0s autopkgtest [13:07:03]: starting date and time: 2024-11-13 13:07:03+0000 0s autopkgtest [13:07:03]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [13:07:03]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.41nttgy3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-18.secgroup --name adt-plucky-s390x-python-bx-20241113-130703-juju-7f2275-prod-proposed-migration-environment-15-5c31a2f7-087c-4ce2-a279-a50df5659a0d --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 128s autopkgtest [13:09:11]: testbed dpkg architecture: s390x 128s autopkgtest [13:09:11]: testbed apt version: 2.9.8 128s autopkgtest [13:09:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 129s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 129s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 129s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 129s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 129s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 129s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [107 kB] 129s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [641 kB] 129s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB] 129s Fetched 1934 kB in 1s (2276 kB/s) 129s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade... 132s The following NEW packages will be installed: 132s python3.13-gdbm 132s The following packages will be upgraded: 132s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 132s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 252 kB of archives. 132s After this operation, 98.3 kB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 132s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 132s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 132s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 132s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 132s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 133s Fetched 252 kB in 0s (616 kB/s) 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 133s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 133s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 133s Setting up python3-minimal (3.12.7-1) ... 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 133s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 133s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 133s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 133s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 133s Selecting previously unselected package python3.13-gdbm. 133s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 133s Unpacking python3.13-gdbm (3.13.0-2) ... 133s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 133s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 133s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 133s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 133s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 133s Setting up python3.13-gdbm (3.13.0-2) ... 133s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 133s Setting up python3 (3.12.7-1) ... 133s Setting up python3-gdbm:s390x (3.12.7-1) ... 133s Processing triggers for man-db (2.12.1-3) ... 134s Processing triggers for libc-bin (2.40-1ubuntu3) ... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 135s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 135s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 135s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 136s Reading package lists... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Calculating upgrade... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [13:09:22]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 139s autopkgtest [13:09:22]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bx 141s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (dsc) [2278 B] 141s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (tar) [1612 kB] 141s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (diff) [13.8 kB] 141s gpgv: Signature made Sun Sep 22 12:26:19 2024 UTC 141s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 141s gpgv: issuer "tchet@debian.org" 141s gpgv: Can't check signature: No public key 141s dpkg-source: warning: cannot verify inline signature for ./python-bx_0.13.0-1.dsc: no acceptable signature found 141s autopkgtest [13:09:24]: testing package python-bx version 0.13.0-1 142s autopkgtest [13:09:25]: build not needed 143s autopkgtest [13:09:26]: test pybuild-autopkgtest: preparing testbed 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 147s The following additional packages will be installed: 147s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 147s cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu cython3 debhelper debugedit 147s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 147s g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu 147s gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8 147s libblas3 libcc1-0 libdebhelper-perl libexpat1-dev 147s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 147s libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 147s libmpc3 libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 147s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 147s libstdc++-14-dev libtool libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 147s pybuild-plugin-pyproject python3-all python3-all-dev python3-build 147s python3-bx python3-dev python3-iniconfig python3-installer python3-lzo 147s python3-numpy python3-packaging python3-pluggy python3-pyproject-hooks 147s python3-pytest python3-pytest-cython python3-toml python3-wheel 147s python3.12-dev python3.13 python3.13-dev python3.13-minimal zlib1g-dev 147s Suggested packages: 147s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 147s cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex 147s bison gdb gcc-doc gdb-s390x-linux-gnu gettext-doc libasprintf-dev 147s libgettextpo-dev libstdc++-14-doc libtool-doc gfortran | fortran95-compiler 147s gcj-jdk m4-doc libmail-box-perl python3-pip python3-venv python-build-doc 147s python-installer-doc gfortran python-numpy-doc python3.13-venv 147s python3.13-doc binfmt-support 147s Recommended packages: 147s libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl 147s The following NEW packages will be installed: 147s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 147s cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu cython3 debhelper 147s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 147s g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu 147s gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8 147s libblas3 libcc1-0 libdebhelper-perl libexpat1-dev 147s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 147s libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 147s libmpc3 libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 147s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 147s libstdc++-14-dev libtool libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 147s pybuild-plugin-pyproject python3-all python3-all-dev python3-build 147s python3-bx python3-dev python3-iniconfig python3-installer python3-lzo 147s python3-numpy python3-packaging python3-pluggy python3-pyproject-hooks 147s python3-pytest python3-pytest-cython python3-toml python3-wheel 147s python3.12-dev python3.13 python3.13-dev python3.13-minimal zlib1g-dev 147s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 147s Need to get 87.5 MB/87.5 MB of archives. 