0s autopkgtest [16:40:37]: starting date and time: 2024-11-14 16:40:37+0000
  0s autopkgtest [16:40:37]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [16:40:37]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p3mr2hks/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade python-bx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-15.secgroup --name adt-plucky-s390x-python-bx-20241114-164037-juju-7f2275-prod-proposed-migration-environment-20-7bf66ee1-cff6-4e5d-b42b-33402267379d --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
122s autopkgtest [16:42:39]: testbed dpkg architecture: s390x
122s autopkgtest [16:42:39]: testbed apt version: 2.9.8
122s autopkgtest [16:42:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup
123s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
123s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [951 kB]
124s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
124s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
124s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB]
124s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [117 kB]
124s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [674 kB]
124s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [5020 B]
124s Fetched 1947 kB in 1s (1961 kB/s)
124s Reading package lists...
126s Reading package lists...
126s Building dependency tree...
126s Reading state information...
127s Calculating upgrade...
127s The following packages will be upgraded:
127s   libcap-ng0 pastebinit python3-systemd
127s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
127s Need to get 77.8 kB of archives.
127s After this operation, 123 kB of additional disk space will be used.
127s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libcap-ng0 s390x 0.8.5-3build1 [15.9 kB]
127s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pastebinit all 1.7.1-1 [14.9 kB]
127s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-systemd s390x 235-1build5 [46.9 kB]
127s Fetched 77.8 kB in 0s (233 kB/s)
127s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55511 files and directories currently installed.)
127s Preparing to unpack .../libcap-ng0_0.8.5-3build1_s390x.deb ...
127s Unpacking libcap-ng0:s390x (0.8.5-3build1) over (0.8.5-1) ...
127s Setting up libcap-ng0:s390x (0.8.5-3build1) ...
127s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55511 files and directories currently installed.)
127s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ...
127s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ...
127s Preparing to unpack .../python3-systemd_235-1build5_s390x.deb ...
127s Unpacking python3-systemd (235-1build5) over (235-1build4) ...
128s Setting up pastebinit (1.7.1-1) ...
128s Setting up python3-systemd (235-1build5) ...
128s Processing triggers for man-db (2.12.1-3) ...
128s Processing triggers for libc-bin (2.40-1ubuntu3) ...
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
129s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
129s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
129s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
129s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
130s Reading package lists...
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s autopkgtest [16:42:50]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
133s autopkgtest [16:42:50]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bx
135s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (dsc) [2278 B]
135s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (tar) [1612 kB]
135s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (diff) [13.8 kB]
135s gpgv: Signature made Sun Sep 22 12:26:19 2024 UTC
135s gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
135s gpgv:                issuer "tchet@debian.org"
135s gpgv: Can't check signature: No public key
135s dpkg-source: warning: cannot verify inline signature for ./python-bx_0.13.0-1.dsc: no acceptable signature found
135s autopkgtest [16:42:52]: testing package python-bx version 0.13.0-1
136s autopkgtest [16:42:53]: build not needed
137s autopkgtest [16:42:54]: test pybuild-autopkgtest: preparing testbed
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s Starting pkgProblemResolver with broken count: 0
141s Starting 2 pkgProblemResolver with broken count: 0
141s Done
141s The following additional packages will be installed:
141s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
141s   cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu cython3 debhelper debugedit
141s   dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
141s   g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu
141s   gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8
141s   libblas3 libcc1-0 libdebhelper-perl libexpat1-dev
141s   libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1
141s   libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
141s   libmpc3 libpython3-all-dev libpython3-dev libpython3.12-dev libstdc++-14-dev
141s   libtool libubsan1 m4 po-debconf pybuild-plugin-autopkgtest
141s   pybuild-plugin-pyproject python3-all python3-all-dev python3-build
141s   python3-bx python3-dev python3-iniconfig python3-installer python3-lzo
141s   python3-numpy python3-packaging python3-pluggy python3-pyproject-hooks
141s   python3-pytest python3-pytest-cython python3-toml python3-wheel
141s   python3.12-dev zlib1g-dev
141s Suggested packages:
141s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
141s   cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
141s   bison gdb gcc-doc gdb-s390x-linux-gnu gettext-doc libasprintf-dev
141s   libgettextpo-dev libstdc++-14-doc libtool-doc gfortran | fortran95-compiler
141s   gcj-jdk m4-doc libmail-box-perl python3-pip python3-venv python-build-doc
141s   python-installer-doc gfortran python-numpy-doc
141s Recommended packages:
141s   libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl
141s The following NEW packages will be installed:
141s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
141s   cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu cython3 debhelper
141s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
141s   g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu
141s   gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8
141s   libblas3 libcc1-0 libdebhelper-perl libexpat1-dev
141s   libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1
141s   libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
141s   libmpc3 libpython3-all-dev libpython3-dev libpython3.12-dev libstdc++-14-dev
141s   libtool libubsan1 m4 po-debconf pybuild-plugin-autopkgtest
141s   pybuild-plugin-pyproject python3-all python3-all-dev python3-build
141s   python3-bx python3-dev python3-iniconfig python3-installer python3-lzo
141s   python3-numpy python3-packaging python3-pluggy python3-pyproject-hooks
141s   python3-pytest python3-pytest-cython python3-toml python3-wheel
141s   python3.12-dev zlib1g-dev
141s 0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded.
