0s autopkgtest [14:30:07]: starting date and time: 2024-11-13 14:30:07+0000
  0s autopkgtest [14:30:07]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [14:30:07]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ud3qggxu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-freesasa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-1.secgroup --name adt-plucky-s390x-python-freesasa-20241113-143007-juju-7f2275-prod-proposed-migration-environment-20-9ca7aa7c-f516-4b2b-b7d4-b9a5843ccff6 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
110s autopkgtest [14:31:57]: testbed dpkg architecture: s390x
110s autopkgtest [14:31:57]: testbed apt version: 2.9.8
110s autopkgtest [14:31:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup
111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [962 kB]
112s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
112s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB]
112s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
112s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [110 kB]
112s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [639 kB]
112s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB]
112s Fetched 1931 kB in 1s (2382 kB/s)
112s Reading package lists...
114s Reading package lists...
114s Building dependency tree...
114s Reading state information...
114s Calculating upgrade...
114s The following NEW packages will be installed:
114s   python3.13-gdbm
114s The following packages will be upgraded:
114s   libgnutls30t64 libgpgme11t64 libjson-glib-1.0-0 libjson-glib-1.0-common
114s   libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal
114s 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
114s Need to get 1285 kB of archives.
114s After this operation, 103 kB of additional disk space will be used.
114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
115s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls30t64 s390x 3.8.8-2ubuntu1 [950 kB]
115s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
115s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
115s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
115s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
115s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-0 s390x 1.10.0+ds-3 [67.5 kB]
115s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libutempter0 s390x 1.2.1-4 [9708 B]
115s Fetched 1285 kB in 1s (1939 kB/s)
115s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
115s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
115s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
115s Setting up python3-minimal (3.12.7-1) ...
115s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
115s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
116s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
116s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
116s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
116s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_s390x.deb ...
116s Unpacking libgnutls30t64:s390x (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
116s Setting up libgnutls30t64:s390x (3.8.8-2ubuntu1) ...
116s Selecting previously unselected package python3.13-gdbm.
116s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
116s Preparing to unpack .../0-python3.13-gdbm_3.13.0-2_s390x.deb ...
116s Unpacking python3.13-gdbm (3.13.0-2) ...
116s Preparing to unpack .../1-python3-gdbm_3.12.7-1_s390x.deb ...
116s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
116s Preparing to unpack .../2-libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
116s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
116s Preparing to unpack .../3-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
116s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
116s Preparing to unpack .../4-libjson-glib-1.0-0_1.10.0+ds-3_s390x.deb ...
116s Unpacking libjson-glib-1.0-0:s390x (1.10.0+ds-3) over (1.10.0+ds-2) ...
116s Preparing to unpack .../5-libutempter0_1.2.1-4_s390x.deb ...
116s Unpacking libutempter0:s390x (1.2.1-4) over (1.2.1-3build1) ...
116s Setting up libutempter0:s390x (1.2.1-4) ...
116s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
116s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
116s Setting up python3.13-gdbm (3.13.0-2) ...
116s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
116s Setting up python3 (3.12.7-1) ...
116s Setting up libjson-glib-1.0-0:s390x (1.10.0+ds-3) ...
116s Setting up python3-gdbm:s390x (3.12.7-1) ...
116s Processing triggers for man-db (2.12.1-3) ...
116s Processing triggers for libc-bin (2.40-1ubuntu3) ...
117s Reading package lists...
117s Building dependency tree...
117s Reading state information...