147s After this operation, 308 MB of additional disk space will be used. 147s Get:1 /tmp/autopkgtest.lB32cb/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [840 B] 147s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 148s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 148s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x m4 s390x 1.4.19-4build1 [256 kB] 148s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x autoconf all 2.72-3 [382 kB] 148s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x autotools-dev all 20220109.1 [44.9 kB] 148s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 148s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x autopoint all 0.22.5-2 [616 kB] 148s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 148s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 148s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [9570 kB] 148s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-8ubuntu1 [1026 B] 148s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B] 148s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB] 148s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-8ubuntu1 [50.6 kB] 148s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 148s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-8ubuntu1 [30.9 kB] 148s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-8ubuntu1 [2963 kB] 148s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-8ubuntu1 [1184 kB] 148s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-8ubuntu1 [1037 kB] 148s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [18.7 MB] 149s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-8ubuntu1 [518 kB] 149s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B] 149s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B] 149s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-8ubuntu1 [2608 kB] 149s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [11.0 MB] 150s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-8ubuntu1 [19.9 kB] 150s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B] 150s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B] 150s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 150s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x cython3 s390x 3.0.11+dfsg-1ubuntu1 [2524 kB] 150s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 150s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtool all 2.4.7-7build1 [166 kB] 150s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x dh-autoreconf all 20 [16.1 kB] 150s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] 150s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 150s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x dh-strip-nondeterminism all 1.14.0-1 [5058 B] 150s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x debugedit s390x 1:5.1-1 [49.9 kB] 150s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x dwz s390x 0.15-1build6 [122 kB] 150s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x gettext s390x 0.22.5-2 [996 kB] 150s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] 150s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x po-debconf all 1.0.21+nmu1 [233 kB] 150s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x debhelper all 13.20ubuntu1 [893 kB] 150s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x dh-python all 6.20241024 [112 kB] 150s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 150s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libexpat1-dev s390x 2.6.2-2 [146 kB] 150s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 150s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 150s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 150s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 150s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 150s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 150s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.12-dev s390x 3.12.7-3 [5838 kB] 150s Get:54 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-dev s390x 3.12.7-1 [10.3 kB] 150s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 151s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13 s390x 3.13.0-2 [2477 kB] 151s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-dev s390x 3.13.0-2 [5586 kB] 151s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-all-dev s390x 3.12.7-1 [918 B] 151s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 151s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB] 151s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 151s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-toml all 0.10.2-1 [16.5 kB] 151s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-wheel all 0.44.0-1 [54.2 kB] 151s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-build all 1.2.2-1 [31.0 kB] 151s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 151s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-pyproject all 6.20241024 [1728 B] 151s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 151s Get:68 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 151s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-dev s390x 3.12.7-3 [505 kB] 151s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-dev s390x 3.12.7-1 [26.7 kB] 151s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-dev s390x 3.13.0-2 [507 kB] 151s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all-dev s390x 3.12.7-1 [914 B] 151s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lzo s390x 1.15-2 [8818 B] 151s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 151s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-bx s390x 0.13.0-1 [760 kB] 151s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 151s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 151s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 151s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest-cython all 0.3.1-1 [7270 B] 152s Fetched 87.5 MB in 4s (21.9 MB/s) 152s Selecting previously unselected package libpython3.13-minimal:s390x. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 152s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 152s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 152s Selecting previously unselected package python3.13-minimal. 152s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 152s Unpacking python3.13-minimal (3.13.0-2) ... 152s Selecting previously unselected package m4. 152s Preparing to unpack .../02-m4_1.4.19-4build1_s390x.deb ... 152s Unpacking m4 (1.4.19-4build1) ... 152s Selecting previously unselected package autoconf. 152s Preparing to unpack .../03-autoconf_2.72-3_all.deb ... 152s Unpacking autoconf (2.72-3) ... 152s Selecting previously unselected package autotools-dev. 152s Preparing to unpack .../04-autotools-dev_20220109.1_all.deb ... 152s Unpacking autotools-dev (20220109.1) ... 152s Selecting previously unselected package automake. 152s Preparing to unpack .../05-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 152s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 152s Selecting previously unselected package autopoint. 152s Preparing to unpack .../06-autopoint_0.22.5-2_all.deb ... 152s Unpacking autopoint (0.22.5-2) ... 152s Selecting previously unselected package libisl23:s390x. 152s Preparing to unpack .../07-libisl23_0.27-1_s390x.deb ... 152s Unpacking libisl23:s390x (0.27-1) ... 152s Selecting previously unselected package libmpc3:s390x. 152s Preparing to unpack .../08-libmpc3_1.3.1-1build2_s390x.deb ... 152s Unpacking libmpc3:s390x (1.3.1-1build2) ... 152s Selecting previously unselected package cpp-14-s390x-linux-gnu. 152s Preparing to unpack .../09-cpp-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package cpp-14. 152s Preparing to unpack .../10-cpp-14_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package cpp-s390x-linux-gnu. 152s Preparing to unpack .../11-cpp-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 152s Unpacking cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 152s Selecting previously unselected package cpp. 152s Preparing to unpack .../12-cpp_4%3a14.1.0-2ubuntu1_s390x.deb ... 152s Unpacking cpp (4:14.1.0-2ubuntu1) ... 