0s autopkgtest: DBG: testbed init 0s autopkgtest [12:53:05]: starting date and time: 2025-02-19 12:53:05+0000 0s autopkgtest [12:53:05]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:53:05]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8283qf8o/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-skbio --debug --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-21.secgroup --name adt-plucky-s390x-python-skbio-20250219-125304-juju-7f2275-prod-proposed-migration-environment-15-cc20afe1-df0f-4002-bee7-12189476ac81 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 0s autopkgtest: DBG: got reply from testbed: ok 0s autopkgtest: DBG: testbed open, scratch=None 0s autopkgtest: DBG: sending command to testbed: open 105s autopkgtest: DBG: got reply from testbed: ok /tmp/autopkgtest.ynjZkT 105s autopkgtest: DBG: sending command to testbed: print-execute-command 105s autopkgtest: DBG: got reply from testbed: ok /tmp/autopkgtest-ssh.cgw72zjy/runcmd 105s autopkgtest: DBG: sending command to testbed: capabilities 105s autopkgtest: DBG: got reply from testbed: ok suggested-normal-user=ubuntu revert-full-system revert isolation-machine reboot root-on-testbed 105s autopkgtest: DBG: testbed capabilities: ['suggested-normal-user=ubuntu', 'revert-full-system', 'revert', 'isolation-machine', 'reboot', 'root-on-testbed', 'has_internet'] 105s autopkgtest: DBG: testbed command ['mkdir', '-p', '/tmp/autopkgtest.ynjZkT'], kind short, sout raw, serr pipe, env [] 105s autopkgtest: DBG: testbed command exited with code 0 105s autopkgtest: DBG: sending command to testbed: copydown /home/ubuntu/autopkgtest/lib/in-testbed/wrapper.sh /tmp/autopkgtest.ynjZkT/wrapper.sh 106s autopkgtest: DBG: got reply from testbed: ok 106s autopkgtest: DBG: testbed command ['chmod', '-R', '0755', '--', '/tmp/autopkgtest.ynjZkT/wrapper.sh'], kind short, sout raw, serr pipe, env [] 106s autopkgtest: DBG: testbed command exited with code 0 106s autopkgtest: DBG: testbed command ['dpkg', '--print-architecture'], kind short, sout pipe, serr pipe, env [] 106s autopkgtest: DBG: testbed command exited with code 0 106s autopkgtest [12:54:51]: testbed dpkg architecture: s390x 106s autopkgtest: DBG: testbed command ['dpkg-query', '-W', '-f', '${Version}', 'apt'], kind short, sout pipe, serr pipe, env [] 106s autopkgtest: DBG: testbed command exited with code 0 106s autopkgtest [12:54:51]: testbed apt version: 2.9.30 106s autopkgtest: DBG: testbed command ['sh', '-ec', 'command -v eatmydata'], kind short, sout pipe, serr pipe, env [] 106s autopkgtest: DBG: testbed command exited with code 0 106s autopkgtest: DBG: testbed has eatmydata 106s autopkgtest: DBG: testbed command ['mkdir', '-p', '/etc/apt/preferences.d'], kind short, sout raw, serr pipe, env [] 106s autopkgtest: DBG: testbed command exited with code 0 106s autopkgtest [12:54:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s autopkgtest: DBG: testbed command ['sh', '-ec', '#!/bin/sh\n# Copyright © 2006-2018 Canonical Ltd.\n# Copyright © 2015-2017 Martin Pitt\n# Copyright © 2017 Steve Langasek\n# Copyright © 2017-2022 Paul Gevers\n# Copyright © 2018 Simon McVittie\n# SPDX-License-Identifier: GPL-2.0-or-later\n\n# This script returns the first suite found in apt sources. We can\'t just rely\n# on /etc/os-release because it doesn\'t allow to distinguish between Debian\n# unstable and testing.\n#\n# This release detection logic should be kept in sync with similar code in the\n# setup-testbed script.\n#\n# For more information on APT data sources see sources.list(5).\n\n# Usage $0\n\nset -eux\n\ndistro=UNKNOWN\nif [ -r /etc/os-release ]; then\n # shellcheck disable=SC1091\n distro=$(. /etc/os-release && echo "${ID:-$distro}")\nfi\n\n# Try guessing the default release from deb822-style format sources.\n#\n# While not mandatory, APT upstream expects distros to follow the\n# .sources naming pattern for the default deb822 sources.\napt_sources="/etc/apt/sources.list.d/$distro.sources"\nif [ -r "$apt_sources" ]; then\n release=$(sed -En \'s/^Suites:\\s*(\\w+).*/\\1/Ip\' "$apt_sources" | head -n1)\n [ -n "$release" ] && echo "$release" && exit\nfi\n\n# Try guessing the default release from one-line-style format sources.\napt_sources=/etc/apt/sources.list\nif [ -r "$apt_sources" ]; then\n release=$(sed -En \'/^(deb|deb-src) +(\\[.*\\] *)?(http|https|file):/ { s/\\[.*\\] +//; s/^[^ ]+ +[^ ]* +([^ ]+) +.*$/\\1/p }\' "$apt_sources" | head -n1)\n [ -n "$release" ] && echo "$release" && exit\nfi\n\n# Could not guess the default release\necho "Could not guess the default release from the APT sources." >&2\nexit 1\n'], kind short, sout pipe, serr pipe, env [] 107s autopkgtest: DBG: testbed command exited with code 0 107s autopkgtest [12:54:52]: testbed release detected to be: None 107s autopkgtest: DBG: testbed command ['sh', '-ec', '#!/bin/sh\n# SPDX-License-Identifier: GPL-2.0-or-later\n\n# This script returns the list of configured "deb" sources in one-line-style\n# source lists (/etc/apt/sources.list, /etc/apt/sources.list.d/*.list).\n# See sources.list(5) for more information on the APT source list formats.\n#\n# This script takes no arguments.\n\nset -eu\n\n# grep(1) returns 1 if no lines were selected from the input files, which\n# can happen if there are .list files, but they contain no "deb" entries.\n# We don\'t want to fail in this case, hence the "|| true", which we put\n# in a subshell because we want it to affect only the grep invocation.\n{\n if [ -f /etc/apt/sources.list ]; then\n printf \'%s\\0\' /etc/apt/sources.list\n fi\n if [ -d /etc/apt/sources.list.d ]; then\n find /etc/apt/sources.list.d -maxdepth 1 -type f -regex \'.*/[a-zA-Z0-9_.-]+\\.list\' -print0 \\\n | LC_ALL=C sort --zero-terminated\n fi\n} | xargs -0 --no-run-if-empty -- sh -c \'grep -h "^deb " "$@" || true\' "$(basename "$0")"\n'], kind short, sout pipe, serr pipe, env [] 107s autopkgtest: DBG: testbed command exited with code 0 107s autopkgtest: DBG: testbed command ['sh', '-ec', '#!/bin/sh\n# SPDX-License-Identifier: GPL-2.0-or-later\n\n# This script returns the list of configured sources in deb822-style source\n# lists (/etc/apt/sources.list.d/*.sources). Sources are not stripped out of\n# comments, extra blank lines or similar: the output of this script is meant to\n# be consumed by a deb822 parser that is able to correctly handle those.\n# See sources.list(5) for more information on the APT source list formats.\n#\n# This script takes no arguments.\n\nset -eu\n\n# Awk concatenates files making sure stanzas from separate files are separated\n# by a blank line, even if there are no newlines at EOF in the .sources files.\nif [ -d /etc/apt/sources.list.d ]; then\n find /etc/apt/sources.list.d -maxdepth 1 -type f -regex \'.*/[a-zA-Z0-9_.-]+\\.sources\' -print0 \\\n | LC_ALL=C sort --zero-terminated \\\n | xargs -0 --no-run-if-empty -- awk \'FNR == 1 && NR != 1 { print "" } { print }\'\nfi\n'], kind short, sout pipe, serr pipe, env [] 107s autopkgtest: DBG: testbed command exited with code 0 107s autopkgtest: DBG: adding APT source: Types: deb deb-src 107s URIs: http://ftpmaster.internal/ubuntu/ 107s Suites: plucky-proposed 107s Components: main restricted universe multiverse 107s Signed-By: /usr/share/keyrings/ubuntu-archive-keyring.gpg 107s autopkgtest: DBG: testbed command ['sh', '-ec', '"$@" >> "/etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources"', 'add_apt_source', 'printf', '%s\\n', 'Types: deb deb-src\nURIs: http://ftpmaster.internal/ubuntu/\nSuites: plucky-proposed\nComponents: main restricted universe multiverse\nSigned-By: /usr/share/keyrings/ubuntu-archive-keyring.gpg\n'], kind short, sout raw, serr pipe, env [] 107s autopkgtest: DBG: testbed command exited with code 0 107s autopkgtest: DBG: adding APT preference to autopkgtest-zz-plucky-proposed-baseline.pref: 107s Package: * 107s Pin: release plucky-proposed 107s Pin-Priority: 500 107s autopkgtest: DBG: testbed command ['sh', '-ec', '"$@" > "/etc/apt/preferences.d/autopkgtest-zz-plucky-proposed-baseline.pref"', 'add_apt_preference', 'printf', '%s\\n', 'Package: *\nPin: release plucky-proposed\nPin-Priority: 500'], kind short, sout raw, serr pipe, env [] 107s autopkgtest: DBG: testbed command exited with code 0 107s autopkgtest [12:54:52]: updating testbed package index (apt update) 107s autopkgtest: DBG: testbed command ['/bin/sh', '-ec', '"$@" 3>&2 2>&1', 'run_apt_command', '/usr/bin/eatmydata', 'apt-get', '--quiet', '--assume-yes', '-o=APT::Status-Fd=3', '-o=APT::Install-Recommends=false', '-o=Dpkg::Options::=--force-confnew', '-o=Debug::pkgProblemResolver=true', 'update'], kind install, sout raw, serr pipe, env ['DEBIAN_FRONTEND=noninteractive', 'APT_LISTBUGS_FRONTEND=none', 'APT_LISTCHANGES_FRONTEND=none'] 108s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 108s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 108s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 108s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 108s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 108s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 108s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 108s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 109s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [95.1 kB] 109s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B] 109s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [646 kB] 109s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4900 B] 109s Fetched 1700 kB in 1s (1250 kB/s) 110s Reading package lists... 