117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
117s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
117s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
117s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
117s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
118s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s autopkgtest [14:32:08]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
122s autopkgtest [14:32:09]: @@@@@@@@@@@@@@@@@@@@ apt-source python-freesasa
123s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-freesasa 2.1.0-3build3 (dsc) [2349 B]
123s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-freesasa 2.1.0-3build3 (tar) [26.7 kB]
123s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-freesasa 2.1.0-3build3 (diff) [6300 B]
123s gpgv: Signature made Wed Apr 10 18:31:42 2024 UTC
123s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
123s gpgv: Can't check signature: No public key
123s dpkg-source: warning: cannot verify inline signature for ./python-freesasa_2.1.0-3build3.dsc: no acceptable signature found
123s autopkgtest [14:32:10]: testing package python-freesasa version 2.1.0-3build3
124s autopkgtest [14:32:11]: build not needed
124s autopkgtest [14:32:11]: test upstream-tests: preparing testbed
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
128s Starting pkgProblemResolver with broken count: 0
128s Starting 2 pkgProblemResolver with broken count: 0
128s Done
128s The following additional packages will be installed:
128s   fonts-font-awesome fonts-lato freesasa libjs-jquery libjs-sphinxdoc
128s   libjs-underscore libpython3.13-minimal libpython3.13-stdlib
128s   python-freesasa-doc python3-all python3-freesasa python3-iniconfig
128s   python3-packaging python3-pluggy python3-pytest python3.13
128s   python3.13-minimal sphinx-rtd-theme-common
128s Suggested packages:
128s   python3.13-venv python3.13-doc binfmt-support
128s Recommended packages:
128s   javascript-common
128s The following NEW packages will be installed:
128s   autopkgtest-satdep fonts-font-awesome fonts-lato freesasa libjs-jquery
128s   libjs-sphinxdoc libjs-underscore libpython3.13-minimal libpython3.13-stdlib
128s   python-freesasa-doc python3-all python3-freesasa python3-iniconfig
128s   python3-packaging python3-pluggy python3-pytest python3.13
128s   python3.13-minimal sphinx-rtd-theme-common
128s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
128s Need to get 12.2 MB/12.2 MB of archives.
128s After this operation, 44.9 MB of additional disk space will be used.
128s Get:1 /tmp/autopkgtest.T0DJbv/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [748 B]
128s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-lato all 2.015-1 [2781 kB]
129s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB]
129s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB]
129s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
129s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x freesasa s390x 2.1.2-4 [913 kB]
129s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
129s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
129s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB]
129s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB]
129s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB]
129s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python-freesasa-doc all 2.1.0-3build3 [30.1 kB]
129s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB]
129s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B]
129s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-freesasa s390x 2.1.0-3build3 [172 kB]
129s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
129s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB]
129s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB]
129s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB]
130s Fetched 12.2 MB in 1s (8522 kB/s)
130s Selecting previously unselected package fonts-lato.
130s (Reading database ... 
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(Reading database ... 55517 files and directories currently installed.)
130s Preparing to unpack .../00-fonts-lato_2.015-1_all.deb ...
130s Unpacking fonts-lato (2.015-1) ...
130s Selecting previously unselected package libpython3.13-minimal:s390x.
130s Preparing to unpack .../01-libpython3.13-minimal_3.13.0-2_s390x.deb ...
130s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ...
130s Selecting previously unselected package python3.13-minimal.
130s Preparing to unpack .../02-python3.13-minimal_3.13.0-2_s390x.deb ...
130s Unpacking python3.13-minimal (3.13.0-2) ...
130s Selecting previously unselected package fonts-font-awesome.
130s Preparing to unpack .../03-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
130s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
130s Selecting previously unselected package freesasa.
130s Preparing to unpack .../04-freesasa_2.1.2-4_s390x.deb ...
130s Unpacking freesasa (2.1.2-4) ...
130s Selecting previously unselected package libjs-jquery.
130s Preparing to unpack .../05-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
130s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
130s Selecting previously unselected package libjs-underscore.
130s Preparing to unpack .../06-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
130s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
130s Selecting previously unselected package libjs-sphinxdoc.
130s Preparing to unpack .../07-libjs-sphinxdoc_7.4.7-4_all.deb ...
130s Unpacking libjs-sphinxdoc (7.4.7-4) ...
130s Selecting previously unselected package libpython3.13-stdlib:s390x.
130s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_s390x.deb ...
130s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ...
130s Selecting previously unselected package sphinx-rtd-theme-common.
130s Preparing to unpack .../09-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ...
130s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ...
130s Selecting previously unselected package python-freesasa-doc.
130s Preparing to unpack .../10-python-freesasa-doc_2.1.0-3build3_all.deb ...
130s Unpacking python-freesasa-doc (2.1.0-3build3) ...
130s Selecting previously unselected package python3.13.
130s Preparing to unpack .../11-python3.13_3.13.0-2_s390x.deb ...
130s Unpacking python3.13 (3.13.0-2) ...
130s Selecting previously unselected package python3-all.
130s Preparing to unpack .../12-python3-all_3.12.7-1_s390x.deb ...
