0s autopkgtest [01:44:24]: starting date and time: 2025-03-16 01:44:24+0000 0s autopkgtest [01:44:24]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:44:24]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fldjm7ig/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-21.secgroup --name adt-plucky-s390x-python-pauvre-20250316-014424-juju-7f2275-prod-proposed-migration-environment-2-9e1b83a7-ba72-4df2-9a12-fff7f08fdfeb --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 96s autopkgtest [01:46:00]: testbed dpkg architecture: s390x 96s autopkgtest [01:46:00]: testbed apt version: 2.9.33 97s autopkgtest [01:46:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 97s autopkgtest [01:46:01]: testbed release detected to be: None 98s autopkgtest [01:46:02]: updating testbed package index (apt update) 98s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 98s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 98s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 98s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 98s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 98s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 98s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 98s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [75.4 kB] 98s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1784 B] 98s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 98s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [294 kB] 98s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [12.3 kB] 98s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4956 B] 98s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 99s Fetched 940 kB in 1s (1167 kB/s) 99s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Calculating upgrade... 100s Calculating upgrade... 100s The following packages were automatically installed and are no longer required: 100s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 100s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 100s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 100s linux-tools-6.11.0-8-generic 100s Use 'sudo apt autoremove' to remove them. 100s The following packages will be upgraded: 100s pinentry-curses python3-jinja2 strace 101s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Need to get 652 kB of archives. 101s After this operation, 27.6 kB of additional disk space will be used. 101s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 101s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 101s Fetched 652 kB in 1s (1042 kB/s) 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 101s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 101s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 101s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 101s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 101s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 102s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 102s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 102s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 102s Setting up strace (6.13+ds-1ubuntu1) ... 102s Processing triggers for man-db (2.13.0-1) ... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Solving dependencies... 103s The following packages will be REMOVED: 103s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 103s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 103s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 103s linux-tools-6.11.0-8-generic* 103s 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. 103s After this operation, 167 MB disk space will be freed. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 103s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 103s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 103s Removing libpython3.12t64:s390x (3.12.9-1) ... 103s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 103s Removing libnsl2:s390x (1.3.0-3build3) ... 103s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 103s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 103s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 104s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 104s Processing triggers for libc-bin (2.41-1ubuntu1) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 104s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 104s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 104s autopkgtest [01:46:08]: upgrading testbed (apt dist-upgrade and autopurge) 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 105s Entering ResolveByKeep 105s 105s Calculating upgrade... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 106s Solving dependencies... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [01:46:10]: rebooting testbed after setup commands that affected boot 124s autopkgtest [01:46:28]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 127s autopkgtest [01:46:31]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 128s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (dsc) [2485 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (tar) [61.9 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (diff) [8548 B] 128s gpgv: Signature made Thu Nov 7 22:55:52 2024 UTC 128s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 128s gpgv: issuer "emollier@debian.org" 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: no acceptable signature found 128s autopkgtest [01:46:32]: testing package python-pauvre version 0.2.3-4 129s autopkgtest [01:46:33]: build not needed 129s autopkgtest [01:46:33]: test run-unit-test: preparing testbed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 130s Starting 2 pkgProblemResolver with broken count: 0 130s Done 130s The following NEW packages will be installed: 130s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 130s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 130s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 130s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 130s liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libpixman-1-0 libqhull-r8.0 130s libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 130s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 130s libxss1 python-matplotlib-data python3-biopython python3-brotli 130s python3-cairo python3-contourpy python3-cycler python3-dateutil 130s python3-decorator python3-fonttools python3-freetype python3-fs 130s python3-joblib python3-kiwisolver python3-lxml python3-lz4 130s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 130s python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib 130s python3-pauvre python3-pil python3-pil.imagetk python3-platformdirs 130s python3-pytz python3-reportlab python3-rlpycairo python3-scipy 130s python3-sklearn python3-sklearn-lib python3-sympy python3-threadpoolctl 130s python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk 130s python3.13-tk sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common 130s xfonts-encodings xfonts-utils xml-core 130s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 130s Need to get 130 MB of archives. 