0s autopkgtest [14:46:50]: starting date and time: 2024-11-13 14:46:50+0000
  0s autopkgtest [14:46:50]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [14:46:50]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7aq6dos4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-gtfparse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-16.secgroup --name adt-plucky-s390x-python-gtfparse-20241113-144650-juju-7f2275-prod-proposed-migration-environment-20-7fc15948-5521-4f51-9fac-c48cad0e2e74 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
107s autopkgtest [14:48:37]: testbed dpkg architecture: s390x
107s autopkgtest [14:48:37]: testbed apt version: 2.9.8
107s autopkgtest [14:48:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
108s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
108s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [962 kB]
109s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB]
109s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
109s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [110 kB]
109s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [639 kB]
109s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB]
109s Fetched 1931 kB in 1s (2372 kB/s)
109s Reading package lists...
111s Reading package lists...
111s Building dependency tree...
111s Reading state information...
111s Calculating upgrade...
111s The following NEW packages will be installed:
111s   python3.13-gdbm
111s The following packages will be upgraded:
111s   libgnutls30t64 libgpgme11t64 libjson-glib-1.0-0 libjson-glib-1.0-common
111s   libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal
111s 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
111s Need to get 1285 kB of archives.
111s After this operation, 103 kB of additional disk space will be used.
111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
112s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
112s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
112s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls30t64 s390x 3.8.8-2ubuntu1 [950 kB]
112s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
112s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
112s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
112s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
112s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-0 s390x 1.10.0+ds-3 [67.5 kB]
112s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libutempter0 s390x 1.2.1-4 [9708 B]
112s Fetched 1285 kB in 1s (1849 kB/s)
112s (Reading database ... 
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(Reading database ... 55510 files and directories currently installed.)
112s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
112s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
112s Setting up python3-minimal (3.12.7-1) ...
113s (Reading database ... 
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(Reading database ... 55510 files and directories currently installed.)
113s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
113s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
113s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
113s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
113s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_s390x.deb ...
113s Unpacking libgnutls30t64:s390x (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
113s Setting up libgnutls30t64:s390x (3.8.8-2ubuntu1) ...
113s Selecting previously unselected package python3.13-gdbm.
113s (Reading database ... 
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(Reading database ... 55510 files and directories currently installed.)
113s Preparing to unpack .../0-python3.13-gdbm_3.13.0-2_s390x.deb ...
113s Unpacking python3.13-gdbm (3.13.0-2) ...
113s Preparing to unpack .../1-python3-gdbm_3.12.7-1_s390x.deb ...
113s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
113s Preparing to unpack .../2-libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
113s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
113s Preparing to unpack .../3-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
113s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
113s Preparing to unpack .../4-libjson-glib-1.0-0_1.10.0+ds-3_s390x.deb ...
113s Unpacking libjson-glib-1.0-0:s390x (1.10.0+ds-3) over (1.10.0+ds-2) ...
113s Preparing to unpack .../5-libutempter0_1.2.1-4_s390x.deb ...
113s Unpacking libutempter0:s390x (1.2.1-4) over (1.2.1-3build1) ...
113s Setting up libutempter0:s390x (1.2.1-4) ...
113s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
113s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
113s Setting up python3.13-gdbm (3.13.0-2) ...
113s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
113s Setting up python3 (3.12.7-1) ...
113s Setting up libjson-glib-1.0-0:s390x (1.10.0+ds-3) ...
113s Setting up python3-gdbm:s390x (3.12.7-1) ...
113s Processing triggers for man-db (2.12.1-3) ...
113s Processing triggers for libc-bin (2.40-1ubuntu3) ...
114s Reading package lists...
114s Building dependency tree...
114s Reading state information...
114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
114s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
114s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
114s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
114s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
115s Reading package lists...
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s Calculating upgrade...
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s autopkgtest [14:48:48]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
119s autopkgtest [14:48:49]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gtfparse
120s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (dsc) [2217 B]
120s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (tar) [14.4 kB]
120s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (diff) [4296 B]
120s gpgv: Signature made Sun Dec  4 16:14:43 2022 UTC
120s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
120s gpgv:                issuer "emollier@emlwks999.eu"
120s gpgv: Can't check signature: No public key
120s dpkg-source: warning: cannot verify inline signature for ./python-gtfparse_1.3.0+ds-1.dsc: no acceptable signature found
120s autopkgtest [14:48:50]: testing package python-gtfparse version 1.3.0+ds-1
121s autopkgtest [14:48:51]: build not needed
121s autopkgtest [14:48:51]: test run-unit-test: preparing testbed
126s Reading package lists...