141s Need to get 73.5 MB/73.5 MB of archives.
141s After this operation, 261 MB of additional disk space will be used.
141s Get:1 /tmp/autopkgtest.b2RtvC/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [844 B]
141s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x m4 s390x 1.4.19-4build1 [256 kB]
142s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x autoconf all 2.72-3 [382 kB]
142s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x autotools-dev all 20220109.1 [44.9 kB]
142s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB]
142s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x autopoint all 0.22.5-2 [616 kB]
142s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
142s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
142s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [9570 kB]
143s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-8ubuntu1 [1026 B]
143s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B]
143s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB]
143s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-8ubuntu1 [50.6 kB]
143s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB]
143s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-8ubuntu1 [30.9 kB]
143s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-8ubuntu1 [2963 kB]
143s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-8ubuntu1 [1184 kB]
143s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-8ubuntu1 [1037 kB]
143s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [18.7 MB]
146s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-8ubuntu1 [518 kB]
146s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B]
146s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B]
146s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-8ubuntu1 [2608 kB]
146s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [11.0 MB]
147s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-8ubuntu1 [19.9 kB]
147s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B]
147s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B]
147s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
147s Get:29 http://ftpmaster.internal/ubuntu plucky/universe s390x cython3 s390x 3.0.11+dfsg-1ubuntu1 [2524 kB]
147s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
147s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libtool all 2.4.7-7build1 [166 kB]
147s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x dh-autoreconf all 20 [16.1 kB]
147s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB]
147s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
147s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x dh-strip-nondeterminism all 1.14.0-1 [5058 B]
147s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x debugedit s390x 1:5.1-1 [49.9 kB]
147s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x dwz s390x 0.15-1build6 [122 kB]
147s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gettext s390x 0.22.5-2 [996 kB]
148s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB]
148s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x po-debconf all 1.0.21+nmu1 [233 kB]
148s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x debhelper all 13.20ubuntu1 [893 kB]
148s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x dh-python all 6.20241024 [112 kB]
148s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
148s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libexpat1-dev s390x 2.6.2-2 [146 kB]
148s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
148s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
148s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
148s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB]
148s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
148s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
148s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.12-dev s390x 3.12.7-3 [5838 kB]
149s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3-dev s390x 3.12.6-0ubuntu1 [10.2 kB]
149s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3-all-dev s390x 3.12.6-0ubuntu1 [918 B]
149s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
149s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB]
149s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
149s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-toml all 0.10.2-1 [16.5 kB]
149s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-wheel all 0.44.0-1 [54.2 kB]
149s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-build all 1.2.2-1 [31.0 kB]
149s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
149s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-pyproject all 6.20241024 [1728 B]
149s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all s390x 3.12.6-0ubuntu1 [890 B]
149s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-dev s390x 3.12.7-3 [505 kB]
149s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dev s390x 3.12.6-0ubuntu1 [26.7 kB]
149s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x python3-all-dev s390x 3.12.6-0ubuntu1 [912 B]
149s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lzo s390x 1.15-2build1 [9846 B]
149s Get:67 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-numpy s390x 1:1.26.4+ds-11ubuntu1 [4602 kB]
150s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-bx s390x 0.13.0-1 [760 kB]
150s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
150s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB]
150s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB]
150s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-cython all 0.3.1-1 [7270 B]
150s Fetched 73.5 MB in 9s (8556 kB/s)
150s Selecting previously unselected package m4.
150s (Reading database ... 
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(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55516 files and directories currently installed.)
150s Preparing to unpack .../00-m4_1.4.19-4build1_s390x.deb ...
150s Unpacking m4 (1.4.19-4build1) ...
150s Selecting previously unselected package autoconf.
150s Preparing to unpack .../01-autoconf_2.72-3_all.deb ...
150s Unpacking autoconf (2.72-3) ...
150s Selecting previously unselected package autotools-dev.
150s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ...