130s After this operation, 432 MB of additional disk space will be used. 130s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy-dev s390x 1:2.2.3+ds-5 [147 kB] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 130s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 130s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:2.2.3+ds-5 [4396 kB] 131s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x sgml-base all 1.31 [11.4 kB] 131s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 131s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 131s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 131s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 131s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 131s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 131s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 131s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 131s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 131s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 131s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 131s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 131s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 131s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 131s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 131s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-8 [657 kB] 131s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x blt s390x 2.5.3+dfsg-8 [4826 B] 131s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lyx all 2.4.3-1 [171 kB] 131s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 131s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 131s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 131s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 131s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 131s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 131s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 131s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 131s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 131s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 131s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 131s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 131s Get:37 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 131s Get:38 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 131s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 131s Get:40 http://ftpmaster.internal/ubuntu plucky/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB] 131s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.2-1 [15.8 kB] 131s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 131s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 131s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 131s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 131s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB] 131s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB] 131s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libxslt1.1 s390x 1.1.39-0exp1ubuntu2 [169 kB] 131s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x python-matplotlib-data all 3.8.3-7build1 [2934 kB] 131s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-tk s390x 3.12.9-1 [117 kB] 131s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-tk s390x 3.13.2-2 [108 kB] 131s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tk s390x 3.13.1-1 [9770 B] 131s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pil.imagetk s390x 11.1.0-5build1 [9668 B] 131s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.3-2 [207 kB] 131s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 11.1.0-5build1 [498 kB] 131s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cairo s390x 1.26.1-2build2 [120 kB] 131s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-freetype all 2.5.1-1 [92.3 kB] 131s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 132s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-reportlab all 4.3.1-1 [1137 kB] 132s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x xml-core all 0.19 [20.3 kB] 132s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 132s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-biopython s390x 1.85+dfsg-2build1 [1745 kB] 132s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-brotli s390x 1.1.0-2build4 [380 kB] 132s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-contourpy s390x 1.3.1-1build1 [197 kB] 132s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cycler all 0.12.1-1 [9716 B] 132s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-3 [80.2 kB] 132s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 132s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x python3-platformdirs all 4.3.6-1 [16.8 kB] 132s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fs all 2.4.16-7 [90.8 kB] 132s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lxml s390x 5.3.1-1build1 [1370 kB] 132s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lz4 s390x 4.4.0+dfsg-1build1 [26.6 kB] 132s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.14.1-4ubuntu2 [18.0 MB] 132s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 132s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-5 [4229 kB] 133s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 133s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-unicodedata2 s390x 15.1.0+ds-1build3 [361 kB] 133s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x unicode-data all 15.1.0-1 [8878 kB] 133s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fonttools s390x 4.55.3-2build1 [1496 kB] 133s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-joblib all 1.4.2-3 [205 kB] 133s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-kiwisolver s390x 1.4.7-3build1 [55.0 kB] 133s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 133s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib s390x 3.8.3-7build1 [17.3 MB] 134s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-nanoget-examples all 1.19.3-1 [26.2 MB] 135s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pytz all 2025.1-3 [162 kB] 135s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2025.1-3 [1866 B] 135s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.3+dfsg-8build1 [4995 kB] 135s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 135s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 135s Get:89 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-8 [4262 kB] 135s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 135s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pauvre all 0.2.3-4 [52.7 kB] 136s Fetched 130 MB in 5s (24.2 MB/s) 136s Selecting previously unselected package python3-numpy-dev:s390x. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 136s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_s390x.deb ... 136s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 136s Selecting previously unselected package libblas3:s390x. 136s Preparing to unpack .../01-libblas3_3.12.1-2_s390x.deb ... 136s Unpacking libblas3:s390x (3.12.1-2) ... 136s Selecting previously unselected package libgfortran5:s390x. 136s Preparing to unpack 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136s Selecting previously unselected package fonts-dejavu-mono. 136s Preparing to unpack .../08-fonts-dejavu-mono_2.37-8_all.deb ... 136s Unpacking fonts-dejavu-mono (2.37-8) ... 136s Selecting previously unselected package fonts-dejavu-core. 136s Preparing to unpack .../09-fonts-dejavu-core_2.37-8_all.deb ... 136s Unpacking fonts-dejavu-core (2.37-8) ... 136s Selecting previously unselected package libfontenc1:s390x. 136s Preparing to unpack .../10-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 136s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 136s Selecting previously unselected package x11-common. 136s Preparing to unpack .../11-x11-common_1%3a7.7+23ubuntu3_all.deb ... 136s Unpacking x11-common (1:7.7+23ubuntu3) ... 136s Selecting previously unselected package xfonts-encodings. 136s Preparing to unpack .../12-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 136s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 136s Selecting previously unselected package xfonts-utils. 136s 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Selecting previously unselected package libjs-jquery. 136s Preparing to unpack .../35-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 136s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 136s Selecting previously unselected package libjs-jquery-ui. 136s Preparing to unpack .../36-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 136s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 136s Selecting previously unselected package liblbfgsb0:s390x. 136s Preparing to unpack .../37-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 136s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 137s Selecting previously unselected package liblcms2-2:s390x. 137s Preparing to unpack .../38-liblcms2-2_2.16-2_s390x.deb ... 