0s autopkgtest [12:50:05]: starting date and time: 2025-02-19 12:50:05+0000 0s autopkgtest [12:50:05]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:50:05]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4tpsl9fv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-pybedtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-28.secgroup --name adt-plucky-s390x-python-pybedtools-20250219-125004-juju-7f2275-prod-proposed-migration-environment-20-4051ddc9-1102-414f-9f33-58c6f91a3413 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 114s autopkgtest [12:51:59]: testbed dpkg architecture: s390x 114s autopkgtest [12:51:59]: testbed apt version: 2.9.30 114s autopkgtest [12:51:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s autopkgtest [12:51:59]: testbed release detected to be: None 115s autopkgtest [12:52:00]: updating testbed package index (apt update) 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 116s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 116s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 116s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 116s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 116s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 116s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 116s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [95.1 kB] 116s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B] 116s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [646 kB] 116s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4900 B] 116s Fetched 1700 kB in 1s (1750 kB/s) 117s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s The following packages were automatically installed and are no longer required: 120s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 120s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 120s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 120s linux-tools-6.11.0-8-generic 120s Use 'sudo apt autoremove' to remove them. 120s The following packages will be upgraded: 120s iproute2 liblsof0 libp11-kit0 lsof 120s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 1791 kB of archives. 120s After this operation, 17.4 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x iproute2 s390x 6.13.0-1ubuntu1 [1174 kB] 121s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit0 s390x 0.25.5-2ubuntu3 [316 kB] 121s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x lsof s390x 4.99.4+dfsg-1 [243 kB] 121s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblsof0 s390x 4.99.4+dfsg-1 [58.5 kB] 121s Preconfiguring packages ... 121s Fetched 1791 kB in 1s (2793 kB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81030 files and directories currently installed.) 121s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_s390x.deb ... 121s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 121s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu3_s390x.deb ... 121s Unpacking libp11-kit0:s390x (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 121s Preparing to unpack .../lsof_4.99.4+dfsg-1_s390x.deb ... 121s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 121s Preparing to unpack .../liblsof0_4.99.4+dfsg-1_s390x.deb ... 121s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 121s Setting up liblsof0 (4.99.4+dfsg-1) ... 121s Setting up iproute2 (6.13.0-1ubuntu1) ... 121s Setting up libp11-kit0:s390x (0.25.5-2ubuntu3) ... 121s Setting up lsof (4.99.4+dfsg-1) ... 121s Processing triggers for man-db (2.13.0-1) ... 122s Processing triggers for libc-bin (2.40-4ubuntu1) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s The following packages will be REMOVED: 122s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 122s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 122s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 122s linux-tools-6.11.0-8-generic* 122s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 122s After this operation, 167 MB disk space will be freed. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81031 files and directories currently installed.) 122s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 122s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 122s Removing libpython3.12t64:s390x (3.12.9-1) ... 122s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 123s Removing libnsl2:s390x (1.3.0-3build3) ... 123s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 123s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 123s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 123s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 123s Processing triggers for libc-bin (2.40-4ubuntu1) ... 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55931 files and directories currently installed.) 124s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 124s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 124s autopkgtest [12:52:09]: upgrading testbed (apt dist-upgrade and autopurge) 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 124s Starting 2 pkgProblemResolver with broken count: 0 124s Done 124s Entering ResolveByKeep 124s 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Starting pkgProblemResolver with broken count: 0 125s Starting 2 pkgProblemResolver with broken count: 0 125s Done 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s autopkgtest [12:52:10]: rebooting testbed after setup commands that affected boot 144s autopkgtest [12:52:29]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 15:05:57 UTC 2025 147s autopkgtest [12:52:32]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pybedtools 150s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4 (dsc) [2623 B] 150s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4 (tar) [12.0 MB] 150s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4 (diff) [33.5 kB] 150s gpgv: Signature made Fri Dec 27 01:57:35 2024 UTC 150s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 150s gpgv: issuer "crusoe@debian.org" 150s gpgv: Can't check signature: No public key 150s dpkg-source: warning: cannot verify inline signature for ./python-pybedtools_0.10.0-4.dsc: no acceptable signature found 150s autopkgtest [12:52:35]: testing package python-pybedtools version 0.10.0-4 151s autopkgtest [12:52:36]: build not needed 155s autopkgtest [12:52:40]: test pybuild-autopkgtest: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Starting pkgProblemResolver with broken count: 1 155s Starting 2 pkgProblemResolver with broken count: 1 155s Investigating (0) satisfy:command-line:s390x < none -> 1 @un puN Ib > 155s Broken satisfy:command-line:s390x Depends on pybedtools-bin:s390x < none | 0.10.0-4 @un uH > 155s Considering pybedtools-bin:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Reinst Failed early because of python3-pybedtools:s390x 155s Broken satisfy:command-line:s390x Depends on python3-pybedtools:s390x < none @un H > 155s Broken satisfy:command-line:s390x Depends on python-pybedtools-doc:s390x < none | 0.10.0-4 @un uH > 155s Considering python-pybedtools-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated libjs-jquery:s390x 155s Re-Instated libjs-underscore:s390x 155s Re-Instated libjs-sphinxdoc:s390x 155s Re-Instated python-pybedtools-doc:s390x 155s Broken satisfy:command-line:s390x Depends on pybuild-plugin-autopkgtest:s390x < none | 6.20250108 @un uH > 155s Considering pybuild-plugin-autopkgtest:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated m4:s390x 155s Re-Instated autoconf:s390x 155s Re-Instated autotools-dev:s390x 155s Re-Instated automake:s390x 155s Re-Instated autopoint:s390x 155s Re-Instated libdebhelper-perl:s390x 155s Re-Instated libisl23:s390x 155s Re-Instated libmpc3:s390x 155s Re-Instated cpp-14-s390x-linux-gnu:s390x 155s Re-Instated