0s autopkgtest [13:00:08]: starting date and time: 2024-11-13 13:00:08+0000
  0s autopkgtest [13:00:08]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [13:00:08]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1jlgs3jm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bioframe --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-16.secgroup --name adt-plucky-s390x-python-bioframe-20241113-130008-juju-7f2275-prod-proposed-migration-environment-15-b766d67c-ab4a-42cd-8119-d2dd0c8545bf --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [13:01:51]: testbed dpkg architecture: s390x
104s autopkgtest [13:01:52]: testbed apt version: 2.9.8
104s autopkgtest [13:01:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup
104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
105s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
105s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB]
105s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB]
105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB]
105s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [107 kB]
105s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [641 kB]
105s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB]
105s Fetched 1934 kB in 1s (2311 kB/s)
105s Reading package lists...
107s Reading package lists...
107s Building dependency tree...
107s Reading state information...
108s Calculating upgrade...
108s The following NEW packages will be installed:
108s   python3.13-gdbm
108s The following packages will be upgraded:
108s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
108s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
108s Need to get 252 kB of archives.
108s After this operation, 98.3 kB of additional disk space will be used.
108s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
108s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
108s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
108s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
108s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
108s Fetched 252 kB in 0s (545 kB/s)
108s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
108s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
108s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
108s Setting up python3-minimal (3.12.7-1) ...
109s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
109s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
109s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
109s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
109s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
109s Selecting previously unselected package python3.13-gdbm.
109s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ...
109s Unpacking python3.13-gdbm (3.13.0-2) ...
109s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ...
109s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
109s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
109s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
109s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
109s Setting up python3.13-gdbm (3.13.0-2) ...
109s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
109s Setting up python3 (3.12.7-1) ...
109s Setting up python3-gdbm:s390x (3.12.7-1) ...
109s Processing triggers for man-db (2.12.1-3) ...
109s Processing triggers for libc-bin (2.40-1ubuntu3) ...
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
110s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
110s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
110s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
110s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
111s Reading package lists...
111s Reading package lists...
111s Building dependency tree...
111s Reading state information...
111s Calculating upgrade...
111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s Reading package lists...
112s Building dependency tree...
112s Reading state information...
112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
114s autopkgtest [13:02:02]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
114s autopkgtest [13:02:02]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bioframe
117s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (dsc) [1611 B]
117s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (tar) [816 kB]
117s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (diff) [3464 B]
117s gpgv: Signature made Mon Jun 12 17:55:46 2023 UTC
117s gpgv:                using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
117s gpgv: Can't check signature: No public key
117s dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: no acceptable signature found
117s autopkgtest [13:02:04]: testing package python-bioframe version 0.4.1-1
118s autopkgtest [13:02:06]: build not needed
118s autopkgtest [13:02:06]: test run-unit-test: preparing testbed
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
122s Starting pkgProblemResolver with broken count: 0
122s Starting 2 pkgProblemResolver with broken count: 0
122s Done
122s The following additional packages will be installed:
122s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3
122s   libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3
122s   libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery
122s   libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7
122s   libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
122s   libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3
122s   libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all
122s   python3-appdirs python3-bioframe python3-brotli python3-contourpy
122s   python3-cycler python3-dateutil python3-decorator python3-fonttools
122s   python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4
122s   python3-matplotlib python3-mpmath python3-numpy python3-packaging
122s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
122s   python3-pluggy python3-pytest python3-scipy python3-six python3-sympy
122s   python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk
122s   python3.13 python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data
122s   x11-common
122s Suggested packages:
122s   blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc
122s   python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript
122s   gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
122s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
122s   python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
122s   python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python-pandas-doc
122s   python3-statsmodels python-pil-doc python-scipy-doc texlive-fonts-extra
122s   python-sympy-doc tix python3-tk-dbg python3.13-venv python3.13-doc
122s   binfmt-support
122s Recommended packages:
122s   javascript-common python3-bs4 python3-cssselect python3-html5lib
122s   python3-bottleneck python3-numexpr python3-odf python3-openpyxl
122s   python3-tables python3-olefile g++ | c++-compiler isympy-common
122s The following NEW packages will be installed:
122s   autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono
122s   fonts-lyx libblas3 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
122s   libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8
122s   libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2
122s   libopenjp2-7 libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0
122s   libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2
122s   libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data
122s   python3-all python3-appdirs python3-bioframe python3-brotli
122s   python3-contourpy python3-cycler python3-dateutil python3-decorator
122s   python3-fonttools python3-fs python3-iniconfig python3-kiwisolver
122s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
122s   python3-packaging python3-pandas python3-pandas-lib python3-pil
122s   python3-pil.imagetk python3-pluggy python3-pytest python3-scipy python3-six
122s   python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2
122s   python3.12-tk python3.13 python3.13-minimal python3.13-tk tk8.6-blt2.5
122s   unicode-data x11-common
122s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
122s Need to get 73.2 MB/73.2 MB of archives.