137s Unpacking liblcms2-2:s390x (2.16-2) ... 137s Selecting previously unselected package libqhull-r8.0:s390x. 137s Preparing to unpack .../39-libqhull-r8.0_2020.2-6build1_s390x.deb ... 137s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ... 137s Selecting previously unselected package libraqm0:s390x. 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libwebpdemux2:s390x (1.5.0-0.1) ... 137s Selecting previously unselected package libwebpmux3:s390x. 137s Preparing to unpack .../46-libwebpmux3_1.5.0-0.1_s390x.deb ... 137s Unpacking libwebpmux3:s390x (1.5.0-0.1) ... 137s Selecting previously unselected package libxslt1.1:s390x. 137s Preparing to unpack .../47-libxslt1.1_1.1.39-0exp1ubuntu2_s390x.deb ... 137s Unpacking libxslt1.1:s390x (1.1.39-0exp1ubuntu2) ... 137s Selecting previously unselected package python-matplotlib-data. 137s Preparing to unpack .../48-python-matplotlib-data_3.8.3-7build1_all.deb ... 137s Unpacking python-matplotlib-data (3.8.3-7build1) ... 137s Selecting previously unselected package python3.12-tk. 137s Preparing to unpack .../49-python3.12-tk_3.12.9-1_s390x.deb ... 137s Unpacking python3.12-tk (3.12.9-1) ... 137s Selecting previously unselected package python3.13-tk. 137s Preparing to unpack .../50-python3.13-tk_3.13.2-2_s390x.deb ... 137s Unpacking python3.13-tk (3.13.2-2) ... 137s Selecting previously 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to unpack .../56-python3-freetype_2.5.1-1_all.deb ... 137s Unpacking python3-freetype (2.5.1-1) ... 137s Selecting previously unselected package python3-rlpycairo. 137s Preparing to unpack .../57-python3-rlpycairo_0.3.0-3_all.deb ... 137s Unpacking python3-rlpycairo (0.3.0-3) ... 137s Selecting previously unselected package python3-reportlab. 137s Preparing to unpack .../58-python3-reportlab_4.3.1-1_all.deb ... 137s Unpacking python3-reportlab (4.3.1-1) ... 137s Selecting previously unselected package xml-core. 137s Preparing to unpack .../59-xml-core_0.19_all.deb ... 137s Unpacking xml-core (0.19) ... 137s Selecting previously unselected package w3c-sgml-lib. 137s Preparing to unpack .../60-w3c-sgml-lib_1.3-3_all.deb ... 137s Unpacking w3c-sgml-lib (1.3-3) ... 137s Selecting previously unselected package python3-biopython. 137s Preparing to unpack .../61-python3-biopython_1.85+dfsg-2build1_s390x.deb ... 137s Unpacking python3-biopython (1.85+dfsg-2build1) ... 137s Selecting previously 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(11.1.0-5build1) ... 155s Setting up python3-rlpycairo (0.3.0-3) ... 155s Setting up python3-reportlab (4.3.1-1) ... 155s Setting up python3-fonttools (4.55.3-2build1) ... 156s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 156s Setting up python3-matplotlib (3.8.3-7build1) ... 157s Processing triggers for libc-bin (2.41-1ubuntu1) ... 157s Processing triggers for man-db (2.13.0-1) ... 158s Processing triggers for sgml-base (1.31) ... 158s Setting up w3c-sgml-lib (1.3-3) ... 178s Setting up python3-biopython (1.85+dfsg-2build1) ... 178s Setting up python3-pauvre (0.2.3-4) ... 180s autopkgtest [01:47:24]: test run-unit-test: [----------------------- 180s 180s #git clone https://github.com/wdecoster/nanotest.git 180s 180s pauvre -h 180s usage: pauvre [-h] [-v] 180s {browser,custommargin,marginplot,redwood,stats,synplot} ... 180s 180s options: 180s -h, --help show this help message and exit 180s -v, --version Installed pauvre version 180s 180s [sub-commands]: 180s {browser,custommargin,marginplot,redwood,stats,synplot} 180s browser an adaptable genome browser with various track types 180s custommargin plot custom marginal histograms of tab-delimited files 180s marginplot plot a marginal histogram of a fastq file 180s redwood make a redwood plot from a bam file 180s stats outputs stats from a fastq file 180s synplot make a synteny plot from a gff file, protein 180s alignment, and partition file 180s 180s pauvre marginplot -h 180s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 180s [--fileform STRING [STRING ...]] 180s [--filt_maxlen FILT_MAXLEN] 180s [--filt_maxqual FILT_MAXQUAL] 180s [--filt_minlen FILT_MINLEN] 180s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 180s [--no_timestamp] [-o BASENAME] 180s [--plot_maxlen PLOT_MAXLEN] 180s [--plot_maxqual PLOT_MAXQUAL] 180s [--plot_minlen PLOT_MINLEN] 180s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 180s [--qualbin QUALBIN] [-t TITLE] [-y] 180s 180s options: 180s -h, --help show this help message and exit 180s -q, --quiet Do not output warnings to stderr 180s --dpi dpi Change the dpi from the default 600 if you need it 180s higher 180s -f, --fastq FASTQ The input FASTQ file. 180s --fileform STRING [STRING ...] 180s Which output format would you like? Def.=png 180s --filt_maxlen FILT_MAXLEN 180s This sets the max read length filter reads. 180s --filt_maxqual FILT_MAXQUAL 180s This sets the max mean read quality to filter reads. 180s --filt_minlen FILT_MINLEN 180s This sets the min read length to filter reads. 180s --filt_minqual FILT_MINQUAL 180s This sets the min mean read quality to filter reads. 180s --kmerdf KMERDF Pass the filename of a data matrix if you would like 180s to plot read length versus number of kmers in that 180s read. The data matrix is a tab-separated text file 180s with columns "id length numks and kmers", where: 180s = read id = the length of the read = 180s the number of canonical kmers in the read = a 180s list representation of kmers ie ['GAT', 'GTA'] 180s -n, --no_transparent Specify this option if you don't want a transparent 180s background. Default is on. 180s --no_timestamp Turn off time stamps in the filename output. 180s -o, --output_base_name BASENAME 180s Specify a base name for the output file(s). The input 180s file base name is the default. 180s --plot_maxlen PLOT_MAXLEN 180s Sets the maximum viewing area in the length dimension. 180s --plot_maxqual PLOT_MAXQUAL 180s Sets the maximum viewing area in the quality 180s dimension. 180s --plot_minlen PLOT_MINLEN 180s Sets the minimum viewing area in the length dimension. 180s --plot_minqual PLOT_MINQUAL 180s Sets the minimum viewing area in the quality 180s dimension. 180s --lengthbin LENGTHBIN 180s This sets the bin size to use for length. 180s --qualbin QUALBIN This sets the bin size to use for quality 180s -t, --title TITLE This sets the title for the whole plot. Use --title 180s "Crustacean's DNA read quality" if you need single 180s quote or apostrophe inside title. 180s -y, --add-yaxes Add Y-axes to both marginal histograms. 180s pauvre marginplot -f nanotest/reads.fastq.gz 182s Keeping reads that satisfy: length >= 0 and meanQual >= 0 182s # Fastq stats for reads.fastq.gz, reads >= 0bp 182s numReads: 371 182s %totalNumReads: 100.00 182s numBasepairs: 8611871 182s %totalBasepairs: 100.00 182s meanLen: 23212.590296495957 182s medianLen: 9390.0 182s minLen: 212 182s maxLen: 393431 182s N50: 60395 182s L50: 36 182s 182s # Fastq stats for reads.fastq.gz, reads >= 1000bp 182s numReads: 349 182s %totalNumReads: 94.07 182s numBasepairs: 8599196 182s %totalBasepairs: 99.85 182s meanLen: 24639.530085959886 182s medianLen: 10585.0 182s minLen: 1009 182s maxLen: 393431 182s N50: 60395 182s L50: 36 182s 182s # Fastq stats for reads.fastq.gz, reads >= 5000bp 182s numReads: 246 182s %totalNumReads: 66.31 182s numBasepairs: 8296771 182s %totalBasepairs: 96.34 182s meanLen: 33726.71138211382 182s medianLen: 17146.0 182s minLen: 5082 182s maxLen: 393431 182s N50: 61111 182s L50: 33 182s 182s # Fastq stats for reads.fastq.gz, reads >= 10000bp 182s numReads: 178 182s %totalNumReads: 47.98 182s numBasepairs: 7817574 182s %totalBasepairs: 90.78 182s meanLen: 43918.95505617977 182s medianLen: 25216.5 182s minLen: 10192 182s maxLen: 393431 182s N50: 67193 182s L50: 30 182s 182s 182s Basepairs >= bin by mean PHRED and length 182s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 182s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 