126s Building dependency tree...
126s Reading state information...
126s Starting pkgProblemResolver with broken count: 0
126s Starting 2 pkgProblemResolver with broken count: 0
126s Done
126s The following additional packages will be installed:
126s   libblas3 libgfortran5 liblapack3 python3-dateutil python3-gtfparse
126s   python3-iniconfig python3-numpy python3-packaging python3-pandas
126s   python3-pandas-lib python3-pluggy python3-pytest python3-six python3-tz
126s Suggested packages:
126s   gcc gfortran python-numpy-doc python3-dev python-pandas-doc
126s   python3-statsmodels
126s Recommended packages:
126s   python3-scipy python3-matplotlib python3-bottleneck python3-numexpr
126s   python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml
126s   python3-tables
126s The following NEW packages will be installed:
126s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 python3-dateutil
126s   python3-gtfparse python3-iniconfig python3-numpy python3-packaging
126s   python3-pandas python3-pandas-lib python3-pluggy python3-pytest python3-six
126s   python3-tz
126s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded.
126s Need to get 16.4 MB/16.4 MB of archives.
126s After this operation, 79.1 MB of additional disk space will be used.
126s Get:1 /tmp/autopkgtest.O3xaul/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B]
126s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
127s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
127s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
127s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB]
127s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-2 [80.3 kB]
127s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
128s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB]
128s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.3+dfsg-5 [4938 kB]
128s Get:10 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.3+dfsg-5 [3112 kB]
129s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-gtfparse all 1.3.0+ds-1 [10.1 kB]
129s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
129s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB]
129s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB]
129s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB]
129s Fetched 16.4 MB in 2s (7157 kB/s)
129s Selecting previously unselected package libblas3:s390x.
129s (Reading database ... 
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(Reading database ... 55517 files and directories currently installed.)
129s Preparing to unpack .../00-libblas3_3.12.0-3build2_s390x.deb ...
129s Unpacking libblas3:s390x (3.12.0-3build2) ...
129s Selecting previously unselected package libgfortran5:s390x.
129s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_s390x.deb ...
129s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ...
129s Selecting previously unselected package liblapack3:s390x.
129s Preparing to unpack .../02-liblapack3_3.12.0-3build2_s390x.deb ...
129s Unpacking liblapack3:s390x (3.12.0-3build2) ...
129s Selecting previously unselected package python3-six.
129s Preparing to unpack .../03-python3-six_1.16.0-7_all.deb ...
129s Unpacking python3-six (1.16.0-7) ...
129s Selecting previously unselected package python3-dateutil.
129s Preparing to unpack .../04-python3-dateutil_2.9.0-2_all.deb ...
129s Unpacking python3-dateutil (2.9.0-2) ...
129s Selecting previously unselected package python3-numpy.
129s Preparing to unpack .../05-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ...
129s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
129s Selecting previously unselected package python3-tz.
129s Preparing to unpack .../06-python3-tz_2024.1-2_all.deb ...
129s Unpacking python3-tz (2024.1-2) ...
129s Selecting previously unselected package python3-pandas-lib:s390x.
129s Preparing to unpack .../07-python3-pandas-lib_2.2.3+dfsg-5_s390x.deb ...
129s Unpacking python3-pandas-lib:s390x (2.2.3+dfsg-5) ...
129s Selecting previously unselected package python3-pandas.
129s Preparing to unpack .../08-python3-pandas_2.2.3+dfsg-5_all.deb ...
129s Unpacking python3-pandas (2.2.3+dfsg-5) ...
129s Selecting previously unselected package python3-gtfparse.
129s Preparing to unpack .../09-python3-gtfparse_1.3.0+ds-1_all.deb ...
129s Unpacking python3-gtfparse (1.3.0+ds-1) ...
129s Selecting previously unselected package python3-iniconfig.
129s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ...
129s Unpacking python3-iniconfig (1.1.1-2) ...
129s Selecting previously unselected package python3-packaging.
129s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ...
129s Unpacking python3-packaging (24.1-1) ...
129s Selecting previously unselected package python3-pluggy.
129s Preparing to unpack .../12-python3-pluggy_1.5.0-1_all.deb ...