150s Unpacking autotools-dev (20220109.1) ...
150s Selecting previously unselected package automake.
150s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
150s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
150s Selecting previously unselected package autopoint.
150s Preparing to unpack .../04-autopoint_0.22.5-2_all.deb ...
150s Unpacking autopoint (0.22.5-2) ...
150s Selecting previously unselected package libisl23:s390x.
150s Preparing to unpack .../05-libisl23_0.27-1_s390x.deb ...
150s Unpacking libisl23:s390x (0.27-1) ...
150s Selecting previously unselected package libmpc3:s390x.
150s Preparing to unpack .../06-libmpc3_1.3.1-1build2_s390x.deb ...
150s Unpacking libmpc3:s390x (1.3.1-1build2) ...
150s Selecting previously unselected package cpp-14-s390x-linux-gnu.
150s Preparing to unpack .../07-cpp-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ...
150s Unpacking cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ...
150s Selecting previously unselected package cpp-14.
150s Preparing to unpack .../08-cpp-14_14.2.0-8ubuntu1_s390x.deb ...
150s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
150s Selecting previously unselected package cpp-s390x-linux-gnu.
150s Preparing to unpack .../09-cpp-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ...
150s Unpacking cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
150s Selecting previously unselected package cpp.
150s Preparing to unpack .../10-cpp_4%3a14.1.0-2ubuntu1_s390x.deb ...
150s Unpacking cpp (4:14.1.0-2ubuntu1) ...
150s Selecting previously unselected package libcc1-0:s390x.
150s Preparing to unpack .../11-libcc1-0_14.2.0-8ubuntu1_s390x.deb ...
150s Unpacking libcc1-0:s390x (14.2.0-8ubuntu1) ...
150s Selecting previously unselected package libgomp1:s390x.
151s Preparing to unpack .../12-libgomp1_14.2.0-8ubuntu1_s390x.deb ...
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151s Selecting previously unselected package libitm1:s390x.
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151s Selecting previously unselected package libasan8:s390x.
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151s Unpacking libasan8:s390x (14.2.0-8ubuntu1) ...
151s Selecting previously unselected package libubsan1:s390x.
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151s Unpacking libubsan1:s390x (14.2.0-8ubuntu1) ...
151s Selecting previously unselected package libgcc-14-dev:s390x.
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151s Selecting previously unselected package gcc-s390x-linux-gnu.
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151s Unpacking gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
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151s Unpacking gcc (4:14.1.0-2ubuntu1) ...
151s Selecting previously unselected package libstdc++-14-dev:s390x.
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151s Unpacking libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ...
151s Selecting previously unselected package g++-14-s390x-linux-gnu.
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151s Selecting previously unselected package g++-14.
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151s Unpacking g++-14 (14.2.0-8ubuntu1) ...
151s Selecting previously unselected package g++-s390x-linux-gnu.
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151s Selecting previously unselected package g++.
151s Preparing to unpack .../25-g++_4%3a14.1.0-2ubuntu1_s390x.deb ...
151s Unpacking g++ (4:14.1.0-2ubuntu1) ...
151s Selecting previously unselected package build-essential.
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151s Selecting previously unselected package cython3.
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151s Selecting previously unselected package dh-strip-nondeterminism.
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151s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
151s Selecting previously unselected package debugedit.
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151s Unpacking gettext (0.22.5-2) ...
151s Selecting previously unselected package intltool-debian.
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151s Unpacking intltool-debian (0.35.0+20060710.6) ...
151s Selecting previously unselected package po-debconf.
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152s Unpacking debhelper (13.20ubuntu1) ...
152s Selecting previously unselected package dh-python.
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152s Unpacking dh-python (6.20241024) ...
152s Selecting previously unselected package libblas3:s390x.
152s Preparing to unpack .../41-libblas3_3.12.0-3build2_s390x.deb ...
152s Unpacking libblas3:s390x (3.12.0-3build2) ...
152s Selecting previously unselected package libexpat1-dev:s390x.
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152s Unpacking libexpat1-dev:s390x (2.6.2-2) ...
152s Selecting previously unselected package libgfortran5:s390x.
152s Preparing to unpack .../43-libgfortran5_14.2.0-8ubuntu1_s390x.deb ...
152s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ...
152s Selecting previously unselected package libjs-jquery.
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152s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
152s Selecting previously unselected package libjs-underscore.
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152s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
152s Selecting previously unselected package libjs-sphinxdoc.
152s Preparing to unpack .../46-libjs-sphinxdoc_7.4.7-4_all.deb ...
152s Unpacking libjs-sphinxdoc (7.4.7-4) ...
152s Selecting previously unselected package liblapack3:s390x.