182s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 182s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 182s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 182s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 182s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 182s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 182s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 182s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 182s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 182s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 182s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 182s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 182s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 182s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 182s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 182s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 182s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 182s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 182s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 182s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 182s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 182s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 182s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 182s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 182s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 182s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 182s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 182s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 182s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 182s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 182s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 182s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 182s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 182s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 182s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 182s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 182s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 182s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 182s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 182s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 182s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 182s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 182s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 182s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 182s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 182s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 182s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 182s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 182s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 182s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 182s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 182s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 182s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 182s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 182s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 182s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 182s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 182s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 182s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 182s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 182s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 182s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 182s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 182s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 182s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 182s 140000 1699582 1699582 1378920 930176 341725 0 0 0 182s 160000 1699582 1699582 1378920 930176 341725 0 0 0 182s 180000 1699582 1699582 1378920 930176 341725 0 0 0 182s 200000 1504562 1504562 1183900 735156 341725 0 0 0 182s 220000 1504562 1504562 1183900 735156 341725 0 0 0 182s 240000 1055818 1055818 735156 735156 341725 0 0 0 182s 260000 1055818 1055818 735156 735156 341725 0 0 0 182s 280000 1055818 1055818 735156 735156 341725 0 0 0 182s 300000 1055818 1055818 735156 735156 341725 0 0 0 182s 320000 1055818 1055818 735156 735156 341725 0 0 0 182s 340000 735156 735156 735156 735156 341725 0 0 0 182s 360000 393431 393431 393431 393431 0 0 0 0 182s 380000 393431 393431 393431 393431 0 0 0 0 182s 400000 0 0 0 0 0 0 0 0 182s 182s Number of reads >= bin by mean Phred+Len 182s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 182s 0 371 321 277 207 114 49 2 0 182s 250 369 320 276 206 113 48 2 0 182s 500 363 315 273 203 112 47 2 0 182s 750 355 311 270 201 111 46 2 0 182s 1000 349 307 266 197 108 44 2 0 182s 1500 341 302 263 194 106 44 2 0 182s 2000 322 284 245 179 98 42 2 0 182s 2500 308 271 233 172 94 40 2 0 182s 3000 296 264 227 167 93 40 2 0 182s 3500 282 251 215 156 84 36 2 0 182s 4000 268 237 201 144 79 36 2 0 182s 4500 256 226 192 140 77 34 2 0 182s 5000 246 216 184 134 73 33 2 0 182s 5500 236 208 176 130 72 32 1 0 182s 6000 226 199 167 121 68 30 1 0 182s 6500 215 190 160 115 65 28 0 0 182s 7000 209 185 156 113 64 28 0 0 182s 7500 203 179 151 110 62 26 0 0 182s 8000 197 174 146 106 59 25 0 0 182s 8500 191 170 142 103 57 25 0 0 182s 9000 188 167 140 101 56 24 0 0 182s 9500 182 161 137 100 55 24 0 0 182s 10000 178 157 135 99 54 24 0 0 182s 11000 169 150 129 94 51 24 0 0 182s 12000 160 142 122 90 48 22 0 0 182s 13000 144 128 111 84 46 21 0 0 182s 14000 138 123 107 80 44 19 0 0 182s 15000 134 119 103 76 41 18 0 0 182s 16000 130 116 100 74 41 18 0 0 182s 17000 123 109 94 69 38 17 0 0 182s 18000 119 105 90 65 34 16 0 0 182s 19000 115 102 87 63 33 15 0 0 182s 20000 111 98 84 61 33 15 0 0 182s 21000 105 93 80 58 30 13 0 0 182s 22000 100 90 77 56 28 12 0 0 182s 23000 96 86 73 53 26 11 0 0 182s 24000 94 84 71 51 26 11 0 0 182s 25000 90 80 68 49 25 11 0 0 182s 26000 88 78 67 49 25 11 0 0 182s 27000 84 74 64 47 23 10 0 0 182s 28000 81 71 61 46 22 9 0 0 182s 29000 76 66 57 42 21 8 0 0 182s 30000 71 61 52 38 20 8 0 0 182s 31000 69 59 50 36 19 7 0 0 182s 32000 67 57 48 34 18 7 0 0 182s 33000 66 56 47 33 18 7 0 0 182s 34000 66 56 47 33 18 7 0 0 182s 35000 64 55 46 32 18 7 0 0 182s 36000 61 52 45 31 18 7 0 0 182s 37000 58 49 44 30 17 7 0 0 182s 38000 58 49 44 30 17 7 0 0 182s 39000 57 49 44 30 17 7 0 0 182s 40000 57 49 44 30 17 7 0 0 182s 45000 52 46 42 29 17 7 0 0 182s 50000 47 42 38 25 16 6 0 0 182s 55000 43 38 34 21 13 4 0 0 182s 60000 36 31 28 18 10 3 0 0 182s 65000 32 28 25 16 9 2 0 0 182s 70000 28 25 23 14 9 2 0 0 182s 75000 23 21 19 12 7 2 0 0 182s 80000 21 19 18 11 7 2 0 0 182s 85000 20 18 17 11 7 2 0 0 182s 90000 17 16 15 10 6 2 0 0 182s 95000 17 16 15 10 6 2 0 0 182s 100000 14 13 12 8 4 1 0 0 182s 120000 10 9 8 5 2 0 0 0 182s 140000 6 6 5 3 1 0 0 0 182s 160000 6 6 5 3 1 0 0 0 182s 180000 6 6 5 3 1 0 0 0 182s 200000 5 5 4 2 1 0 0 0 182s 220000 5 5 4 2 1 0 0 0 182s 240000 3 3 2 2 1 0 0 0 182s 260000 3 3 2 2 1 0 0 0 182s 280000 3 3 2 2 1 0 0 0 182s 300000 3 3 2 2 1 0 0 0 182s 320000 3 3 2 2 1 0 0 0 182s 340000 2 2 2 2 1 0 0 0 182s 360000 1 1 1 1 0 0 0 0 182s 380000 1 1 1 1 0 0 0 0 182s 400000 0 0 0 0 0 0 0 0 182s plotting in the following window: 182s 0 <= Q-score (x-axis) <= 14.0 182s 0 <= length (y-axis) <= 223383 183s 183s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 184s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 185s plotting in the following window: 185s 0 <= Q-score (x-axis) <= 14.0 185s 0 <= length (y-axis) <= 29294 186s # Fastq stats for reads.fastq.gz, reads >= 0bp 186s numReads: 300 186s %totalNumReads: 100.00 186s numBasepairs: 2729844 186s %totalBasepairs: 100.00 186s meanLen: 9099.48 186s medianLen: 6204.5 186s minLen: 212 186s maxLen: 29590 186s N50: 15222 186s L50: 61 186s 186s # Fastq stats for reads.fastq.gz, reads >= 1000bp 186s numReads: 278 186s %totalNumReads: 92.67 186s numBasepairs: 2717169 186s %totalBasepairs: 99.54 186s meanLen: 9773.989208633093 186s medianLen: 