0s autopkgtest [16:33:45]: starting date and time: 2024-11-18 16:33:45+0000 0s autopkgtest [16:33:45]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:33:45]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7mmu5u5d/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-28.secgroup --name adt-plucky-s390x-python-h5netcdf-20241118-163345-juju-7f2275-prod-proposed-migration-environment-20-b923b45b-85f7-46a2-99f2-d1141f4ab387 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 117s autopkgtest [16:35:42]: testbed dpkg architecture: s390x 117s autopkgtest [16:35:42]: testbed apt version: 2.9.8 117s autopkgtest [16:35:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 118s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 118s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 119s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 119s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 119s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 119s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.5 kB] 119s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [585 kB] 119s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3760 B] 119s Fetched 1655 kB in 1s (1558 kB/s) 119s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Calculating upgrade... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 122s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 122s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 122s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 123s Reading package lists... 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [16:35:51]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 126s autopkgtest [16:35:51]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 128s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (dsc) [2388 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (tar) [64.6 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (diff) [6016 B] 128s gpgv: Signature made Tue Nov 12 23:12:03 2024 UTC 128s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.4.0-3.dsc: no acceptable signature found 128s autopkgtest [16:35:53]: testing package python-h5netcdf version 1.4.0-3 128s autopkgtest [16:35:53]: build not needed 129s autopkgtest [16:35:54]: test command1: preparing testbed 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s Starting pkgProblemResolver with broken count: 0 135s Starting 2 pkgProblemResolver with broken count: 0 135s Done 135s The following additional packages will be installed: 135s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 135s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 135s libnetcdf19t64 libsz2 python-h5netcdf-doc python3-all python3-cftime 135s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 135s python3-netcdf4 python3-numpy python3-packaging python3-pluggy 135s python3-pytest 135s Suggested packages: 135s python-h5py-doc gcc gfortran python-numpy-doc python3-dev 135s Recommended packages: 135s javascript-common 135s The following NEW packages will be installed: 135s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 135s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 135s liblzf1 libnetcdf19t64 libsz2 python-h5netcdf-doc python3-all python3-cftime 135s python3-h5netcdf python3-h5py python3-h5py-serial python3-iniconfig 135s python3-netcdf4 python3-numpy python3-packaging python3-pluggy 135s python3-pytest 135s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 135s Need to get 14.4 MB/14.4 MB of archives. 135s After this operation, 67.0 MB of additional disk space will be used. 135s Get:1 /tmp/autopkgtest.WvOhIu/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [736 B] 135s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 135s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 135s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 136s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 136s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-4ubuntu3 [1426 kB] 138s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-4ubuntu3 [58.0 kB] 138s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 138s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 138s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 138s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 142s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x liblzf1 s390x 3.6-4 [7020 B] 142s Get:13 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf19t64 s390x 1:4.9.2-6ubuntu1 [496 kB] 