122s After this operation, 311 MB of additional disk space will be used.
122s Get:1 /tmp/autopkgtest.yC4vfY/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B]
123s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB]
123s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB]
123s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.15+dfsg-2 [1034 kB]
123s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
123s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
123s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
123s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB]
123s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB]
123s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
123s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
123s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
123s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
123s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.15-1 [828 kB]
123s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7build1 [662 kB]
123s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x blt s390x 2.5.3+dfsg-7build1 [4840 B]
123s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lyx all 2.4.2.1-1 [171 kB]
123s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
123s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB]
123s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
123s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB]
123s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
123s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB]
123s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB]
123s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB]
123s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
123s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
123s Get:28 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
123s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
124s Get:30 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB]
124s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB]
124s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB]
124s Get:33 http://ftpmaster.internal/ubuntu plucky/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB]
124s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB]
124s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB]
124s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
124s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB]
124s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
124s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB]
124s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB]
124s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxslt1.1 s390x 1.1.39-0exp1ubuntu1 [169 kB]
124s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x python-matplotlib-data all 3.8.3-3 [2928 kB]
124s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB]
124s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B]
124s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x python3-appdirs all 1.4.4-4 [10.9 kB]
124s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB]
124s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-2 [80.3 kB]
124s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB]
124s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu1 [492 kB]
124s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-tk s390x 3.12.7-3 [117 kB]
124s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-tk s390x 3.13.0-2 [107 kB]
124s Get:52 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-tk s390x 3.12.7-1 [9750 B]
124s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pil.imagetk s390x 10.4.0-1ubuntu1 [9314 B]
124s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
124s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-contourpy s390x 1.3.0-2 [195 kB]
124s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cycler all 0.12.1-1 [9716 B]
124s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-brotli s390x 1.1.0-2build2 [376 kB]
124s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB]
124s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.13.1-5 [17.5 MB]
125s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB]
125s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mpmath all 1.3.0-1 [425 kB]
125s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-sympy all 1.13.3-1 [4228 kB]
125s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB]
125s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fs all 2.4.16-4 [91.3 kB]
125s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lxml s390x 5.3.0-1 [1314 kB]
125s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build4 [26.4 kB]
125s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-unicodedata2 s390x 15.1.0+ds-1build1 [367 kB]
125s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x unicode-data all 15.1.0-1 [8878 kB]
125s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-fonttools s390x 4.46.0-1build2 [1453 kB]
125s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-kiwisolver s390x 1.4.7-2 [54.9 kB]
125s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB]
125s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-matplotlib s390x 3.8.3-3 [4554 kB]
125s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.3+dfsg-5 [4938 kB]
125s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.3+dfsg-5 [3112 kB]
126s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-bioframe all 0.4.1-1 [76.1 kB]
126s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
126s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB]
126s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB]
126s Fetched 73.2 MB in 3s (23.5 MB/s)
126s Selecting previously unselected package libpython3.13-minimal:s390x.