130s Unpacking python3-all (3.12.7-1) ...
130s Selecting previously unselected package python3-freesasa.
130s Preparing to unpack .../13-python3-freesasa_2.1.0-3build3_s390x.deb ...
130s Unpacking python3-freesasa (2.1.0-3build3) ...
130s Selecting previously unselected package python3-iniconfig.
130s Preparing to unpack .../14-python3-iniconfig_1.1.1-2_all.deb ...
130s Unpacking python3-iniconfig (1.1.1-2) ...
130s Selecting previously unselected package python3-packaging.
130s Preparing to unpack .../15-python3-packaging_24.1-1_all.deb ...
130s Unpacking python3-packaging (24.1-1) ...
130s Selecting previously unselected package python3-pluggy.
130s Preparing to unpack .../16-python3-pluggy_1.5.0-1_all.deb ...
130s Unpacking python3-pluggy (1.5.0-1) ...
130s Selecting previously unselected package python3-pytest.
130s Preparing to unpack .../17-python3-pytest_8.3.3-1_all.deb ...
130s Unpacking python3-pytest (8.3.3-1) ...
130s Selecting previously unselected package autopkgtest-satdep.
130s Preparing to unpack .../18-1-autopkgtest-satdep.deb ...
130s Unpacking autopkgtest-satdep (0) ...
130s Setting up python3-iniconfig (1.1.1-2) ...
131s Setting up fonts-lato (2.015-1) ...
131s Setting up libpython3.13-minimal:s390x (3.13.0-2) ...
131s Setting up python3-freesasa (2.1.0-3build3) ...
131s Setting up freesasa (2.1.2-4) ...
131s Setting up python3-packaging (24.1-1) ...
131s Setting up python3-pluggy (1.5.0-1) ...
131s Setting up python3.13-minimal (3.13.0-2) ...
132s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
132s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ...
132s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
132s Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ...
132s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
132s Setting up python3.13 (3.13.0-2) ...
133s Setting up python3-pytest (8.3.3-1) ...
134s Setting up python3-all (3.12.7-1) ...
134s Setting up libjs-sphinxdoc (7.4.7-4) ...
134s Setting up python-freesasa-doc (2.1.0-3build3) ...
134s Setting up autopkgtest-satdep (0) ...
134s Processing triggers for man-db (2.12.1-3) ...
135s Processing triggers for systemd (256.5-2ubuntu4) ...
137s (Reading database ... 56654 files and directories currently installed.)
137s Removing autopkgtest-satdep (0) ...
137s autopkgtest [14:32:24]: test upstream-tests: [-----------------------
137s 'test.py' -> '/tmp/autopkgtest.T0DJbv/autopkgtest_tmp/test.py'
137s Running tests with python3.13:
138s ============================= test session starts ==============================
138s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
138s rootdir: /tmp/autopkgtest.T0DJbv/autopkgtest_tmp
138s plugins: typeguard-4.4.1
138s collected 0 items / 1 error
138s 
138s ==================================== ERRORS ====================================
138s ___________________________ ERROR collecting test.py ___________________________
138s ImportError while importing test module '/tmp/autopkgtest.T0DJbv/autopkgtest_tmp/test.py'.
138s Hint: make sure your test modules/packages have valid Python names.
138s Traceback:
138s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
138s     return _bootstrap._gcd_import(name[level:], package, level)
138s test.py:1: in <module>
138s     from freesasa import *
138s E   ModuleNotFoundError: No module named 'freesasa'
138s =========================== short test summary info ============================
138s ERROR test.py
138s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
138s =============================== 1 error in 0.12s ===============================
138s autopkgtest [14:32:25]: test upstream-tests: -----------------------]
138s autopkgtest [14:32:25]: test upstream-tests:  - - - - - - - - - - results - - - - - - - - - -
138s upstream-tests       FAIL non-zero exit status 2
139s autopkgtest [14:32:26]: @@@@@@@@@@@@@@@@@@@@ summary
139s upstream-tests       FAIL non-zero exit status 2
151s nova [W] Using flock in prodstack6-s390x
151s flock: timeout while waiting to get lock
151s Creating nova instance adt-plucky-s390x-python-freesasa-20241113-143007-juju-7f2275-prod-proposed-migration-environment-20-9ca7aa7c-f516-4b2b-b7d4-b9a5843ccff6 from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...