129s Unpacking python3-pluggy (1.5.0-1) ...
129s Selecting previously unselected package python3-pytest.
129s Preparing to unpack .../13-python3-pytest_8.3.3-1_all.deb ...
129s Unpacking python3-pytest (8.3.3-1) ...
129s Selecting previously unselected package autopkgtest-satdep.
129s Preparing to unpack .../14-1-autopkgtest-satdep.deb ...
129s Unpacking autopkgtest-satdep (0) ...
129s Setting up python3-iniconfig (1.1.1-2) ...
130s Setting up python3-tz (2024.1-2) ...
130s Setting up python3-six (1.16.0-7) ...
130s Setting up libblas3:s390x (3.12.0-3build2) ...
130s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
130s Setting up python3-packaging (24.1-1) ...
130s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
130s Setting up python3-pluggy (1.5.0-1) ...
130s Setting up python3-dateutil (2.9.0-2) ...
130s Setting up liblapack3:s390x (3.12.0-3build2) ...
130s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
130s Setting up python3-pytest (8.3.3-1) ...
130s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
132s Setting up python3-pandas-lib:s390x (2.2.3+dfsg-5) ...
132s Setting up python3-pandas (2.2.3+dfsg-5) ...
138s Setting up python3-gtfparse (1.3.0+ds-1) ...
138s Setting up autopkgtest-satdep (0) ...
138s Processing triggers for man-db (2.12.1-3) ...
139s Processing triggers for libc-bin (2.40-1ubuntu3) ...
141s (Reading database ... 58407 files and directories currently installed.)
141s Removing autopkgtest-satdep (0) ...
141s autopkgtest [14:49:11]: test run-unit-test: [-----------------------
142s Testing with python3.13 in /tmp/autopkgtest.O3xaul/build.aI6/src:
142s ============================= test session starts ==============================
142s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
142s cachedir: .pytest_cache
142s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
142s plugins: typeguard-4.4.1
142s collecting ... collected 2 items
142s 
142s test/test_create_missing_features.py::test_create_missing_features_identity PASSED [ 50%]
142s test/test_create_missing_features.py::test_create_missing_features PASSED [100%]
142s 
142s ============================== 2 passed in 0.35s ===============================
142s ============================= test session starts ==============================
142s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
142s cachedir: .pytest_cache
142s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
142s plugins: typeguard-4.4.1
143s collecting ... collected 3 items
143s 
143s test/test_expand_attributes.py::test_attributes_in_quotes PASSED         [ 33%]
143s test/test_expand_attributes.py::test_attributes_without_quotes PASSED    [ 66%]
143s test/test_expand_attributes.py::test_optional_attributes PASSED          [100%]
143s 
143s ============================== 3 passed in 0.23s ===============================
143s ============================= test session starts ==============================
143s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
143s cachedir: .pytest_cache
143s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
143s plugins: typeguard-4.4.1
143s collecting ... collected 3 items
143s 
143s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes PASSED [ 33%]
143s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols PASSED [ 66%]
143s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols_other_column PASSED [100%]
143s 
143s ============================== 3 passed in 0.24s ===============================
143s ============================= test session starts ==============================
143s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
143s cachedir: .pytest_cache
143s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
143s plugins: typeguard-4.4.1
144s collecting ... collected 4 items
144s 
144s test/test_parse_gtf_lines.py::test_parse_gtf_lines_with_expand_attributes PASSED [ 25%]
144s test/test_parse_gtf_lines.py::test_parse_gtf_lines_without_expand_attributes PASSED [ 50%]
144s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_many_fields PASSED [ 75%]
144s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_few_fields PASSED [100%]
144s 
144s ============================== 4 passed in 0.32s ===============================
144s Testing with python3.12 in /tmp/autopkgtest.O3xaul/build.aI6/src:
144s ============================= test session starts ==============================
144s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
144s cachedir: .pytest_cache
144s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
144s plugins: typeguard-4.4.1
144s collecting ... collected 2 items
144s 
144s test/test_create_missing_features.py::test_create_missing_features_identity PASSED [ 50%]
144s test/test_create_missing_features.py::test_create_missing_features PASSED [100%]
144s 
144s ============================== 2 passed in 0.29s ===============================
144s ============================= test session starts ==============================
144s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
144s cachedir: .pytest_cache
144s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
144s plugins: typeguard-4.4.1
145s collecting ... collected 3 items
145s 
145s test/test_expand_attributes.py::test_attributes_in_quotes PASSED         [ 33%]
145s test/test_expand_attributes.py::test_attributes_without_quotes PASSED    [ 66%]
145s test/test_expand_attributes.py::test_optional_attributes PASSED          [100%]
145s 
145s ============================== 3 passed in 0.23s ===============================
145s ============================= test session starts ==============================