6910.0 186s minLen: 1009 186s maxLen: 29590 186s N50: 15222 186s L50: 61 186s 186s # Fastq stats for reads.fastq.gz, reads >= 5000bp 186s numReads: 175 186s %totalNumReads: 58.33 186s numBasepairs: 2414744 186s %totalBasepairs: 88.46 186s meanLen: 13798.537142857143 186s medianLen: 12063.0 186s minLen: 5082 186s maxLen: 29590 186s N50: 17307 186s L50: 52 186s 186s # Fastq stats for reads.fastq.gz, reads >= 10000bp 186s numReads: 107 186s %totalNumReads: 35.67 186s numBasepairs: 1935547 186s %totalBasepairs: 70.90 186s meanLen: 18089.22429906542 186s medianLen: 16881.0 186s minLen: 10192 186s maxLen: 29590 186s N50: 20295 186s L50: 39 186s 186s 186s Basepairs >= bin by mean PHRED and length 186s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 186s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 186s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 186s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 186s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 186s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 186s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 186s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 186s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 186s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 186s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 186s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 186s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 186s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 186s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 186s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 186s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 186s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 186s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 186s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 186s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 186s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 186s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 186s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 186s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 186s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 186s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 186s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 186s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 186s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 186s 17000 1217331 1135448 990860 726799 401685 202825 0 0 186s 18000 1146730 1064847 920259 656198 331084 185250 0 0 186s 19000 1072466 1008770 864182 618776 312433 166599 0 0 186s 20000 993686 929990 805391 579331 312433 166599 0 0 186s 21000 870897 827698 723394 518156 251258 126075 0 0 186s 22000 763379 763379 659075 475682 208784 104960 0 0 186s 23000 673728 673728 569424 408210 163731 82719 0 0 186s 24000 627024 627024 522720 361506 163731 82719 0 0 186s 25000 528646 528646 448453 312153 138944 82719 0 0 186s 26000 478213 478213 423121 312153 138944 82719 0 0 186s 27000 372570 372570 343949 259378 86169 56621 0 0 186s 28000 289458 289458 260837 231544 58335 28787 0 0 186s 29000 147115 147115 147115 117822 29548 0 0 0 186s 30000 0 0 0 0 0 0 0 0 186s 186s Number of reads >= bin by mean Phred+Len 186s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 186s 0 300 260 225 169 94 41 2 0 186s 250 298 259 224 168 93 40 2 0 186s 500 292 254 221 165 92 39 2 0 186s 750 284 250 218 163 91 38 2 0 186s 1000 278 246 214 159 88 36 2 0 186s 1500 270 241 211 156 86 36 2 0 186s 2000 251 223 193 141 78 34 2 0 186s 2500 237 210 181 134 74 32 2 0 186s 3000 225 203 175 129 73 32 2 0 186s 3500 211 190 163 118 64 28 2 0 186s 4000 197 176 149 106 59 28 2 0 186s 4500 185 165 140 102 57 26 2 0 186s 5000 175 155 132 96 53 25 2 0 186s 5500 165 147 124 92 52 24 1 0 186s 6000 155 138 115 83 48 22 1 0 186s 6500 144 129 108 77 45 20 0 0 186s 7000 138 124 104 75 44 20 0 0 186s 7500 132 118 99 72 42 18 0 0 186s 8000 126 113 94 68 39 17 0 0 186s 8500 120 109 90 65 37 17 0 0 186s 9000 117 106 88 63 36 16 0 0 186s 9500 111 100 85 62 35 16 0 0 186s 10000 107 96 83 61 34 16 0 0 186s 11000 98 89 77 56 31 16 0 0 186s 12000 89 81 70 52 28 14 0 0 186s 13000 73 67 59 46 26 13 0 0 186s 14000 67 62 55 42 24 11 0 0 186s 15000 63 58 51 38 21 10 0 0 186s 16000 59 55 48 36 21 10 0 0 186s 17000 52 48 42 31 18 9 0 0 186s 18000 48 44 38 27 14 8 0 0 186s 19000 44 41 35 25 13 7 0 0 186s 20000 40 37 32 23 13 7 0 0 186s 21000 34 32 28 20 10 5 0 0 186s 22000 29 29 25 18 8 4 0 0 186s 23000 25 25 21 15 6 3 0 0 186s 24000 23 23 19 13 6 3 0 0 186s 25000 19 19 16 11 5 3 0 0 186s 26000 17 17 15 11 5 3 0 0 186s 27000 13 13 12 9 3 2 0 0 186s 28000 10 10 9 8 2 1 0 0 186s 29000 5 5 5 4 1 0 0 0 186s 30000 0 0 0 0 0 0 0 0 186s 186s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 187s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 188s # Fastq stats for reads.fastq.gz, reads >= 0bp 188s numReads: 371 188s %totalNumReads: 100.00 188s numBasepairs: 8611871 188s %totalBasepairs: 100.00 188s meanLen: 23212.590296495957 188s medianLen: 9390.0 188s minLen: 212 188s maxLen: 393431 188s N50: 60395 188s L50: 36 188s 188s # Fastq stats for reads.fastq.gz, reads >= 1000bp 188s numReads: 349 188s %totalNumReads: 94.07 188s numBasepairs: 8599196 188s %totalBasepairs: 99.85 188s meanLen: 24639.530085959886 188s medianLen: 10585.0 188s minLen: 1009 188s maxLen: 393431 188s N50: 60395 188s L50: 36 188s 188s # Fastq stats for reads.fastq.gz, reads >= 5000bp 188s numReads: 246 188s %totalNumReads: 66.31 188s numBasepairs: 8296771 188s %totalBasepairs: 96.34 188s meanLen: 33726.71138211382 188s medianLen: 17146.0 188s minLen: 5082 188s maxLen: 393431 188s N50: 61111 188s L50: 33 188s 188s # Fastq stats for reads.fastq.gz, reads >= 10000bp 188s numReads: 178 188s %totalNumReads: 47.98 188s numBasepairs: 7817574 188s %totalBasepairs: 90.78 188s meanLen: 43918.95505617977 188s medianLen: 25216.5 188s minLen: 10192 188s maxLen: 393431 188s N50: 67193 188s L50: 30 188s 188s 188s Basepairs >= bin by mean PHRED and length 188s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 188s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 188s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 188s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 188s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 188s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 188s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 188s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 188s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 188s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 188s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 188s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 188s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 188s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 188s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 188s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 188s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 188s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 188s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 188s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 188s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 188s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 188s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 188s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 188s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 188s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 188s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 188s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 188s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 188s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 188s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 188s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 188s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 188s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 