0s autopkgtest [12:58:17]: starting date and time: 2024-11-13 12:58:17+0000 0s autopkgtest [12:58:17]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [12:58:17]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8fxz4s1j/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bcbio-gff --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-20.secgroup --name adt-plucky-s390x-python-bcbio-gff-20241113-125816-juju-7f2275-prod-proposed-migration-environment-15-69a2a901-5841-49b1-ab18-97674466362e --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 105s autopkgtest [13:00:02]: testbed dpkg architecture: s390x 105s autopkgtest [13:00:02]: testbed apt version: 2.9.8 105s autopkgtest [13:00:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 106s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 106s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [107 kB] 106s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [641 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB] 106s Fetched 1934 kB in 1s (2497 kB/s) 106s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Calculating upgrade... 109s The following NEW packages will be installed: 109s python3.13-gdbm 109s The following packages will be upgraded: 109s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 109s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 252 kB of archives. 109s After this operation, 98.3 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 109s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 109s Fetched 252 kB in 0s (629 kB/s) 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 109s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 109s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 109s Setting up python3-minimal (3.12.7-1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 110s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 110s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 110s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Selecting previously unselected package python3.13-gdbm. 110s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 110s Unpacking python3.13-gdbm (3.13.0-2) ... 110s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 110s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 110s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 110s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 110s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 110s Setting up python3.13-gdbm (3.13.0-2) ... 110s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 110s Setting up python3 (3.12.7-1) ... 110s Setting up python3-gdbm:s390x (3.12.7-1) ... 110s Processing triggers for man-db (2.12.1-3) ... 110s Processing triggers for libc-bin (2.40-1ubuntu3) ... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 111s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 111s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 111s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 112s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest [13:00:12]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 115s autopkgtest [13:00:12]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bcbio-gff 116s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (dsc) [2386 B] 116s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (tar) [20.1 kB] 116s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (diff) [23.9 kB] 116s gpgv: Signature made Tue Nov 5 22:11:23 2024 UTC 116s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 116s gpgv: issuer "emollier@debian.org" 116s gpgv: Can't check signature: No public key 116s dpkg-source: warning: cannot verify inline signature for ./python-bcbio-gff_0.7.1-2.dsc: no acceptable signature found 116s autopkgtest [13:00:13]: testing package python-bcbio-gff version 0.7.1-2 117s autopkgtest [13:00:14]: build not needed 117s autopkgtest [13:00:14]: test run-unit-test: preparing testbed 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Starting pkgProblemResolver with broken count: 0 122s Starting 2 pkgProblemResolver with broken count: 0 122s Done 122s The following additional packages will be installed: 122s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 122s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 122s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 122s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 libopenjp2-7 libpixman-1-0 122s libpython3.13-minimal libpython3.13-stdlib libraqm0 libsharpyuv0 libtiff6 122s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 122s python3-all python3-bcbio-gff python3-biopython python3-cairo 122s python3-freetype python3-numpy python3-pil python3-reportlab 122s python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base 122s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 122s Suggested packages: 122s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 122s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 122s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 122s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 122s gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc 122s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 122s rl-renderpm python3.13-venv python3.13-doc binfmt-support sgml-base-doc 122s debhelper 122s Recommended packages: 122s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 122s The following NEW packages will be installed: 122s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 122s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 122s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 122s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 122s libopenjp2-7 libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib 122s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 122s libxcb-render0 libxcb-shm0 libxrender1 python3-all python3-bcbio-gff 122s python3-biopython python3-cairo python3-freetype python3-numpy python3-pil 122s python3-reportlab python3-rlpycairo python3-six python3.13 122s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 122s xfonts-utils xml-core 122s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 122s Need to get 34.0 MB/34.0 MB of archives. 