cpp-14:s390x 155s Re-Instated cpp-s390x-linux-gnu:s390x 155s Re-Instated cpp:s390x 155s Re-Instated libcc1-0:s390x 155s Re-Instated libgomp1:s390x 155s Re-Instated libitm1:s390x 155s Re-Instated libasan8:s390x 155s Re-Instated libubsan1:s390x 155s Re-Instated libgcc-14-dev:s390x 155s Re-Instated gcc-14-s390x-linux-gnu:s390x 155s Re-Instated gcc-14:s390x 155s Re-Instated gcc-s390x-linux-gnu:s390x 155s Re-Instated gcc:s390x 155s Re-Instated libtool:s390x 155s Re-Instated dh-autoreconf:s390x 155s Re-Instated libarchive-zip-perl:s390x 155s Re-Instated libfile-stripnondeterminism-perl:s390x 155s Re-Instated dh-strip-nondeterminism:s390x 155s Re-Instated debugedit:s390x 155s Re-Instated dwz:s390x 155s Re-Instated gettext:s390x 155s Re-Instated intltool-debian:s390x 155s Re-Instated po-debconf:s390x 155s Re-Instated debhelper:s390x 155s Re-Instated dh-python:s390x 155s Re-Instated pybuild-plugin-autopkgtest:s390x 155s Broken satisfy:command-line:s390x Depends on pybuild-plugin-pyproject:s390x < none | 6.20250108 @un uH > 155s Considering pybuild-plugin-pyproject:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated python3-packaging:s390x 155s Re-Instated python3-pyproject-hooks:s390x 155s Re-Instated python3-toml:s390x 155s Re-Instated python3-wheel:s390x 155s Re-Instated python3-build:s390x 155s Re-Instated python3-installer:s390x 155s Re-Instated pybuild-plugin-pyproject:s390x 155s Broken satisfy:command-line:s390x Depends on bedtools:s390x < none | 2.31.1+dfsg-2 @un uH > 155s Considering bedtools:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated bedtools:s390x 155s Broken satisfy:command-line:s390x Depends on cython3:s390x < none | 3.0.11+dfsg-2ubuntu1 @un uH > 155s Considering cython3:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated cython3:s390x 155s Broken satisfy:command-line:s390x Depends on python3-all-dev:s390x < none | 3.13.1-1~exp2 @un uH > 155s Considering python3-all-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated libexpat1-dev:s390x 155s Re-Instated zlib1g-dev:s390x 155s Re-Instated libpython3.13-dev:s390x 155s Re-Instated libpython3-dev:s390x 155s Re-Instated libpython3.12-minimal:s390x 155s Re-Instated libnsl2:s390x 155s Re-Instated libpython3.12-stdlib:s390x 155s Re-Instated libpython3.12t64:s390x 155s Re-Instated libpython3.12-dev:s390x 155s Re-Instated libpython3-all-dev:s390x 155s Re-Instated python3.12-minimal:s390x 155s Re-Instated python3.12:s390x 155s Re-Instated python3-all:s390x 155s Re-Instated python3.13-dev:s390x 155s Re-Instated python3-dev:s390x 155s Re-Instated python3.12-dev:s390x 155s Re-Instated python3-all-dev:s390x 155s Broken satisfy:command-line:s390x Depends on python3-pysam:s390x < none @un H > 155s Broken satisfy:command-line:s390x Depends on python3-matplotlib:s390x < none | 3.8.3-3ubuntu2 @un uH > 155s Considering python3-matplotlib:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated libjs-jquery-ui:s390x 155s Re-Instated fonts-dejavu-mono:s390x 155s Re-Instated fonts-dejavu-core:s390x 155s Re-Instated fonts-lyx:s390x 155s Re-Instated python-matplotlib-data:s390x 155s Re-Instated python3-dateutil:s390x 155s Re-Instated libfreetype6:s390x 155s Re-Instated libimagequant0:s390x 155s Re-Instated libjpeg-turbo8:s390x 155s Re-Instated libjpeg8:s390x 155s Re-Instated liblcms2-2:s390x 155s Re-Instated libopenjp2-7:s390x 155s Re-Instated libgraphite2-3:s390x 155s Re-Instated libharfbuzz0b:s390x 155s Re-Instated libraqm0:s390x 155s Re-Instated libdeflate0:s390x 155s Re-Instated libjbig0:s390x 155s Re-Instated libsharpyuv0:s390x 155s Re-Instated libwebp7:s390x 155s Re-Instated libtiff6:s390x 155s Re-Instated libwebpdemux2:s390x 155s Re-Instated libwebpmux3:s390x 155s Re-Instated python3-pil:s390x 155s Re-Instated libtcl8.6:s390x 155s Re-Instated fontconfig-config:s390x 155s Re-Instated libfontconfig1:s390x 155s Re-Instated libxrender1:s390x 