0s autopkgtest [11:48:27]: starting date and time: 2025-01-08 11:48:27+0000 0s autopkgtest [11:48:27]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [11:48:27]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9eo3y41v/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade python-hdf5storage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-11.secgroup --name adt-plucky-s390x-python-hdf5storage-20250108-114827-juju-7f2275-prod-proposed-migration-environment-15-513f2126-bff6-4ebd-a4e8-c450936a348e --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 65s autopkgtest [11:49:32]: testbed dpkg architecture: s390x 65s autopkgtest [11:49:32]: testbed apt version: 2.9.18 65s autopkgtest [11:49:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s autopkgtest [11:49:32]: testbed release detected to be: None 66s autopkgtest [11:49:33]: updating testbed package index (apt update) 66s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 67s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 67s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 67s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 67s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [818 kB] 67s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [129 kB] 67s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 67s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.3 kB] 67s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [235 kB] 67s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [756 B] 67s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [913 kB] 67s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [5576 B] 67s Fetched 2201 kB in 1s (2294 kB/s) 68s Reading package lists... 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [11:49:36]: upgrading testbed (apt dist-upgrade and autopurge) 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 70s Starting 2 pkgProblemResolver with broken count: 0 70s Done 70s Entering ResolveByKeep 70s 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Starting pkgProblemResolver with broken count: 0 71s Starting 2 pkgProblemResolver with broken count: 0 71s Done 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s autopkgtest [11:49:41]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 74s autopkgtest [11:49:41]: @@@@@@@@@@@@@@@@@@@@ apt-source python-hdf5storage 76s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-hdf5storage 0.1.19-2 (dsc) [2495 B] 76s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-hdf5storage 0.1.19-2 (tar) [92.3 kB] 76s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-hdf5storage 0.1.19-2 (diff) [5776 B] 76s gpgv: Signature made Fri Sep 13 12:33:57 2024 UTC 76s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 76s gpgv: issuer "tchet@debian.org" 76s gpgv: Can't check signature: No public key 76s dpkg-source: warning: cannot verify inline signature for ./python-hdf5storage_0.1.19-2.dsc: no acceptable signature found 76s autopkgtest [11:49:43]: testing package python-hdf5storage version 0.1.19-2 77s autopkgtest [11:49:44]: build not needed 77s autopkgtest [11:49:44]: test command1: preparing testbed 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Starting pkgProblemResolver with broken count: 0 78s Starting 2 pkgProblemResolver with broken count: 0 78s Done 78s The following NEW packages will be installed: 78s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 78s liblbfgsb0 liblzf1 libsz2 python3-decorator python3-h5py python3-h5py-serial 78s python3-hdf5storage python3-iniconfig python3-numpy python3-packaging 78s python3-pluggy python3-pytest python3-scipy 78s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 33.2 MB of archives. 78s After this operation, 169 MB of additional disk space will be used. 78s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 78s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-4 [238 kB] 78s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-12ubuntu1 [587 kB] 78s Get:4 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 78s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-5ubuntu1 [1435 kB] 78s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-5ubuntu1 [58.1 kB] 78s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-4 [2964 kB] 79s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 79s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 79s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 79s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-12 [4601 kB] 79s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py-serial s390x 3.11.0-8ubuntu3 [1655 kB] 79s Get:13 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5py all 3.11.0-8ubuntu3 [7982 B] 79s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-hdf5storage all 0.1.19-2 [44.9 kB] 79s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 79s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 79s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 79s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 79s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.14.1-3ubuntu1 [21.2 MB] 80s Fetched 33.2 MB in 1s (23.6 MB/s) 80s Selecting previously unselected package libaec0:s390x. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55616 files and directories currently installed.) 80s Preparing to unpack .../00-libaec0_1.1.3-1_s390x.deb ... 80s Unpacking libaec0:s390x (1.1.3-1) ... 80s Selecting previously unselected package libblas3:s390x. 80s Preparing to unpack .../01-libblas3_3.12.0-4_s390x.deb ... 80s Unpacking libblas3:s390x (3.12.0-4) ... 80s Selecting previously unselected package libgfortran5:s390x. 80s Preparing to unpack .../02-libgfortran5_14.2.0-12ubuntu1_s390x.deb ... 80s Unpacking libgfortran5:s390x (14.2.0-12ubuntu1) ... 80s Selecting previously unselected package libsz2:s390x. 80s Preparing to unpack .../03-libsz2_1.1.3-1_s390x.deb ... 80s Unpacking libsz2:s390x (1.1.3-1) ... 80s Selecting previously unselected package libhdf5-103-1t64:s390x. 80s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_s390x.deb ... 80s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-5ubuntu1) ... 80s Selecting previously unselected package libhdf5-hl-100t64:s390x. 80s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_s390x.deb ... 80s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-5ubuntu1) ... 80s Selecting previously unselected package liblapack3:s390x. 80s Preparing to unpack .../06-liblapack3_3.12.0-4_s390x.deb ... 80s Unpacking liblapack3:s390x (3.12.0-4) ... 80s Selecting previously unselected package liblbfgsb0:s390x. 80s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 80s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 80s Selecting previously unselected package liblzf1:s390x. 80s Preparing to unpack .../08-liblzf1_3.6-4_s390x.deb ... 80s Unpacking liblzf1:s390x (3.6-4) ... 80s Selecting previously unselected package python3-decorator. 80s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 80s Unpacking python3-decorator (5.1.1-5) ... 80s Selecting previously unselected package python3-numpy. 80s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-12_s390x.deb ... 80s Unpacking python3-numpy (1:1.26.4+ds-12) ... 80s Selecting previously unselected package python3-h5py-serial. 80s Preparing to unpack .../11-python3-h5py-serial_3.11.0-8ubuntu3_s390x.deb ... 80s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 80s Selecting previously unselected package python3-h5py. 80s Preparing to unpack .../12-python3-h5py_3.11.0-8ubuntu3_all.deb ... 80s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 80s Selecting previously unselected package python3-hdf5storage. 80s Preparing to unpack .../13-python3-hdf5storage_0.1.19-2_all.deb ... 80s Unpacking python3-hdf5storage (0.1.19-2) ... 80s Selecting previously unselected package python3-iniconfig. 80s Preparing to unpack .../14-python3-iniconfig_1.1.1-2_all.deb ... 80s Unpacking python3-iniconfig (1.1.1-2) ... 80s Selecting previously unselected package python3-packaging. 80s Preparing to unpack .../15-python3-packaging_24.2-1_all.deb ... 80s Unpacking python3-packaging (24.2-1) ... 80s Selecting previously unselected package python3-pluggy. 80s Preparing to unpack .../16-python3-pluggy_1.5.0-1_all.deb ... 80s Unpacking python3-pluggy (1.5.0-1) ... 80s Selecting previously unselected package python3-pytest. 80s Preparing to unpack .../17-python3-pytest_8.3.3-1_all.deb ... 80s Unpacking python3-pytest (8.3.3-1) ... 80s Selecting previously unselected package python3-scipy. 80s Preparing to unpack .../18-python3-scipy_1.14.1-3ubuntu1_s390x.deb ... 80s Unpacking python3-scipy (1.14.1-3ubuntu1) ... 81s Setting up python3-iniconfig (1.1.1-2) ... 81s Setting up libaec0:s390x (1.1.3-1) ... 81s Setting up python3-decorator (5.1.1-5) ... 81s Setting up libblas3:s390x (3.12.0-4) ... 81s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 81s Setting up python3-packaging (24.2-1) ... 81s Setting up liblzf1:s390x (3.6-4) ... 81s Setting up libgfortran5:s390x (14.2.0-12ubuntu1) ... 81s Setting up python3-pluggy (1.5.0-1) ... 81s Setting up libsz2:s390x (1.1.3-1) ... 81s Setting up liblapack3:s390x (3.12.0-4) ... 81s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 81s Setting up python3-pytest (8.3.3-1) ... 81s Setting up python3-numpy (1:1.26.4+ds-12) ... 84s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-5ubuntu1) ... 84s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 84s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-5ubuntu1) ... 84s Setting up python3-scipy (1.14.1-3ubuntu1) ... 87s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 88s Setting up python3-h5py (3.11.0-8ubuntu3) ... 88s Setting up python3-hdf5storage (0.1.19-2) ... 88s Processing triggers for man-db (2.13.0-1) ... 