0s autopkgtest [16:06:37]: starting date and time: 2025-01-03 16:06:37+0000 0s autopkgtest [16:06:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:06:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.09xc_hsh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade python-pbcommand --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-16.secgroup --name adt-plucky-s390x-python-pbcommand-20250103-160637-juju-7f2275-prod-proposed-migration-environment-2-975cf745-8429-4a1d-8bd8-966fdb7da382 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 90s autopkgtest [16:08:07]: testbed dpkg architecture: s390x 90s autopkgtest [16:08:07]: testbed apt version: 2.9.18 90s autopkgtest [16:08:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 91s autopkgtest [16:08:08]: testbed release detected to be: None 91s autopkgtest [16:08:08]: updating testbed package index (apt update) 92s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 92s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 92s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 92s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 92s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.5 kB] 92s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [782 kB] 92s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 92s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 92s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [81.4 kB] 92s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [756 B] 92s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [578 kB] 92s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4080 B] 92s Fetched 1615 kB in 1s (1716 kB/s) 93s Reading package lists... 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 94s autopkgtest [16:08:11]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 95s Entering ResolveByKeep 96s 96s The following packages were automatically installed and are no longer required: 96s python3.12 python3.12-minimal 96s Use 'sudo apt autoremove' to remove them. 96s The following NEW packages will be installed: 96s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 96s The following packages will be upgraded: 96s libpython3-stdlib python3 python3-minimal 96s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 96s Need to get 6108 kB of archives. 96s After this operation, 22.7 MB of additional disk space will be used. 96s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.1-2 [880 kB] 96s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.1-2 [2364 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.13.1-1~exp2 [27.6 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.13.1-1~exp2 [23.9 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.1-2 [2074 kB] 97s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.1-2 [729 kB] 97s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.13.1-1~exp2 [10.2 kB] 97s Fetched 6108 kB in 1s (7179 kB/s) 97s Selecting previously unselected package libpython3.13-minimal:s390x. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55616 files and directories currently installed.) 97s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_s390x.deb ... 97s Unpacking libpython3.13-minimal:s390x (3.13.1-2) ... 97s Selecting previously unselected package python3.13-minimal. 97s Preparing to unpack .../python3.13-minimal_3.13.1-2_s390x.deb ... 97s Unpacking python3.13-minimal (3.13.1-2) ... 97s Setting up libpython3.13-minimal:s390x (3.13.1-2) ... 97s Setting up python3.13-minimal (3.13.1-2) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55936 files and directories currently installed.) 98s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_s390x.deb ... 98s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 98s Setting up python3-minimal (3.13.1-1~exp2) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55936 files and directories currently installed.) 98s Preparing to unpack .../python3_3.13.1-1~exp2_s390x.deb ... 98s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 98s Selecting previously unselected package libpython3.13-stdlib:s390x. 98s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_s390x.deb ... 