155s Re-Instated libxft2:s390x 155s Re-Instated x11-common:s390x 155s Re-Instated libxss1:s390x 155s Re-Instated libtk8.6:s390x 155s Re-Instated python3.12-tk:s390x 155s Re-Instated python3.13-tk:s390x 155s Re-Instated tk8.6-blt2.5:s390x 155s Re-Instated blt:s390x 155s Re-Instated python3-tk:s390x 155s Re-Instated python3-pil.imagetk:s390x 155s Re-Instated libblas3:s390x 155s Re-Instated libgfortran5:s390x 155s Re-Instated liblapack3:s390x 155s Re-Instated python3-numpy:s390x 155s Re-Instated python3-contourpy:s390x 155s Re-Instated python3-cycler:s390x 155s Re-Instated python3-brotli:s390x 155s Re-Instated python3-pytz:s390x 155s Re-Instated python3-tz:s390x 155s Re-Instated python3-platformdirs:s390x 155s Re-Instated python3-fs:s390x 155s Re-Instated libxslt1.1:s390x 155s Re-Instated python3-lxml:s390x 155s Re-Instated python3-lz4:s390x 155s Re-Instated python3-decorator:s390x 155s Re-Instated liblbfgsb0:s390x 155s Re-Instated python3-scipy:s390x 155s Re-Instated python3-mpmath:s390x 155s Re-Instated python3-sympy:s390x 155s Re-Instated python3-ufolib2:s390x 155s Re-Instated unicode-data:s390x 155s Re-Instated python3-fonttools:s390x 155s Re-Instated python3-kiwisolver:s390x 155s Re-Instated libqhull-r8.0:s390x 155s Re-Instated python3-matplotlib:s390x 155s Broken satisfy:command-line:s390x Depends on python3-pytest:s390x < none | 8.3.4-1 @un uH > 155s Considering python3-pytest:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated python3-iniconfig:s390x 155s Re-Instated python3-pluggy:s390x 155s Re-Instated python3-pytest:s390x 155s Broken satisfy:command-line:s390x Depends on python3-numpydoc:s390x < none | 1.8.0-1 @un uH > 155s Considering python3-numpydoc:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated python3-defusedxml:s390x 155s Re-Instated libjson-perl:s390x 155s Re-Instated sphinx-common:s390x 155s Re-Instated python3-alabaster:s390x 155s Re-Instated sgml-base:s390x 155s Re-Instated xml-core:s390x 155s Re-Instated docutils-common:s390x 155s Re-Instated python3-roman:s390x 155s Re-Instated python3-docutils:s390x 155s Re-Instated python3-imagesize:s390x 155s Re-Instated python3-snowballstemmer:s390x 155s Re-Instated python3-sphinx:s390x 155s Re-Instated python3-tabulate:s390x 155s Re-Instated python3-numpydoc:s390x 155s Broken satisfy:command-line:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-8 @un uH > 155s Considering python3-pandas:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated python3-pandas-lib:s390x 155s Re-Instated python3-pandas:s390x 155s Broken satisfy:command-line:s390x Depends on python3-psutil:s390x < none | 5.9.8-2build3 @un uH > 155s Considering python3-psutil:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated python3-psutil:s390x 155s Broken satisfy:command-line:s390x Depends on r-base-core:s390x < none | 4.4.2-1build1 @un uH > 155s Considering r-base-core:s390x 1 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated zip:s390x 155s Re-Instated unzip:s390x 155s Re-Instated libpaper2:s390x 155s Re-Instated libpaper-utils:s390x 155s Re-Instated xdg-utils:s390x 155s Re-Instated libpixman-1-0:s390x 155s Re-Instated libxcb-render0:s390x 155s Re-Instated libxcb-shm0:s390x 155s Re-Instated libcairo2:s390x 155s Re-Instated fontconfig:s390x 155s Re-Instated libthai-data:s390x 155s Re-Instated libdatrie1:s390x 155s Re-Instated libthai0:s390x 155s Re-Instated libpango-1.0-0:s390x 155s Re-Instated libpangoft2-1.0-0:s390x 155s Re-Instated libpangocairo-1.0-0:s390x 155s Re-Instated libice6:s390x 155s Re-Instated libsm6:s390x 155s Re-Instated libxt6t64:s390x 155s Re-Instated r-base-core:s390x 155s Broken satisfy:command-line:s390x Depends on build-essential:s390x < none | 12.10ubuntu1 @un uH > 155s Considering build-essential:s390x 2 as a solution to satisfy:command-line:s390x 9998 155s Re-Instated libstdc++-14-dev:s390x 155s Re-Instated g++-14-s390x-linux-gnu:s390x 155s Re-Instated g++-14:s390x 155s Re-Instated g++-s390x-linux-gnu:s390x 155s Re-Instated g++:s390x 155s Re-Instated build-essential:s390x 155s Done 155s Some packages could not be installed. This may mean that you have 155s requested an impossible situation or if you are using the unstable 155s distribution that some required packages have not yet been created 155s or been moved out of Incoming. 