152s Selecting previously unselected package libcc1-0:s390x. 152s Preparing to unpack .../13-libcc1-0_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking libcc1-0:s390x (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package libgomp1:s390x. 152s Preparing to unpack .../14-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package libitm1:s390x. 152s Preparing to unpack .../15-libitm1_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking libitm1:s390x (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package libasan8:s390x. 152s Preparing to unpack .../16-libasan8_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking libasan8:s390x (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package libubsan1:s390x. 152s Preparing to unpack .../17-libubsan1_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking libubsan1:s390x (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package libgcc-14-dev:s390x. 152s Preparing to unpack .../18-libgcc-14-dev_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking libgcc-14-dev:s390x (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package gcc-14-s390x-linux-gnu. 152s Preparing to unpack .../19-gcc-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking gcc-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 152s Selecting previously unselected package gcc-14. 152s Preparing to unpack .../20-gcc-14_14.2.0-8ubuntu1_s390x.deb ... 152s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 153s Selecting previously unselected package gcc-s390x-linux-gnu. 153s Preparing to unpack .../21-gcc-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 153s Unpacking gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 153s Selecting previously unselected package gcc. 153s Preparing to unpack .../22-gcc_4%3a14.1.0-2ubuntu1_s390x.deb ... 153s Unpacking gcc (4:14.1.0-2ubuntu1) ... 153s Selecting previously unselected package libstdc++-14-dev:s390x. 153s Preparing to unpack .../23-libstdc++-14-dev_14.2.0-8ubuntu1_s390x.deb ... 153s Unpacking libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ... 153s Selecting previously unselected package g++-14-s390x-linux-gnu. 153s Preparing to unpack .../24-g++-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 153s Unpacking g++-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 153s Selecting previously unselected package g++-14. 153s Preparing to unpack .../25-g++-14_14.2.0-8ubuntu1_s390x.deb ... 153s Unpacking g++-14 (14.2.0-8ubuntu1) ... 153s Selecting previously unselected package g++-s390x-linux-gnu. 153s Preparing to unpack .../26-g++-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 153s Unpacking g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 153s Selecting previously unselected package g++. 153s Preparing to unpack .../27-g++_4%3a14.1.0-2ubuntu1_s390x.deb ... 153s Unpacking g++ (4:14.1.0-2ubuntu1) ... 153s Selecting previously unselected package build-essential. 153s Preparing to unpack .../28-build-essential_12.10ubuntu1_s390x.deb ... 153s Unpacking build-essential (12.10ubuntu1) ... 153s Selecting previously unselected package cython3. 153s Preparing to unpack .../29-cython3_3.0.11+dfsg-1ubuntu1_s390x.deb ... 153s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ... 153s Selecting previously unselected package libdebhelper-perl. 153s Preparing to unpack .../30-libdebhelper-perl_13.20ubuntu1_all.deb ... 153s Unpacking libdebhelper-perl (13.20ubuntu1) ... 153s Selecting previously unselected package libtool. 153s Preparing to unpack .../31-libtool_2.4.7-7build1_all.deb ... 153s Unpacking libtool (2.4.7-7build1) ... 153s Selecting previously unselected package dh-autoreconf. 153s Preparing to unpack .../32-dh-autoreconf_20_all.deb ... 153s Unpacking dh-autoreconf (20) ... 153s Selecting previously unselected package libarchive-zip-perl. 153s Preparing to unpack .../33-libarchive-zip-perl_1.68-1_all.deb ... 153s Unpacking libarchive-zip-perl (1.68-1) ... 153s Selecting previously unselected package libfile-stripnondeterminism-perl. 153s Preparing to unpack .../34-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 153s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 153s Selecting previously unselected package dh-strip-nondeterminism. 153s Preparing to unpack .../35-dh-strip-nondeterminism_1.14.0-1_all.deb ... 153s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 153s Selecting previously unselected package debugedit. 153s Preparing to unpack .../36-debugedit_1%3a5.1-1_s390x.deb ... 153s Unpacking debugedit (1:5.1-1) ... 153s Selecting previously unselected package dwz. 153s Preparing to unpack .../37-dwz_0.15-1build6_s390x.deb ... 153s Unpacking dwz (0.15-1build6) ... 153s Selecting previously unselected package gettext. 153s Preparing to unpack .../38-gettext_0.22.5-2_s390x.deb ... 153s Unpacking gettext (0.22.5-2) ... 153s Selecting previously unselected package intltool-debian. 153s Preparing to unpack .../39-intltool-debian_0.35.0+20060710.6_all.deb ... 153s Unpacking intltool-debian (0.35.0+20060710.6) ... 153s Selecting previously unselected package po-debconf. 153s Preparing to unpack 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previously unselected package libjs-jquery. 153s Preparing to unpack .../46-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 153s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 153s Selecting previously unselected package libjs-underscore. 153s Preparing to unpack .../47-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 153s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 153s Selecting previously unselected package libjs-sphinxdoc. 153s Preparing to unpack .../48-libjs-sphinxdoc_7.4.7-4_all.deb ... 153s Unpacking libjs-sphinxdoc (7.4.7-4) ... 153s Selecting previously unselected package liblapack3:s390x. 153s Preparing to unpack .../49-liblapack3_3.12.0-3build2_s390x.deb ... 153s Unpacking liblapack3:s390x (3.12.0-3build2) ... 153s Selecting previously unselected package zlib1g-dev:s390x. 153s Preparing to unpack .../50-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 153s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 153s Selecting previously unselected package libpython3.12-dev:s390x. 153s Preparing to unpack .../51-libpython3.12-dev_3.12.7-3_s390x.deb ... 153s Unpacking libpython3.12-dev:s390x (3.12.7-3) ... 154s Selecting previously unselected package libpython3-dev:s390x. 154s Preparing to unpack .../52-libpython3-dev_3.12.7-1_s390x.deb ... 154s Unpacking libpython3-dev:s390x (3.12.7-1) ... 154s Selecting previously unselected package libpython3.13-stdlib:s390x. 154s Preparing to unpack .../53-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 154s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 154s Selecting previously unselected package libpython3.13:s390x. 154s Preparing to unpack .../54-libpython3.13_3.13.0-2_s390x.deb ... 154s Unpacking libpython3.13:s390x (3.13.0-2) ... 154s Selecting previously unselected package libpython3.13-dev:s390x. 154s Preparing to unpack .../55-libpython3.13-dev_3.13.0-2_s390x.deb ... 154s Unpacking libpython3.13-dev:s390x (3.13.0-2) ... 154s Selecting previously unselected package libpython3-all-dev:s390x. 154s Preparing to unpack .../56-libpython3-all-dev_3.12.7-1_s390x.deb ... 154s Unpacking libpython3-all-dev:s390x (3.12.7-1) ... 154s Selecting previously unselected package pybuild-plugin-autopkgtest. 154s Preparing to unpack .../57-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 154s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 154s Selecting previously unselected package python3-packaging. 154s Preparing to unpack .../58-python3-packaging_24.1-1_all.deb ... 154s Unpacking python3-packaging (24.1-1) ... 154s Selecting previously unselected package python3-pyproject-hooks. 154s Preparing to unpack .../59-python3-pyproject-hooks_1.2.0-1_all.deb ... 154s Unpacking python3-pyproject-hooks (1.2.0-1) ... 154s Selecting previously unselected package python3-toml. 154s Preparing to unpack .../60-python3-toml_0.10.2-1_all.deb ... 154s Unpacking python3-toml (0.10.2-1) ... 154s Selecting previously unselected package python3-wheel. 154s Preparing to unpack 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Selecting previously unselected package autopkgtest-satdep. 154s Preparing to unpack .../78-1-autopkgtest-satdep.deb ... 154s Unpacking autopkgtest-satdep (0) ... 154s Setting up dh-python (6.20241024) ... 154s Setting up python3-iniconfig (1.1.1-2) ... 155s Setting up libarchive-zip-perl (1.68-1) ... 155s Setting up libdebhelper-perl (13.20ubuntu1) ... 155s Setting up m4 (1.4.19-4build1) ... 