188s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 188s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 188s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 188s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 188s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 188s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 188s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 188s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 188s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 188s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 188s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 188s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 188s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 188s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 188s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 188s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 188s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 188s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 188s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 188s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 188s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 188s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 188s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 188s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 188s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 188s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 188s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 188s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 188s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 188s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 188s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 188s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 188s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 188s 140000 1699582 1699582 1378920 930176 341725 0 0 0 188s 160000 1699582 1699582 1378920 930176 341725 0 0 0 188s 180000 1699582 1699582 1378920 930176 341725 0 0 0 188s 200000 1504562 1504562 1183900 735156 341725 0 0 0 188s 220000 1504562 1504562 1183900 735156 341725 0 0 0 188s 240000 1055818 1055818 735156 735156 341725 0 0 0 188s 260000 1055818 1055818 735156 735156 341725 0 0 0 188s 280000 1055818 1055818 735156 735156 341725 0 0 0 188s 300000 1055818 1055818 735156 735156 341725 0 0 0 188s 320000 1055818 1055818 735156 735156 341725 0 0 0 188s 340000 735156 735156 735156 735156 341725 0 0 0 188s 360000 393431 393431 393431 393431 0 0 0 0 188s 380000 393431 393431 393431 393431 0 0 0 0 188s 400000 0 0 0 0 0 0 0 0 188s 188s Number of reads >= bin by mean Phred+Len 188s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 188s 0 371 321 277 207 114 49 2 0 188s 250 369 320 276 206 113 48 2 0 188s 500 363 315 273 203 112 47 2 0 188s 750 355 311 270 201 111 46 2 0 188s 1000 349 307 266 197 108 44 2 0 188s 1500 341 302 263 194 106 44 2 0 188s 2000 322 284 245 179 98 42 2 0 188s 2500 308 271 233 172 94 40 2 0 188s 3000 296 264 227 167 93 40 2 0 188s 3500 282 251 215 156 84 36 2 0 188s 4000 268 237 201 144 79 36 2 0 188s 4500 256 226 192 140 77 34 2 0 188s 5000 246 216 184 134 73 33 2 0 188s 5500 236 208 176 130 72 32 1 0 188s 6000 226 199 167 121 68 30 1 0 188s 6500 215 190 160 115 65 28 0 0 188s 7000 209 185 156 113 64 28 0 0 188s 7500 203 179 151 110 62 26 0 0 188s 8000 197 174 146 106 59 25 0 0 188s 8500 191 170 142 103 57 25 0 0 188s 9000 188 167 140 101 56 24 0 0 188s 9500 182 161 137 100 55 24 0 0 188s 10000 178 157 135 99 54 24 0 0 188s 11000 169 150 129 94 51 24 0 0 188s 12000 160 142 122 90 48 22 0 0 188s 13000 144 128 111 84 46 21 0 0 188s 14000 138 123 107 80 44 19 0 0 188s 15000 134 119 103 76 41 18 0 0 188s 16000 130 116 100 74 41 18 0 0 188s 17000 123 109 94 69 38 17 0 0 188s 18000 119 105 90 65 34 16 0 0 188s 19000 115 102 87 63 33 15 0 0 188s 20000 111 98 84 61 33 15 0 0 188s 21000 105 93 80 58 30 13 0 0 188s 22000 100 90 77 56 28 12 0 0 188s 23000 96 86 73 53 26 11 0 0 188s 24000 94 84 71 51 26 11 0 0 188s 25000 90 80 68 49 25 11 0 0 188s 26000 88 78 67 49 25 11 0 0 188s 27000 84 74 64 47 23 10 0 0 188s 28000 81 71 61 46 22 9 0 0 188s 29000 76 66 57 42 21 8 0 0 188s 30000 71 61 52 38 20 8 0 0 188s 31000 69 59 50 36 19 7 0 0 188s 32000 67 57 48 34 18 7 0 0 188s 33000 66 56 47 33 18 7 0 0 188s 34000 66 56 47 33 18 7 0 0 188s 35000 64 55 46 32 18 7 0 0 188s 36000 61 52 45 31 18 7 0 0 188s 37000 58 49 44 30 17 7 0 0 188s 38000 58 49 44 30 17 7 0 0 188s 39000 57 49 44 30 17 7 0 0 188s 40000 57 49 44 30 17 7 0 0 188s 45000 52 46 42 29 17 7 0 0 188s 50000 47 42 38 25 16 6 0 0 188s 55000 43 38 34 21 13 4 0 0 188s 60000 36 31 28 18 10 3 0 0 188s 65000 32 28 25 16 9 2 0 0 188s 70000 28 25 23 14 9 2 0 0 188s 75000 23 21 19 12 7 2 0 0 188s 80000 21 19 18 11 7 2 0 0 188s 85000 20 18 17 11 7 2 0 0 188s 90000 17 16 15 10 6 2 0 0 188s 95000 17 16 15 10 6 2 0 0 188s 100000 14 13 12 8 4 1 0 0 188s 120000 10 9 8 5 2 0 0 0 188s 140000 6 6 5 3 1 0 0 0 188s 160000 6 6 5 3 1 0 0 0 188s 180000 6 6 5 3 1 0 0 0 188s 200000 5 5 4 2 1 0 0 0 188s 220000 5 5 4 2 1 0 0 0 188s 240000 3 3 2 2 1 0 0 0 188s 260000 3 3 2 2 1 0 0 0 188s 280000 3 3 2 2 1 0 0 0 188s 300000 3 3 2 2 1 0 0 0 188s 320000 3 3 2 2 1 0 0 0 188s 340000 2 2 2 2 1 0 0 0 188s 360000 1 1 1 1 0 0 0 0 188s 380000 1 1 1 1 0 0 0 0 188s 400000 0 0 0 0 0 0 0 0 188s plotting in the following window: 188s 0 <= Q-score (x-axis) <= 14.0 188s 0 <= length (y-axis) <= 223383 188s 189s 189s pauvre stats -h 189s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 189s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 189s [--filt_minqual FILT_MINQUAL] 189s 189s options: 189s -h, --help show this help message and exit 189s -q, --quiet Do not output warnings to stderr 189s -f, --fastq FASTQ The input FASTQ file. 189s -H, --histogram Make a histogram of the read lengths and saves it to a 189s new file 189s --filt_maxlen FILT_MAXLEN 189s This sets the max read length filter reads. 189s --filt_maxqual FILT_MAXQUAL 189s This sets the max mean read quality to filter reads. 189s --filt_minlen FILT_MINLEN 189s This sets the min read length to filter reads. 189s --filt_minqual FILT_MINQUAL 189s This sets the min mean read quality to filter reads. 189s pauvre stats -f nanotest/reads.fastq.gz 190s # Fastq stats for reads.fastq.gz, reads >= 0bp 190s numReads: 371 190s %totalNumReads: 100.00 190s numBasepairs: 8611871 190s %totalBasepairs: 100.00 190s meanLen: 23212.590296495957 190s medianLen: 9390.0 190s minLen: 212 190s maxLen: 393431 190s N50: 60395 190s L50: 36 190s 190s # Fastq stats for reads.fastq.gz, reads >= 1000bp 190s numReads: 349 190s %totalNumReads: 94.07 190s numBasepairs: 8599196 190s %totalBasepairs: 99.85 190s meanLen: 24639.530085959886 190s medianLen: 10585.0 190s minLen: 1009 190s maxLen: 393431 190s N50: 60395 190s L50: 36 190s 190s # Fastq stats for reads.fastq.gz, reads >= 5000bp 190s numReads: 246 190s %totalNumReads: 66.31 190s numBasepairs: 8296771 190s %totalBasepairs: 96.34 190s meanLen: 33726.71138211382 190s medianLen: 17146.0 190s minLen: 5082 190s maxLen: 393431 190s N50: 61111 190s L50: 33 190s 190s # Fastq stats for reads.fastq.gz, reads >= 10000bp 190s numReads: 178 190s %totalNumReads: 47.98 190s numBasepairs: 7817574 190s %totalBasepairs: 90.78 190s meanLen: 43918.95505617977 190s medianLen: 25216.5 190s minLen: 10192 190s maxLen: 393431 190s N50: 67193 190s L50: 30 190s 190s 190s Basepairs >= bin by mean PHRED and length 190s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 190s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 190s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 190s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 190s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 190s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 190s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 190s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 190s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 