0s autopkgtest [20:13:28]: starting date and time: 2024-11-15 20:13:28+0000 0s autopkgtest [20:13:28]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:13:28]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5rb896hv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-5.secgroup --name adt-plucky-s390x-python-pot-20241115-201328-juju-7f2275-prod-proposed-migration-environment-15-7df4fa3e-59a0-4e44-b0c5-4c0a5d192e7a --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [20:15:20]: testbed dpkg architecture: s390x 112s autopkgtest [20:15:20]: testbed apt version: 2.9.8 112s autopkgtest [20:15:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 113s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 113s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [92.2 kB] 113s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1043 kB] 114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [150 kB] 114s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [747 kB] 114s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4940 B] 114s Fetched 2133 kB in 1s (2326 kB/s) 114s Reading package lists... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Calculating upgrade... 116s The following NEW packages will be installed: 116s libassuan9 116s The following packages will be upgraded: 116s libgpgme11t64 libseccomp2 python3-cffi-backend python3-markupsafe 117s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 352 kB of archives. 117s After this operation, 352 kB of additional disk space will be used. 117s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libseccomp2 s390x 2.5.5-1ubuntu5 [52.1 kB] 117s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cffi-backend s390x 1.17.1-2build1 [91.3 kB] 117s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libassuan9 s390x 3.0.1-2 [41.3 kB] 117s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.24.0-2ubuntu1 [154 kB] 117s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-markupsafe s390x 2.1.5-1build3 [12.9 kB] 117s Fetched 352 kB in 0s (760 kB/s) 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 117s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_s390x.deb ... 117s Unpacking libseccomp2:s390x (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 117s Setting up libseccomp2:s390x (2.5.5-1ubuntu5) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 117s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_s390x.deb ... 117s Unpacking python3-cffi-backend:s390x (1.17.1-2build1) over (1.17.1-2) ... 117s Selecting previously unselected package libassuan9:s390x. 117s Preparing to unpack .../libassuan9_3.0.1-2_s390x.deb ... 117s Unpacking libassuan9:s390x (3.0.1-2) ... 117s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_s390x.deb ... 117s Unpacking libgpgme11t64:s390x (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 117s Preparing to unpack .../python3-markupsafe_2.1.5-1build3_s390x.deb ... 117s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ... 117s Setting up python3-markupsafe (2.1.5-1build3) ... 118s Setting up libassuan9:s390x (3.0.1-2) ... 118s Setting up libgpgme11t64:s390x (1.24.0-2ubuntu1) ... 118s Setting up python3-cffi-backend:s390x (1.17.1-2build1) ... 118s Processing triggers for libc-bin (2.40-1ubuntu3) ... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 118s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 119s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 119s Reading package lists... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Calculating upgrade... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [20:15:30]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 123s autopkgtest [20:15:31]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 124s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (dsc) [2114 B] 124s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (tar) [775 kB] 124s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (diff) [5972 B] 125s gpgv: Signature made Fri Jul 26 13:27:39 2024 UTC 125s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 125s gpgv: issuer "gspr@nonempty.org" 125s gpgv: Can't check signature: No public key 125s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.4+dfsg-1.dsc: no acceptable signature found 125s autopkgtest [20:15:33]: testing package python-pot version 0.9.4+dfsg-1 125s autopkgtest [20:15:33]: build not needed 125s autopkgtest [20:15:33]: test upstream.sh: preparing testbed 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Starting pkgProblemResolver with broken count: 0 131s Starting 2 pkgProblemResolver with broken count: 0 131s Done 131s The following additional packages will be installed: 131s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 131s python3-decorator python3-iniconfig python3-joblib python3-numpy 131s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 131s python3-sklearn python3-sklearn-lib python3-threadpoolctl 131s Suggested packages: 131s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python-scipy-doc 131s python3-dap python-sklearn-doc ipython3 131s Recommended packages: 131s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 131s python3-matplotlib 131s The following NEW packages will be installed: 131s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 131s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 131s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 131s python3-sklearn python3-sklearn-lib python3-threadpoolctl 131s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 35.6 MB/35.6 MB of archives. 