155s The following information may help to resolve the situation: 155s 155s The following packages have unmet dependencies: 155s satisfy:command-line : Depends: pybedtools-bin but it is not going to be installed 155s Depends: python3-pybedtools but it is not installable 155s Depends: python3-pysam but it is not installable 155s E: Unable to correct problems, you have held broken packages. 155s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Starting pkgProblemResolver with broken count: 1 156s Starting 2 pkgProblemResolver with broken count: 1 156s Investigating (0) satisfy:command-line:s390x < none -> 1 @un puN Ib > 156s Broken satisfy:command-line:s390x Depends on pybedtools-bin:s390x < none | 0.10.0-4 @un uH > 156s Considering pybedtools-bin:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Reinst Failed early because of python3-pybedtools:s390x 156s Broken satisfy:command-line:s390x Depends on python3-pybedtools:s390x < none @un H > 156s Broken satisfy:command-line:s390x Depends on python-pybedtools-doc:s390x < none | 0.10.0-4 @un uH > 156s Considering python-pybedtools-doc:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated libjs-jquery:s390x 156s Re-Instated libjs-underscore:s390x 156s Re-Instated libjs-sphinxdoc:s390x 156s Re-Instated python-pybedtools-doc:s390x 156s Broken satisfy:command-line:s390x Depends on pybuild-plugin-autopkgtest:s390x < none | 6.20250108 @un uH > 156s Considering pybuild-plugin-autopkgtest:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated m4:s390x 156s Re-Instated autoconf:s390x 156s Re-Instated autotools-dev:s390x 156s Re-Instated automake:s390x 156s Re-Instated autopoint:s390x 156s Re-Instated libdebhelper-perl:s390x 156s Re-Instated gcc-14-base:s390x 156s Re-Instated libisl23:s390x 156s Re-Instated libmpc3:s390x 156s Re-Instated cpp-14-s390x-linux-gnu:s390x 156s Re-Instated cpp-14:s390x 156s Re-Instated cpp-s390x-linux-gnu:s390x 156s Re-Instated cpp:s390x 156s Re-Instated libcc1-0:s390x 156s Re-Instated libgomp1:s390x 156s Re-Instated libitm1:s390x 156s Re-Instated libasan8:s390x 156s Re-Instated libubsan1:s390x 156s Re-Instated libgcc-14-dev:s390x 156s Re-Instated gcc-14-s390x-linux-gnu:s390x 156s Re-Instated gcc-14:s390x 156s Re-Instated gcc-s390x-linux-gnu:s390x 156s Re-Instated gcc:s390x 156s Re-Instated libtool:s390x 156s Re-Instated dh-autoreconf:s390x 156s Re-Instated libarchive-zip-perl:s390x 156s Re-Instated libfile-stripnondeterminism-perl:s390x 156s Re-Instated dh-strip-nondeterminism:s390x 156s Re-Instated debugedit:s390x 156s Re-Instated dwz:s390x 156s Re-Instated gettext:s390x 156s Re-Instated intltool-debian:s390x 156s Re-Instated po-debconf:s390x 156s Re-Instated debhelper:s390x 156s Re-Instated dh-python:s390x 156s Re-Instated pybuild-plugin-autopkgtest:s390x 156s Broken satisfy:command-line:s390x Depends on pybuild-plugin-pyproject:s390x < none | 6.20250108 @un uH > 156s Considering pybuild-plugin-pyproject:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated python3-packaging:s390x 156s Re-Instated python3-pyproject-hooks:s390x 156s Re-Instated python3-toml:s390x 156s Re-Instated python3-wheel:s390x 156s Re-Instated python3-build:s390x 156s Re-Instated python3-installer:s390x 156s Re-Instated pybuild-plugin-pyproject:s390x 156s Broken satisfy:command-line:s390x Depends on bedtools:s390x < none | 2.31.1+dfsg-2 @un uH > 156s Considering bedtools:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated bedtools:s390x 156s Broken satisfy:command-line:s390x Depends on cython3:s390x < none | 3.0.11+dfsg-2ubuntu1 @un uH > 156s Considering cython3:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated cython3:s390x 156s Broken satisfy:command-line:s390x Depends on python3-all-dev:s390x < none | 3.13.1-1~exp2 @un uH > 156s Considering python3-all-dev:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated libexpat1-dev:s390x 156s Re-Instated zlib1g-dev:s390x 156s Re-Instated libpython3.13-dev:s390x 156s Re-Instated libpython3-dev:s390x 156s Re-Instated libpython3.12-minimal:s390x 156s Re-Instated libnsl2:s390x 156s Re-Instated libpython3.12-stdlib:s390x 156s Re-Instated libpython3.12t64:s390x 156s Re-Instated libpython3.12-dev:s390x 156s Re-Instated libpython3-all-dev:s390x 156s Re-Instated python3.12-minimal:s390x 156s Re-Instated python3.12:s390x 156s Re-Instated python3-all:s390x 156s Re-Instated python3.13-dev:s390x 156s Re-Instated python3-dev:s390x 156s Re-Instated python3.12-dev:s390x 156s Re-Instated python3-all-dev:s390x 156s Broken satisfy:command-line:s390x Depends on python3-pysam:s390x < none @un H > 156s Broken satisfy:command-line:s390x Depends on python3-matplotlib:s390x < none | 3.8.3-3ubuntu2 @un uH > 156s Considering python3-matplotlib:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated libjs-jquery-ui:s390x 156s Re-Instated fonts-dejavu-mono:s390x 156s Re-Instated fonts-dejavu-core:s390x 156s Re-Instated fonts-lyx:s390x 156s Re-Instated python-matplotlib-data:s390x 156s Re-Instated python3-dateutil:s390x 156s Re-Instated libfreetype6:s390x 156s Re-Instated libimagequant0:s390x 156s Re-Instated libjpeg-turbo8:s390x 156s Re-Instated libjpeg8:s390x 156s Re-Instated liblcms2-2:s390x 156s Re-Instated libopenjp2-7:s390x 156s Re-Instated libgraphite2-3:s390x 156s Re-Instated libharfbuzz0b:s390x 156s Re-Instated libraqm0:s390x 156s Re-Instated libdeflate0:s390x 156s Re-Instated libjbig0:s390x 156s Re-Instated libsharpyuv0:s390x 156s Re-Instated libwebp7:s390x 156s Re-Instated libtiff6:s390x 156s Re-Instated libwebpdemux2:s390x 156s Re-Instated libwebpmux3:s390x 156s Re-Instated python3-pil:s390x 156s Re-Instated libtcl8.6:s390x 156s Re-Instated fontconfig-config:s390x 156s Re-Instated libfontconfig1:s390x 156s Re-Instated libxrender1:s390x 156s Re-Instated libxft2:s390x 156s Re-Instated x11-common:s390x 156s Re-Instated libxss1:s390x 156s Re-Instated libtk8.6:s390x 156s Re-Instated python3.12-tk:s390x 156s Re-Instated python3.13-tk:s390x 156s Re-Instated tk8.6-blt2.5:s390x 156s Re-Instated blt:s390x 156s Re-Instated python3-tk:s390x 156s Re-Instated python3-pil.imagetk:s390x 156s Re-Instated python3-numpy-dev:s390x 156s Re-Instated libblas3:s390x 156s Re-Instated libgfortran5:s390x 156s Re-Instated liblapack3:s390x 156s Re-Instated python3-numpy:s390x 156s Re-Instated python3-contourpy:s390x 156s Re-Instated python3-cycler:s390x 156s Re-Instated python3-brotli:s390x 156s Re-Instated python3-pytz:s390x 156s Re-Instated python3-tz:s390x 156s Re-Instated python3-platformdirs:s390x 156s Re-Instated python3-fs:s390x 156s Re-Instated libxslt1.1:s390x 156s Re-Instated python3-lxml:s390x 156s Re-Instated python3-lz4:s390x 156s Re-Instated python3-decorator:s390x 156s Re-Instated liblbfgsb0:s390x 156s Re-Instated python3-scipy:s390x 156s Re-Instated python3-mpmath:s390x 156s Re-Instated python3-sympy:s390x 156s Re-Instated python3-ufolib2:s390x 156s Re-Instated unicode-data:s390x 156s Re-Instated python3-fonttools:s390x 156s Re-Instated python3-kiwisolver:s390x 156s Re-Instated libqhull-r8.0:s390x 156s Re-Instated python3-matplotlib:s390x 156s Broken satisfy:command-line:s390x Depends on python3-pytest:s390x < none | 8.3.4-1 @un uH > 156s Considering python3-pytest:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated python3-iniconfig:s390x 156s Re-Instated python3-pluggy:s390x 156s