110s autopkgtest: DBG: testbed command exited with code 0 110s autopkgtest: DBG: adding APT preference to autopkgtest-plucky-proposed.pref: 110s Package: * 110s Pin: release plucky-proposed 110s Pin-Priority: 100 110s 110s Package: src:sphinx:any 110s Pin: release plucky-proposed 110s Pin-Priority: 995 110s autopkgtest: DBG: testbed command ['sh', '-ec', '"$@" > "/etc/apt/preferences.d/autopkgtest-plucky-proposed.pref"', 'add_apt_preference', 'printf', '%s\\n', 'Package: *\nPin: release plucky-proposed\nPin-Priority: 100\n\nPackage: src:sphinx:any\nPin: release plucky-proposed\nPin-Priority: 995'], kind short, sout raw, serr pipe, env [] 110s autopkgtest: DBG: testbed command exited with code 0 110s autopkgtest: DBG: testbed command ['bash', '-ec', 'for d in /boot /boot/efi /boot/grub /etc/init /etc/init.d /etc/systemd/system /lib/systemd/system; do [ ! -d $d ] || touch -r $d /tmp/autopkgtest.ynjZkT/${d//\\//_}.stamp; done'], kind short, sout raw, serr pipe, env [] 110s autopkgtest: DBG: testbed command exited with code 0 110s autopkgtest: DBG: testbed command ['sh', '-ec', '#!/bin/sh\n# Canonical/Ubuntu specific testbed setup\n\nset -x\n\nRELEASE=$(lsb_release --codename --short 2>/dev/null)\n\n# Make the installed package versions match what is available from the configured\n# repositories, even if a downgrade is required.\n#\n# We may end up with images with packages newer than those available from the\n# repositories when opening a new release (images are created using the\n# previous release dailies as a base, which may include 0-day SRUs, or\n# Launchpad may fail to copy packages, see openssl 3.0.8-1ubuntu2), or when\n# package versions are pulled from the archive.\n#\n# Note: \'release a=\' matches the Suite field in the repository Release file.\ncat >/etc/apt/preferences.d/force-downgrade-to-release.pref <= Focal).\n#\n# Note: autoremove/--autoremove always runs on the entire set of installed\n# packages. Together with --autopurge/purge each removal becomes a purge.\n#\n# Removing \'?obsolete\' packages may remove the running kernel. This is not\n# expected to be an issue.\nif /usr/lib/apt/apt-helper analyze-pattern \'?true\' >/dev/null 2>&1; then\n # DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove \'?obsolete\'\n # Avoid removing the running kernel\n running_kernel_pattern="^linux-.*$(uname -r | sed \'s/\\./\\\\./g\').*"\n obsolete_pkgs="$(apt list \'?obsolete\' 2>/dev/null \\\n | tail -n+2 \\\n | cut -d\'/\' -f1 \\\n | grep -v "${running_kernel_pattern}" || true)"\n DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove ${obsolete_pkgs}\nelse\n # We\'re on an older release (analyze-pattern is not available).\n # Still do an autopurge to get rid of packages that got orphaned\n # by downgrades.\n eatmydata apt-get -y autoremove --purge\nfi\n\n# compatibility with old Jenkins testbeds for trusty\nif grep -q trusty /etc/lsb-release; then apt-get update || (sleep 10; apt-get update); apt-get install -y build-essential; fi\n\n# these packages really break tests, purge them if we use standard cloud images\n# (on lcy01)\nfor p in unattended-upgrades lxd lxd-client snapd; do\n [ ! -d /usr/share/doc/$p ] || $(which eatmydata || true) apt-get purge --auto-remove -y $p\ndone\n\nif type iptables >/dev/null 2>&1; then\n cat < /etc/rc.local\n#!/bin/sh\n\n# work around broken PTMU; LP: #1572026, RT#90771\niptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu || true\n\n# These addresses are used at least by rust-reqwest and should not be reachable\n# See https://bugs.launchpad.net/ubuntu/+source/rust-reqwest/+bug/2080346\niptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP || true\niptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP || true\nEOF\n chmod 755 /etc/rc.local\n # shellcheck disable=SC1091\n . /etc/rc.local\nfi\n\n# work around broken tty on ppc64el instances (LP: #1607075)\nif [ "$(uname -m)" = ppc64le ] && [ "$(systemctl is-active keyboard-setup.service 2>/dev/null|| true)" = failed ]; then\n systemctl reset-failed keyboard-setup.service\n systemctl mask keyboard-setup.service\nfi\n\n# work around late urandom pool initialization (LP: #1622893)\nif [ -d /run/systemd/system ] && systemd-detect-virt --quiet --vm; then\n mkdir -p /etc/systemd/system/systemd-random-seed.service.d/\n cat < /etc/systemd/system/systemd-random-seed.service.d/fakeentropy.conf\n[Service]\nExecStart=/usr/bin/perl -E \'open \\$\\$f, "/bin/bash" or die; open \\$\\$rnd, ">/dev/random" or die; for (\\$\\$i = 0; \\$\\$i < 10; ++\\$\\$i) {read \\$\\$f, \\$\\$d, 64; ioctl \\$\\$rnd, 0x40085203, pack("ii", 64*8, 64) . \\$\\$d}\'\nEOF\nfi\n\n# set compressor to lz4 where supported, we care about compression speed\nif grep -q lz4 /etc/initramfs-tools/initramfs.conf; then\n echo COMPRESS=lz4 > /etc/initramfs-tools/conf.d/lz4\nfi'], kind install, sout raw, serr raw, env ['AUTOPKGTEST_IS_SETUP_COMMAND=1', 'AUTOPKGTEST_NORMAL_USER=ubuntu', 'ADT_NORMAL_USER=ubuntu'] 110s + lsb_release --codename --short 110s + RELEASE=plucky 110s + cat 110s + [ plucky != trusty ] 110s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 110s The following packages were automatically installed and are no longer required: 110s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 110s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 110s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 110s linux-tools-6.11.0-8-generic 110s Use 'sudo apt autoremove' to remove them. 110s The following packages will be upgraded: 110s iproute2 liblsof0 libp11-kit0 lsof 111s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Need to get 1791 kB of archives. 111s After this operation, 17.4 kB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x iproute2 s390x 6.13.0-1ubuntu1 [1174 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit0 s390x 0.25.5-2ubuntu3 [316 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x lsof s390x 4.99.4+dfsg-1 [243 kB] 111s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblsof0 s390x 4.99.4+dfsg-1 [58.5 kB] 112s Preconfiguring packages ... 112s Fetched 1791 kB in 1s (1881 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81030 files and directories currently installed.) 112s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_s390x.deb ... 112s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 112s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu3_s390x.deb ... 112s Unpacking libp11-kit0:s390x (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 112s Preparing to unpack .../lsof_4.99.4+dfsg-1_s390x.deb ... 112s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 112s Preparing to unpack .../liblsof0_4.99.4+dfsg-1_s390x.deb ... 112s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 112s Setting up liblsof0 (4.99.4+dfsg-1) ... 112s Setting up iproute2 (6.13.0-1ubuntu1) ... 112s Setting up libp11-kit0:s390x (0.25.5-2ubuntu3) ... 112s Setting up lsof (4.99.4+dfsg-1) ... 112s Processing triggers for man-db (2.13.0-1) ... 113s Processing triggers for libc-bin (2.40-4ubuntu1) ... 113s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 113s + /usr/lib/apt/apt-helper analyze-pattern ?true 113s + uname -r 113s + sed s/\./\\./g 113s + running_kernel_pattern=^linux-.*6\.12\.0-15-generic.* 113s + apt list ?obsolete 113s + tail -n+2+ 113s cut -d/ -f1 113s + grep -v ^linux-.*6\.12\.0-15-generic.* 113s + true 113s + obsolete_pkgs= 113s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s The following packages will be REMOVED: 113s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 113s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 113s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 113s linux-tools-6.11.0-8-generic* 113s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 113s After this operation, 167 MB disk space will be freed. 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81031 files and directories currently installed.) 113s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 113s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 113s Removing libpython3.12t64:s390x (3.12.9-1) ... 113s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 113s Removing libnsl2:s390x (1.3.0-3build3) ... 113s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 113s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 114s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 114s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 114s Processing triggers for libc-bin (2.40-4ubuntu1) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55931 files and directories currently installed.) 