weblogo. 283s Preparing to unpack .../10-python3-weblogo_3.7.12-5_all.deb ... 283s Unpacking python3-weblogo (3.7.12-5) ... 283s Selecting previously unselected package autopkgtest-satdep. 283s Preparing to unpack .../11-2-autopkgtest-satdep.deb ... 283s Unpacking autopkgtest-satdep (0) ... 283s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 283s Setting up python3-all (3.12.6-0ubuntu1) ... 283s Setting up python3-decorator (5.1.1-5) ... 283s Setting up libblas3:s390x (3.12.0-3build2) ... 283s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 283s Setting up libgfortran5:s390x (14.2.0-7ubuntu1) ... 283s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 283s Setting up liblapack3:s390x (3.12.0-3build2) ... 283s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 283s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 285s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 285s Setting up python3-scipy (1.13.1-3) ... 289s Setting up python3-weblogo (3.7.12-5) ... 289s Setting up autopkgtest-satdep (0) ... 289s Processing triggers for man-db (2.12.1-3) ... 289s Processing triggers for libc-bin (2.40-1ubuntu3) ... 291s (Reading database ... 58004 files and directories currently installed.) 291s Removing autopkgtest-satdep (0) ... 292s autopkgtest [10:00:38]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import weblogo; print(weblogo)" ; done 292s autopkgtest [10:00:38]: test autodep8-python3: [----------------------- 292s Testing with python3.12: 293s 293s autopkgtest [10:00:39]: test autodep8-python3: -----------------------] 293s autodep8-python3 PASS (superficial) 293s autopkgtest [10:00:39]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 294s autopkgtest [10:00:40]: @@@@@@@@@@@@@@@@@@@@ summary 294s command1 PASS 294s autodep8-python3 PASS (superficial) 309s nova [W] Using flock in prodstack6-s390x 309s flock: timeout while waiting to get lock 309s Creating nova instance adt-plucky-s390x-python-weblogo-20241030-095546-juju-7f2275-prod-proposed-migration-environment-15-1d95954f-3826-409b-b2b8-840d481be3f3 from image adt/ubuntu-plucky-s390x-server-20241029.img (UUID f65adb75-f507-40e2-9b64-4d84ffb9df90)... 309s nova [W] Using flock in prodstack6-s390x 309s flock: timeout while waiting to get lock 309s Creating nova instance adt-plucky-s390x-python-weblogo-20241030-095546-juju-7f2275-prod-proposed-migration-environment-15-1d95954f-3826-409b-b2b8-840d481be3f3 from image adt/ubuntu-plucky-s390x-server-20241029.img (UUID f65adb75-f507-40e2-9b64-4d84ffb9df90)...