126s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55517 files and directories currently installed.)
126s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ...
126s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ...
126s Selecting previously unselected package python3.13-minimal.
126s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ...
126s Unpacking python3.13-minimal (3.13.0-2) ...
126s Selecting previously unselected package libtcl8.6:s390x.
126s Preparing to unpack .../02-libtcl8.6_8.6.15+dfsg-2_s390x.deb ...
126s Unpacking libtcl8.6:s390x (8.6.15+dfsg-2) ...
126s Selecting previously unselected package libfreetype6:s390x.
126s Preparing to unpack .../03-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
126s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
126s Selecting previously unselected package fonts-dejavu-mono.
126s Preparing to unpack .../04-fonts-dejavu-mono_2.37-8_all.deb ...
126s Unpacking fonts-dejavu-mono (2.37-8) ...
126s Selecting previously unselected package fonts-dejavu-core.
126s Preparing to unpack .../05-fonts-dejavu-core_2.37-8_all.deb ...
126s Unpacking fonts-dejavu-core (2.37-8) ...
126s Selecting previously unselected package fontconfig-config.
126s Preparing to unpack .../06-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ...
126s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
126s Selecting previously unselected package libfontconfig1:s390x.
126s Preparing to unpack .../07-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ...
126s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
126s Selecting previously unselected package libxrender1:s390x.
126s Preparing to unpack .../08-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
126s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
126s Selecting previously unselected package libxft2:s390x.
126s Preparing to unpack .../09-libxft2_2.3.6-1build1_s390x.deb ...
126s Unpacking libxft2:s390x (2.3.6-1build1) ...
126s Selecting previously unselected package x11-common.
126s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu3_all.deb ...
126s Unpacking x11-common (1:7.7+23ubuntu3) ...
126s Selecting previously unselected package libxss1:s390x.
126s Preparing to unpack .../11-libxss1_1%3a1.2.3-1build3_s390x.deb ...
126s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
126s Selecting previously unselected package libtk8.6:s390x.
126s Preparing to unpack .../12-libtk8.6_8.6.15-1_s390x.deb ...
126s Unpacking libtk8.6:s390x (8.6.15-1) ...
126s Selecting previously unselected package tk8.6-blt2.5.
126s Preparing to unpack .../13-tk8.6-blt2.5_2.5.3+dfsg-7build1_s390x.deb ...
126s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
126s Selecting previously unselected package blt.
126s Preparing to unpack .../14-blt_2.5.3+dfsg-7build1_s390x.deb ...
126s Unpacking blt (2.5.3+dfsg-7build1) ...
126s Selecting previously unselected package fonts-lyx.
126s Preparing to unpack .../15-fonts-lyx_2.4.2.1-1_all.deb ...
126s Unpacking fonts-lyx (2.4.2.1-1) ...
126s Selecting previously unselected package libblas3:s390x.
126s Preparing to unpack .../16-libblas3_3.12.0-3build2_s390x.deb ...
126s Unpacking libblas3:s390x (3.12.0-3build2) ...
126s Selecting previously unselected package libdeflate0:s390x.
126s Preparing to unpack .../17-libdeflate0_1.22-1_s390x.deb ...
126s Unpacking libdeflate0:s390x (1.22-1) ...
126s Selecting previously unselected package libgfortran5:s390x.
126s Preparing to unpack .../18-libgfortran5_14.2.0-8ubuntu1_s390x.deb ...
126s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ...
126s Selecting previously unselected package libgomp1:s390x.
126s Preparing to unpack .../19-libgomp1_14.2.0-8ubuntu1_s390x.deb ...
126s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ...
126s Selecting previously unselected package libgraphite2-3:s390x.
126s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
126s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
126s Selecting previously unselected package libharfbuzz0b:s390x.