114s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 114s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 115s + grep -q trusty /etc/lsb-release 115s + [ ! -d /usr/share/doc/unattended-upgrades ] 115s + [ ! -d /usr/share/doc/lxd ] 115s + [ ! -d /usr/share/doc/lxd-client ] 115s + [ ! -d /usr/share/doc/snapd ] 115s + type iptables 115s + cat 115s + chmod 755 /etc/rc.local 115s + . /etc/rc.local 115s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 115s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 115s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 115s + uname -m 115s + [ s390x = ppc64le ] 115s + [ -d /run/systemd/system ] 115s + systemd-detect-virt --quiet --vm 115s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 115s + cat 115s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 115s + echo COMPRESS=lz4 115s autopkgtest: DBG: testbed command exited with code 0 115s autopkgtest [12:55:00]: upgrading testbed (apt dist-upgrade and autopurge) 115s autopkgtest: DBG: testbed command ['/bin/sh', '-ec', '"$@" 3>&2 2>&1', 'run_apt_command', '/usr/bin/eatmydata', 'apt-get', '--quiet', '--assume-yes', '-o=APT::Status-Fd=3', '-o=APT::Install-Recommends=false', '-o=Dpkg::Options::=--force-confnew', '-o=Debug::pkgProblemResolver=true', 'dist-upgrade'], kind install, sout raw, serr pipe, env ['DEBIAN_FRONTEND=noninteractive', 'APT_LISTBUGS_FRONTEND=none', 'APT_LISTCHANGES_FRONTEND=none'] 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 115s Starting 2 pkgProblemResolver with broken count: 0 115s Done 115s Entering ResolveByKeep 115s 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest: DBG: testbed command exited with code 0 115s autopkgtest: DBG: testbed command ['/bin/sh', '-ec', '"$@" 3>&2 2>&1', 'run_apt_command', '/usr/bin/eatmydata', 'apt-get', '--quiet', '--assume-yes', '-o=APT::Status-Fd=3', '-o=APT::Install-Recommends=false', '-o=Dpkg::Options::=--force-confnew', '-o=Debug::pkgProblemResolver=true', '--purge', 'autoremove'], kind install, sout raw, serr pipe, env ['DEBIAN_FRONTEND=noninteractive', 'APT_LISTBUGS_FRONTEND=none', 'APT_LISTCHANGES_FRONTEND=none'] 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Starting pkgProblemResolver with broken count: 0 116s Starting 2 pkgProblemResolver with broken count: 0 116s Done 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest: DBG: testbed command exited with code 0 116s autopkgtest: DBG: testbed command ['bash', '-ec', '[ ! -e /run/autopkgtest_no_reboot.stamp ] || exit 0;for d in /boot /boot/efi /boot/grub /etc/init /etc/init.d /etc/systemd/system /lib/systemd/system; do s=/tmp/autopkgtest.ynjZkT/${d//\\//_}.stamp; [ ! -d $d ] || [ `stat -c %Y $d` = `stat -c %Y $s` ]; done'], kind short, sout raw, serr raw, env [] 116s autopkgtest: DBG: testbed command exited with code 1 116s autopkgtest [12:55:01]: rebooting testbed after setup commands that affected boot 116s autopkgtest: DBG: sending command to testbed: reboot 125s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 131s autopkgtest: DBG: got reply from testbed: ok 131s autopkgtest: DBG: testbed supports reboot, creating /tmp/autopkgtest-reboot 131s autopkgtest: DBG: testbed command ['mkdir', '-p', '/tmp/autopkgtest.ynjZkT'], kind short, sout raw, serr pipe, env [] 132s autopkgtest: DBG: testbed command exited with code 0 132s autopkgtest: DBG: sending command to testbed: copydown /home/ubuntu/autopkgtest/lib/in-testbed/reboot.sh /tmp/autopkgtest.ynjZkT/autopkgtest-reboot 132s autopkgtest: DBG: got reply from testbed: ok 132s autopkgtest: DBG: testbed command ['chmod', '-R', '0755', '--', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot'], kind short, sout raw, serr pipe, env [] 132s autopkgtest: DBG: testbed command exited with code 0 132s autopkgtest: DBG: testbed command ['ln', '-fns', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot', '/tmp/autopkgtest-reboot'], kind short, sout raw, serr pipe, env [] 132s autopkgtest: DBG: testbed command exited with code 0 132s autopkgtest: DBG: testbed command ['ln', '-fns', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot', '/sbin/autopkgtest-reboot'], kind short, sout raw, serr pipe, env [] 132s autopkgtest: DBG: testbed command exited with code 0 132s autopkgtest: DBG: testbed command ['mkdir', '-p', '/tmp/autopkgtest.ynjZkT'], kind short, sout raw, serr pipe, env [] 132s autopkgtest: DBG: testbed command exited with code 0 132s autopkgtest: DBG: sending command to testbed: copydown /home/ubuntu/autopkgtest/lib/in-testbed/reboot-prepare.sh /tmp/autopkgtest.ynjZkT/autopkgtest-reboot-prepare 133s autopkgtest: DBG: got reply from testbed: ok 133s autopkgtest: DBG: testbed command ['chmod', '-R', '0755', '--', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot-prepare'], kind short, sout raw, serr pipe, env [] 133s autopkgtest: DBG: testbed command exited with code 0 133s autopkgtest: DBG: testbed command ['ln', '-fns', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot-prepare', '/tmp/autopkgtest-reboot-prepare'], kind short, sout raw, serr pipe, env [] 133s autopkgtest: DBG: testbed command exited with code 0 133s autopkgtest: DBG: testbed command ['uname', '-srv'], kind short, sout pipe, serr pipe, env [] 133s autopkgtest: DBG: testbed command exited with code 0 133s autopkgtest [12:55:18]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 15:05:57 UTC 2025 133s autopkgtest: DBG: testbed command ['sh', '-c', 'nproc; cat /proc/cpuinfo 2>/dev/null || true'], kind short, sout pipe, serr pipe, env [] 133s autopkgtest: DBG: testbed command exited with code 0 133s autopkgtest: DBG: testbed command ['sh', '-ec', "dpkg-query --show -f '${Package}\\t${Version}\\n' > /tmp/autopkgtest.ynjZkT/testbed-packages"], kind short, sout raw, serr pipe, env [] 133s autopkgtest: DBG: testbed command exited with code 0 133s autopkgtest: DBG: sending command to testbed: copyup /tmp/autopkgtest.ynjZkT/testbed-packages /tmp/autopkgtest-work.8283qf8o/out/testbed-packages 134s autopkgtest: DBG: got reply from testbed: ok 134s autopkgtest: DBG: testbed supports reboot, creating /tmp/autopkgtest-reboot 134s autopkgtest: DBG: testbed command ['mkdir', '-p', '/tmp/autopkgtest.ynjZkT'], kind short, sout raw, serr pipe, env [] 134s autopkgtest: DBG: testbed command exited with code 0 134s autopkgtest: DBG: sending command to testbed: copydown /home/ubuntu/autopkgtest/lib/in-testbed/reboot.sh /tmp/autopkgtest.ynjZkT/autopkgtest-reboot 134s autopkgtest: DBG: got reply from testbed: ok 134s autopkgtest: DBG: testbed command ['chmod', '-R', '0755', '--', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot'], kind short, sout raw, serr pipe, env [] 134s autopkgtest: DBG: testbed command exited with code 0 134s autopkgtest: DBG: testbed command ['ln', '-fns', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot', '/tmp/autopkgtest-reboot'], kind short, sout raw, serr pipe, env [] 134s autopkgtest: DBG: testbed command exited with code 0 134s autopkgtest: DBG: testbed command ['ln', '-fns', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot', '/sbin/autopkgtest-reboot'], kind short, sout raw, serr pipe, env [] 135s autopkgtest: DBG: testbed command exited with code 0 135s autopkgtest: DBG: testbed command ['mkdir', '-p', '/tmp/autopkgtest.ynjZkT'], kind short, sout raw, serr pipe, env [] 135s autopkgtest: DBG: testbed command exited with code 0 135s autopkgtest: DBG: sending command to testbed: copydown /home/ubuntu/autopkgtest/lib/in-testbed/reboot-prepare.sh /tmp/autopkgtest.ynjZkT/autopkgtest-reboot-prepare 135s autopkgtest: DBG: got reply from testbed: ok 135s autopkgtest: DBG: testbed command ['chmod', '-R', '0755', '--', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot-prepare'], kind short, sout raw, serr pipe, env [] 135s autopkgtest: DBG: testbed command exited with code 0 135s autopkgtest: DBG: testbed command ['ln', '-fns', '/tmp/autopkgtest.ynjZkT/autopkgtest-reboot-prepare', '/tmp/autopkgtest-reboot-prepare'], kind short, sout raw, serr pipe, env [] 135s autopkgtest: DBG: testbed command exited with code 0 135s autopkgtest: DBG: testbed command ['uname', '-srv'], kind short, sout pipe, serr pipe, env [] 135s autopkgtest: DBG: testbed command exited with code 0 135s autopkgtest: DBG: Binaries: initialising 135s autopkgtest [12:55:20]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 135s autopkgtest: DBG: blame += python-skbio 135s autopkgtest: DBG: testbed reset: modified=False, deps_installed=[], deps_new=[] 135s autopkgtest: DBG: testbed command ['apt-cache', 'showsrc', '--only-source', 'python-skbio'], kind short, sout pipe, serr pipe, env [] 136s autopkgtest: DBG: testbed command exited with code 0 136s autopkgtest: DBG: testbed command ['apt-cache', 'policy', '^python-skbio-doc$'], kind short, sout pipe, serr raw, env [] 136s autopkgtest: DBG: testbed command exited with code 0 136s autopkgtest: DBG: testbed command ['apt-cache', 'show', 'python-skbio-doc=0.6.2-4build1'], kind short, sout pipe, serr raw, env [] 136s autopkgtest: DBG: testbed command exited with code 0 136s autopkgtest: DBG: testbed command ['apt-cache', 'policy', '^python3-skbio$'], kind short, sout pipe, serr raw, env [] 136s autopkgtest: DBG: testbed command exited with code 0 136s autopkgtest: DBG: install_deps: deps_new=[] 136s autopkgtest: DBG: testbed command ['sh', '-ec', 'command -v dpkg-source'], kind short, sout pipe, serr pipe, env [] 137s autopkgtest: DBG: testbed command exited with code 0 137s autopkgtest: DBG: testbed command ['sh', '-ec', 'su --shell=/bin/sh ubuntu -c \'set -e; exec 3>&1 >&2; set -x; cd /; builddir=$(mktemp -d /tmp/autopkgtest.ynjZkT/build.XXX); cd $builddir; OUT=$(apt-get source -d -q --only-source python-skbio=0.6.2-4build1 2>&1) || RC=$?;if [ -n "$RC" ]; then if echo "$OUT" | grep -q "Unable to find a source package"; then exit 1; else exit $RC; fi;fi;echo "$OUT" | grep ^Get: || true;dpkg-source -x python-skbio_*.dsc src >/dev/null; chmod -R a+rX .; cd [a-z0-9]*/.; pwd >&3; sed -n "1 {s/).