155s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 155s Setting up python3-wheel (0.44.0-1) ... 155s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 155s Setting up autotools-dev (20220109.1) ... 155s Setting up libblas3:s390x (3.12.0-3build2) ... 155s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 155s Setting up python3-packaging (24.1-1) ... 155s Setting up libexpat1-dev:s390x (2.6.2-2) ... 155s Setting up python3-pyproject-hooks (1.2.0-1) ... 155s Setting up libmpc3:s390x (1.3.1-1build2) ... 155s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ... 157s Setting up autopoint (0.22.5-2) ... 157s Setting up python3-toml (0.10.2-1) ... 157s Setting up python3-installer (0.7.0+dfsg1-3) ... 157s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 157s Setting up autoconf (2.72-3) ... 157s Setting up python3-pluggy (1.5.0-1) ... 157s Setting up libubsan1:s390x (14.2.0-8ubuntu1) ... 157s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 157s Setting up dwz (0.15-1build6) ... 157s Setting up libasan8:s390x (14.2.0-8ubuntu1) ... 157s Setting up debugedit (1:5.1-1) ... 157s Setting up python3.13-minimal (3.13.0-2) ... 158s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 158s Setting up libisl23:s390x (0.27-1) ... 158s Setting up python3-build (1.2.2-1) ... 158s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 158s Setting up libcc1-0:s390x (14.2.0-8ubuntu1) ... 158s Setting up python3-lzo:s390x (1.15-2) ... 158s Setting up libitm1:s390x (14.2.0-8ubuntu1) ... 158s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 158s Setting up libpython3.13:s390x (3.13.0-2) ... 158s Setting up automake (1:1.16.5-1.3ubuntu1) ... 158s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 158s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 158s Setting up liblapack3:s390x (3.12.0-3build2) ... 158s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 158s Setting up gettext (0.22.5-2) ... 158s Setting up python3.13 (3.13.0-2) ... 159s Setting up pybuild-plugin-pyproject (6.20241024) ... 159s Setting up python3-pytest (8.3.3-1) ... 160s Setting up python3-all (3.12.7-1) ... 160s Setting up libpython3.12-dev:s390x (3.12.7-3) ... 160s Setting up intltool-debian (0.35.0+20060710.6) ... 160s Setting up libpython3.13-dev:s390x (3.13.0-2) ... 160s Setting up python3.12-dev (3.12.7-3) ... 160s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 164s Setting up libjs-sphinxdoc (7.4.7-4) ... 164s Setting up cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 164s Setting up cpp-14 (14.2.0-8ubuntu1) ... 164s Setting up dh-strip-nondeterminism (1.14.0-1) ... 164s Setting up libgcc-14-dev:s390x (14.2.0-8ubuntu1) ... 164s Setting up libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ... 164s Setting up python3-bx (0.13.0-1) ... 165s Setting up libpython3-dev:s390x (3.12.7-1) ... 165s Setting up cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 165s Setting up python3-pytest-cython (0.3.1-1) ... 165s Setting up python3.13-dev (3.13.0-2) ... 165s Setting up po-debconf (1.0.21+nmu1) ... 165s Setting up gcc-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 165s Setting up gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 165s Setting up libpython3-all-dev:s390x (3.12.7-1) ... 165s Setting up python3-dev (3.12.7-1) ... 165s Setting up g++-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 165s Setting up cpp (4:14.1.0-2ubuntu1) ... 165s Setting up python3-all-dev (3.12.7-1) ... 165s Setting up g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 165s Setting up gcc-14 (14.2.0-8ubuntu1) ... 165s Setting up g++-14 (14.2.0-8ubuntu1) ... 165s Setting up libtool (2.4.7-7build1) ... 165s Setting up gcc (4:14.1.0-2ubuntu1) ... 165s Setting up dh-autoreconf (20) ... 165s Setting up g++ (4:14.1.0-2ubuntu1) ... 165s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 165s Setting up build-essential (12.10ubuntu1) ... 165s Setting up debhelper (13.20ubuntu1) ... 165s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 165s Setting up autopkgtest-satdep (0) ... 165s Processing triggers for systemd (256.5-2ubuntu4) ... 165s Processing triggers for man-db (2.12.1-3) ... 165s Processing triggers for install-info (7.1.1-1) ... 165s Processing triggers for libc-bin (2.40-1ubuntu3) ... 168s (Reading database ... 61028 files and directories currently installed.) 168s Removing autopkgtest-satdep (0) ... 169s autopkgtest [13:09:52]: test pybuild-autopkgtest: pybuild-autopkgtest 169s autopkgtest [13:09:52]: test pybuild-autopkgtest: [----------------------- 169s find lib -name "*_tests.py" >> debian/pybuild.testfiles 169s pybuild-autopkgtest 169s I: pybuild base:311: cd /tmp/autopkgtest.lB32cb/autopkgtest_tmp/build; python3.13 -m pytest 170s ============================= test session starts ============================== 170s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 170s rootdir: /tmp/autopkgtest.lB32cb/autopkgtest_tmp/build 170s configfile: pytest.ini 170s plugins: typeguard-4.4.1, cython-0.3.1 170s collected 22 items / 44 errors 170s 170s ==================================== ERRORS ==================================== 170s _____________________ ERROR collecting array_tree_tests.py _____________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/array_tree_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s array_tree_tests.py:11: in 170s from bx.arrays.array_tree import ( 170s E ModuleNotFoundError: No module named 'bx.arrays.array_tree' 170s _____________________ ERROR collecting array_tree_tests.py _____________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/array_tree_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s array_tree_tests.py:11: in 170s from bx.arrays.array_tree import ( 170s E ModuleNotFoundError: No module named 'bx.arrays.array_tree' 170s ________________________ ERROR collecting bgzf_tests.py ________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/bgzf_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s bgzf_tests.py:1: in 170s import bx.misc.bgzf 170s E ModuleNotFoundError: No module named 'bx.misc.bgzf' 170s ________________________ ERROR collecting bgzf_tests.py ________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/bgzf_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s bgzf_tests.py:1: in 170s import bx.misc.bgzf 170s E ModuleNotFoundError: No module named 'bx.misc.bgzf' 170s _______________________ ERROR collecting bigwig_tests.py _______________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/bigwig_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s bigwig_tests.py:4: in 170s import numpy 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s _______________________ ERROR collecting bigwig_tests.py _______________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/bigwig_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s bigwig_tests.py:4: in 170s import numpy 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s ____________________ ERROR collecting binned_array_tests.py ____________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/binned_array_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s binned_array_tests.py:6: in 170s from numpy import ( 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s ____________________ ERROR collecting binned_array_tests.py ____________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/binned_array_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s binned_array_tests.py:6: in 170s from numpy import ( 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s _______________________ ERROR collecting bitset_tests.py _______________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/bitset_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s bitset_tests.py:7: in 170s import bx.bitset 170s E ModuleNotFoundError: No module named 'bx.bitset' 170s _______________________ ERROR collecting bitset_tests.py _______________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/bitset_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s bitset_tests.py:7: in 170s import bx.bitset 170s E