131s After this operation, 162 MB of additional disk space will be used. 131s Get:1 /tmp/autopkgtest.soLFxG/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [728 B] 131s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 131s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 132s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 132s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 132s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 132s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.12.6-0ubuntu1 [890 B] 132s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 132s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 132s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-joblib all 1.3.2-5 [206 kB] 132s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 132s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB] 132s Get:13 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 132s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB] 134s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pot s390x 0.9.4+dfsg-1 [234 kB] 134s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 134s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 134s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-6build1 [6979 kB] 134s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 134s Fetched 35.6 MB in 3s (12.3 MB/s) 134s Selecting previously unselected package libblas3:s390x. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55524 files and directories currently installed.) 134s Preparing to unpack .../00-libblas3_3.12.0-3build2_s390x.deb ... 134s Unpacking libblas3:s390x (3.12.0-3build2) ... 134s Selecting previously unselected package libgfortran5:s390x. 134s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 134s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package libgomp1:s390x. 134s Preparing to unpack .../02-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 134s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package liblapack3:s390x. 134s Preparing to unpack .../03-liblapack3_3.12.0-3build2_s390x.deb ... 134s Unpacking liblapack3:s390x (3.12.0-3build2) ... 134s Selecting previously unselected package liblbfgsb0:s390x. 134s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 134s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 134s Selecting previously unselected package python3-all. 134s Preparing to unpack .../05-python3-all_3.12.6-0ubuntu1_s390x.deb ... 134s Unpacking python3-all (3.12.6-0ubuntu1) ... 134s Selecting previously unselected package python3-decorator. 134s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 134s Unpacking python3-decorator (5.1.1-5) ... 134s Selecting previously unselected package python3-iniconfig. 134s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 134s Unpacking python3-iniconfig (1.1.1-2) ... 134s Selecting previously unselected package python3-joblib. 134s Preparing to unpack .../08-python3-joblib_1.3.2-5_all.deb ... 134s Unpacking python3-joblib (1.3.2-5) ... 134s Selecting previously unselected package python3-numpy. 134s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 134s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 134s Selecting previously unselected package python3-packaging. 134s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 134s Unpacking python3-packaging (24.1-1) ... 134s Selecting previously unselected package python3-pluggy. 134s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 134s Unpacking python3-pluggy (1.5.0-1) ... 134s Selecting previously unselected package python3-scipy. 134s Preparing to unpack .../12-python3-scipy_1.13.1-5_s390x.deb ... 134s Unpacking python3-scipy (1.13.1-5) ... 135s Selecting previously unselected package python3-pot. 135s Preparing to unpack .../13-python3-pot_0.9.4+dfsg-1_s390x.deb ... 135s Unpacking python3-pot (0.9.4+dfsg-1) ... 135s Selecting previously unselected package python3-pytest. 135s Preparing to unpack .../14-python3-pytest_8.3.3-1_all.deb ... 135s Unpacking python3-pytest (8.3.3-1) ... 135s Selecting previously unselected package python3-threadpoolctl. 135s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 135s Unpacking python3-threadpoolctl (3.1.0-1) ... 135s Selecting previously unselected package python3-sklearn-lib:s390x. 135s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-6build1_s390x.deb ... 135s Unpacking python3-sklearn-lib:s390x (1.4.2+dfsg-6build1) ... 135s Selecting previously unselected package python3-sklearn. 135s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 135s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 135s Selecting previously unselected package autopkgtest-satdep. 135s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 135s Unpacking autopkgtest-satdep (0) ... 135s Setting up python3-iniconfig (1.1.1-2) ... 135s Setting up python3-joblib (1.3.2-5) ... 135s Setting up python3-threadpoolctl (3.1.0-1) ... 135s Setting up python3-all (3.12.6-0ubuntu1) ... 135s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 135s Setting up python3-decorator (5.1.1-5) ... 136s Setting up libblas3:s390x (3.12.0-3build2) ... 136s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 136s Setting up python3-packaging (24.1-1) ... 136s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 136s Setting up python3-pluggy (1.5.0-1) ... 136s Setting up liblapack3:s390x (3.12.0-3build2) ... 136s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 136s Setting up python3-pytest (8.3.3-1) ... 136s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 138s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 138s Setting up python3-scipy (1.13.1-5) ... 142s Setting up python3-pot (0.9.4+dfsg-1) ... 142s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-6build1) ... 142s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 145s Setting up autopkgtest-satdep (0) ... 145s Processing triggers for man-db (2.13.0-1) ... 145s Processing triggers for libc-bin (2.40-1ubuntu3) ... 147s (Reading database ... 59205 files and directories currently installed.) 147s Removing autopkgtest-satdep (0) ... 148s autopkgtest [20:15:56]: test upstream.sh: [----------------------- 148s Running tests with Python 3.12. 150s ============================= test session starts ============================== 150s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 150s rootdir: /tmp/autopkgtest.soLFxG/autopkgtest_tmp 150s plugins: typeguard-4.4.1 150s collected 615 items 150s 155s test/gromov/test_bregman.py ..x..x............ [ 2%] 155s test/gromov/test_dictionary.py .... [ 3%] 155s test/gromov/test_estimators.py .. [ 3%] 155s test/gromov/test_gw.py ....s....x....... [ 6%] 156s test/gromov/test_lowrank.py .......... [ 8%] 156s test/gromov/test_quantized.py .... [ 8%] 158s test/gromov/test_semirelaxed.py .....x....... [ 11%] 158s test/test_1d_solver.py ...s..s...... [ 13%] 158s test/test_backend.py .......... [ 14%] 162s test/test_bregman.py ......................................sss.......... [ 23%] 168s .....................................ss....ss..ss..s....... [ 32%] 169s test/test_coot.py ......... [ 34%] 170s test/test_da.py .....................s... [ 38%] 170s test/test_dmmot.py .. [ 38%] 170s test/test_dr.py ssssss [ 39%] 171s test/test_factored.py .. [ 39%] 177s test/test_gaussian.py .................. [ 42%] 177s test/test_gnn.py ssss [ 43%] 179s test/test_lowrank.py ........... [ 45%] 179s test/test_mapping.py sss. [ 45%] 180s test/test_optim.py ...... [ 46%] 181s test/test_ot.py ....s..........s.. [ 49%] 182s test/test_partial.py ...... [ 50%] 182s test/test_plot.py ss [ 51%] 183s test/test_regpath.py .. [ 51%] 183s test/test_sliced.py ...........s..s............. [ 55%] 183s test/test_smooth.py ... [ 56%] 186s test/test_solvers.py .s................................................. [ 64%] 187s .........................ssssssss........ssssssss....................... [ 76%] 190s .ssssssss........ssssssss...ss............. [ 83%] 192s test/test_stochastic.py ......... [ 84%] 195s test/test_unbalanced.py ................................................ [ 92%] 205s ................ [ 95%] 205s test/test_utils.py ........................... [ 99%] 205s test/test_weak.py .. [100%] 205s 205s =============================== warnings summary =============================== 205s test/gromov/test_bregman.py: 12 warnings 205s test/gromov/test_estimators.py: 1 warning 205s test/test_bregman.py: 6 warnings 205s test/test_coot.py: 1 warning 205s test/test_da.py: 4 warnings 205s test/test_optim.py: 1 warning 205s test/test_partial.py: 1 warning 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 205s warnings.warn("Sinkhorn did not converge. You might want to " 205s 205s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:507: RuntimeWarning: divide by zero encountered in divide 205s column_scaling = q / nx.sum(T, 0) 205s 205s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:508: RuntimeWarning: invalid value encountered in multiply 205s T = nx.reshape(column_scaling, (1, -1)) * T 205s 205s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1357: RuntimeWarning: divide by zero encountered in divide 205s row_scaling = p / nx.sum(T, 1) 205s 205s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1358: RuntimeWarning: invalid value encountered in multiply 205s T = nx.reshape(row_scaling, (-1, 1)) * T 205s 205s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 205s /usr/lib/python3/dist-packages/ot/backend.py:1153: RuntimeWarning: divide by zero encountered in log 205s return np.log(a) 205s 205s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 205s v = b / KtransposeU 205s 205s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 205s v = b / KtransposeU 205s 205s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 205s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 205s warnings.warn('Warning: numerical errors at iteration %d' % ii) 205s 205s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1050: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 205s warnings.warn("Solver failed to produce a transport plan. You might " 205s 205s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 205s warnings.warn("Solver failed to produce a transport plan. You might " 205s 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 205s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 205s 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 205s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 205s 205s test/gromov/test_estimators.py: 400 warnings 205s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 205s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 205s 205s test/gromov/test_estimators.py: 400 warnings 205s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 205s index[1] = generator.choice( 205s 205s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 205s /tmp/autopkgtest.soLFxG/autopkgtest_tmp/test/gromov/test_gw.py:144: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 205s G = ot.gromov.gromov_wasserstein( 205s 205s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 205s /tmp/autopkgtest.soLFxG/autopkgtest_tmp/test/gromov/test_gw.py:147: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 205s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 205s 205s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 205s /tmp/autopkgtest.soLFxG/autopkgtest_tmp/test/gromov/test_gw.py:641: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 205s G, log = ot.gromov.fused_gromov_wasserstein( 205s 205s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 205s /tmp/autopkgtest.soLFxG/autopkgtest_tmp/test/gromov/test_gw.py:644: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 205s Gb, logb = ot.gromov.fused_gromov_wasserstein( 205s 205s test/gromov/test_lowrank.py::test_lowrank_gromov_wasserstein_samples 205s test/gromov/test_lowrank.py::test_lowrank_wasserstein_samples_gamma_init[theory] 205s /usr/lib/python3/dist-packages/ot/gromov/_lowrank.py:270: UserWarning: Low Rank GW did not converge. You might want to increase the number of iterations `numItermax` 205s warnings.warn( 205s 205s test/gromov/test_quantized.py::test_quantized_gw[numpy] 205s test/gromov/test_quantized.py::test_quantized_gw[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:699: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 205s part1 = get_graph_partition(C1_aux, npart1, part_method, F1, alpha, random_state, nx) 205s 205s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 205s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 205s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 205s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 205s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 205s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:1097: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 