*//; s/ (/\\n/; p}" debian/changelog >&3\''], kind build, sout pipe, serr raw, env ['ADT_TEST_TRIGGERS=sphinx/8.1.3-5'] 137s + cd / 137s + mktemp -d /tmp/autopkgtest.ynjZkT/build.XXX 137s + builddir=/tmp/autopkgtest.ynjZkT/build.ADP 137s + cd /tmp/autopkgtest.ynjZkT/build.ADP 137s + apt-get source -d -q --only-source python-skbio=0.6.2-4build1 138s + OUT=Reading package lists... 138s NOTICE: 'python-skbio' packaging is maintained in the 'Git' version control system at: 138s https://salsa.debian.org/med-team/python-skbio.git 138s Please use: 138s git clone https://salsa.debian.org/med-team/python-skbio.git 138s to retrieve the latest (possibly unreleased) updates to the package. 138s Need to get 2219 kB of source archives. 138s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (dsc) [2921 B] 138s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (tar) [2204 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (diff) [12.0 kB] 138s Fetched 2219 kB in 1s (1763 kB/s) 138s Download complete and in download only mode 138s + [ -n ] 138s + echo Reading package lists... 138s NOTICE: 'python-skbio' packaging is maintained in the 'Git' version control system at: 138s https://salsa.debian.org/med-team/python-skbio.git 138s Please use: 138s git clone https://salsa.debian.org/med-team/python-skbio.git 138s to retrieve the latest (possibly unreleased) updates to the package. 138s Need to get 2219 kB of source archives. 138s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (dsc) [2921 B] 138s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (tar) [2204 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (diff) [12.0 kB] 138s Fetched 2219 kB in 1s (1763 kB/s) 138s Download complete and in download only mode 138s + grep ^Get: 138s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (dsc) [2921 B] 138s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (tar) [2204 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-skbio 0.6.2-4build1 (diff) [12.0 kB] 138s + dpkg-source -x python-skbio_0.6.2-4build1.dsc src 138s gpgv: Signature made Fri Jan 31 09:41:17 2025 UTC 138s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 138s gpgv: Can't check signature: No public key 138s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.6.2-4build1.dsc: no acceptable signature found 138s + chmod -R a+rX . 138s + cd src/. 138s + pwd 138s + sed -n 1 {s/).*//; s/ (/\n/; p} debian/changelog 138s autopkgtest: DBG: testbed command exited with code 0 138s autopkgtest [12:55:23]: testing package python-skbio version 0.6.2-4build1 138s autopkgtest: DBG: sending command to testbed: copyup /tmp/autopkgtest.ynjZkT/build.ADP/src/debian/ /tmp/autopkgtest-work.8283qf8o/out/pkg/debian/ 139s autopkgtest: DBG: got reply from testbed: ok 139s autopkgtest: DBG: autodep8 generated control: ----- 139s Test-Command: pybuild-autopkgtest 139s Depends: @, pybuild-plugin-autopkgtest, @builddeps@, 139s Restrictions: allow-stderr, skippable, 139s Features: test-name=pybuild-autopkgtest 139s 139s ------- 139s autopkgtest: DBG: processing dependency @ 139s autopkgtest: DBG: synthesised dependency python-skbio-doc 139s autopkgtest: DBG: synthesised dependency python3-skbio 139s autopkgtest: DBG: processing dependency pybuild-plugin-autopkgtest 139s autopkgtest: DBG: processing dependency @builddeps@ 139s autopkgtest: DBG: synthesised dependency debhelper-compat (= 13) 139s autopkgtest: DBG: synthesised dependency cython3 (>= 3) 139s autopkgtest: DBG: synthesised dependency dh-sequence-python3 139s autopkgtest: DBG: synthesised dependency python3-all-dev 139s autopkgtest: DBG: synthesised dependency python3-biom-format 139s autopkgtest: DBG: synthesised dependency python3-setuptools 139s autopkgtest: DBG: synthesised dependency python3-numpy 139s autopkgtest: DBG: synthesised dependency python3-matplotlib 139s autopkgtest: DBG: synthesised dependency python3-cachecontrol 139s autopkgtest: DBG: synthesised dependency python3-decorator 139s autopkgtest: DBG: synthesised dependency python3-h5py 139s autopkgtest: DBG: synthesised dependency python3-pandas 139s autopkgtest: DBG: synthesised dependency python3-scipy (>= 1.9) 139s autopkgtest: DBG: synthesised dependency python3-ipython 139s autopkgtest: DBG: synthesised dependency python3-hdmedians 139s autopkgtest: DBG: synthesised dependency python3-sklearn 139s autopkgtest: DBG: synthesised dependency python3-natsort 139s autopkgtest: DBG: synthesised dependency python3-statsmodels 139s autopkgtest: DBG: synthesised dependency libssw-dev 139s autopkgtest: DBG: synthesised dependency sphinx-common 139s autopkgtest: DBG: synthesised dependency libsimde-dev 139s autopkgtest: DBG: synthesised dependency python3-sphinx 139s autopkgtest: DBG: synthesised dependency python3-sphinx-design 139s autopkgtest: DBG: synthesised dependency python3-sphinx-copybutton 139s autopkgtest: DBG: synthesised dependency python3-pydata-sphinx-theme 139s autopkgtest: DBG: synthesised dependency python3-doc 139s autopkgtest: DBG: synthesised dependency python3-numpydoc 139s autopkgtest: DBG: synthesised dependency python-scipy-doc 139s autopkgtest: DBG: synthesised dependency python-biom-format-doc 139s autopkgtest: DBG: synthesised dependency python-pandas-doc 139s autopkgtest: DBG: synthesised dependency python-numpy-doc 139s autopkgtest: DBG: synthesised dependency python3-pytest 139s autopkgtest: DBG: synthesised dependency architecture-is-64-bit 139s autopkgtest: DBG: synthesised dependency build-essential 139s autopkgtest: DBG: Test defined: name pybuild-autopkgtest path None command "pybuild-autopkgtest" restrictions ['allow-stderr', 'skippable'] features ['test-name=pybuild-autopkgtest'] depends ['python-skbio-doc', 'python3-skbio', 'pybuild-plugin-autopkgtest', 'debhelper-compat (= 13)', 'cython3 (>= 3)', 'dh-sequence-python3', 'python3-all-dev', 'python3-biom-format', 'python3-setuptools', 'python3-numpy', 'python3-matplotlib', 'python3-cachecontrol', 'python3-decorator', 'python3-h5py', 'python3-pandas', 'python3-scipy (>= 1.9)', 'python3-ipython', 'python3-hdmedians', 'python3-sklearn', 'python3-natsort', 'python3-statsmodels', 'libssw-dev', 'sphinx-common', 'libsimde-dev', 'python3-sphinx ', 'python3-sphinx-design ', 'python3-sphinx-copybutton ', 'python3-pydata-sphinx-theme ', 'python3-doc ', 'python3-numpydoc ', 'python-scipy-doc ', 'python-biom-format-doc ', 'python-pandas-doc ', 'python-numpy-doc ', 'python3-pytest ', 'architecture-is-64-bit', 'build-essential'] 139s autopkgtest [12:55:24]: build not needed 139s autopkgtest: DBG: sending command to testbed: copyup /tmp/autopkgtest.ynjZkT/build.ADP/src/ /tmp/autopkgtest-work.8283qf8o/out/tests-tree/ 139s autopkgtest: DBG: got reply from testbed: ok 139s autopkgtest: DBG: autodep8 generated control: ----- 139s Test-Command: pybuild-autopkgtest 139s Depends: @, pybuild-plugin-autopkgtest, @builddeps@, 139s Restrictions: allow-stderr, skippable, 139s Features: test-name=pybuild-autopkgtest 139s 139s ------- 139s autopkgtest: DBG: processing dependency @ 139s autopkgtest: DBG: synthesised dependency python-skbio-doc 139s autopkgtest: DBG: synthesised dependency python3-skbio 139s autopkgtest: DBG: processing dependency pybuild-plugin-autopkgtest 139s autopkgtest: DBG: processing dependency @builddeps@ 139s autopkgtest: DBG: synthesised dependency debhelper-compat (= 13) 139s autopkgtest: DBG: synthesised dependency cython3 (>= 3) 139s autopkgtest: DBG: synthesised dependency dh-sequence-python3 139s autopkgtest: DBG: synthesised dependency python3-all-dev 139s autopkgtest: DBG: synthesised dependency python3-biom-format 139s autopkgtest: DBG: synthesised dependency python3-setuptools 139s autopkgtest: DBG: synthesised dependency python3-numpy 139s autopkgtest: DBG: synthesised dependency python3-matplotlib 139s