126s Preparing to unpack .../21-libharfbuzz0b_10.0.1-1_s390x.deb ...
126s Unpacking libharfbuzz0b:s390x (10.0.1-1) ...
126s Selecting previously unselected package libimagequant0:s390x.
126s Preparing to unpack .../22-libimagequant0_2.18.0-1build1_s390x.deb ...
126s Unpacking libimagequant0:s390x (2.18.0-1build1) ...
126s Selecting previously unselected package libjpeg-turbo8:s390x.
126s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ...
126s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
126s Selecting previously unselected package libjpeg8:s390x.
126s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_s390x.deb ...
126s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
126s Selecting previously unselected package libjs-jquery.
126s Preparing to unpack .../25-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
126s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
126s Selecting previously unselected package libjs-jquery-ui.
126s Preparing to unpack .../26-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
126s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
126s Selecting previously unselected package liblapack3:s390x.
126s Preparing to unpack .../27-liblapack3_3.12.0-3build2_s390x.deb ...
126s Unpacking liblapack3:s390x (3.12.0-3build2) ...
127s Selecting previously unselected package liblbfgsb0:s390x.
127s Preparing to unpack .../28-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ...
127s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ...
127s Selecting previously unselected package liblcms2-2:s390x.
127s Preparing to unpack .../29-liblcms2-2_2.16-2_s390x.deb ...
127s Unpacking liblcms2-2:s390x (2.16-2) ...
127s Selecting previously unselected package libpython3.13-stdlib:s390x.
127s Preparing to unpack .../30-libpython3.13-stdlib_3.13.0-2_s390x.deb ...
127s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ...
127s Selecting previously unselected package libqhull-r8.0:s390x.
127s Preparing to unpack .../31-libqhull-r8.0_2020.2-6build1_s390x.deb ...
127s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ...
127s Selecting previously unselected package libraqm0:s390x.
127s Preparing to unpack .../32-libraqm0_0.10.1-1build1_s390x.deb ...
127s Unpacking libraqm0:s390x (0.10.1-1build1) ...
127s Selecting previously unselected package libsharpyuv0:s390x.
127s Preparing to unpack .../33-libsharpyuv0_1.4.0-0.1_s390x.deb ...
127s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ...
127s Selecting previously unselected package libjbig0:s390x.
127s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
127s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
127s Selecting previously unselected package libwebp7:s390x.
127s Preparing to unpack .../35-libwebp7_1.4.0-0.1_s390x.deb ...
127s Unpacking libwebp7:s390x (1.4.0-0.1) ...
127s Selecting previously unselected package libtiff6:s390x.
127s Preparing to unpack .../36-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
127s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
127s Selecting previously unselected package libwebpdemux2:s390x.
127s Preparing to unpack .../37-libwebpdemux2_1.4.0-0.1_s390x.deb ...
127s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ...
127s Selecting previously unselected package libwebpmux3:s390x.
127s Preparing to unpack .../38-libwebpmux3_1.4.0-0.1_s390x.deb ...
127s Unpacking libwebpmux3:s390x (1.4.0-0.1) ...
127s Selecting previously unselected package libxslt1.1:s390x.
127s Preparing to unpack .../39-libxslt1.1_1.1.39-0exp1ubuntu1_s390x.deb ...
127s Unpacking libxslt1.1:s390x (1.1.39-0exp1ubuntu1) ...
127s Selecting previously unselected package python-matplotlib-data.
127s Preparing to unpack .../40-python-matplotlib-data_3.8.3-3_all.deb ...
127s Unpacking python-matplotlib-data (3.8.3-3) ...
127s Selecting previously unselected package python3.13.
127s Preparing to unpack .../41-python3.13_3.13.0-2_s390x.deb ...
127s Unpacking python3.13 (3.13.0-2) ...
127s Selecting previously unselected package python3-all.