205s part1, rep_indices1 = get_partition_and_representants_samples( 205s 205s test/test_bregman.py::test_nan_warning[sinkhorn] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: divide by zero encountered in divide 205s K = nx.exp(M / (-reg)) 205s 205s test/test_bregman.py::test_nan_warning[sinkhorn] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: invalid value encountered in divide 205s K = nx.exp(M / (-reg)) 205s 205s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: divide by zero encountered in divide 205s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 205s 205s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: invalid value encountered in divide 205s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 205s 205s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 205s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: divide by zero encountered in divide 205s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 205s 205s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 205s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: invalid value encountered in divide 205s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 205s 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 205s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 205s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 205s test/test_bregman.py::test_sinkhorn_warmstart 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 205s warnings.warn("Sinkhorn did not converge. You might want to " 205s 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 205s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 205s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 205s warnings.warn("Sinkhorn did not converge. You might want to " 205s 205s test/test_bregman.py::test_sinkhorn_empty 205s test/test_bregman.py::test_sinkhorn_variants[numpy] 205s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 205s test/test_bregman.py::test_sinkhorn_variants_log 205s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 205s warnings.warn("Sinkhorn did not converge. You might want to " 205s 205s test/test_coot.py::test_coot[numpy-False] 205s test/test_coot.py::test_coot[numpy-True] 205s test/test_coot.py::test_coot[numpy-1] 205s test/test_coot.py::test_coot[numpy-0] 205s test/test_coot.py::test_coot_warmstart[numpy] 205s test/test_coot.py::test_coot_log[numpy] 205s /usr/lib/python3/dist-packages/ot/lp/__init__.py:361: UserWarning: numItermax reached before optimality. Try to increase numItermax. 205s result_code_string = check_result(result_code) 205s 205s test/test_da.py::test_sinkhorn_transport_class[numpy] 205s /usr/lib/python3/dist-packages/ot/da.py:1159: UserWarning: The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous' 205s warnings.warn("The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous'") 205s 205s test/test_regpath.py: 232 warnings 205s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 205s M[-1, -1] = 1 / s 205s 205s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 205s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: divide by zero encountered in divide 205s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 205s 205s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 205s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: invalid value encountered in divide 205s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 205s 205s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 205s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 205s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 205s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 205s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 205s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 205s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 205s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 205s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 205s 205s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 205s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 205s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 205s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 205s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 205s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 205s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 205s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 205s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 205s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 205s 205s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 205s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 205s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 205s v = (b / Ktu) ** fi_2 205s 205s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 205s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 205s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 205s warnings.warn('Numerical errors at iteration %s' % i) 205s 205s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 205s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 205s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 205s 205s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 205s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 205s warnings.warn("The div parameter should be either equal to 'kl' or \ 205s 205s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 205s ========== 543 passed, 68 skipped, 4 xfailed, 1144 warnings in 56.37s ========== 205s ********** 206s autopkgtest [20:16:54]: test upstream.sh: -----------------------] 206s upstream.sh PASS 206s autopkgtest [20:16:54]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 206s autopkgtest [20:16:54]: @@@@@@@@@@@@@@@@@@@@ summary 206s upstream.sh PASS 218s nova [W] Using flock in prodstack6-s390x 218s flock: timeout while waiting to get lock 218s Creating nova instance adt-plucky-s390x-python-pot-20241115-201328-juju-7f2275-prod-proposed-migration-environment-15-7df4fa3e-59a0-4e44-b0c5-4c0a5d192e7a from image adt/ubuntu-plucky-s390x-server-20241115.img (UUID c94000c6-8e8d-4693-8d37-fa9d34cd2414)...