142s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python-h5netcdf-doc all 1.4.0-3 [52.8 kB] 142s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.12.6-0ubuntu1 [890 B] 142s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11ubuntu1 [4602 kB] 146s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cftime s390x 1.6.4-1build1 [330 kB] 147s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-h5py-serial s390x 3.11.0-8ubuntu1 [1654 kB] 148s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x python3-h5py all 3.11.0-8ubuntu1 [7982 B] 148s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.2-1 [51.5 kB] 148s Get:21 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-h5netcdf all 1.4.0-3 [47.2 kB] 148s Get:22 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 148s Get:23 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-netcdf4 s390x 1.7.2-1build1 [935 kB] 149s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 149s Get:25 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 150s Fetched 14.4 MB in 15s (941 kB/s) 150s Selecting previously unselected package libaec0:s390x. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55538 files and directories currently installed.) 150s Preparing to unpack .../00-libaec0_1.1.3-1_s390x.deb ... 150s Unpacking libaec0:s390x (1.1.3-1) ... 150s Selecting previously unselected package libblas3:s390x. 150s Preparing to unpack .../01-libblas3_3.12.0-3build2_s390x.deb ... 150s Unpacking libblas3:s390x (3.12.0-3build2) ... 150s Selecting previously unselected package libgfortran5:s390x. 150s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package libsz2:s390x. 150s Preparing to unpack .../03-libsz2_1.1.3-1_s390x.deb ... 150s Unpacking libsz2:s390x (1.1.3-1) ... 150s Selecting previously unselected package libhdf5-103-1t64:s390x. 150s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_s390x.deb ... 150s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 150s Selecting previously unselected package libhdf5-hl-100t64:s390x. 150s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_s390x.deb ... 150s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 150s Selecting previously unselected package libjs-jquery. 150s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 150s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 150s Selecting previously unselected package libjs-underscore. 150s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 150s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 150s Selecting previously unselected package libjs-sphinxdoc. 150s Preparing to unpack .../08-libjs-sphinxdoc_7.4.7-4_all.deb ... 150s Unpacking libjs-sphinxdoc (7.4.7-4) ... 150s Selecting previously unselected package liblapack3:s390x. 150s Preparing to unpack .../09-liblapack3_3.12.0-3build2_s390x.deb ... 150s Unpacking liblapack3:s390x (3.12.0-3build2) ... 150s Selecting previously unselected package liblzf1:s390x. 150s Preparing to unpack .../10-liblzf1_3.6-4_s390x.deb ... 150s Unpacking liblzf1:s390x (3.6-4) ... 150s Selecting previously unselected package libnetcdf19t64:s390x. 150s Preparing to unpack .../11-libnetcdf19t64_1%3a4.9.2-6ubuntu1_s390x.deb ... 150s Unpacking libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ... 150s Selecting previously unselected package python-h5netcdf-doc. 150s Preparing to unpack .../12-python-h5netcdf-doc_1.4.0-3_all.deb ... 150s Unpacking python-h5netcdf-doc (1.4.0-3) ... 150s Selecting previously unselected package python3-all. 150s Preparing to unpack .../13-python3-all_3.12.6-0ubuntu1_s390x.deb ... 150s Unpacking python3-all (3.12.6-0ubuntu1) ... 150s Selecting previously unselected package python3-numpy. 150s Preparing to unpack .../14-python3-numpy_1%3a1.26.4+ds-11ubuntu1_s390x.deb ... 150s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 150s Selecting previously unselected package python3-cftime. 150s Preparing to unpack .../15-python3-cftime_1.6.4-1build1_s390x.deb ... 150s Unpacking python3-cftime (1.6.4-1build1) ... 150s Selecting previously unselected package python3-h5py-serial. 150s Preparing to unpack .../16-python3-h5py-serial_3.11.0-8ubuntu1_s390x.deb ... 150s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 150s Selecting previously unselected package python3-h5py. 150s Preparing to unpack .../17-python3-h5py_3.11.0-8ubuntu1_all.deb ... 150s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 150s Selecting previously unselected package python3-packaging. 150s Preparing to unpack .../18-python3-packaging_24.2-1_all.deb ... 