98s Unpacking libpython3.13-stdlib:s390x (3.13.1-2) ... 98s Selecting previously unselected package python3.13. 98s Preparing to unpack .../python3.13_3.13.1-2_s390x.deb ... 98s Unpacking python3.13 (3.13.1-2) ... 98s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_s390x.deb ... 98s Unpacking libpython3-stdlib:s390x (3.13.1-1~exp2) over (3.12.8-1) ... 98s Setting up libpython3.13-stdlib:s390x (3.13.1-2) ... 98s Setting up libpython3-stdlib:s390x (3.13.1-1~exp2) ... 98s Setting up python3.13 (3.13.1-2) ... 99s Setting up python3 (3.13.1-1~exp2) ... 99s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 99s for fn in glob1(directory, "%s.*" % fname): 99s Processing triggers for man-db (2.13.0-1) ... 100s Processing triggers for systemd (257-2ubuntu1) ... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Starting pkgProblemResolver with broken count: 0 101s Starting 2 pkgProblemResolver with broken count: 0 101s Done 101s The following packages will be REMOVED: 101s python3.12* python3.12-minimal* 101s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 101s After this operation, 9190 kB disk space will be freed. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56353 files and directories currently installed.) 101s Removing python3.12 (3.12.8-3) ... 101s Removing python3.12-minimal (3.12.8-3) ... 102s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 102s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 102s Processing triggers for man-db (2.13.0-1) ... 102s Processing triggers for systemd (257-2ubuntu1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56325 files and directories currently installed.) 102s Purging configuration files for python3.12-minimal (3.12.8-3) ... 105s autopkgtest [16:08:22]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 106s autopkgtest [16:08:23]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pbcommand 107s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pbcommand 2.1.1+git20220616.3f2e6c2-3 (dsc) [2522 B] 107s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pbcommand 2.1.1+git20220616.3f2e6c2-3 (tar) [105 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pbcommand 2.1.1+git20220616.3f2e6c2-3 (diff) [5864 B] 107s gpgv: Signature made Fri Mar 22 17:59:55 2024 UTC 107s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 107s gpgv: Can't check signature: No public key 107s dpkg-source: warning: cannot verify inline signature for ./python-pbcommand_2.1.1+git20220616.3f2e6c2-3.dsc: no acceptable signature found 108s autopkgtest [16:08:25]: testing package python-pbcommand version 2.1.1+git20220616.3f2e6c2-3 108s autopkgtest [16:08:25]: build not needed 109s autopkgtest [16:08:26]: test run-unit-test: preparing testbed 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Starting pkgProblemResolver with broken count: 1 109s Starting 2 pkgProblemResolver with broken count: 1 109s Investigating (0) python3-pbcore:s390x < none -> 2.1.2+dfsg-10 @un puN Ib > 109s Broken python3-pbcore:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4build1 @un uH > 109s Considering python3-biopython:s390x 1 as a solution to python3-pbcore:s390x 1 109s Re-Instated libfreetype6:s390x 109s Re-Instated libgomp1:s390x 109s Re-Instated libimagequant0:s390x 109s Re-Instated libjpeg-turbo8:s390x 109s Re-Instated libjpeg8:s390x 109s Re-Instated liblcms2-2:s390x 109s Re-Instated libopenjp2-7:s390x 109s Re-Instated libgraphite2-3:s390x 109s Re-Instated libharfbuzz0b:s390x 109s Re-Instated libraqm0:s390x 109s Re-Instated libdeflate0:s390x 109s Re-Instated libjbig0:s390x 109s Re-Instated libsharpyuv0:s390x 109s Re-Instated libwebp7:s390x 109s Re-Instated libtiff6:s390x 109s Re-Instated libwebpdemux2:s390x 109s Re-Instated libwebpmux3:s390x 109s Re-Instated python3-pil:s390x 109s Re-Instated fonts-dejavu-mono:s390x 109s Re-Instated fonts-dejavu-core:s390x 109s Re-Instated fontconfig-config:s390x 109s Re-Instated libfontconfig1:s390x 109s Re-Instated libpixman-1-0:s390x 109s Re-Instated libxcb-render0:s390x 109s Re-Instated libxcb-shm0:s390x 109s Re-Instated libxrender1:s390x 109s Re-Instated libcairo2:s390x 109s Re-Instated python3-cairo:s390x 