ModuleNotFoundError: No module named 'bx.bitset' 170s ________________________ ERROR collecting cdb_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/cdb_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s cdb_tests.py:3: in 170s from bx.misc.cdb import FileCDBDict 170s /usr/lib/python3/dist-packages/bx/misc/cdb.py:4: in 170s from bx.misc.binary_file import ( 170s /usr/lib/python3/dist-packages/bx/misc/binary_file.py:8: in 170s import numpy 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s ________________________ ERROR collecting cdb_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/cdb_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s cdb_tests.py:3: in 170s from bx.misc.cdb import FileCDBDict 170s /usr/lib/python3/dist-packages/bx/misc/cdb.py:4: in 170s from bx.misc.binary_file import ( 170s /usr/lib/python3/dist-packages/bx/misc/binary_file.py:8: in 170s import numpy 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s ______________________ ERROR collecting cluster_tests.py _______________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/cluster_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s cluster_tests.py:3: in 170s from bx.intervals.cluster import ClusterTree 170s /usr/lib/python3/dist-packages/bx/intervals/__init__.py:7: in 170s from bx.intervals.intersection import ( 170s E ModuleNotFoundError: No module named 'bx.intervals.intersection' 170s ______________________ ERROR collecting cluster_tests.py _______________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/cluster_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s cluster_tests.py:3: in 170s from bx.intervals.cluster import ClusterTree 170s /usr/lib/python3/dist-packages/bx/intervals/__init__.py:7: in 170s from bx.intervals.intersection import ( 170s E ModuleNotFoundError: No module named 'bx.intervals.intersection' 170s ________________________ ERROR collecting epo_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/epo_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s epo_tests.py:7: in 170s import numpy as np 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s ________________________ ERROR collecting epo_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/epo_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s epo_tests.py:7: in 170s import numpy as np 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s _______________________ ERROR collecting fasta_tests.py ________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/fasta_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s fasta_tests.py:7: in 170s from bx.seq import fasta 170s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 170s from bx.seq.core import ( 170s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 170s from . import ( 170s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 170s from . import _nib 170s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 170s _______________________ ERROR collecting fasta_tests.py ________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/fasta_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s fasta_tests.py:7: in 170s from bx.seq import fasta 170s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 170s from bx.seq.core import ( 170s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 170s from . import ( 170s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 170s from . import _nib 170s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 170s ____________________ ERROR collecting intersection_tests.py ____________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/intersection_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s intersection_tests.py:10: in 170s from bx.intervals.intersection import ( 170s /usr/lib/python3/dist-packages/bx/intervals/__init__.py:7: in 170s from bx.intervals.intersection import ( 170s E ModuleNotFoundError: No module named 'bx.intervals.intersection' 170s ____________________ ERROR collecting intersection_tests.py ____________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/intersection_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s intersection_tests.py:10: in 170s from bx.intervals.intersection import ( 170s /usr/lib/python3/dist-packages/bx/intervals/__init__.py:7: in 170s from bx.intervals.intersection import ( 170s E ModuleNotFoundError: No module named 'bx.intervals.intersection' 170s ________________________ ERROR collecting lav_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/lav_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s lav_tests.py:7: in 170s import bx.align.lav as lav 170s /usr/lib/python3/dist-packages/bx/align/lav.py:11: in 170s import bx.seq 170s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 170s from bx.seq.core import ( 170s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 170s from . import ( 170s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 170s from . import _nib 170s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 170s ________________________ ERROR collecting lav_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/lav_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s lav_tests.py:7: in 170s import bx.align.lav as lav 170s /usr/lib/python3/dist-packages/bx/align/lav.py:11: in 170s import bx.seq 170s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 170s from bx.seq.core import ( 170s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 170s from . import ( 170s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 170s from . import _nib 170s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 170s ________________________ ERROR collecting nib_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/nib_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s nib_tests.py:7: in 170s from bx.seq import nib 170s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 170s from bx.seq.core import ( 170s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 170s from . import ( 170s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 170s from . import _nib 170s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 170s ________________________ ERROR collecting nib_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/nib_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s nib_tests.py:7: in 170s from bx.seq import nib 170s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 170s from bx.seq.core import ( 170s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 170s from . import ( 170s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 170s from . import _nib 170s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 170s _______________________ ERROR collecting phast_tests.py ________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/phast_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s phast_tests.py:7: in 170s from numpy import ( 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s _______________________ ERROR collecting phast_tests.py ________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/phast_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s phast_tests.py:7: in 170s from numpy import ( 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s ________________________ ERROR collecting pwm_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/pwm_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s pwm_tests.py:4: in 170s import bx.pwm.position_weight_matrix as pwm 170s /usr/lib/python3/dist-packages/bx/pwm/position_weight_matrix.py:6: in 170s from numpy import ( 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 170s ________________________ ERROR collecting pwm_tests.py _________________________ 170s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/pwm_tests.py'. 170s Hint: make sure your test modules/packages have valid Python names. 170s Traceback: 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 170s from . import multiarray 170s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 170s from . import overrides 170s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 170s from numpy.core._multiarray_umath import ( 170s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 170s 170s During handling of the above exception, another exception occurred: 170s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 170s from numpy.