190s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 190s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 190s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 190s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 190s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 190s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 190s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 190s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 190s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 190s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 190s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 190s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 190s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 190s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 190s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 190s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 190s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 190s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 190s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 190s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 190s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 190s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 190s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 190s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 190s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 190s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 190s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 190s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 190s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 190s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 190s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 190s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 190s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 190s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 190s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 190s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 190s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 190s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 190s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 190s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 190s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 190s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 190s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 190s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 190s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 190s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 190s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 190s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 190s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 190s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 190s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 190s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 190s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 190s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 190s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 190s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 190s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 190s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 190s 140000 1699582 1699582 1378920 930176 341725 0 0 0 190s 160000 1699582 1699582 1378920 930176 341725 0 0 0 190s 180000 1699582 1699582 1378920 930176 341725 0 0 0 190s 200000 1504562 1504562 1183900 735156 341725 0 0 0 190s 220000 1504562 1504562 1183900 735156 341725 0 0 0 190s 240000 1055818 1055818 735156 735156 341725 0 0 0 190s 260000 1055818 1055818 735156 735156 341725 0 0 0 190s 280000 1055818 1055818 735156 735156 341725 0 0 0 190s 300000 1055818 1055818 735156 735156 341725 0 0 0 190s 320000 1055818 1055818 735156 735156 341725 0 0 0 190s 340000 735156 735156 735156 735156 341725 0 0 0 190s 360000 393431 393431 393431 393431 0 0 0 0 190s 380000 393431 393431 393431 393431 0 0 0 0 190s 400000 0 0 0 0 0 0 0 0 190s 190s Number of reads >= bin by mean Phred+Len 190s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 190s 0 371 321 277 207 114 49 2 0 190s 250 369 320 276 206 113 48 2 0 190s 500 363 315 273 203 112 47 2 0 190s 750 355 311 270 201 111 46 2 0 190s 1000 349 307 266 197 108 44 2 0 190s 1500 341 302 263 194 106 44 2 0 190s 2000 322 284 245 179 98 42 2 0 190s 2500 308 271 233 172 94 40 2 0 190s 3000 296 264 227 167 93 40 2 0 190s 3500 282 251 215 156 84 36 2 0 190s 4000 268 237 201 144 79 36 2 0 190s 4500 256 226 192 140 77 34 2 0 190s 5000 246 216 184 134 73 33 2 0 190s 5500 236 208 176 130 72 32 1 0 190s 6000 226 199 167 121 68 30 1 0 190s 6500 215 190 160 115 65 28 0 0 190s 7000 209 185 156 113 64 28 0 0 190s 7500 203 179 151 110 62 26 0 0 190s 8000 197 174 146 106 59 25 0 0 190s 8500 191 170 142 103 57 25 0 0 190s 9000 188 167 140 101 56 24 0 0 190s 9500 182 161 137 100 55 24 0 0 190s 10000 178 157 135 99 54 24 0 0 190s 11000 169 150 129 94 51 24 0 0 190s 12000 160 142 122 90 48 22 0 0 190s 13000 144 128 111 84 46 21 0 0 190s 14000 138 123 107 80 44 19 0 0 190s 15000 134 119 103 76 41 18 0 0 190s 16000 130 116 100 74 41 18 0 0 190s 17000 123 109 94 69 38 17 0 0 190s 18000 119 105 90 65 34 16 0 0 190s 19000 115 102 87 63 33 15 0 0 190s 20000 111 98 84 61 33 15 0 0 190s 21000 105 93 80 58 30 13 0 0 190s 22000 100 90 77 56 28 12 0 0 190s 23000 96 86 73 53 26 11 0 0 190s 24000 94 84 71 51 26 11 0 0 190s 25000 90 80 68 49 25 11 0 0 190s 26000 88 78 67 49 25 11 0 0 190s 27000 84 74 64 47 23 10 0 0 190s 28000 81 71 61 46 22 9 0 0 190s 29000 76 66 57 42 21 8 0 0 190s 30000 71 61 52 38 20 8 0 0 190s 31000 69 59 50 36 19 7 0 0 190s 32000 67 57 48 34 18 7 0 0 190s 33000 66 56 47 33 18 7 0 0 190s 34000 66 56 47 33 18 7 0 0 190s 35000 64 55 46 32 18 7 0 0 190s 36000 61 52 45 31 18 7 0 0 190s 37000 58 49 44 30 17 7 0 0 190s 38000 58 49 44 30 17 7 0 0 190s 39000 57 49 44 30 17 7 0 0 190s 40000 57 49 44 30 17 7 0 0 190s 45000 52 46 42 29 17 7 0 0 190s 50000 47 42 38 25 16 6 0 0 190s 55000 43 38 34 21 13 4 0 0 190s 60000 36 31 28 18 10 3 0 0 190s 65000 32 28 25 16 9 2 0 0 190s 70000 28 25 23 14 9 2 0 0 190s 75000 23 21 19 12 7 2 0 0 190s 80000 21 19 18 11 7 2 0 0 190s 85000 20 18 17 11 7 2 0 0 190s 90000 17 16 15 10 6 2 0 0 190s 95000 17 16 15 10 6 2 0 0 190s 100000 14 13 12 8 4 1 0 0 190s 120000 10 9 8 5 2 0 0 0 190s 140000 6 6 5 3 1 0 0 0 190s 160000 6 6 5 3 1 0 0 0 190s 180000 6 6 5 3 1 0 0 0 190s 200000 5 5 4 2 1 0 0 0 190s 220000 5 5 4 2 1 0 0 0 190s 240000 3 3 2 2 1 0 0 0 190s 260000 3 3 2 2 1 0 0 0 190s 280000 3 3 2 2 1 0 0 0 190s 300000 3 3 2 2 1 0 0 0 190s 320000 3 3 2 2 1 0 0 0 190s 340000 2 2 2 2 1 0 0 0 190s 360000 1 1 1 1 0 0 0 0 190s 380000 1 1 1 1 0 0 0 0 190s 400000 0 0 0 0 0 0 0 0 190s 190s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 192s # Fastq stats for reads.fastq.gz, reads >= 0bp 192s numReads: 371 192s %totalNumReads: 100.00 192s numBasepairs: 8611871 192s %totalBasepairs: 100.00 192s meanLen: 23212.590296495957 192s medianLen: 9390.0 192s minLen: 212 192s maxLen: 393431 192s N50: 60395 192s L50: 36 192s 192s # Fastq stats for reads.fastq.gz, reads >= 1000bp 192s numReads: 349 192s %totalNumReads: 94.07 192s numBasepairs: 8599196 192s %totalBasepairs: 99.85 192s meanLen: 24639.530085959886 192s medianLen: 10585.0 192s minLen: 1009 192s maxLen: 393431 192s N50: 60395 192s L50: 36 192s 192s # Fastq stats for reads.fastq.gz, reads >= 5000bp 192s numReads: 246 192s %totalNumReads: 66.31 192s numBasepairs: 8296771 192s %totalBasepairs: 96.34 192s meanLen: 33726.71138211382 192s medianLen: 17146.0 192s minLen: 5082 192s maxLen: 393431 192s N50: 61111 192s L50: 33 192s 192s # Fastq stats for reads.fastq.gz, reads >= 10000bp 192s numReads: 178 192s %totalNumReads: 47.98 192s numBasepairs: 7817574 192s %totalBasepairs: 90.78 192s meanLen: 43918.95505617977 192s medianLen: 25216.5 192s minLen: 10192 192s maxLen: 393431 192s N50: 67193 192s L50: 30 