Re-Instated python3-pytest:s390x 156s Broken satisfy:command-line:s390x Depends on python3-numpydoc:s390x < none | 1.8.0-1 @un uH > 156s Considering python3-numpydoc:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated python3-defusedxml:s390x 156s Re-Instated libjson-perl:s390x 156s Re-Instated sphinx-common:s390x 156s Re-Instated python3-alabaster:s390x 156s Re-Instated sgml-base:s390x 156s Re-Instated xml-core:s390x 156s Re-Instated docutils-common:s390x 156s Re-Instated python3-roman:s390x 156s Re-Instated python3-docutils:s390x 156s Re-Instated python3-imagesize:s390x 156s Re-Instated python3-snowballstemmer:s390x 156s Re-Instated python3-sphinx:s390x 156s Re-Instated python3-tabulate:s390x 156s Re-Instated python3-numpydoc:s390x 156s Broken satisfy:command-line:s390x Depends on python3-pandas:s390x < none | 2.2.3+dfsg-8 @un uH > 156s Considering python3-pandas:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated python3-pandas-lib:s390x 156s Re-Instated python3-pandas:s390x 156s Broken satisfy:command-line:s390x Depends on python3-psutil:s390x < none | 5.9.8-2build3 @un uH > 156s Considering python3-psutil:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated python3-psutil:s390x 156s Broken satisfy:command-line:s390x Depends on r-base-core:s390x < none | 4.4.2-1build1 @un uH > 156s Considering r-base-core:s390x 1 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated zip:s390x 156s Re-Instated unzip:s390x 156s Re-Instated libpaper2:s390x 156s Re-Instated libpaper-utils:s390x 156s Re-Instated xdg-utils:s390x 156s Re-Instated libpixman-1-0:s390x 156s Re-Instated libxcb-render0:s390x 156s Re-Instated libxcb-shm0:s390x 156s Re-Instated libcairo2:s390x 156s Re-Instated fontconfig:s390x 156s Re-Instated libthai-data:s390x 156s Re-Instated libdatrie1:s390x 156s Re-Instated libthai0:s390x 156s Re-Instated libpango-1.0-0:s390x 156s Re-Instated libpangoft2-1.0-0:s390x 156s Re-Instated libpangocairo-1.0-0:s390x 156s Re-Instated libice6:s390x 156s Re-Instated libsm6:s390x 156s Re-Instated libxt6t64:s390x 156s Re-Instated r-base-core:s390x 156s Broken satisfy:command-line:s390x Depends on build-essential:s390x < none | 12.10ubuntu1 @un uH > 156s Considering build-essential:s390x 2 as a solution to satisfy:command-line:s390x 9998 156s Re-Instated libstdc++-14-dev:s390x 156s Re-Instated g++-14-s390x-linux-gnu:s390x 156s Re-Instated g++-14:s390x 156s Re-Instated g++-s390x-linux-gnu:s390x 156s Re-Instated g++:s390x 156s Re-Instated build-essential:s390x 156s Done 156s Some packages could not be installed. This may mean that you have 156s requested an impossible situation or if you are using the unstable 156s distribution that some required packages have not yet been created 156s or been moved out of Incoming. 156s The following information may help to resolve the situation: 156s 156s The following packages have unmet dependencies: 156s satisfy:command-line : Depends: pybedtools-bin but it is not going to be installed 156s Depends: python3-pybedtools but it is not installable 156s Depends: python3-pysam but it is not installable 156s E: Unable to correct problems, you have held broken packages. 156s pybuild-autopkgtest FAIL badpkg 156s blame: python-pybedtools 156s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 156s autopkgtest [12:52:41]: @@@@@@@@@@@@@@@@@@@@ summary 156s pybuild-autopkgtest FAIL badpkg 156s blame: python-pybedtools 156s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 174s nova [W] Using flock in prodstack6-s390x 174s Creating nova instance adt-plucky-s390x-python-pybedtools-20250219-125004-juju-7f2275-prod-proposed-migration-environment-20-4051ddc9-1102-414f-9f33-58c6f91a3413 from image adt/ubuntu-plucky-s390x-server-20250219.img (UUID 7af5aa59-4155-4177-a560-02c7dd963d23)... 174s nova [W] Timed out waiting for 038afe41-3e06-4568-9716-43d545491a7d to get deleted.