__config__ import show as show_config 170s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 170s from numpy.core._multiarray_umath import ( 170s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 170s raise ImportError(msg) 170s E ImportError: 170s E 170s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 170s E 170s E Importing the numpy C-extensions failed. This error can happen for 170s E many reasons, often due to issues with your setup or how NumPy was 170s E installed. 170s E 170s E We have compiled some common reasons and troubleshooting tips at: 170s E 170s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 170s E 170s E Please note and check the following: 170s E 170s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 170s E * The NumPy version is: "1.26.4" 170s E 170s E and make sure that they are the versions you expect. 170s E Please carefully study the documentation linked above for further help. 170s E 170s E Original error was: No module named 'numpy.core._multiarray_umath' 170s 170s The above exception was the direct cause of the following exception: 170s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 170s return _bootstrap._gcd_import(name[level:], package, level) 170s pwm_tests.py:4: in 170s import bx.pwm.position_weight_matrix as pwm 170s /usr/lib/python3/dist-packages/bx/pwm/position_weight_matrix.py:6: in 170s from numpy import ( 170s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 170s raise ImportError(msg) from e 170s E ImportError: Error importing numpy: you should not try to import numpy from 170s E its source directory; please exit the numpy source tree, and relaunch 170s E your python interpreter from there. 171s ________________________ ERROR collecting qdna_tests.py ________________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/qdna_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s qdna_tests.py:7: in 171s from bx.seq import qdna 171s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 171s from bx.seq.core import ( 171s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 171s from . import ( 171s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 171s from . import _nib 171s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 171s ________________________ ERROR collecting qdna_tests.py ________________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/qdna_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s qdna_tests.py:7: in 171s from bx.seq import qdna 171s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 171s from bx.seq.core import ( 171s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 171s from . import ( 171s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 171s from . import _nib 171s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 171s _______________________ ERROR collecting score_tests.py ________________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/score_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 171s from . import multiarray 171s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 171s from . import overrides 171s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 171s from numpy.core._multiarray_umath import ( 171s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 171s 171s During handling of the above exception, another exception occurred: 171s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 171s from numpy.__config__ import show as show_config 171s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 171s from numpy.core._multiarray_umath import ( 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 171s raise ImportError(msg) 171s E ImportError: 171s E 171s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 171s E 171s E Importing the numpy C-extensions failed. This error can happen for 171s E many reasons, often due to issues with your setup or how NumPy was 171s E installed. 171s E 171s E We have compiled some common reasons and troubleshooting tips at: 171s E 171s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 171s E 171s E Please note and check the following: 171s E 171s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 171s E * The NumPy version is: "1.26.4" 171s E 171s E and make sure that they are the versions you expect. 171s E Please carefully study the documentation linked above for further help. 171s E 171s E Original error was: No module named 'numpy.core._multiarray_umath' 171s 171s The above exception was the direct cause of the following exception: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s score_tests.py:8: in 171s from numpy import ( 171s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 171s raise ImportError(msg) from e 171s E ImportError: Error importing numpy: you should not try to import numpy from 171s E its source directory; please exit the numpy source tree, and relaunch 171s E your python interpreter from there. 171s _______________________ ERROR collecting score_tests.py ________________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/score_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 171s from . import multiarray 171s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 171s from . import overrides 171s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 171s from numpy.core._multiarray_umath import ( 171s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 171s 171s During handling of the above exception, another exception occurred: 171s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 171s from numpy.__config__ import show as show_config 171s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 171s from numpy.core._multiarray_umath import ( 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 171s raise ImportError(msg) 171s E ImportError: 171s E 171s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 171s E 171s E Importing the numpy C-extensions failed. This error can happen for 171s E many reasons, often due to issues with your setup or how NumPy was 171s E installed. 171s E 171s E We have compiled some common reasons and troubleshooting tips at: 171s E 171s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 171s E 171s E Please note and check the following: 171s E 171s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 171s E * The NumPy version is: "1.26.4" 171s E 171s E and make sure that they are the versions you expect. 171s E Please carefully study the documentation linked above for further help. 171s E 171s E Original error was: No module named 'numpy.core._multiarray_umath' 171s 171s The above exception was the direct cause of the following exception: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s score_tests.py:8: in 171s from numpy import ( 171s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 171s raise ImportError(msg) from e 171s E ImportError: Error importing numpy: you should not try to import numpy from 171s E its source directory; please exit the numpy source tree, and relaunch 171s E your python interpreter from there. 