192s 192s 192s Basepairs >= bin by mean PHRED and length 192s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 192s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 192s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 192s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 192s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 192s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 192s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 192s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 192s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 192s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 192s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 192s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 192s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 192s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 192s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 192s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 192s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 192s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 192s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 192s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 192s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 192s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 192s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 192s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 192s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 192s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 192s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 192s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 192s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 192s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 192s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 192s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 192s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 192s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 192s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 192s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 192s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 192s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 192s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 192s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 192s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 192s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 192s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 192s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 192s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 192s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 192s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 192s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 192s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 192s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 192s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 192s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 192s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 192s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 192s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 192s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 192s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 192s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 192s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 192s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 192s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 192s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 192s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 192s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 192s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 192s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 192s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 192s 140000 1699582 1699582 1378920 930176 341725 0 0 0 192s 160000 1699582 1699582 1378920 930176 341725 0 0 0 192s 180000 1699582 1699582 1378920 930176 341725 0 0 0 192s 200000 1504562 1504562 1183900 735156 341725 0 0 0 192s 220000 1504562 1504562 1183900 735156 341725 0 0 0 192s 240000 1055818 1055818 735156 735156 341725 0 0 0 192s 260000 1055818 1055818 735156 735156 341725 0 0 0 192s 280000 1055818 1055818 735156 735156 341725 0 0 0 192s 300000 1055818 1055818 735156 735156 341725 0 0 0 192s 320000 1055818 1055818 735156 735156 341725 0 0 0 192s 340000 735156 735156 735156 735156 341725 0 0 0 192s 360000 393431 393431 393431 393431 0 0 0 0 192s 380000 393431 393431 393431 393431 0 0 0 0 192s 400000 0 0 0 0 0 0 0 0 192s 192s Number of reads >= bin by mean Phred+Len 192s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 192s 0 371 321 277 207 114 49 2 0 192s 250 369 320 276 206 113 48 2 0 192s 500 363 315 273 203 112 47 2 0 192s 750 355 311 270 201 111 46 2 0 192s 1000 349 307 266 197 108 44 2 0 192s 1500 341 302 263 194 106 44 2 0 192s 2000 322 284 245 179 98 42 2 0 192s 2500 308 271 233 172 94 40 2 0 192s 3000 296 264 227 167 93 40 2 0 192s 3500 282 251 215 156 84 36 2 0 192s 4000 268 237 201 144 79 36 2 0 192s 4500 256 226 192 140 77 34 2 0 192s 5000 246 216 184 134 73 33 2 0 192s 5500 236 208 176 130 72 32 1 0 192s 6000 226 199 167 121 68 30 1 0 192s 6500 215 190 160 115 65 28 0 0 192s 7000 209 185 156 113 64 28 0 0 192s 7500 203 179 151 110 62 26 0 0 192s 8000 197 174 146 106 59 25 0 0 192s 8500 191 170 142 103 57 25 0 0 192s 9000 188 167 140 101 56 24 0 0 192s 9500 182 161 137 100 55 24 0 0 192s 10000 178 157 135 99 54 24 0 0 192s 11000 169 150 129 94 51 24 0 0 192s 12000 160 142 122 90 48 22 0 0 192s 13000 144 128 111 84 46 21 0 0 192s 14000 138 123 107 80 44 19 0 0 192s 15000 134 119 103 76 41 18 0 0 192s 16000 130 116 100 74 41 18 0 0 192s 17000 123 109 94 69 38 17 0 0 192s 18000 119 105 90 65 34 16 0 0 192s 19000 115 102 87 63 33 15 0 0 192s 20000 111 98 84 61 33 15 0 0 192s 21000 105 93 80 58 30 13 0 0 192s 22000 100 90 77 56 28 12 0 0 192s 23000 96 86 73 53 26 11 0 0 192s 24000 94 84 71 51 26 11 0 0 192s 25000 90 80 68 49 25 11 0 0 192s 26000 88 78 67 49 25 11 0 0 192s 27000 84 74 64 47 23 10 0 0 192s 28000 81 71 61 46 22 9 0 0 192s 29000 76 66 57 42 21 8 0 0 192s 30000 71 61 52 38 20 8 0 0 192s 31000 69 59 50 36 19 7 0 0 192s 32000 67 57 48 34 18 7 0 0 192s 33000 66 56 47 33 18 7 0 0 192s 34000 66 56 47 33 18 7 0 0 192s 35000 64 55 46 32 18 7 0 0 192s 36000 61 52 45 31 18 7 0 0 192s 37000 58 49 44 30 17 7 0 0 192s 38000 58 49 44 30 17 7 0 0 192s 39000 57 49 44 30 17 7 0 0 192s 40000 57 49 44 30 17 7 0 0 192s 45000 52 46 42 29 17 7 0 0 192s 50000 47 42 38 25 16 6 0 0 192s 55000 43 38 34 21 13 4 0 0 192s 60000 36 31 28 18 10 3 0 0 192s 65000 32 28 25 16 9 2 0 0 192s 70000 28 25 23 14 9 2 0 0 192s 75000 23 21 19 12 7 2 0 0 192s 80000 21 19 18 11 7 2 0 0 192s 85000 20 18 17 11 7 2 0 0 192s 90000 17 16 15 10 6 2 0 0 192s 95000 17 16 15 10 6 2 0 0 192s 100000 14 13 12 8 4 1 0 0 192s 120000 10 9 8 5 2 0 0 0 192s 140000 6 6 5 3 1 0 0 0 192s 160000 6 6 5 3 1 0 0 0 192s 180000 6 6 5 3 1 0 0 0 192s 200000 5 5 4 2 1 0 0 0 192s 220000 5 5 4 2 1 0 0 0 192s 240000 3 3 2 2 1 0 0 0 192s 260000 3 3 2 2 1 0 0 0 192s 280000 3 3 2 2 1 0 0 0 192s 300000 3 3 2 2 1 0 0 0 192s 320000 3 3 2 2 1 0 0 0 192s 340000 2 2 2 2 1 0 0 0 192s 360000 1 1 1 1 0 0 0 0 192s 380000 1 1 1 1 0 0 0 0 192s 400000 0 0 0 0 0 0 0 0 192s 193s autopkgtest [01:47:37]: test run-unit-test: -----------------------] 193s autopkgtest [01:47:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 193s run-unit-test PASS 194s autopkgtest [01:47:38]: @@@@@@@@@@@@@@@@@@@@ summary 194s run-unit-test PASS 199s nova [W] Using flock in prodstack6-s390x 199s Creating nova instance adt-plucky-s390x-python-pauvre-20250316-014424-juju-7f2275-prod-proposed-migration-environment-2-9e1b83a7-ba72-4df2-9a12-fff7f08fdfeb from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 199s nova [W] Timed out waiting for ec83ce12-1d98-40ee-b0af-15864849fbe4 to get deleted.