145s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
145s cachedir: .pytest_cache
145s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
145s plugins: typeguard-4.4.1
145s collecting ... collected 3 items
145s 
145s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes PASSED [ 33%]
145s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols PASSED [ 66%]
145s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols_other_column PASSED [100%]
145s 
145s ============================== 3 passed in 0.24s ===============================
145s ============================= test session starts ==============================
145s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
145s cachedir: .pytest_cache
145s rootdir: /tmp/autopkgtest.O3xaul/build.aI6/src
145s plugins: typeguard-4.4.1
146s collecting ... collected 4 items
146s 
146s test/test_parse_gtf_lines.py::test_parse_gtf_lines_with_expand_attributes PASSED [ 25%]
146s test/test_parse_gtf_lines.py::test_parse_gtf_lines_without_expand_attributes PASSED [ 50%]
146s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_many_fields PASSED [ 75%]
146s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_few_fields PASSED [100%]
146s 
146s ============================== 4 passed in 0.29s ===============================
146s autopkgtest [14:49:16]: test run-unit-test: -----------------------]
147s autopkgtest [14:49:17]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
147s run-unit-test        PASS
147s autopkgtest [14:49:17]: test autodep8-python3: preparing testbed
284s autopkgtest [14:51:34]: testbed dpkg architecture: s390x
284s autopkgtest [14:51:34]: testbed apt version: 2.9.8
284s autopkgtest [14:51:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup
285s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
285s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
285s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
285s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB]
285s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [962 kB]
286s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [110 kB]
286s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [639 kB]
286s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB]
286s Fetched 1931 kB in 1s (2402 kB/s)
286s Reading package lists...
288s Reading package lists...
288s Building dependency tree...
288s Reading state information...
288s Calculating upgrade...
288s The following NEW packages will be installed:
288s   python3.13-gdbm
288s The following packages will be upgraded:
288s   libgnutls30t64 libgpgme11t64 libjson-glib-1.0-0 libjson-glib-1.0-common
288s   libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal
288s 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
288s Need to get 1285 kB of archives.
288s After this operation, 103 kB of additional disk space will be used.
288s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
288s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
288s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
288s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls30t64 s390x 3.8.8-2ubuntu1 [950 kB]
289s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
289s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
289s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
289s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
289s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-0 s390x 1.10.0+ds-3 [67.5 kB]
289s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libutempter0 s390x 1.2.1-4 [9708 B]
289s Fetched 1285 kB in 1s (1625 kB/s)
289s (Reading database ... 
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(Reading database ... 55510 files and directories currently installed.)
289s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
289s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
289s Setting up python3-minimal (3.12.7-1) ...
289s (Reading database ... 
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(Reading database ... 55510 files and directories currently installed.)
289s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
289s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
289s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
289s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
289s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_s390x.deb ...
289s Unpacking libgnutls30t64:s390x (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
289s Setting up libgnutls30t64:s390x (3.8.8-2ubuntu1) ...
289s Selecting previously unselected package python3.13-gdbm.
289s (Reading database ... 
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(Reading database ... 55510 files and directories currently installed.)
289s Preparing to unpack .../0-python3.13-gdbm_3.13.0-2_s390x.deb ...
289s Unpacking python3.13-gdbm (3.13.0-2) ...
289s Preparing to unpack .../1-python3-gdbm_3.12.7-1_s390x.deb ...
289s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
289s Preparing to unpack .../2-libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
289s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
289s Preparing to unpack .../3-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
289s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
289s Preparing to unpack .../4-libjson-glib-1.0-0_1.10.0+ds-3_s390x.deb ...
289s Unpacking libjson-glib-1.0-0:s390x (1.10.0+ds-3) over (1.10.0+ds-2) ...
289s Preparing to unpack .../5-libutempter0_1.2.1-4_s390x.deb ...
289s Unpacking libutempter0:s390x (1.2.1-4) over (1.2.1-3build1) ...