171s _____________________ ERROR collecting seekbzip2_tests.py ______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/seekbzip2_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s seekbzip2_tests.py:10: in 171s from bx.misc import seekbzip2 171s /usr/lib/python3/dist-packages/bx/misc/seekbzip2.py:7: in 171s from ._seekbzip2 import SeekBzip2 171s E ModuleNotFoundError: No module named 'bx.misc._seekbzip2' 171s _____________________ ERROR collecting seekbzip2_tests.py ______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/seekbzip2_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s seekbzip2_tests.py:10: in 171s from bx.misc import seekbzip2 171s /usr/lib/python3/dist-packages/bx/misc/seekbzip2.py:7: in 171s from ._seekbzip2 import SeekBzip2 171s E ModuleNotFoundError: No module named 'bx.misc._seekbzip2' 171s ________________________ ERROR collecting seq_tests.py _________________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/seq_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s seq_tests.py:7: in 171s import bx.seq 171s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 171s from bx.seq.core import ( 171s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 171s from . import ( 171s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 171s from . import _nib 171s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 171s ________________________ ERROR collecting seq_tests.py _________________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/seq_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s seq_tests.py:7: in 171s import bx.seq 171s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 171s from bx.seq.core import ( 171s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 171s from . import ( 171s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 171s from . import _nib 171s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 171s _____________________ ERROR collecting seqmapping_tests.py _____________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/seqmapping_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 171s from . import multiarray 171s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 171s from . import overrides 171s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 171s from numpy.core._multiarray_umath import ( 171s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 171s 171s During handling of the above exception, another exception occurred: 171s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 171s from numpy.__config__ import show as show_config 171s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 171s from numpy.core._multiarray_umath import ( 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 171s raise ImportError(msg) 171s E ImportError: 171s E 171s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 171s E 171s E Importing the numpy C-extensions failed. This error can happen for 171s E many reasons, often due to issues with your setup or how NumPy was 171s E installed. 171s E 171s E We have compiled some common reasons and troubleshooting tips at: 171s E 171s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 171s E 171s E Please note and check the following: 171s E 171s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 171s E * The NumPy version is: "1.26.4" 171s E 171s E and make sure that they are the versions you expect. 171s E Please carefully study the documentation linked above for further help. 171s E 171s E Original error was: No module named 'numpy.core._multiarray_umath' 171s 171s The above exception was the direct cause of the following exception: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s seqmapping_tests.py:8: in 171s from numpy import ( 171s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 171s raise ImportError(msg) from e 171s E ImportError: Error importing numpy: you should not try to import numpy from 171s E its source directory; please exit the numpy source tree, and relaunch 171s E your python interpreter from there. 171s _____________________ ERROR collecting seqmapping_tests.py _____________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/seqmapping_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 171s from . import multiarray 171s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 171s from . import overrides 171s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 171s from numpy.core._multiarray_umath import ( 171s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 171s 171s During handling of the above exception, another exception occurred: 171s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 171s from numpy.__config__ import show as show_config 171s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 171s from numpy.core._multiarray_umath import ( 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 171s raise ImportError(msg) 171s E ImportError: 171s E 171s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 171s E 171s E Importing the numpy C-extensions failed. This error can happen for 171s E many reasons, often due to issues with your setup or how NumPy was 171s E installed. 171s E 171s E We have compiled some common reasons and troubleshooting tips at: 171s E 171s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 171s E 171s E Please note and check the following: 171s E 171s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 171s E * The NumPy version is: "1.26.4" 171s E 171s E and make sure that they are the versions you expect. 171s E Please carefully study the documentation linked above for further help. 171s E 171s E Original error was: No module named 'numpy.core._multiarray_umath' 171s 171s The above exception was the direct cause of the following exception: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s seqmapping_tests.py:8: in 171s from numpy import ( 171s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 171s raise ImportError(msg) from e 171s E ImportError: Error importing numpy: you should not try to import numpy from 171s E its source directory; please exit the numpy source tree, and relaunch 171s E your python interpreter from there. 171s ______________________ ERROR collecting sitemask_tests.py ______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/sitemask_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s sitemask_tests.py:9: in 171s from bx.align.sitemask import cpg 171s /usr/lib/python3/dist-packages/bx/align/sitemask/cpg.py:6: in 171s from ._cpg import ( 171s E ModuleNotFoundError: No module named 'bx.align.sitemask._cpg' 171s ______________________ ERROR collecting sitemask_tests.py ______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/sitemask_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s sitemask_tests.py:9: in 171s from bx.align.sitemask import cpg 171s /usr/lib/python3/dist-packages/bx/align/sitemask/cpg.py:6: in 171s from ._cpg import ( 171s E ModuleNotFoundError: No module named 'bx.align.sitemask._cpg' 171s ______________________ ERROR collecting transfac_tests.py ______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/transfac_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 171s from . import multiarray 171s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 171s from . import overrides 171s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 171s from numpy.core._multiarray_umath import ( 171s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 171s 171s During handling of the above exception, another exception occurred: 171s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 171s from numpy.__config__ import show as show_config 171s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 171s from numpy.core._multiarray_umath import ( 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 171s raise ImportError(msg) 171s E ImportError: 171s E 171s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 171s E 171s E Importing the numpy C-extensions failed. This error can happen for 171s E many reasons, often due to issues with your setup or how NumPy was 171s E installed. 171s E 171s E We have compiled some common reasons and troubleshooting tips at: 171s E 171s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 171s E 171s E Please note and check the following: 171s E 171s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 171s E * The NumPy version is: "1.26.4" 171s E 171s E and make sure that they are the versions you expect. 171s E Please carefully study the documentation linked above for further help. 171s E 171s E Original error was: No module named 'numpy.core._multiarray_umath' 171s 171s The above exception was the direct cause of the following exception: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s transfac_tests.py:3: in 171s from numpy import allclose 171s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 171s raise ImportError(msg) from e 171s E ImportError: Error importing numpy: you should not try to import numpy from 171s E its source directory; please exit the numpy source tree, and relaunch 171s E your python interpreter from there. 