152s Preparing to unpack .../47-liblapack3_3.12.0-3build2_s390x.deb ...
152s Unpacking liblapack3:s390x (3.12.0-3build2) ...
152s Selecting previously unselected package zlib1g-dev:s390x.
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152s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
152s Selecting previously unselected package libpython3.12-dev:s390x.
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152s Selecting previously unselected package libpython3-dev:s390x.
152s Preparing to unpack .../50-libpython3-dev_3.12.6-0ubuntu1_s390x.deb ...
152s Unpacking libpython3-dev:s390x (3.12.6-0ubuntu1) ...
152s Selecting previously unselected package libpython3-all-dev:s390x.
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152s Selecting previously unselected package autopkgtest-satdep.
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152s Unpacking autopkgtest-satdep (0) ...
152s Setting up dh-python (6.20241024) ...
152s Setting up python3-iniconfig (1.1.1-2) ...
152s Setting up libarchive-zip-perl (1.68-1) ...
152s Setting up libdebhelper-perl (13.20ubuntu1) ...
152s Setting up m4 (1.4.19-4build1) ...
152s Setting up python3-all (3.12.6-0ubuntu1) ...
152s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ...
152s Setting up python3-wheel (0.44.0-1) ...
153s Setting up autotools-dev (20220109.1) ...
153s Setting up libblas3:s390x (3.12.0-3build2) ...
153s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
153s Setting up python3-packaging (24.1-1) ...
153s Setting up libexpat1-dev:s390x (2.6.2-2) ...
153s Setting up python3-pyproject-hooks (1.2.0-1) ...
153s Setting up libmpc3:s390x (1.3.1-1build2) ...
153s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ...
154s Setting up autopoint (0.22.5-2) ...
154s Setting up python3-toml (0.10.2-1) ...
154s Setting up python3-installer (0.7.0+dfsg1-3) ...
154s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
154s Setting up autoconf (2.72-3) ...
154s Setting up python3-pluggy (1.5.0-1) ...
154s Setting up libubsan1:s390x (14.2.0-8ubuntu1) ...
154s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
154s Setting up dwz (0.15-1build6) ...
154s Setting up libasan8:s390x (14.2.0-8ubuntu1) ...
154s Setting up debugedit (1:5.1-1) ...
154s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
154s Setting up libisl23:s390x (0.27-1) ...
154s Setting up python3-build (1.2.2-1) ...
154s Setting up libcc1-0:s390x (14.2.0-8ubuntu1) ...
154s Setting up python3-lzo:s390x (1.15-2build1) ...
154s Setting up libitm1:s390x (14.2.0-8ubuntu1) ...
154s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
154s Setting up automake (1:1.16.5-1.3ubuntu1) ...
154s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
154s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
154s Setting up liblapack3:s390x (3.12.0-3build2) ...
154s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
154s Setting up gettext (0.22.5-2) ...
154s Setting up pybuild-plugin-pyproject (6.20241024) ...
154s Setting up python3-pytest (8.3.3-1) ...
154s Setting up libpython3.12-dev:s390x (3.12.7-3) ...
154s Setting up intltool-debian (0.35.0+20060710.6) ...
154s Setting up python3.12-dev (3.12.7-3) ...
154s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ...
156s Setting up libjs-sphinxdoc (7.4.7-4) ...
156s Setting up cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ...
156s Setting up cpp-14 (14.2.0-8ubuntu1) ...
157s Setting up dh-strip-nondeterminism (1.14.0-1) ...
157s Setting up libgcc-14-dev:s390x (14.2.0-8ubuntu1) ...
157s Setting up libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ...
157s Setting up python3-bx (0.13.0-1) ...
157s Setting up libpython3-dev:s390x (3.12.6-0ubuntu1) ...
157s Setting up cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
157s Setting up python3-pytest-cython (0.3.1-1) ...
157s Setting up po-debconf (1.0.21+nmu1) ...
157s Setting up gcc-14-s390x-linux-gnu (14.2.0-8ubuntu1) ...
157s Setting up gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
157s Setting up libpython3-all-dev:s390x (3.12.6-0ubuntu1) ...
157s Setting up python3-dev (3.12.6-0ubuntu1) ...
157s Setting up g++-14-s390x-linux-gnu (14.2.0-8ubuntu1) ...
157s Setting up cpp (4:14.1.0-2ubuntu1) ...
157s Setting up python3-all-dev (3.12.6-0ubuntu1) ...
157s Setting up g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
157s Setting up gcc-14 (14.2.0-8ubuntu1) ...
157s Setting up g++-14 (14.2.0-8ubuntu1) ...