289s Setting up libutempter0:s390x (1.2.1-4) ...
289s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
289s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
289s Setting up python3.13-gdbm (3.13.0-2) ...
289s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
289s Setting up python3 (3.12.7-1) ...
290s Setting up libjson-glib-1.0-0:s390x (1.10.0+ds-3) ...
290s Setting up python3-gdbm:s390x (3.12.7-1) ...
290s Processing triggers for man-db (2.12.1-3) ...
290s Processing triggers for libc-bin (2.40-1ubuntu3) ...
290s Reading package lists...
290s Building dependency tree...
290s Reading state information...
290s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
291s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
291s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
291s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
291s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
292s Reading package lists...
292s Reading package lists...
292s Building dependency tree...
292s Reading state information...
292s Calculating upgrade...
292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
292s Reading package lists...
292s Building dependency tree...
292s Reading state information...
292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
298s Reading package lists...
298s Building dependency tree...
298s Reading state information...
298s Starting pkgProblemResolver with broken count: 0
298s Starting 2 pkgProblemResolver with broken count: 0
298s Done
299s The following additional packages will be installed:
299s   libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib
299s   python3-all python3-dateutil python3-gtfparse python3-numpy python3-pandas
299s   python3-pandas-lib python3-six python3-tz python3.13 python3.13-minimal
299s Suggested packages:
299s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc
299s   python3-statsmodels python3.13-venv python3.13-doc binfmt-support
299s Recommended packages:
299s   python3-scipy python3-matplotlib python3-bottleneck python3-numexpr
299s   python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml
299s   python3-tables
299s The following NEW packages will be installed:
299s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 libpython3.13-minimal
299s   libpython3.13-stdlib python3-all python3-dateutil python3-gtfparse
299s   python3-numpy python3-pandas python3-pandas-lib python3-six python3-tz
299s   python3.13 python3.13-minimal
299s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded.
299s Need to get 21.9 MB/21.9 MB of archives.
299s After this operation, 100 MB of additional disk space will be used.
299s Get:1 /tmp/autopkgtest.O3xaul/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B]
299s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB]
299s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB]
300s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
300s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
300s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
300s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB]
301s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB]
301s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B]
301s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB]
301s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-2 [80.3 kB]
301s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
301s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB]
301s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.3+dfsg-5 [4938 kB]
302s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.3+dfsg-5 [3112 kB]
302s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-gtfparse all 1.3.0+ds-1 [10.1 kB]
302s Fetched 21.9 MB in 3s (7173 kB/s)
302s Selecting previously unselected package libpython3.13-minimal:s390x.
302s (Reading database ... 
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(Reading database ... 55517 files and directories currently installed.)
302s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ...
302s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ...
302s Selecting previously unselected package python3.13-minimal.
302s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ...
302s Unpacking python3.13-minimal (3.13.0-2) ...
302s Selecting previously unselected package libblas3:s390x.
302s Preparing to unpack .../02-libblas3_3.12.0-3build2_s390x.deb ...
302s Unpacking libblas3:s390x (3.12.0-3build2) ...
302s Selecting previously unselected package libgfortran5:s390x.
302s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_s390x.deb ...
302s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ...
302s Selecting previously unselected package liblapack3:s390x.
302s Preparing to unpack .../04-liblapack3_3.12.0-3build2_s390x.deb ...
302s Unpacking liblapack3:s390x (3.12.0-3build2) ...
302s Selecting previously unselected package libpython3.13-stdlib:s390x.
302s Preparing to unpack .../05-libpython3.13-stdlib_3.13.0-2_s390x.deb ...
302s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ...
302s Selecting previously unselected package python3.13.
302s Preparing to unpack .../06-python3.13_3.13.0-2_s390x.deb ...
302s Unpacking python3.13 (3.13.0-2) ...
302s Selecting previously unselected package python3-all.
302s Preparing to unpack .../07-python3-all_3.12.7-1_s390x.deb ...
302s Unpacking python3-all (3.12.7-1) ...
302s Selecting previously unselected package python3-six.
302s Preparing to unpack .../08-python3-six_1.16.0-7_all.deb ...
302s Unpacking python3-six (1.16.0-7) ...
302s Selecting previously unselected package python3-dateutil.
302s Preparing to unpack .../09-python3-dateutil_2.9.0-2_all.deb ...
302s Unpacking python3-dateutil (2.9.0-2) ...