171s ______________________ ERROR collecting transfac_tests.py ______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/transfac_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 171s from . import multiarray 171s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 171s from . import overrides 171s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 171s from numpy.core._multiarray_umath import ( 171s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 171s 171s During handling of the above exception, another exception occurred: 171s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 171s from numpy.__config__ import show as show_config 171s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 171s from numpy.core._multiarray_umath import ( 171s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 171s raise ImportError(msg) 171s E ImportError: 171s E 171s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 171s E 171s E Importing the numpy C-extensions failed. This error can happen for 171s E many reasons, often due to issues with your setup or how NumPy was 171s E installed. 171s E 171s E We have compiled some common reasons and troubleshooting tips at: 171s E 171s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 171s E 171s E Please note and check the following: 171s E 171s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 171s E * The NumPy version is: "1.26.4" 171s E 171s E and make sure that they are the versions you expect. 171s E Please carefully study the documentation linked above for further help. 171s E 171s E Original error was: No module named 'numpy.core._multiarray_umath' 171s 171s The above exception was the direct cause of the following exception: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s transfac_tests.py:3: in 171s from numpy import allclose 171s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 171s raise ImportError(msg) from e 171s E ImportError: Error importing numpy: you should not try to import numpy from 171s E its source directory; please exit the numpy source tree, and relaunch 171s E your python interpreter from there. 171s _______________________ ERROR collecting twobit_tests.py _______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/twobit_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s twobit_tests.py:5: in 171s from bx.seq import twobit 171s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 171s from bx.seq.core import ( 171s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 171s from . import ( 171s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 171s from . import _nib 171s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 171s _______________________ ERROR collecting twobit_tests.py _______________________ 171s ImportError while importing test module '/tmp/autopkgtest.lB32cb/autopkgtest_tmp/build/twobit_tests.py'. 171s Hint: make sure your test modules/packages have valid Python names. 171s Traceback: 171s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 171s return _bootstrap._gcd_import(name[level:], package, level) 171s twobit_tests.py:5: in 171s from bx.seq import twobit 171s /usr/lib/python3/dist-packages/bx/seq/__init__.py:7: in 171s from bx.seq.core import ( 171s /usr/lib/python3/dist-packages/bx/seq/core.py:11: in 171s from . import ( 171s /usr/lib/python3/dist-packages/bx/seq/nib.py:30: in 171s from . import _nib 171s E ImportError: cannot import name '_nib' from partially initialized module 'bx.seq' (most likely due to a circular import) (/usr/lib/python3/dist-packages/bx/seq/__init__.py) 171s =============================== warnings summary =============================== 171s ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500 171s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead. 171s self.args, self.args_source = self._decide_args( 171s 171s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 171s =========================== short test summary info ============================ 171s ERROR array_tree_tests.py 171s ERROR array_tree_tests.py 171s ERROR bgzf_tests.py 171s ERROR bgzf_tests.py 171s ERROR bigwig_tests.py 171s ERROR bigwig_tests.py 171s ERROR binned_array_tests.py 171s ERROR binned_array_tests.py 171s ERROR bitset_tests.py 171s ERROR bitset_tests.py 171s ERROR cdb_tests.py 171s ERROR cdb_tests.py 171s ERROR cluster_tests.py 171s ERROR cluster_tests.py 171s ERROR epo_tests.py 171s ERROR epo_tests.py 171s ERROR fasta_tests.py 171s ERROR fasta_tests.py 171s ERROR intersection_tests.py 171s ERROR intersection_tests.py 171s ERROR lav_tests.py 171s ERROR lav_tests.py 171s ERROR nib_tests.py 171s ERROR nib_tests.py 171s ERROR phast_tests.py 171s ERROR phast_tests.py 171s ERROR pwm_tests.py 171s ERROR pwm_tests.py 171s ERROR qdna_tests.py 171s ERROR qdna_tests.py 171s ERROR score_tests.py 171s ERROR score_tests.py 171s ERROR seekbzip2_tests.py 171s ERROR seekbzip2_tests.py 171s ERROR seq_tests.py 171s ERROR seq_tests.py 171s ERROR seqmapping_tests.py 171s ERROR seqmapping_tests.py 171s ERROR sitemask_tests.py 171s ERROR sitemask_tests.py 171s ERROR transfac_tests.py 171s ERROR transfac_tests.py 171s ERROR twobit_tests.py 171s ERROR twobit_tests.py 171s !!!!!!!!!!!!!!!!!!! Interrupted: 44 errors during collection !!!!!!!!!!!!!!!!!!! 171s ======================== 1 warning, 44 errors in 0.82s ========================= 171s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.lB32cb/autopkgtest_tmp/build; python3.13 -m pytest 171s I: pybuild base:311: cd /tmp/autopkgtest.lB32cb/autopkgtest_tmp/build; python3.12 -m pytest 171s ============================= test session starts ============================== 171s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 171s rootdir: /tmp/autopkgtest.lB32cb/autopkgtest_tmp/build 171s configfile: pytest.ini 171s plugins: typeguard-4.4.1, cython-0.3.1 171s collected 132 items 171s 172s array_tree_tests.py ...... [ 4%] 172s bgzf_tests.py . [ 5%] 172s bigwig_tests.py ........................... [ 25%] 173s binned_array_tests.py .... [ 28%] 173s bitset_tests.py .................. [ 42%] 173s cdb_tests.py . [ 43%] 173s cluster_tests.py ............. [ 53%] 173s epo_tests.py ..... [ 56%] 173s fasta_tests.py . [ 57%] 173s fpconst_tests.py . [ 58%] 173s intersection_tests.py ............. [ 68%] 174s interval_index_file_tests.py ... [ 70%] 174s lav_tests.py . [ 71%] 174s maf_tests.py ........ [ 77%] 174s newick_tests.py ........ [ 83%] 174s nib_tests.py . [ 84%] 174s phast_tests.py . [ 84%] 174s pwm_tests.py . [ 85%] 174s qdna_tests.py . [ 86%] 174s score_tests.py ..... [ 90%] 174s seq_tests.py .... [ 93%] 174s sitemask_tests.py ... [ 95%] 174s transfac_tests.py . [ 96%] 174s twobit_tests.py ... [ 98%] 174s wiggle_tests.py .. [100%] 174s 174s =============================== warnings summary =============================== 174s ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500 174s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead. 174s self.args, self.args_source = self._decide_args( 174s 174s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n] 174s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 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python{version} -p "3.13 3.12" returned exit code 13 174s make: *** [/tmp/7kDFAeSg8M/run:4: pybuild-autopkgtest] Error 25 174s pybuild-autopkgtest: error: /tmp/7kDFAeSg8M/run pybuild-autopkgtest returned exit code 2 174s autopkgtest [13:09:57]: test pybuild-autopkgtest: -----------------------] 175s autopkgtest [13:09:58]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 175s pybuild-autopkgtest FAIL non-zero exit status 25 175s autopkgtest [13:09:58]: @@@@@@@@@@@@@@@@@@@@ summary 175s pybuild-autopkgtest FAIL non-zero exit status 25 188s nova [W] Using flock in prodstack6-s390x 188s Creating nova instance adt-plucky-s390x-python-bx-20241113-130703-juju-7f2275-prod-proposed-migration-environment-15-5c31a2f7-087c-4ce2-a279-a50df5659a0d from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...