150s Unpacking python3-packaging (24.2-1) ... 150s Selecting previously unselected package python3-h5netcdf. 150s Preparing to unpack .../19-python3-h5netcdf_1.4.0-3_all.deb ... 150s Unpacking python3-h5netcdf (1.4.0-3) ... 150s Selecting previously unselected package python3-iniconfig. 150s Preparing to unpack .../20-python3-iniconfig_1.1.1-2_all.deb ... 150s Unpacking python3-iniconfig (1.1.1-2) ... 150s Selecting previously unselected package python3-netcdf4. 150s Preparing to unpack .../21-python3-netcdf4_1.7.2-1build1_s390x.deb ... 150s Unpacking python3-netcdf4 (1.7.2-1build1) ... 150s Selecting previously unselected package python3-pluggy. 150s Preparing to unpack .../22-python3-pluggy_1.5.0-1_all.deb ... 150s Unpacking python3-pluggy (1.5.0-1) ... 150s Selecting previously unselected package python3-pytest. 150s Preparing to unpack .../23-python3-pytest_8.3.3-1_all.deb ... 150s Unpacking python3-pytest (8.3.3-1) ... 150s Selecting previously unselected package autopkgtest-satdep. 150s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 150s Unpacking autopkgtest-satdep (0) ... 150s Setting up python3-iniconfig (1.1.1-2) ... 150s Setting up python3-all (3.12.6-0ubuntu1) ... 150s Setting up libaec0:s390x (1.1.3-1) ... 150s Setting up libblas3:s390x (3.12.0-3build2) ... 150s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 150s Setting up python3-packaging (24.2-1) ... 150s Setting up liblzf1:s390x (3.6-4) ... 150s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 150s Setting up python3-pluggy (1.5.0-1) ... 151s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 151s Setting up libsz2:s390x (1.1.3-1) ... 151s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 151s Setting up liblapack3:s390x (3.12.0-3build2) ... 151s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 151s Setting up python3-pytest (8.3.3-1) ... 151s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 153s Setting up libjs-sphinxdoc (7.4.7-4) ... 153s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 153s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 153s Setting up libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ... 153s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 153s Setting up python-h5netcdf-doc (1.4.0-3) ... 153s Setting up python3-h5py (3.11.0-8ubuntu1) ... 153s Setting up python3-cftime (1.6.4-1build1) ... 153s Setting up python3-netcdf4 (1.7.2-1build1) ... 153s Setting up python3-h5netcdf (1.4.0-3) ... 153s Setting up autopkgtest-satdep (0) ... 153s Processing triggers for man-db (2.13.0-1) ... 154s Processing triggers for libc-bin (2.40-1ubuntu3) ... 156s (Reading database ... 56995 files and directories currently installed.) 156s Removing autopkgtest-satdep (0) ... 156s autopkgtest [16:36:21]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k "not ros3" ; done 156s autopkgtest [16:36:21]: test command1: [----------------------- 156s Testing with python3.12: 157s ============================= test session starts ============================== 157s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 157s cachedir: .pytest_cache 157s rootdir: /tmp/autopkgtest.WvOhIu/autopkgtest_tmp/tests 157s configfile: pytest.ini 157s plugins: typeguard-4.4.1 157s collecting ... collected 152 items / 1 deselected / 151 selected 157s 157s tests/test_h5netcdf.py::test_write_legacyapi_read_netCDF4 PASSED [ 0%] 157s tests/test_h5netcdf.py::test_roundtrip_h5netcdf_legacyapi PASSED [ 1%] 157s tests/test_h5netcdf.py::test_write_netCDF4_read_legacyapi PASSED [ 1%] 157s tests/test_h5netcdf.py::test_write_h5netcdf_read_legacyapi PASSED [ 2%] 157s tests/test_h5netcdf.py::test_write_h5netcdf_read_netCDF4 PASSED [ 3%] 157s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-True] PASSED [ 3%] 157s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[testfile.nc-False] PASSED [ 4%] 157s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-True] SKIPPED [ 5%] 157s tests/test_h5netcdf.py::test_roundtrip_h5netcdf[hdf5://testfile-False] SKIPPED [ 5%] 157s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[True] PASSED [ 6%] 157s tests/test_h5netcdf.py::test_write_netCDF4_read_h5netcdf[False] PASSED [ 7%] 157s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[True] PASSED [ 7%] 157s tests/test_h5netcdf.py::test_write_legacyapi_read_h5netcdf[False] PASSED [ 8%] 157s tests/test_h5netcdf.py::test_fileobj[True] PASSED [ 9%] 157s tests/test_h5netcdf.py::test_fileobj[False] PASSED [ 9%] 158s tests/test_h5netcdf.py::test_h5py_file_obj[True] PASSED [ 10%] 158s tests/test_h5netcdf.py::test_h5py_file_obj[False] PASSED [ 11%] 158s tests/test_h5netcdf.py::test_repr[testfile.nc] PASSED [ 11%] 158s tests/test_h5netcdf.py::test_repr[hdf5://testfile] SKIPPED (h5pyd pa...) [ 12%] 158s tests/test_h5netcdf.py::test_attrs_api[testfile.nc] PASSED [ 13%] 158s tests/test_h5netcdf.py::test_attrs_api[hdf5://testfile] SKIPPED (h5p...) [ 13%] 158s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[testfile.nc] PASSED [ 14%] 158s tests/test_h5netcdf.py::test_shape_is_tied_to_coordinate[hdf5://testfile] SKIPPED [ 15%] 158s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[testfile.nc] PASSED [ 15%] 158s tests/test_h5netcdf.py::test_optional_netcdf4_attrs[hdf5://testfile] SKIPPED [ 16%] 158s tests/test_h5netcdf.py::test_error_handling[testfile.nc] PASSED [ 17%] 158s tests/test_h5netcdf.py::test_error_handling[hdf5://testfile] SKIPPED [ 17%] 158s tests/test_h5netcdf.py::test_decode_string_error[testfile.nc] PASSED [ 18%] 158s tests/test_h5netcdf.py::test_decode_string_error[hdf5://testfile] SKIPPED [ 19%] 158s tests/test_h5netcdf.py::test_invalid_netcdf4[testfile.nc] PASSED [ 19%] 158s tests/test_h5netcdf.py::test_invalid_netcdf4[hdf5://testfile] SKIPPED [ 20%] 158s tests/test_h5netcdf.py::test_fake_phony_dims[testfile.nc] PASSED [ 21%] 158s tests/test_h5netcdf.py::test_fake_phony_dims[hdf5://testfile] SKIPPED [ 21%] 158s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[testfile.nc] PASSED [ 22%] 158s tests/test_h5netcdf.py::test_invalid_netcdf4_mixed[hdf5://testfile] SKIPPED [ 23%] 158s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[testfile.nc] PASSED [ 23%] 158s tests/test_h5netcdf.py::test_invalid_netcdf_malformed_dimension_scales[hdf5://testfile] SKIPPED [ 24%] 158s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[testfile.nc] PASSED [ 25%] 158s tests/test_h5netcdf.py::test_hierarchical_access_auto_create[hdf5://testfile] SKIPPED [ 25%] 158s tests/test_h5netcdf.py::test_Netcdf4Dimid[testfile.nc] PASSED [ 26%] 158s tests/test_h5netcdf.py::test_Netcdf4Dimid[hdf5://testfile] SKIPPED (...) [ 27%] 158s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[True] PASSED [ 27%] 158s tests/test_h5netcdf.py::test_reading_str_array_from_netCDF4[False] PASSED [ 28%] 158s tests/test_h5netcdf.py::test_nc_properties_new[testfile.nc] PASSED [ 29%] 158s tests/test_h5netcdf.py::test_nc_properties_new[hdf5://testfile] SKIPPED [ 29%] 158s tests/test_h5netcdf.py::test_failed_read_open_and_clean_delete PASSED [ 30%] 158s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[testfile.nc] PASSED [ 31%] 158s tests/test_h5netcdf.py::test_create_variable_matching_saved_dimension[hdf5://testfile] SKIPPED [ 31%] 158s tests/test_h5netcdf.py::test_invalid_netcdf_error[testfile.nc] PASSED [ 32%] 158s tests/test_h5netcdf.py::test_invalid_netcdf_error[hdf5://testfile] SKIPPED [ 33%] 158s tests/test_h5netcdf.py::test_invalid_netcdf_okay[testfile.nc] PASSED [ 33%] 158s tests/test_h5netcdf.py::test_invalid_netcdf_okay[hdf5://testfile] SKIPPED [ 34%] 158s tests/test_h5netcdf.py::test_invalid_netcdf_overwrite_valid PASSED [ 35%] 158s tests/test_h5netcdf.py::test_reopen_file_different_dimension_sizes PASSED [ 35%] 158s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[testfile.nc] PASSED [ 36%] 158s tests/test_h5netcdf.py::test_invalid_then_valid_no_ncproperties[hdf5://testfile] SKIPPED [ 37%] 158s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[testfile.nc] PASSED [ 37%] 158s tests/test_h5netcdf.py::test_creating_and_resizing_unlimited_dimensions[hdf5://testfile] SKIPPED [ 38%] 158s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[testfile.nc] PASSED [ 39%] 158s tests/test_h5netcdf.py::test_creating_variables_with_unlimited_dimensions[hdf5://testfile] SKIPPED [ 39%] 158s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[testfile.nc] PASSED [ 40%] 158s tests/test_h5netcdf.py::test_writing_to_an_unlimited_dimension[hdf5://testfile] SKIPPED [ 41%] 158s tests/test_h5netcdf.py::test_c_api_can_read_unlimited_dimensions PASSED [ 41%] 158s tests/test_h5netcdf.py::test_reading_unlimited_dimensions_created_with_c_api PASSED [ 42%] 158s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[testfile.nc] PASSED [ 43%] 158s tests/test_h5netcdf.py::test_reading_unused_unlimited_dimension[hdf5://testfile] SKIPPED [ 43%] 158s tests/test_h5netcdf.py::test_reading_special_datatype_created_with_c_api PASSED [ 44%] 158s tests/test_h5netcdf.py::test_nc4_non_coord[testfile.nc] PASSED [ 45%] 158s