autopkgtest: DBG: synthesised dependency python3-cachecontrol 139s autopkgtest: DBG: synthesised dependency python3-decorator 139s autopkgtest: DBG: synthesised dependency python3-h5py 139s autopkgtest: DBG: synthesised dependency python3-pandas 139s autopkgtest: DBG: synthesised dependency python3-scipy (>= 1.9) 139s autopkgtest: DBG: synthesised dependency python3-ipython 139s autopkgtest: DBG: synthesised dependency python3-hdmedians 139s autopkgtest: DBG: synthesised dependency python3-sklearn 139s autopkgtest: DBG: synthesised dependency python3-natsort 139s autopkgtest: DBG: synthesised dependency python3-statsmodels 139s autopkgtest: DBG: synthesised dependency libssw-dev 139s autopkgtest: DBG: synthesised dependency sphinx-common 139s autopkgtest: DBG: synthesised dependency libsimde-dev 139s autopkgtest: DBG: synthesised dependency python3-sphinx 139s autopkgtest: DBG: synthesised dependency python3-sphinx-design 139s autopkgtest: DBG: synthesised dependency python3-sphinx-copybutton 139s autopkgtest: DBG: synthesised dependency python3-pydata-sphinx-theme 139s autopkgtest: DBG: synthesised dependency python3-doc 139s autopkgtest: DBG: synthesised dependency python3-numpydoc 139s autopkgtest: DBG: synthesised dependency python-scipy-doc 139s autopkgtest: DBG: synthesised dependency python-biom-format-doc 139s autopkgtest: DBG: synthesised dependency python-pandas-doc 139s autopkgtest: DBG: synthesised dependency python-numpy-doc 139s autopkgtest: DBG: synthesised dependency python3-pytest 139s autopkgtest: DBG: synthesised dependency architecture-is-64-bit 139s autopkgtest: DBG: synthesised dependency build-essential 139s autopkgtest: DBG: Test defined: name pybuild-autopkgtest path None command "pybuild-autopkgtest" restrictions ['allow-stderr', 'skippable'] features ['test-name=pybuild-autopkgtest'] depends ['python-skbio-doc', 'python3-skbio', 'pybuild-plugin-autopkgtest', 'debhelper-compat (= 13)', 'cython3 (>= 3)', 'dh-sequence-python3', 'python3-all-dev', 'python3-biom-format', 'python3-setuptools', 'python3-numpy', 'python3-matplotlib', 'python3-cachecontrol', 'python3-decorator', 'python3-h5py', 'python3-pandas', 'python3-scipy (>= 1.9)', 'python3-ipython', 'python3-hdmedians', 'python3-sklearn', 'python3-natsort', 'python3-statsmodels', 'libssw-dev', 'sphinx-common', 'libsimde-dev', 'python3-sphinx ', 'python3-sphinx-design ', 'python3-sphinx-copybutton ', 'python3-pydata-sphinx-theme ', 'python3-doc ', 'python3-numpydoc ', 'python-scipy-doc ', 'python-biom-format-doc ', 'python-pandas-doc ', 'python-numpy-doc ', 'python3-pytest ', 'architecture-is-64-bit', 'build-essential'] 139s autopkgtest [12:55:24]: test pybuild-autopkgtest: preparing testbed 139s autopkgtest: DBG: testbed reset: modified=False, deps_installed=[], deps_new=['python-skbio-doc', 'python3-skbio', 'pybuild-plugin-autopkgtest', 'debhelper-compat (= 13)', 'cython3 (>= 3)', 'dh-sequence-python3', 'python3-all-dev', 'python3-biom-format', 'python3-setuptools', 'python3-numpy', 'python3-matplotlib', 'python3-cachecontrol', 'python3-decorator', 'python3-h5py', 'python3-pandas', 'python3-scipy (>= 1.9)', 'python3-ipython', 'python3-hdmedians', 'python3-sklearn', 'python3-natsort', 'python3-statsmodels', 'libssw-dev', 'sphinx-common', 'libsimde-dev', 'python3-sphinx ', 'python3-sphinx-design ', 'python3-sphinx-copybutton ', 'python3-pydata-sphinx-theme ', 'python3-doc ', 'python3-numpydoc ', 'python-scipy-doc ', 'python-biom-format-doc ', 'python-pandas-doc ', 'python-numpy-doc ', 'python3-pytest ', 'architecture-is-64-bit', 'build-essential'] 139s autopkgtest: DBG: Binaries: no registered binaries, not publishing anything 139s autopkgtest: DBG: install_deps: deps_new=['python-skbio-doc', 'python3-skbio', 'pybuild-plugin-autopkgtest', 'debhelper-compat (= 13)', 'cython3 (>= 3)', 'dh-sequence-python3', 'python3-all-dev', 'python3-biom-format', 'python3-setuptools', 'python3-numpy', 'python3-matplotlib', 'python3-cachecontrol', 'python3-decorator', 'python3-h5py', 'python3-pandas', 'python3-scipy (>= 1.9)', 'python3-ipython', 'python3-hdmedians', 'python3-sklearn', 'python3-natsort', 'python3-statsmodels', 'libssw-dev', 'sphinx-common', 'libsimde-dev', 'python3-sphinx ', 'python3-sphinx-design ', 'python3-sphinx-copybutton ', 'python3-pydata-sphinx-theme ', 'python3-doc ', 'python3-numpydoc ', 'python-scipy-doc ', 'python-biom-format-doc ', 'python-pandas-doc ', 'python-numpy-doc ', 'python3-pytest ', 'architecture-is-64-bit', 'build-essential'] 139s autopkgtest: DBG: install-deps: satisfying python-skbio-doc, python3-skbio, pybuild-plugin-autopkgtest, debhelper-compat (= 13), cython3 (>= 3), dh-sequence-python3, python3-all-dev, python3-biom-format, python3-setuptools, python3-numpy, python3-matplotlib, python3-cachecontrol, python3-decorator, python3-h5py, python3-pandas, python3-scipy (>= 1.9), python3-ipython, python3-hdmedians, python3-sklearn, python3-natsort, python3-statsmodels, libssw-dev, sphinx-common, libsimde-dev, python3-sphinx , python3-sphinx-design , python3-sphinx-copybutton , python3-pydata-sphinx-theme , python3-doc , python3-numpydoc , python-scipy-doc , python-biom-format-doc , python-pandas-doc , python-numpy-doc , python3-pytest , architecture-is-64-bit, build-essential 139s autopkgtest: DBG: can use apt-get on testbed: True 139s autopkgtest: DBG: testbed command ['/bin/sh', '-ec', '"$@" 3>&2 2>&1', 'run_apt_command', '/usr/bin/eatmydata', 'apt-get', '--quiet', '--assume-yes', '-o=APT::Status-Fd=3', '-o=APT::Install-Recommends=false', '-o=Dpkg::Options::=--force-confnew', '-o=Debug::pkgProblemResolver=true', 'satisfy', 'python-skbio-doc, python3-skbio, pybuild-plugin-autopkgtest, debhelper-compat (= 13), cython3 (>= 3), dh-sequence-python3, python3-all-dev, python3-biom-format, python3-setuptools, python3-numpy, python3-matplotlib, python3-cachecontrol, python3-decorator, python3-h5py, python3-pandas, python3-scipy (>= 1.9), python3-ipython, python3-hdmedians, python3-sklearn, python3-natsort, python3-statsmodels, libssw-dev, sphinx-common, libsimde-dev, python3-sphinx , python3-sphinx-design , python3-sphinx-copybutton , python3-pydata-sphinx-theme , python3-doc , python3-numpydoc , python-scipy-doc , python-biom-format-doc , python-pandas-doc , python-numpy-doc , python3-pytest , architecture-is-64-bit, build-essential'], kind install, sout raw, serr pipe, env ['DEBIAN_FRONTEND=noninteractive', 'APT_LISTBUGS_FRONTEND=none', 'APT_LISTCHANGES_FRONTEND=none'] 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Starting pkgProblemResolver with broken count: 1 140s Starting 2 pkgProblemResolver with broken count: 1 140s Investigating (0) satisfy:command-line:s390x < none -> 1 @un puN Ib > 140s Broken satisfy:command-line:s390x Depends on python-skbio-doc:s390x < none | 0.6.2-4build1 @un uH > 140s Considering python-skbio-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libjs-jquery:s390x 140s Re-Instated libjs-underscore:s390x 140s Re-Instated libjs-sphinxdoc:s390x 140s Re-Instated fonts-mathjax:s390x 140s Re-Instated libjs-mathjax:s390x 140s Re-Instated python-skbio-doc:s390x 140s Broken satisfy:command-line:s390x Depends on python3-skbio:s390x < none @un H > 140s Broken satisfy:command-line:s390x Depends on pybuild-plugin-autopkgtest:s390x < none | 6.20250108 @un uH > 140s Considering pybuild-plugin-autopkgtest:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated m4:s390x 140s Re-Instated autoconf:s390x 140s Re-Instated autotools-dev:s390x 140s Re-Instated automake:s390x 140s Re-Instated autopoint:s390x 140s Re-Instated libdebhelper-perl:s390x 140s Re-Instated libisl23:s390x 140s Re-Instated libmpc3:s390x 140s Re-Instated cpp-14-s390x-linux-gnu:s390x 140s Re-Instated cpp-14:s390x 140s Re-Instated cpp-s390x-linux-gnu:s390x 140s Re-Instated cpp:s390x 140s Re-Instated libcc1-0:s390x 140s Re-Instated libgomp1:s390x 140s Re-Instated libitm1:s390x 140s Re-Instated libasan8:s390x 140s Re-Instated libubsan1:s390x 140s Re-Instated libgcc-14-dev:s390x 140s Re-Instated gcc-14-s390x-linux-gnu:s390x 140s Re-Instated gcc-14:s390x 140s Re-Instated gcc-s390x-linux-gnu:s390x 140s Re-Instated gcc:s390x 140s Re-Instated libtool:s390x 140s Re-Instated dh-autoreconf:s390x 140s Re-Instated libarchive-zip-perl:s390x 140s Re-Instated libfile-stripnondeterminism-perl:s390x 140s Re-Instated dh-strip-nondeterminism:s390x 140s Re-Instated debugedit:s390x 140s Re-Instated dwz:s390x 140s Re-Instated gettext:s390x 140s Re-Instated intltool-debian:s390x 140s Re-Instated po-debconf:s390x 140s Re-Instated debhelper:s390x 140s Re-Instated dh-python:s390x 140s Re-Instated pybuild-plugin-autopkgtest:s390x 140s Broken satisfy:command-line:s390x Depends on cython3:s390x < none | 3.0.11+dfsg-2ubuntu1 @un uH > (>= 3) 140s Considering cython3:s390x 0 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated cython3:s390x 140s Broken satisfy:command-line:s390x Depends on python3-all-dev:s390x < none | 3.13.1-1~exp2 @un uH > 140s Considering