127s Preparing to unpack .../42-python3-all_3.12.7-1_s390x.deb ...
127s Unpacking python3-all (3.12.7-1) ...
127s Selecting previously unselected package python3-appdirs.
127s Preparing to unpack .../43-python3-appdirs_1.4.4-4_all.deb ...
127s Unpacking python3-appdirs (1.4.4-4) ...
127s Selecting previously unselected package python3-six.
127s Preparing to unpack .../44-python3-six_1.16.0-7_all.deb ...
127s Unpacking python3-six (1.16.0-7) ...
127s Selecting previously unselected package python3-dateutil.
127s Preparing to unpack .../45-python3-dateutil_2.9.0-2_all.deb ...
127s Unpacking python3-dateutil (2.9.0-2) ...
127s Selecting previously unselected package libopenjp2-7:s390x.
127s Preparing to unpack .../46-libopenjp2-7_2.5.0-2ubuntu1_s390x.deb ...
127s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu1) ...
127s Selecting previously unselected package python3-pil:s390x.
127s Preparing to unpack .../47-python3-pil_10.4.0-1ubuntu1_s390x.deb ...
127s Unpacking python3-pil:s390x (10.4.0-1ubuntu1) ...
127s Selecting previously unselected package python3.12-tk.
127s Preparing to unpack .../48-python3.12-tk_3.12.7-3_s390x.deb ...
127s Unpacking python3.12-tk (3.12.7-3) ...
127s Selecting previously unselected package python3.13-tk.
127s Preparing to unpack .../49-python3.13-tk_3.13.0-2_s390x.deb ...
127s Unpacking python3.13-tk (3.13.0-2) ...
127s Selecting previously unselected package python3-tk:s390x.
127s Preparing to unpack .../50-python3-tk_3.12.7-1_s390x.deb ...
127s Unpacking python3-tk:s390x (3.12.7-1) ...
127s Selecting previously unselected package python3-pil.imagetk:s390x.
127s Preparing to unpack .../51-python3-pil.imagetk_10.4.0-1ubuntu1_s390x.deb ...
127s Unpacking python3-pil.imagetk:s390x (10.4.0-1ubuntu1) ...
127s Selecting previously unselected package python3-numpy.
127s Preparing to unpack .../52-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ...
127s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
127s Selecting previously unselected package python3-contourpy.
127s Preparing to unpack .../53-python3-contourpy_1.3.0-2_s390x.deb ...
127s Unpacking python3-contourpy (1.3.0-2) ...
127s Selecting previously unselected package python3-cycler.
127s Preparing to unpack .../54-python3-cycler_0.12.1-1_all.deb ...
127s Unpacking python3-cycler (0.12.1-1) ...
127s Selecting previously unselected package python3-brotli.
127s Preparing to unpack .../55-python3-brotli_1.1.0-2build2_s390x.deb ...
127s Unpacking python3-brotli (1.1.0-2build2) ...
127s Selecting previously unselected package python3-decorator.
127s Preparing to unpack .../56-python3-decorator_5.1.1-5_all.deb ...
127s Unpacking python3-decorator (5.1.1-5) ...
127s Selecting previously unselected package python3-scipy.
127s Preparing to unpack .../57-python3-scipy_1.13.1-5_s390x.deb ...
127s Unpacking python3-scipy (1.13.1-5) ...
127s Selecting previously unselected package python3-ufolib2.
127s Preparing to unpack .../58-python3-ufolib2_0.16.1+dfsg1-1_all.deb ...
127s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ...
127s Selecting previously unselected package python3-mpmath.
127s Preparing to unpack .../59-python3-mpmath_1.3.0-1_all.deb ...
127s Unpacking python3-mpmath (1.3.0-1) ...
127s Selecting previously unselected package python3-sympy.
127s Preparing to unpack .../60-python3-sympy_1.13.3-1_all.deb ...
127s Unpacking python3-sympy (1.13.3-1) ...