109s Re-Instated python3-freetype:s390x 109s Re-Instated python3-rlpycairo:s390x 109s Re-Instated libfontenc1:s390x 109s Re-Instated x11-common:s390x 109s Re-Instated xfonts-encodings:s390x 109s Re-Instated xfonts-utils:s390x 109s Re-Instated fonts-urw-base35:s390x 109s Re-Instated python3-reportlab:s390x 109s Re-Instated sgml-base:s390x 109s Re-Instated xml-core:s390x 109s Re-Instated w3c-sgml-lib:s390x 109s Re-Instated python3-biopython:s390x 109s Broken python3-pbcore:s390x Depends on python3-pysam:s390x < none @un H > 109s Done 109s Some packages could not be installed. This may mean that you have 109s requested an impossible situation or if you are using the unstable 109s distribution that some required packages have not yet been created 109s or been moved out of Incoming. 109s The following information may help to resolve the situation: 109s 109s The following packages have unmet dependencies: 109s python3-pbcore : Depends: python3-pysam but it is not installable 109s E: Unable to correct problems, you have held broken packages. 109s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Starting pkgProblemResolver with broken count: 1 110s Starting 2 pkgProblemResolver with broken count: 1 110s Investigating (0) python3-pbcore:s390x < none -> 2.1.2+dfsg-10 @un puN Ib > 110s Broken python3-pbcore:s390x Depends on python3-biopython:s390x < none | 1.84+dfsg-4build1 @un uH > 110s Considering python3-biopython:s390x 1 as a solution to python3-pbcore:s390x 1 110s Re-Instated libfreetype6:s390x 110s Re-Instated libgomp1:s390x 110s Re-Instated libimagequant0:s390x 110s Re-Instated libjpeg-turbo8:s390x 110s Re-Instated libjpeg8:s390x 110s Re-Instated liblcms2-2:s390x 110s Re-Instated libopenjp2-7:s390x 110s Re-Instated libgraphite2-3:s390x 110s Re-Instated libharfbuzz0b:s390x 110s Re-Instated libraqm0:s390x 110s Re-Instated libdeflate0:s390x 110s Re-Instated libjbig0:s390x 110s Re-Instated libsharpyuv0:s390x 110s Re-Instated libwebp7:s390x 110s Re-Instated libtiff6:s390x 110s Re-Instated libwebpdemux2:s390x 110s Re-Instated libwebpmux3:s390x 110s Re-Instated python3-pil:s390x 110s Re-Instated fonts-dejavu-mono:s390x 110s Re-Instated fonts-dejavu-core:s390x 110s Re-Instated fontconfig-config:s390x 110s Re-Instated libfontconfig1:s390x 110s Re-Instated libpixman-1-0:s390x 110s Re-Instated libxcb-render0:s390x 110s Re-Instated libxcb-shm0:s390x 110s Re-Instated libxrender1:s390x 110s Re-Instated libcairo2:s390x 110s Re-Instated python3-cairo:s390x 110s Re-Instated python3-freetype:s390x 110s Re-Instated python3-rlpycairo:s390x 110s Re-Instated libfontenc1:s390x 110s Re-Instated x11-common:s390x 110s Re-Instated xfonts-encodings:s390x 110s Re-Instated xfonts-utils:s390x 110s Re-Instated fonts-urw-base35:s390x 110s Re-Instated python3-reportlab:s390x 110s Re-Instated sgml-base:s390x 110s Re-Instated xml-core:s390x 110s Re-Instated w3c-sgml-lib:s390x 110s Re-Instated python3-biopython:s390x 110s Broken python3-pbcore:s390x Depends on python3-pysam:s390x < none @un H > 110s Done 110s Some packages could not be installed. This may mean that you have 110s requested an impossible situation or if you are using the unstable 110s distribution that some required packages have not yet been created 110s or been moved out of Incoming. 110s The following information may help to resolve the situation: 110s 110s The following packages have unmet dependencies: 110s python3-pbcore : Depends: python3-pysam but it is not installable 110s E: Unable to correct problems, you have held broken packages. 110s run-unit-test SKIP installation fails and skip-not-installable set 110s autopkgtest [16:08:27]: @@@@@@@@@@@@@@@@@@@@ summary 110s run-unit-test SKIP installation fails and skip-not-installable set 128s nova [W] Using flock in prodstack6-s390x 128s Creating nova instance adt-plucky-s390x-python-pbcommand-20250103-160637-juju-7f2275-prod-proposed-migration-environment-2-975cf745-8429-4a1d-8bd8-966fdb7da382 from image adt/ubuntu-plucky-s390x-server-20250103.img (UUID 9816a864-89cd-473a-b7ab-55eae81bf00a)... 128s nova [W] Timed out waiting for 58878379-3572-47b9-b851-9f14fce0bc26 to get deleted.