python3-all-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libexpat1-dev:s390x 140s Re-Instated zlib1g-dev:s390x 140s Re-Instated libpython3.13-dev:s390x 140s Re-Instated libpython3-dev:s390x 140s Re-Instated libpython3.12-minimal:s390x 140s Re-Instated libnsl2:s390x 140s Re-Instated libpython3.12-stdlib:s390x 140s Re-Instated libpython3.12t64:s390x 140s Re-Instated libpython3.12-dev:s390x 140s Re-Instated libpython3-all-dev:s390x 140s Re-Instated python3.12-minimal:s390x 140s Re-Instated python3.12:s390x 140s Re-Instated python3-all:s390x 140s Re-Instated python3.13-dev:s390x 140s Re-Instated python3-dev:s390x 140s Re-Instated python3.12-dev:s390x 140s Re-Instated python3-all-dev:s390x 140s Broken satisfy:command-line:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1build2 @un uH > 140s Considering python3-biom-format:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libblas3:s390x 140s Re-Instated libgfortran5:s390x 140s Re-Instated liblapack3:s390x 140s Re-Instated python3-numpy:s390x 140s Re-Instated libaec0:s390x 140s Re-Instated libsz2:s390x 140s Re-Instated libhdf5-310:s390x 140s Re-Instated libhdf5-hl-310:s390x 140s Re-Instated liblzf1:s390x 140s Re-Instated python3-h5py-serial:s390x 140s Re-Instated python3-h5py:s390x 140s Re-Instated python3-click:s390x 140s Re-Instated python3-dateutil:s390x 140s Re-Instated python3-pytz:s390x 140s Re-Instated python3-tz:s390x 140s Re-Instated python3-pandas-lib:s390x 140s Re-Instated python3-pandas:s390x 140s Re-Instated python3-decorator:s390x 140s Re-Instated liblbfgsb0:s390x 140s Re-Instated python3-scipy:s390x 140s Re-Instated python3-biom-format:s390x 140s Broken satisfy:command-line:s390x Depends on python3-matplotlib:s390x < none | 3.8.3-3ubuntu2 @un uH > 140s Considering python3-matplotlib:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libjs-jquery-ui:s390x 140s Re-Instated fonts-dejavu-mono:s390x 140s Re-Instated fonts-dejavu-core:s390x 140s Re-Instated fonts-lyx:s390x 140s Re-Instated python-matplotlib-data:s390x 140s Re-Instated libfreetype6:s390x 140s Re-Instated libimagequant0:s390x 140s Re-Instated libjpeg-turbo8:s390x 140s Re-Instated libjpeg8:s390x 140s Re-Instated liblcms2-2:s390x 140s Re-Instated libopenjp2-7:s390x 140s Re-Instated libgraphite2-3:s390x 140s Re-Instated libharfbuzz0b:s390x 140s Re-Instated libraqm0:s390x 140s Re-Instated libdeflate0:s390x 140s Re-Instated libjbig0:s390x 140s Re-Instated libsharpyuv0:s390x 140s Re-Instated libwebp7:s390x 140s Re-Instated libtiff6:s390x 140s Re-Instated libwebpdemux2:s390x 140s Re-Instated libwebpmux3:s390x 140s Re-Instated python3-pil:s390x 140s Re-Instated libtcl8.6:s390x 140s Re-Instated fontconfig-config:s390x 140s Re-Instated libfontconfig1:s390x 140s Re-Instated libxrender1:s390x 140s Re-Instated libxft2:s390x 140s Re-Instated x11-common:s390x 140s Re-Instated libxss1:s390x 140s Re-Instated libtk8.6:s390x 140s Re-Instated python3.12-tk:s390x 140s Re-Instated python3.13-tk:s390x 140s Re-Instated tk8.6-blt2.5:s390x 140s Re-Instated blt:s390x 140s Re-Instated python3-tk:s390x 140s Re-Instated python3-pil.imagetk:s390x 140s Re-Instated python3-contourpy:s390x 140s Re-Instated python3-cycler:s390x 140s Re-Instated python3-brotli:s390x 140s Re-Instated python3-platformdirs:s390x 140s Re-Instated python3-fs:s390x 140s Re-Instated libxslt1.1:s390x 140s Re-Instated python3-lxml:s390x 140s Re-Instated python3-lz4:s390x 140s Re-Instated python3-mpmath:s390x 140s Re-Instated python3-sympy:s390x 140s Re-Instated python3-ufolib2:s390x 140s Re-Instated unicode-data:s390x 140s Re-Instated python3-fonttools:s390x 140s Re-Instated python3-kiwisolver:s390x 140s Re-Instated python3-packaging:s390x 140s Re-Instated libqhull-r8.0:s390x 140s Re-Instated python3-matplotlib:s390x 140s Broken satisfy:command-line:s390x Depends on python3-cachecontrol:s390x < none | 0.14.2-1 @un uH > 140s Considering python3-cachecontrol:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-msgpack:s390x 140s Re-Instated python3-cachecontrol:s390x 140s Broken satisfy:command-line:s390x Depends on python3-ipython:s390x < none | 8.30.0-2 @un uH > 140s Considering python3-ipython:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-parso:s390x 140s Re-Instated python3-typeshed:s390x 140s Re-Instated python3-jedi:s390x 140s Re-Instated python3-traitlets:s390x 140s Re-Instated python3-matplotlib-inline:s390x 140s Re-Instated python3-wcwidth:s390x 140s Re-Instated python3-prompt-toolkit:s390x 140s Re-Instated python3-asttokens:s390x 140s Re-Instated python3-executing:s390x 140s Re-Instated python3-pure-eval:s390x 140s Re-Instated python3-stack-data:s390x 140s Re-Instated python3-ptyprocess:s390x 140s Re-Instated python3-pexpect:s390x 140s Re-Instated python3-ipython:s390x 140s Broken satisfy:command-line:s390x Depends on python3-hdmedians:s390x < none | 0.14.2-6 @un uH > 140s Considering python3-hdmedians:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-hdmedians:s390x 140s Broken satisfy:command-line:s390x Depends on python3-sklearn:s390x < none | 1.4.2+dfsg-7build1 @un uH > 140s Considering python3-sklearn:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-joblib:s390x 140s Re-Instated python3-threadpoolctl:s390x 140s Re-Instated python3-sklearn-lib:s390x 140s Re-Instated python3-sklearn:s390x 140s Broken satisfy:command-line:s390x Depends on python3-natsort:s390x < none | 8.0.2-2 @un uH > 140s Considering python3-natsort:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-natsort:s390x 140s Broken satisfy:command-line:s390x Depends on python3-statsmodels:s390x < none | 0.14.4+dfsg-1build2 @un uH > 140s Considering python3-statsmodels:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-patsy:s390x 140s Re-Instated python3-statsmodels-lib:s390x 140s Re-Instated python3-statsmodels:s390x 140s Broken satisfy:command-line:s390x Depends on libssw-dev:s390x < none | 1.1-15 @un uH > 140s Considering libssw-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libssw0:s390x 140s Re-Instated libssw-dev:s390x 140s Broken satisfy:command-line:s390x Depends on sphinx-common:s390x < none | 8.1.3-5 @un uH > 140s Considering sphinx-common:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libjson-perl:s390x 140s Re-Instated sphinx-common:s390x 140s Broken satisfy:command-line:s390x Depends on libsimde-dev:s390x < none | 0.8.2-1 @un uH > 140s Considering libsimde-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libsimde-dev:s390x 140s Broken satisfy:command-line:s390x Depends on python3-sphinx:s390x < none | 8.1.3-5 @un uH > 140s Considering python3-sphinx:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-defusedxml:s390x 140s Re-Instated python3-alabaster:s390x 140s Re-Instated sgml-base:s390x 140s Re-Instated xml-core:s390x 140s Re-Instated docutils-common:s390x 140s Re-Instated python3-roman:s390x 140s Re-Instated python3-docutils:s390x 140s Re-Instated python3-imagesize:s390x 140s Re-Instated python3-snowballstemmer:s390x 140s Re-Instated python3-sphinx:s390x 140s Broken satisfy:command-line:s390x Depends on python3-sphinx-design:s390x < none | 0.6.1-1 @un uH > 140s Considering python3-sphinx-design:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-sphinx-design:s390x 140s Broken satisfy:command-line:s390x Depends on python3-sphinx-copybutton:s390x < none | 0.5.2-2 @un uH > 140s Considering python3-sphinx-copybutton:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-sphinx-copybutton:s390x 140s Broken satisfy:command-line:s390x Depends on python3-pydata-sphinx-theme:s390x < none | 0.16.1+dfsg-1 @un uH > 140s Considering python3-pydata-sphinx-theme:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated node-fortawesome-fontawesome-free:s390x 140s Re-Instated python3-accessible-pygments:s390x 140s Re-Instated python3-soupsieve:s390x 140s Re-Instated python3-bs4:s390x 140s Re-Instated python3-pydata-sphinx-theme:s390x 140s Broken satisfy:command-line:s390x Depends on python3-doc:s390x < none | 3.13.1-1~exp2 @un uH > 140s Considering python3-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3.13-doc:s390x 140s Re-Instated python3-doc:s390x 140s Broken satisfy:command-line:s390x Depends on python3-numpydoc:s390x < none | 1.8.0-1 @un uH > 140s Considering python3-numpydoc:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-tabulate:s390x 140s Re-Instated python3-numpydoc:s390x 140s Broken satisfy:command-line:s390x Depends on python-scipy-doc:s390x < none | 1.14.1-4ubuntu1 @un uH > 140s Considering python-scipy-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated fonts-open-sans:s390x 140s Re-Instated python-scipy-doc:s390x 140s Broken satisfy:command-line:s390x Depends on python-biom-format-doc:s390x < none | 2.1.16-1build2 @un uH > 140s Considering python-biom-format-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python-biom-format-doc:s390x 140s Broken satisfy:command-line:s390x Depends on python-pandas-doc:s390x < none | 2.2.3+dfsg-8 @un uH > 140s Considering