128s Selecting previously unselected package python3-tz.
128s Preparing to unpack .../61-python3-tz_2024.1-2_all.deb ...
128s Unpacking python3-tz (2024.1-2) ...
128s Selecting previously unselected package python3-fs.
128s Preparing to unpack .../62-python3-fs_2.4.16-4_all.deb ...
128s Unpacking python3-fs (2.4.16-4) ...
128s Selecting previously unselected package python3-lxml:s390x.
128s Preparing to unpack .../63-python3-lxml_5.3.0-1_s390x.deb ...
128s Unpacking python3-lxml:s390x (5.3.0-1) ...
128s Selecting previously unselected package python3-lz4.
128s Preparing to unpack .../64-python3-lz4_4.0.2+dfsg-1build4_s390x.deb ...
128s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ...
128s Selecting previously unselected package python3-unicodedata2.
128s Preparing to unpack .../65-python3-unicodedata2_15.1.0+ds-1build1_s390x.deb ...
128s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ...
128s Selecting previously unselected package unicode-data.
128s Preparing to unpack .../66-unicode-data_15.1.0-1_all.deb ...
128s Unpacking unicode-data (15.1.0-1) ...
128s Selecting previously unselected package python3-fonttools.
128s Preparing to unpack .../67-python3-fonttools_4.46.0-1build2_s390x.deb ...
128s Unpacking python3-fonttools (4.46.0-1build2) ...
128s Selecting previously unselected package python3-kiwisolver.
128s Preparing to unpack .../68-python3-kiwisolver_1.4.7-2_s390x.deb ...
128s Unpacking python3-kiwisolver (1.4.7-2) ...
128s Selecting previously unselected package python3-packaging.
128s Preparing to unpack .../69-python3-packaging_24.1-1_all.deb ...
128s Unpacking python3-packaging (24.1-1) ...
128s Selecting previously unselected package python3-matplotlib.
128s Preparing to unpack .../70-python3-matplotlib_3.8.3-3_s390x.deb ...
128s Unpacking python3-matplotlib (3.8.3-3) ...
128s Selecting previously unselected package python3-pandas-lib:s390x.
128s Preparing to unpack .../71-python3-pandas-lib_2.2.3+dfsg-5_s390x.deb ...
128s Unpacking python3-pandas-lib:s390x (2.2.3+dfsg-5) ...
128s Selecting previously unselected package python3-pandas.
128s Preparing to unpack .../72-python3-pandas_2.2.3+dfsg-5_all.deb ...
128s Unpacking python3-pandas (2.2.3+dfsg-5) ...
128s Selecting previously unselected package python3-bioframe.
128s Preparing to unpack .../73-python3-bioframe_0.4.1-1_all.deb ...
128s Unpacking python3-bioframe (0.4.1-1) ...
128s Selecting previously unselected package python3-iniconfig.
128s Preparing to unpack .../74-python3-iniconfig_1.1.1-2_all.deb ...
128s Unpacking python3-iniconfig (1.1.1-2) ...
128s Selecting previously unselected package python3-pluggy.
128s Preparing to unpack .../75-python3-pluggy_1.5.0-1_all.deb ...
128s Unpacking python3-pluggy (1.5.0-1) ...
128s Selecting previously unselected package python3-pytest.
128s Preparing to unpack .../76-python3-pytest_8.3.3-1_all.deb ...
128s Unpacking python3-pytest (8.3.3-1) ...
128s Selecting previously unselected package autopkgtest-satdep.
128s Preparing to unpack .../77-1-autopkgtest-satdep.deb ...
128s Unpacking autopkgtest-satdep (0) ...
128s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
128s Setting up liblcms2-2:s390x (2.16-2) ...
128s Setting up python3-iniconfig (1.1.1-2) ...
129s Setting up libsharpyuv0:s390x (1.4.0-0.1) ...
129s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
129s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
129s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ...