88s Processing triggers for libc-bin (2.40-4ubuntu1) ... 89s autopkgtest [11:49:56]: test command1: cp -a ./tests $AUTOPKGTEST_TMP; cd $AUTOPKGTEST_TMP; python3 -m pytest -v tests 89s autopkgtest [11:49:56]: test command1: [----------------------- 90s ============================= test session starts ============================== 90s platform linux -- Python 3.12.8, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3 90s cachedir: .pytest_cache 90s rootdir: /tmp/autopkgtest.lkEaVW/autopkgtest_tmp 90s plugins: typeguard-4.4.1 90s collecting ... collected 11 items 90s 90s tests/test_hdf5_filters.py::test_read_filtered_data XFAIL ([NOTRUN] ...) [ 9%] 90s tests/test_hdf5_filters.py::test_write_filtered_data XFAIL ([NOTRUN]...) [ 18%] 90s tests/test_hdf5_filters.py::test_uncompressed_write_filtered_data XFAIL [ 27%] 90s tests/test_matlab_compatibility.py::test_read_from_matlab XFAIL ([NO...) [ 36%] 90s tests/test_matlab_compatibility.py::test_to_matlab_back XFAIL ([NOTR...) [ 45%] 90s tests/test_multi_io.py::test_multi_write PASSED [ 54%] 90s tests/test_multi_io.py::test_multi_read PASSED [ 63%] 90s tests/test_ndarray_O_field.py::test_O_field_compound PASSED [ 72%] 90s tests/test_ndarray_O_field.py::test_object_field_group PASSED [ 81%] 90s tests/test_ndarray_O_field.py::test_O_and_object_field_group PASSED [ 90%] 90s tests/test_string_utf16_conversion.py::test_conv_utf16 XFAIL ([NOTRU...) [100%] 90s 90s =============================== warnings summary =============================== 90s ../../../usr/lib/python3/dist-packages/hdf5storage/utilities.py:44 90s /usr/lib/python3/dist-packages/hdf5storage/utilities.py:44: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 90s from pkg_resources import parse_version 90s 90s tests/test_hdf5_filters.py:215 90s tests/test_hdf5_filters.py:215: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_read_filtered_data will be ignored 90s def test_read_filtered_data(): 90s 90s tests/test_hdf5_filters.py:233 90s tests/test_hdf5_filters.py:233: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_write_filtered_data will be ignored 90s def test_write_filtered_data(): 90s 90s tests/test_hdf5_filters.py:251 90s tests/test_hdf5_filters.py:251: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_uncompressed_write_filtered_data will be ignored 90s def test_uncompressed_write_filtered_data(): 90s 90s tests/test_matlab_compatibility.py:85 90s tests/test_matlab_compatibility.py:85: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_read_from_matlab will be ignored 90s def test_read_from_matlab(): 90s 90s tests/test_matlab_compatibility.py:93 90s tests/test_matlab_compatibility.py:93: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_to_matlab_back will be ignored 90s def test_to_matlab_back(): 90s 90s tests/test_string_utf16_conversion.py:69 90s tests/test_string_utf16_conversion.py:69: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_conv_utf16 will be ignored 90s def test_conv_utf16(): 90s 90s tests/test_write_readback.py:68 90s /tmp/autopkgtest.lkEaVW/autopkgtest_tmp/tests/test_write_readback.py:68: PytestCollectionWarning: cannot collect test class 'TestPythonMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 90s class TestPythonMatlabFormat(object): 90s 90s tests/test_write_readback.py:669 90s /tmp/autopkgtest.lkEaVW/autopkgtest_tmp/tests/test_write_readback.py:669: PytestCollectionWarning: cannot collect test class 'TestPythonFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 90s class TestPythonFormat(TestPythonMatlabFormat): 90s 90s tests/test_write_readback.py:702 90s /tmp/autopkgtest.lkEaVW/autopkgtest_tmp/tests/test_write_readback.py:702: PytestCollectionWarning: cannot collect test class 'TestNoneFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 90s class TestNoneFormat(TestPythonMatlabFormat): 90s 90s tests/test_write_readback.py:741 90s /tmp/autopkgtest.lkEaVW/autopkgtest_tmp/tests/test_write_readback.py:741: PytestCollectionWarning: cannot collect test class 'TestMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 90s class TestMatlabFormat(TestPythonMatlabFormat): 90s 90s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 90s ================== 5 passed, 6 xfailed, 11 warnings in 0.71s =================== 91s autopkgtest [11:49:58]: test command1: -----------------------] 91s command1 PASS 91s autopkgtest [11:49:58]: test command1: - - - - - - - - - - results - - - - - - - - - - 91s autopkgtest [11:49:58]: @@@@@@@@@@@@@@@@@@@@ summary 91s command1 PASS 96s nova [W] Using flock in prodstack6-s390x 96s Creating nova instance adt-plucky-s390x-python-hdf5storage-20250108-114827-juju-7f2275-prod-proposed-migration-environment-15-513f2126-bff6-4ebd-a4e8-c450936a348e from image adt/ubuntu-plucky-s390x-server-20250108.img (UUID 1b305a85-9036-4003-b130-4539b3c95093)... 96s nova [W] Timed out waiting for 37507ae9-21e1-4f8e-b249-c6572a67f219 to get deleted.