python-pandas-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python-pandas-doc:s390x 140s Broken satisfy:command-line:s390x Depends on python-numpy-doc:s390x < none | 1:1.26.4+ds-13 @un uH > 140s Considering python-numpy-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python-numpy-doc:s390x 140s Broken satisfy:command-line:s390x Depends on python3-pytest:s390x < none | 8.3.4-1 @un uH > 140s Considering python3-pytest:s390x 1 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated python3-iniconfig:s390x 140s Re-Instated python3-pluggy:s390x 140s Re-Instated python3-pytest:s390x 140s Broken satisfy:command-line:s390x Depends on architecture-is-64-bit:s390x < none @un H > 140s Considering architecture-properties:s390x 0 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated architecture-properties:s390x 140s Broken satisfy:command-line:s390x Depends on build-essential:s390x < none | 12.10ubuntu1 @un uH > 140s Considering build-essential:s390x 2 as a solution to satisfy:command-line:s390x 9998 140s Re-Instated libstdc++-14-dev:s390x 140s Re-Instated g++-14-s390x-linux-gnu:s390x 140s Re-Instated g++-14:s390x 140s Re-Instated g++-s390x-linux-gnu:s390x 140s Re-Instated g++:s390x 140s Re-Instated build-essential:s390x 140s Done 140s Some packages could not be installed. This may mean that you have 140s requested an impossible situation or if you are using the unstable 140s distribution that some required packages have not yet been created 140s or been moved out of Incoming. 140s The following information may help to resolve the situation: 140s 140s The following packages have unmet dependencies: 140s satisfy:command-line : Depends: python3-skbio but it is not installable 140s E: Unable to correct problems, you have held broken packages. 140s autopkgtest: DBG: testbed command exited with code 100 140s autopkgtest: DBG: apt-get satisfy failed; status-fd: 140s 140s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 140s autopkgtest: DBG: testbed command ['rm', '/etc/apt/preferences.d/autopkgtest-plucky-proposed.pref'], kind short, sout raw, serr pipe, env [] 140s autopkgtest: DBG: testbed command exited with code 0 140s autopkgtest: DBG: testbed command ['/bin/sh', '-ec', '"$@" 3>&2 2>&1', 'run_apt_command', '/usr/bin/eatmydata', 'apt-get', '--quiet', '--assume-yes', '-o=APT::Status-Fd=3', '-o=APT::Install-Recommends=false', '-o=Dpkg::Options::=--force-confnew', '-o=Debug::pkgProblemResolver=true', 'satisfy', 'python-skbio-doc, python3-skbio, pybuild-plugin-autopkgtest, debhelper-compat (= 13), cython3 (>= 3), dh-sequence-python3, python3-all-dev, python3-biom-format, python3-setuptools, python3-numpy, python3-matplotlib, python3-cachecontrol, python3-decorator, python3-h5py, python3-pandas, python3-scipy (>= 1.9), python3-ipython, python3-hdmedians, python3-sklearn, python3-natsort, python3-statsmodels, libssw-dev, sphinx-common, libsimde-dev, python3-sphinx , python3-sphinx-design , python3-sphinx-copybutton , python3-pydata-sphinx-theme , python3-doc , python3-numpydoc , python-scipy-doc , python-biom-format-doc , python-pandas-doc , python-numpy-doc , python3-pytest , architecture-is-64-bit, build-essential'], kind install, sout raw, serr pipe, env ['DEBIAN_FRONTEND=noninteractive', 'APT_LISTBUGS_FRONTEND=none', 'APT_LISTCHANGES_FRONTEND=none'] 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Starting pkgProblemResolver with broken count: 1 141s Starting 2 pkgProblemResolver with broken count: 1 141s Investigating (0) satisfy:command-line:s390x < none -> 1 @un puN Ib > 141s Broken satisfy:command-line:s390x Depends on python-skbio-doc:s390x < none | 0.6.2-4build1 @un uH > 141s Considering python-skbio-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated libjs-jquery:s390x 141s Re-Instated libjs-underscore:s390x 141s Re-Instated libjs-sphinxdoc:s390x 141s Re-Instated fonts-mathjax:s390x 141s Re-Instated libjs-mathjax:s390x 141s Re-Instated python-skbio-doc:s390x 141s Broken satisfy:command-line:s390x Depends on python3-skbio:s390x < none @un H > 141s Broken satisfy:command-line:s390x Depends on pybuild-plugin-autopkgtest:s390x < none | 6.20250108 @un uH > 141s Considering pybuild-plugin-autopkgtest:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated m4:s390x 141s Re-Instated autoconf:s390x 141s Re-Instated autotools-dev:s390x 141s Re-Instated automake:s390x 141s Re-Instated autopoint:s390x 141s Re-Instated libdebhelper-perl:s390x 141s Re-Instated gcc-14-base:s390x 141s Re-Instated libisl23:s390x 141s Re-Instated libmpc3:s390x 141s Re-Instated cpp-14-s390x-linux-gnu:s390x 141s Re-Instated cpp-14:s390x 141s Re-Instated cpp-s390x-linux-gnu:s390x 141s Re-Instated cpp:s390x 141s Re-Instated libcc1-0:s390x 141s Re-Instated libgomp1:s390x 141s Re-Instated libitm1:s390x 141s Re-Instated libasan8:s390x 141s Re-Instated libubsan1:s390x 141s Re-Instated libgcc-14-dev:s390x 141s Re-Instated gcc-14-s390x-linux-gnu:s390x 141s Re-Instated gcc-14:s390x 141s Re-Instated gcc-s390x-linux-gnu:s390x 141s Re-Instated gcc:s390x 141s Re-Instated libtool:s390x 141s Re-Instated dh-autoreconf:s390x 141s Re-Instated libarchive-zip-perl:s390x 141s Re-Instated libfile-stripnondeterminism-perl:s390x 141s Re-Instated dh-strip-nondeterminism:s390x 141s Re-Instated debugedit:s390x 141s Re-Instated dwz:s390x 141s Re-Instated gettext:s390x 141s Re-Instated intltool-debian:s390x 141s Re-Instated po-debconf:s390x 141s Re-Instated debhelper:s390x 141s Re-Instated dh-python:s390x 141s Re-Instated pybuild-plugin-autopkgtest:s390x 141s Broken satisfy:command-line:s390x Depends on cython3:s390x < none | 3.0.11+dfsg-2ubuntu1 @un uH > (>= 3) 141s Considering cython3:s390x 0 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated cython3:s390x 141s Broken satisfy:command-line:s390x Depends on python3-all-dev:s390x < none | 3.13.1-1~exp2 @un uH > 141s Considering python3-all-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated libexpat1-dev:s390x 141s Re-Instated zlib1g-dev:s390x 141s Re-Instated libpython3.13-dev:s390x 141s Re-Instated libpython3-dev:s390x 141s Re-Instated libpython3.12-minimal:s390x 141s Re-Instated libnsl2:s390x 141s Re-Instated libpython3.12-stdlib:s390x 141s Re-Instated libpython3.12t64:s390x 141s Re-Instated libpython3.12-dev:s390x 141s Re-Instated libpython3-all-dev:s390x 141s Re-Instated python3.12-minimal:s390x 141s Re-Instated python3.12:s390x 141s Re-Instated python3-all:s390x 141s Re-Instated python3.13-dev:s390x 141s Re-Instated python3-dev:s390x 141s Re-Instated python3.12-dev:s390x 141s Re-Instated python3-all-dev:s390x 141s Broken satisfy:command-line:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1build2 @un uH > 141s Considering python3-biom-format:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-numpy-dev:s390x 141s Re-Instated libblas3:s390x 141s Re-Instated libgfortran5:s390x 141s Re-Instated liblapack3:s390x 141s Re-Instated python3-numpy:s390x 141s Re-Instated libaec0:s390x 141s Re-Instated libsz2:s390x 141s Re-Instated libhdf5-310:s390x 141s Re-Instated libhdf5-hl-310:s390x 141s Re-Instated liblzf1:s390x 141s Re-Instated python3-h5py-serial:s390x 141s Re-Instated python3-h5py:s390x 141s Re-Instated python3-click:s390x 141s Re-Instated python3-dateutil:s390x 141s Re-Instated python3-pytz:s390x 141s Re-Instated python3-tz:s390x 141s Re-Instated python3-pandas-lib:s390x 141s Re-Instated python3-pandas:s390x 141s Re-Instated python3-decorator:s390x 141s Re-Instated liblbfgsb0:s390x 141s Re-Instated python3-scipy:s390x 141s Re-Instated python3-biom-format:s390x 141s Broken satisfy:command-line:s390x Depends on python3-matplotlib:s390x < none | 3.8.3-3ubuntu2 @un uH > 141s Considering python3-matplotlib:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated libjs-jquery-ui:s390x 141s Re-Instated fonts-dejavu-mono:s390x 141s Re-Instated fonts-dejavu-core:s390x 141s Re-Instated fonts-lyx:s390x 141s Re-Instated python-matplotlib-data:s390x 141s Re-Instated libfreetype6:s390x 141s Re-Instated libimagequant0:s390x 141s Re-Instated libjpeg-turbo8:s390x 141s Re-Instated libjpeg8:s390x 141s Re-Instated liblcms2-2:s390x 141s Re-Instated libopenjp2-7:s390x 141s Re-Instated libgraphite2-3:s390x 141s Re-Instated libharfbuzz0b:s390x 141s Re-Instated libraqm0:s390x 141s Re-Instated libdeflate0:s390x 141s Re-Instated libjbig0:s390x 141s Re-Instated libsharpyuv0:s390x 141s Re-Instated libwebp7:s390x 141s Re-Instated libtiff6:s390x 141s Re-Instated libwebpdemux2:s390x 141s Re-Instated libwebpmux3:s390x 141s Re-Instated python3-pil:s390x 141s Re-Instated libtcl8.6:s390x 141s Re-Instated fontconfig-config:s390x 141s Re-Instated libfontconfig1:s390x 141s Re-Instated libxrender1:s390x 141s Re-Instated libxft2:s390x 141s Re-Instated x11-common:s390x 141s Re-Instated libxss1:s390x 141s Re-Instated libtk8.6:s390x 141s Re-Instated python3.12-tk:s390x 141s Re-Instated python3.13-tk:s390x 141s Re-Instated tk8.6-blt2.5:s390x 141s Re-Instated blt:s390x 141s Re-Instated python3-tk:s390x 141s Re-Instated