129s Setting up fonts-lyx (2.4.2.1-1) ...
129s Setting up x11-common (1:7.7+23ubuntu3) ...
129s Setting up libdeflate0:s390x (1.22-1) ...
129s Setting up libqhull-r8.0:s390x (2020.2-6build1) ...
129s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ...
129s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
129s Setting up python3-tz (2024.1-2) ...
129s Setting up unicode-data (15.1.0-1) ...
129s Setting up python3-six (1.16.0-7) ...
129s Setting up libpython3.13-minimal:s390x (3.13.0-2) ...
129s Setting up python3-decorator (5.1.1-5) ...
129s Setting up libblas3:s390x (3.12.0-3build2) ...
129s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
129s Setting up python3-packaging (24.1-1) ...
130s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
130s Setting up python3-brotli (1.1.0-2build2) ...
130s Setting up python3-cycler (0.12.1-1) ...
130s Setting up libimagequant0:s390x (2.18.0-1build1) ...
130s Setting up fonts-dejavu-mono (2.37-8) ...
130s Setting up python3-kiwisolver (1.4.7-2) ...
130s Setting up libtcl8.6:s390x (8.6.15+dfsg-2) ...
130s Setting up fonts-dejavu-core (2.37-8) ...
130s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
130s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
130s Setting up python3-pluggy (1.5.0-1) ...
130s Setting up libwebp7:s390x (1.4.0-0.1) ...
130s Setting up libxslt1.1:s390x (1.1.39-0exp1ubuntu1) ...
130s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu1) ...
130s Setting up python3.13-minimal (3.13.0-2) ...
131s Setting up libharfbuzz0b:s390x (10.0.1-1) ...
131s Setting up python3-dateutil (2.9.0-2) ...
131s Setting up libxss1:s390x (1:1.2.3-1build3) ...
131s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
131s Setting up python3-mpmath (1.3.0-1) ...
132s Setting up python-matplotlib-data (3.8.3-3) ...
132s Setting up libwebpmux3:s390x (1.4.0-0.1) ...
132s Setting up python3-appdirs (1.4.4-4) ...
132s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ...
132s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
132s Setting up python3-sympy (1.13.3-1) ...
145s Setting up liblapack3:s390x (3.12.0-3build2) ...
145s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
145s Setting up python3.13 (3.13.0-2) ...
146s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
147s Setting up python3-pytest (8.3.3-1) ...
147s Setting up libwebpdemux2:s390x (1.4.0-0.1) ...
147s Setting up python3-all (3.12.7-1) ...
147s Setting up python3-fs (2.4.16-4) ...
147s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
147s Setting up libraqm0:s390x (0.10.1-1build1) ...
147s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
152s Setting up python3-lxml:s390x (5.3.0-1) ...
152s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
152s Setting up python3-contourpy (1.3.0-2) ...
152s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
152s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ...
152s Setting up libxft2:s390x (2.3.6-1build1) ...
152s Setting up python3-scipy (1.13.1-5) ...
159s Setting up libtk8.6:s390x (8.6.15-1) ...
159s Setting up python3-pandas-lib:s390x (2.2.3+dfsg-5) ...
159s Setting up python3.12-tk (3.12.7-3) ...
159s Setting up python3.13-tk (3.13.0-2) ...
159s Setting up python3-pil:s390x (10.4.0-1ubuntu1) ...
160s Setting up python3-pandas (2.2.3+dfsg-5) ...
171s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
171s Setting up blt (2.5.3+dfsg-7build1) ...
171s Setting up python3-tk:s390x (3.12.7-1) ...
171s Setting up python3-pil.imagetk:s390x (10.4.0-1ubuntu1) ...
171s Setting up python3-fonttools (4.46.0-1build2) ...
173s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ...
173s Setting up python3-matplotlib (3.8.3-3) ...
176s Setting up python3-bioframe (0.4.1-1) ...