302s Selecting previously unselected package python3-numpy.
302s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ...
302s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
302s Selecting previously unselected package python3-tz.
302s Preparing to unpack .../11-python3-tz_2024.1-2_all.deb ...
302s Unpacking python3-tz (2024.1-2) ...
302s Selecting previously unselected package python3-pandas-lib:s390x.
302s Preparing to unpack .../12-python3-pandas-lib_2.2.3+dfsg-5_s390x.deb ...
302s Unpacking python3-pandas-lib:s390x (2.2.3+dfsg-5) ...
302s Selecting previously unselected package python3-pandas.
302s Preparing to unpack .../13-python3-pandas_2.2.3+dfsg-5_all.deb ...
302s Unpacking python3-pandas (2.2.3+dfsg-5) ...
303s Selecting previously unselected package python3-gtfparse.
303s Preparing to unpack .../14-python3-gtfparse_1.3.0+ds-1_all.deb ...
303s Unpacking python3-gtfparse (1.3.0+ds-1) ...
303s Selecting previously unselected package autopkgtest-satdep.
303s Preparing to unpack .../15-2-autopkgtest-satdep.deb ...
303s Unpacking autopkgtest-satdep (0) ...
303s Setting up python3-tz (2024.1-2) ...
303s Setting up python3-six (1.16.0-7) ...
303s Setting up libpython3.13-minimal:s390x (3.13.0-2) ...
303s Setting up libblas3:s390x (3.12.0-3build2) ...
303s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
303s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
303s Setting up python3.13-minimal (3.13.0-2) ...
304s Setting up python3-dateutil (2.9.0-2) ...
304s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ...
304s Setting up liblapack3:s390x (3.12.0-3build2) ...
304s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
304s Setting up python3.13 (3.13.0-2) ...
305s Setting up python3-all (3.12.7-1) ...
305s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
309s Setting up python3-pandas-lib:s390x (2.2.3+dfsg-5) ...
309s Setting up python3-pandas (2.2.3+dfsg-5) ...
318s Setting up python3-gtfparse (1.3.0+ds-1) ...
318s Setting up autopkgtest-satdep (0) ...
318s Processing triggers for systemd (256.5-2ubuntu4) ...
318s Processing triggers for man-db (2.12.1-3) ...
319s Processing triggers for libc-bin (2.40-1ubuntu3) ...
320s (Reading database ... 58978 files and directories currently installed.)
320s Removing autopkgtest-satdep (0) ...
321s autopkgtest [14:52:11]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import gtfparse; print(gtfparse)" ; done
321s autopkgtest [14:52:11]: test autodep8-python3: [-----------------------
322s Testing with python3.13:
322s Traceback (most recent call last):
322s   File "<string>", line 1, in <module>
322s     import gtfparse; print(gtfparse)
322s     ^^^^^^^^^^^^^^^
322s   File "/usr/lib/python3/dist-packages/gtfparse/__init__.py", line 14, in <module>
322s     from .create_missing_features import create_missing_features
322s   File "/usr/lib/python3/dist-packages/gtfparse/create_missing_features.py", line 16, in <module>
322s     import pandas as pd
322s   File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in <module>
322s     raise ImportError(
322s         "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies)
322s     )
322s ImportError: Unable to import required dependencies:
322s numpy: Error importing numpy: you should not try to import numpy from
322s         its source directory; please exit the numpy source tree, and relaunch
322s         your python interpreter from there.
322s autopkgtest [14:52:12]: test autodep8-python3: -----------------------]
323s autopkgtest [14:52:13]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
323s autodep8-python3     FAIL non-zero exit status 1
323s autopkgtest [14:52:13]: @@@@@@@@@@@@@@@@@@@@ summary
323s run-unit-test        PASS
323s autodep8-python3     FAIL non-zero exit status 1
335s nova [W] Using flock in prodstack6-s390x
335s flock: timeout while waiting to get lock
335s Creating nova instance adt-plucky-s390x-python-gtfparse-20241113-144650-juju-7f2275-prod-proposed-migration-environment-20-7fc15948-5521-4f51-9fac-c48cad0e2e74 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...
335s nova [W] Using flock in prodstack6-s390x
335s Creating nova instance adt-plucky-s390x-python-gtfparse-20241113-144650-juju-7f2275-prod-proposed-migration-environment-20-7fc15948-5521-4f51-9fac-c48cad0e2e74 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...