python3-pil.imagetk:s390x 141s Re-Instated python3-contourpy:s390x 141s Re-Instated python3-cycler:s390x 141s Re-Instated python3-brotli:s390x 141s Re-Instated python3-platformdirs:s390x 141s Re-Instated python3-fs:s390x 141s Re-Instated libxslt1.1:s390x 141s Re-Instated python3-lxml:s390x 141s Re-Instated python3-lz4:s390x 141s Re-Instated python3-mpmath:s390x 141s Re-Instated python3-sympy:s390x 141s Re-Instated python3-ufolib2:s390x 141s Re-Instated unicode-data:s390x 141s Re-Instated python3-fonttools:s390x 141s Re-Instated python3-kiwisolver:s390x 141s Re-Instated python3-packaging:s390x 141s Re-Instated libqhull-r8.0:s390x 141s Re-Instated python3-matplotlib:s390x 141s Broken satisfy:command-line:s390x Depends on python3-cachecontrol:s390x < none | 0.14.2-1 @un uH > 141s Considering python3-cachecontrol:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-msgpack:s390x 141s Re-Instated python3-cachecontrol:s390x 141s Broken satisfy:command-line:s390x Depends on python3-ipython:s390x < none | 8.30.0-2 @un uH > 141s Considering python3-ipython:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-parso:s390x 141s Re-Instated python3-typeshed:s390x 141s Re-Instated python3-jedi:s390x 141s Re-Instated python3-traitlets:s390x 141s Re-Instated python3-matplotlib-inline:s390x 141s Re-Instated python3-wcwidth:s390x 141s Re-Instated python3-prompt-toolkit:s390x 141s Re-Instated python3-asttokens:s390x 141s Re-Instated python3-executing:s390x 141s Re-Instated python3-pure-eval:s390x 141s Re-Instated python3-stack-data:s390x 141s Re-Instated python3-ptyprocess:s390x 141s Re-Instated python3-pexpect:s390x 141s Re-Instated python3-ipython:s390x 141s Broken satisfy:command-line:s390x Depends on python3-hdmedians:s390x < none | 0.14.2-6 @un uH > 141s Considering python3-hdmedians:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-hdmedians:s390x 141s Broken satisfy:command-line:s390x Depends on python3-sklearn:s390x < none | 1.4.2+dfsg-7build1 @un uH > 141s Considering python3-sklearn:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-joblib:s390x 141s Re-Instated python3-threadpoolctl:s390x 141s Re-Instated python3-sklearn-lib:s390x 141s Re-Instated python3-sklearn:s390x 141s Broken satisfy:command-line:s390x Depends on python3-natsort:s390x < none | 8.0.2-2 @un uH > 141s Considering python3-natsort:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-natsort:s390x 141s Broken satisfy:command-line:s390x Depends on python3-statsmodels:s390x < none | 0.14.4+dfsg-1build2 @un uH > 141s Considering python3-statsmodels:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-patsy:s390x 141s Re-Instated python3-statsmodels-lib:s390x 141s Re-Instated python3-statsmodels:s390x 141s Broken satisfy:command-line:s390x Depends on libssw-dev:s390x < none | 1.1-15 @un uH > 141s Considering libssw-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated libssw0:s390x 141s Re-Instated libssw-dev:s390x 141s Broken satisfy:command-line:s390x Depends on sphinx-common:s390x < none | 8.1.3-5 @un uH > 141s Considering sphinx-common:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated libjson-perl:s390x 141s Re-Instated sphinx-common:s390x 141s Broken satisfy:command-line:s390x Depends on libsimde-dev:s390x < none | 0.8.2-1 @un uH > 141s Considering libsimde-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated libsimde-dev:s390x 141s Broken satisfy:command-line:s390x Depends on python3-sphinx:s390x < none | 8.1.3-5 @un uH > 141s Considering python3-sphinx:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-defusedxml:s390x 141s Re-Instated python3-alabaster:s390x 141s Re-Instated sgml-base:s390x 141s Re-Instated xml-core:s390x 141s Re-Instated docutils-common:s390x 141s Re-Instated python3-roman:s390x 141s Re-Instated python3-docutils:s390x 141s Re-Instated python3-imagesize:s390x 141s Re-Instated python3-snowballstemmer:s390x 141s Re-Instated python3-sphinx:s390x 141s Broken satisfy:command-line:s390x Depends on python3-sphinx-design:s390x < none | 0.6.1-1 @un uH > 141s Considering python3-sphinx-design:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-sphinx-design:s390x 141s Broken satisfy:command-line:s390x Depends on python3-sphinx-copybutton:s390x < none | 0.5.2-2 @un uH > 141s Considering python3-sphinx-copybutton:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-sphinx-copybutton:s390x 141s Broken satisfy:command-line:s390x Depends on python3-pydata-sphinx-theme:s390x < none | 0.16.1+dfsg-3 @un uH > 141s Considering python3-pydata-sphinx-theme:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated node-fortawesome-fontawesome-free:s390x 141s Re-Instated python3-accessible-pygments:s390x 141s Re-Instated python3-soupsieve:s390x 141s Re-Instated python3-bs4:s390x 141s Re-Instated python3-pydata-sphinx-theme:s390x 141s Broken satisfy:command-line:s390x Depends on python3-doc:s390x < none | 3.13.1-1~exp2 @un uH > 141s Considering python3-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3.13-doc:s390x 141s Re-Instated python3-doc:s390x 141s Broken satisfy:command-line:s390x Depends on python3-numpydoc:s390x < none | 1.8.0-1 @un uH > 141s Considering python3-numpydoc:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-tabulate:s390x 141s Re-Instated python3-numpydoc:s390x 141s Broken satisfy:command-line:s390x Depends on python-scipy-doc:s390x < none | 1.14.1-4ubuntu1 @un uH > 141s Considering python-scipy-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated fonts-open-sans:s390x 141s Re-Instated python-scipy-doc:s390x 141s Broken satisfy:command-line:s390x Depends on python-biom-format-doc:s390x < none | 2.1.16-1build2 @un uH > 141s Considering python-biom-format-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python-biom-format-doc:s390x 141s Broken satisfy:command-line:s390x Depends on python-pandas-doc:s390x < none | 2.2.3+dfsg-8 @un uH > 141s Considering python-pandas-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python-pandas-doc:s390x 141s Broken satisfy:command-line:s390x Depends on python-numpy-doc:s390x < none | 1:2.2.3+ds-1 @un uH > 141s Considering python-numpy-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python-numpy-doc:s390x 141s Broken satisfy:command-line:s390x Depends on python3-pytest:s390x < none | 8.3.4-1 @un uH > 141s Considering python3-pytest:s390x 1 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated python3-iniconfig:s390x 141s Re-Instated python3-pluggy:s390x 141s Re-Instated python3-pytest:s390x 141s Broken satisfy:command-line:s390x Depends on architecture-is-64-bit:s390x < none @un H > 141s Considering architecture-properties:s390x 0 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated architecture-properties:s390x 141s Broken satisfy:command-line:s390x Depends on build-essential:s390x < none | 12.10ubuntu1 @un uH > 141s Considering build-essential:s390x 2 as a solution to satisfy:command-line:s390x 9998 141s Re-Instated libstdc++-14-dev:s390x 141s Re-Instated g++-14-s390x-linux-gnu:s390x 141s Re-Instated g++-14:s390x 141s Re-Instated g++-s390x-linux-gnu:s390x 141s Re-Instated g++:s390x 141s Re-Instated build-essential:s390x 141s Done 141s Some packages could not be installed. This may mean that you have 141s requested an impossible situation or if you are using the unstable 141s distribution that some required packages have not yet been created 141s or been moved out of Incoming. 141s The following information may help to resolve the situation: 141s 141s The following packages have unmet dependencies: 141s satisfy:command-line : Depends: python3-skbio but it is not installable 141s E: Unable to correct problems, you have held broken packages. 141s autopkgtest: DBG: testbed command exited with code 100 141s autopkgtest: DBG: apt-get satisfy failed; status-fd: 141s 141s autopkgtest: DBG: BadPackageError Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 141s autopkgtest: DBG: needs_reset, previously=False, requested by run_tests() line 230 141s autopkgtest [12:55:26]: @@@@@@@@@@@@@@@@@@@@ summary 141s pybuild-autopkgtest FAIL badpkg 141s blame: python-skbio 141s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 141s autopkgtest: DBG: testbed stop 141s autopkgtest: DBG: testbed close, scratch=/tmp/autopkgtest.ynjZkT 141s autopkgtest: DBG: sending command to testbed: close 141s pybuild-autopkgtest FAIL badpkg 141s blame: python-skbio 141s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 157s autopkgtest: DBG: got reply from testbed: ok 157s autopkgtest: DBG: sending command to testbed: quit 157s nova [W] Using flock in prodstack6-s390x 157s flock: timeout while waiting to get lock 157s Creating nova instance adt-plucky-s390x-python-skbio-20250219-125304-juju-7f2275-prod-proposed-migration-environment-15-cc20afe1-df0f-4002-bee7-12189476ac81 from image adt/ubuntu-plucky-s390x-server-20250219.img (UUID 7af5aa59-4155-4177-a560-02c7dd963d23)... 157s nova [W] Timed out waiting for 8ce90308-77fd-4f14-a907-96136721374e to get deleted.