176s Setting up autopkgtest-satdep (0) ...
176s Processing triggers for libc-bin (2.40-1ubuntu3) ...
176s Processing triggers for systemd (256.5-2ubuntu4) ...
176s Processing triggers for man-db (2.12.1-3) ...
179s (Reading database ... 65183 files and directories currently installed.)
179s Removing autopkgtest-satdep (0) ...
180s autopkgtest [13:03:08]: test run-unit-test: [-----------------------
180s ============================= test session starts ==============================
180s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13
180s cachedir: .pytest_cache
180s rootdir: /tmp/autopkgtest.yC4vfY/autopkgtest_tmp
180s plugins: typeguard-4.4.1
181s collecting ... collected 0 items / 8 errors
181s 
181s ==================================== ERRORS ====================================
181s __________________ ERROR collecting tests/test_core_checks.py __________________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_core_checks.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_core_checks.py:3: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s _______________ ERROR collecting tests/test_core_construction.py _______________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_core_construction.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_core_construction.py:3: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s __________________ ERROR collecting tests/test_core_specs.py ___________________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_core_specs.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_core_specs.py:3: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s ________________ ERROR collecting tests/test_core_stringops.py _________________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_core_stringops.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_core_stringops.py:1: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s ____________________ ERROR collecting tests/test_extras.py _____________________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_extras.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_extras.py:4: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s ______________________ ERROR collecting tests/test_io.py _______________________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_io.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_io.py:3: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s ______________________ ERROR collecting tests/test_ops.py ______________________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_ops.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_ops.py:3: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s __________________ ERROR collecting tests/test_ops_select.py ___________________
181s ImportError while importing test module '/tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_ops_select.py'.
181s Hint: make sure your test modules/packages have valid Python names.
181s Traceback:
181s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
181s     return _bootstrap._gcd_import(name[level:], package, level)
181s tests/test_ops_select.py:1: in <module>
181s     import pandas as pd
181s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
181s     raise ImportError(
181s E   ImportError: Unable to import required dependencies:
181s E   numpy: Error importing numpy: you should not try to import numpy from
181s E           its source directory; please exit the numpy source tree, and relaunch
181s E           your python interpreter from there.
181s =============================== warnings summary ===============================
181s tests/test_io.py:23
181s   /tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s'
181s     assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3)
181s 
181s tests/test_io.py:24
181s   /tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s'
181s     assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6)
181s 
181s tests/test_io.py:25
181s   /tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s'
181s     assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12)
181s 
181s tests/test_io.py:33
181s   /tmp/autopkgtest.yC4vfY/autopkgtest_tmp/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s'
181s     StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True
181s 
181s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
181s =========================== short test summary info ============================
181s ERROR tests/test_core_checks.py
181s ERROR tests/test_core_construction.py
181s ERROR tests/test_core_specs.py
181s ERROR tests/test_core_stringops.py
181s ERROR tests/test_extras.py
181s ERROR tests/test_io.py
181s ERROR tests/test_ops.py
181s ERROR tests/test_ops_select.py
181s !!!!!!!!!!!!!!!!!!! Interrupted: 8 errors during collection !!!!!!!!!!!!!!!!!!!!
181s ======================== 4 warnings, 8 errors in 0.41s =========================
181s autopkgtest [13:03:09]: test run-unit-test: -----------------------]
181s autopkgtest [13:03:09]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
181s run-unit-test        FAIL non-zero exit status 2
182s autopkgtest [13:03:10]: @@@@@@@@@@@@@@@@@@@@ summary
182s run-unit-test        FAIL non-zero exit status 2
194s nova [W] Using flock in prodstack6-s390x
194s flock: timeout while waiting to get lock
194s Creating nova instance adt-plucky-s390x-python-bioframe-20241113-130008-juju-7f2275-prod-proposed-migration-environment-15-b766d67c-ab4a-42cd-8119-d2dd0c8545bf from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...