tests/test_h5netcdf.py::test_nc4_non_coord[hdf5://testfile] SKIPPED [ 45%] 158s tests/test_h5netcdf.py::test_overwrite_existing_file PASSED [ 46%] 158s tests/test_h5netcdf.py::test_scales_on_append PASSED [ 47%] 158s tests/test_h5netcdf.py::test_create_attach_scales_netcdf4 PASSED [ 47%] 158s tests/test_h5netcdf.py::test_create_attach_scales_legacyapi PASSED [ 48%] 158s tests/test_h5netcdf.py::test_detach_scale[testfile.nc] PASSED [ 49%] 158s tests/test_h5netcdf.py::test_detach_scale[hdf5://testfile] SKIPPED (...) [ 49%] 158s tests/test_h5netcdf.py::test_is_scale[testfile.nc] PASSED [ 50%] 158s tests/test_h5netcdf.py::test_is_scale[hdf5://testfile] SKIPPED (h5py...) [ 50%] 158s tests/test_h5netcdf.py::test_get_dim_scale_refs[testfile.nc] PASSED [ 51%] 158s tests/test_h5netcdf.py::test_get_dim_scale_refs[hdf5://testfile] SKIPPED [ 52%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix0] PASSED [ 52%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix1] PASSED [ 53%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix2] PASSED [ 54%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix3] PASSED [ 54%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix4] PASSED [ 55%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix5] PASSED [ 56%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix6] PASSED [ 56%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix7] PASSED [ 57%] 158s tests/test_h5netcdf.py::test_dimensions[read_write_matrix8] PASSED [ 58%] 158s tests/test_h5netcdf.py::test_no_circular_references[testfile.nc] PASSED [ 58%] 158s tests/test_h5netcdf.py::test_no_circular_references[hdf5://testfile] SKIPPED [ 59%] 158s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[netCDF4] PASSED [ 60%] 159s tests/test_h5netcdf.py::test_expanded_variables_netcdf4[h5netcdf.legacyapi] PASSED [ 60%] 159s tests/test_h5netcdf.py::test_creation_with_h5netcdf_edit_with_netcdf4 PASSED [ 61%] 159s tests/test_h5netcdf.py::test_track_order_specification PASSED [ 62%] 159s tests/test_h5netcdf.py::test_more_than_7_attr_creation PASSED [ 62%] 159s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[False] PASSED [ 63%] 159s tests/test_h5netcdf.py::test_more_than_7_attr_creation_track_order[True] PASSED [ 64%] 159s tests/test_h5netcdf.py::test_group_names PASSED [ 64%] 159s tests/test_h5netcdf.py::test_legacyapi_endianess[testfile.nc] PASSED [ 65%] 159s tests/test_h5netcdf.py::test_legacyapi_endianess[hdf5://testfile] SKIPPED [ 66%] 159s tests/test_h5netcdf.py::test_bool_slicing_length_one_dim PASSED [ 66%] 159s tests/test_h5netcdf.py::test_fancy_indexing[testfile.nc] PASSED [ 67%] 159s tests/test_h5netcdf.py::test_fancy_indexing[hdf5://testfile] SKIPPED [ 68%] 159s tests/test_h5netcdf.py::test_h5py_chunking PASSED [ 68%] 159s tests/test_h5netcdf.py::test_h5netcdf_chunking PASSED [ 69%] 159s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[testfile.nc] PASSED [ 70%] 159s tests/test_h5netcdf.py::test_create_invalid_netcdf_catch_error[hdf5://testfile] SKIPPED [ 70%] 159s tests/test_h5netcdf.py::test_dimensions_in_parent_groups PASSED [ 71%] 159s tests/test_h5netcdf.py::test_array_attributes PASSED [ 72%] 159s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[True] PASSED [ 72%] 159s tests/test_h5netcdf.py::test_vlen_string_dataset_fillvalue[False] PASSED [ 73%] 159s tests/test_h5netcdf.py::test_user_type_errors_new_api[testfile.nc] PASSED [ 74%] 159s tests/test_h5netcdf.py::test_user_type_errors_new_api[hdf5://testfile] SKIPPED [ 74%] 159s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[testfile.nc] PASSED [ 75%] 159s tests/test_h5netcdf.py::test_user_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 76%] 159s tests/test_h5netcdf.py::test_enum_type_errors_new_api[testfile.nc] PASSED [ 76%] 159s tests/test_h5netcdf.py::test_enum_type_errors_new_api[hdf5://testfile] SKIPPED [ 77%] 159s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[testfile.nc] PASSED [ 78%] 159s tests/test_h5netcdf.py::test_enum_type_errors_legacyapi[hdf5://testfile] SKIPPED [ 78%] 159s tests/test_h5netcdf.py::test_enum_type[testfile.nc] PASSED [ 79%] 159s tests/test_h5netcdf.py::test_enum_type[hdf5://testfile] SKIPPED (h5p...) [ 80%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int] PASSED [ 80%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int8] PASSED [ 81%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-uint16] PASSED [ 82%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-float32] PASSED [ 82%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-netCDF4-int64] PASSED [ 83%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int] PASSED [ 84%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int8] PASSED [ 84%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-uint16] PASSED [ 85%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-float32] PASSED [ 86%] 159s tests/test_h5netcdf.py::test_vltype_creation[testfile.nc-h5netcdf.legacyapi-int64] PASSED [ 86%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int] SKIPPED [ 87%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int8] SKIPPED [ 88%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-uint16] SKIPPED [ 88%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-float32] SKIPPED [ 89%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-netCDF4-int64] SKIPPED [ 90%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int] SKIPPED [ 90%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int8] SKIPPED [ 91%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-uint16] SKIPPED [ 92%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-float32] SKIPPED [ 92%] 159s tests/test_h5netcdf.py::test_vltype_creation[hdf5://testfile-h5netcdf.legacyapi-int64] SKIPPED [ 93%] 159s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-netCDF4] PASSED [ 94%] 159s tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 94%] 159s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 95%] 159s tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%] 159s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 96%] 159s tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 97%] 159s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 98%] 159s tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 98%] 159s tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED [ 99%] 159s tests/test_h5netcdf.py::test_hsds SKIPPED (h5pyd package not available) [100%] 159s 159s ================ 100 passed, 51 skipped, 1 deselected in 2.32s ================= 159s autopkgtest [16:36:24]: test command1: -----------------------] 160s autopkgtest [16:36:25]: test command1: - - - - - - - - - - results - - - - - - - - - - 160s command1 PASS 160s autopkgtest [16:36:25]: test command2: preparing testbed 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Starting pkgProblemResolver with broken count: 0 162s Starting 2 pkgProblemResolver with broken count: 0 162s Done 163s The following NEW packages will be installed: 163s autopkgtest-satdep 163s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 163s Need to get 0 B/736 B of archives. 163s After this operation, 0 B of additional disk space will be used. 163s Get:1 /tmp/autopkgtest.WvOhIu/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [736 B] 163s Selecting previously unselected package autopkgtest-satdep. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56995 files and directories currently installed.) 163s Preparing to unpack .../2-autopkgtest-satdep.deb ... 163s Unpacking autopkgtest-satdep (0) ... 163s Setting up autopkgtest-satdep (0) ... 164s (Reading database ... 56995 files and directories currently installed.) 164s Removing autopkgtest-satdep (0) ... 165s autopkgtest [16:36:30]: test command2: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k ros3 ; done 165s autopkgtest [16:36:30]: test command2: [----------------------- 165s Testing with python3.12: 165s ============================= test session starts ============================== 165s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 165s cachedir: .pytest_cache 165s rootdir: /tmp/autopkgtest.WvOhIu/autopkgtest_tmp/tests 165s configfile: pytest.ini 165s plugins: typeguard-4.4.1 166s collecting ... collected 152 items / 151 deselected / 1 selected 166s 204s tests/test_h5netcdf.py::test_ros3 PASSED [100%] 204s 204s ====================== 1 passed, 151 deselected in 38.76s ====================== 204s autopkgtest [16:37:09]: test command2: -----------------------] 205s command2 PASS 205s autopkgtest [16:37:10]: test command2: - - - - - - - - - - results - - - - - - - - - - 205s autopkgtest [16:37:10]: @@@@@@@@@@@@@@@@@@@@ summary 205s command1 PASS 205s command2 PASS 217s nova [W] Using flock in prodstack6-s390x 217s flock: timeout while waiting to get lock 217s Creating nova instance adt-plucky-s390x-python-h5netcdf-20241118-163345-juju-7f2275-prod-proposed-migration-environment-20-b923b45b-85f7-46a2-99f2-d1141f4ab387 from image adt/ubuntu-plucky-s390x-server-20241118.img (UUID 7dde37bf-57a6-4020-8415-6d0f6608b9a5)...