157s Setting up libtool (2.4.7-7build1) ...
157s Setting up gcc (4:14.1.0-2ubuntu1) ...
157s Setting up dh-autoreconf (20) ...
157s Setting up g++ (4:14.1.0-2ubuntu1) ...
157s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
157s Setting up build-essential (12.10ubuntu1) ...
157s Setting up debhelper (13.20ubuntu1) ...
157s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
157s Setting up autopkgtest-satdep (0) ...
157s Processing triggers for man-db (2.12.1-3) ...
158s Processing triggers for install-info (7.1.1-1) ...
158s Processing triggers for libc-bin (2.40-1ubuntu3) ...
160s (Reading database ... 60003 files and directories currently installed.)
160s Removing autopkgtest-satdep (0) ...
161s autopkgtest [16:43:18]: test pybuild-autopkgtest: pybuild-autopkgtest
161s autopkgtest [16:43:18]: test pybuild-autopkgtest: [-----------------------
161s find lib -name "*_tests.py" >> debian/pybuild.testfiles
161s pybuild-autopkgtest
161s I: pybuild base:311: cd /tmp/autopkgtest.b2RtvC/autopkgtest_tmp/build; python3.12 -m pytest 
162s ============================= test session starts ==============================
162s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
162s rootdir: /tmp/autopkgtest.b2RtvC/autopkgtest_tmp/build
162s configfile: pytest.ini
162s plugins: typeguard-4.4.1, cython-0.3.1
162s collected 132 items
162s 
162s array_tree_tests.py ......                                               [  4%]
162s bgzf_tests.py .                                                          [  5%]
163s bigwig_tests.py ...........................                              [ 25%]
163s binned_array_tests.py ....                                               [ 28%]
163s bitset_tests.py ..................                                       [ 42%]
163s cdb_tests.py .                                                           [ 43%]
163s cluster_tests.py .............                                           [ 53%]
163s epo_tests.py .....                                                       [ 56%]
163s fasta_tests.py .                                                         [ 57%]
163s fpconst_tests.py .                                                       [ 58%]
164s intersection_tests.py .............                                      [ 68%]
164s interval_index_file_tests.py ...                                         [ 70%]
164s lav_tests.py .                                                           [ 71%]
164s maf_tests.py ........                                                    [ 77%]
165s newick_tests.py ........                                                 [ 83%]
165s nib_tests.py .                                                           [ 84%]
165s phast_tests.py .                                                         [ 84%]
165s pwm_tests.py .                                                           [ 85%]
165s qdna_tests.py .                                                          [ 86%]
165s score_tests.py .....                                                     [ 90%]
165s seq_tests.py ....                                                        [ 93%]
165s sitemask_tests.py ...                                                    [ 95%]
165s transfac_tests.py .                                                      [ 96%]
165s twobit_tests.py ...                                                      [ 98%]
165s wiggle_tests.py ..                                                       [100%]
165s 
165s =============================== warnings summary ===============================
165s ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500
165s   /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead.
165s     self.args, self.args_source = self._decide_args(
165s 
165s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n]
165s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 0.13104 0.105984 -0.00662042 0.143469 0.111045 0.0322849 0.11452 0.0865186 0.055436 0.141388 0.103004 -0.00350213 0.053879 0.10582 0.0983312 -0.0351239 0.10085 0.110439 0.0451646 -0.00949231 0.0487825 0.042197 -0.00328549 -0.00851082 -0.0437525 0.0618735 -0.0315407 -0.00756448 -0.0523631 0.0432315 0.0228745 0.106009 0.0299314 0.0473805\n]
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165s   /tmp/autopkgtest.b2RtvC/autopkgtest_tmp/build/bigwig_tests.py:109: RuntimeWarning: invalid value encountered in divide
165s     assert allclose(sd.sum_data / sd.valid_count, values)
165s 
165s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
165s ======================= 132 passed, 6 warnings in 3.14s ========================
165s autopkgtest [16:43:22]: test pybuild-autopkgtest: -----------------------]
165s pybuild-autopkgtest  PASS
165s autopkgtest [16:43:22]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
166s autopkgtest [16:43:23]: @@@@@@@@@@@@@@@@@@@@ summary
166s pybuild-autopkgtest  PASS
178s nova [W] Using flock in prodstack6-s390x
178s Creating nova instance adt-plucky-s390x-python-bx-20241114-164037-juju-7f2275-prod-proposed-migration-environment-20-7bf66ee1-cff6-4e5d-b42b-33402267379d from image adt/ubuntu-plucky-s390x-server-20241114.img (UUID 41a907ef-1f3c-4685-a0eb-228b0d61c6b5)...