122s After this operation, 108 MB of additional disk space will be used. 122s Get:1 /tmp/autopkgtest.iTGONy/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B] 123s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 123s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 123s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x sgml-base all 1.31 [11.4 kB] 123s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 123s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 123s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 123s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 123s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 123s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 123s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 123s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 124s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 124s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 124s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 124s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 124s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 124s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 124s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 124s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 124s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB] 124s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 124s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 124s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 124s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB] 124s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 124s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB] 124s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 124s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 124s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 124s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 124s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB] 124s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB] 124s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 124s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB] 124s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 124s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB] 124s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB] 124s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 124s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 124s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 124s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB] 125s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu1 [492 kB] 125s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cairo s390x 1.26.1-2 [119 kB] 125s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-freetype all 2.5.1-1 [92.3 kB] 125s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 125s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-reportlab all 4.2.5-1 [1107 kB] 125s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x xml-core all 0.19 [20.3 kB] 125s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 125s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-biopython s390x 1.84+dfsg-4 [1721 kB] 125s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB] 125s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-bcbio-gff all 0.7.1-2 [33.9 kB] 125s Fetched 34.0 MB in 2s (15.0 MB/s) 125s Selecting previously unselected package libpython3.13-minimal:s390x. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 125s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 125s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 125s Selecting previously unselected package python3.13-minimal. 125s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 125s Unpacking python3.13-minimal (3.13.0-2) ... 125s Selecting previously unselected package sgml-base. 125s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 125s Unpacking sgml-base (1.31) ... 125s Selecting previously unselected package fonts-dejavu-mono. 125s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 125s Unpacking fonts-dejavu-mono (2.37-8) ... 125s Selecting previously unselected package fonts-dejavu-core. 125s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 125s Unpacking fonts-dejavu-core (2.37-8) ... 125s Selecting previously unselected package libfontenc1:s390x. 125s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 125s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 125s Selecting previously unselected package libfreetype6:s390x. 125s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 125s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 125s Selecting previously unselected package x11-common. 125s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu3_all.deb ... 125s Unpacking x11-common (1:7.7+23ubuntu3) ... 125s Selecting previously unselected package xfonts-encodings. 125s Preparing to unpack .../08-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 125s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 125s Selecting previously unselected package xfonts-utils. 125s Preparing to unpack .../09-xfonts-utils_1%3a7.7+7_s390x.deb ... 125s Unpacking xfonts-utils (1:7.7+7) ... 125s Selecting previously unselected package fonts-urw-base35. 125s Preparing to unpack .../10-fonts-urw-base35_20200910-8_all.deb ... 125s Unpacking fonts-urw-base35 (20200910-8) ... 125s Selecting previously unselected package fontconfig-config. 125s Preparing to unpack .../11-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 125s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 125s Selecting previously unselected package libblas3:s390x. 125s Preparing to unpack .../12-libblas3_3.12.0-3build2_s390x.deb ... 125s Unpacking libblas3:s390x (3.12.0-3build2) ... 125s Selecting previously unselected package libfontconfig1:s390x. 125s Preparing to unpack .../13-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 125s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 125s Selecting previously unselected package libpixman-1-0:s390x. 125s Preparing to unpack .../14-libpixman-1-0_0.44.0-3_s390x.deb ... 125s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 125s Selecting previously unselected package libxcb-render0:s390x. 125s Preparing to unpack .../15-libxcb-render0_1.17.0-2_s390x.deb ... 125s Unpacking libxcb-render0:s390x (1.17.0-2) ... 125s Selecting previously unselected package libxcb-shm0:s390x. 125s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_s390x.deb ... 125s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 125s Selecting previously unselected package libxrender1:s390x. 125s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 125s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 125s Selecting previously unselected package libcairo2:s390x. 125s Preparing to unpack .../18-libcairo2_1.18.2-2_s390x.deb ... 125s Unpacking libcairo2:s390x (1.18.2-2) ... 125s Selecting previously unselected package libdeflate0:s390x. 125s Preparing to unpack .../19-libdeflate0_1.22-1_s390x.deb ... 125s Unpacking libdeflate0:s390x (1.22-1) ... 125s Selecting previously unselected package libgfortran5:s390x. 125s Preparing to unpack .../20-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 125s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 125s Selecting previously unselected package libgomp1:s390x. 125s Preparing to unpack .../21-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 125s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 125s Selecting previously unselected package libgraphite2-3:s390x. 125s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 125s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 125s Selecting previously unselected package libharfbuzz0b:s390x. 125s Preparing to unpack .../23-libharfbuzz0b_10.0.1-1_s390x.deb ... 125s Unpacking libharfbuzz0b:s390x (10.0.1-1) ... 125s Selecting previously unselected package libimagequant0:s390x. 125s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_s390x.deb ... 125s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 125s Selecting previously unselected package libjpeg-turbo8:s390x. 125s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ... 125s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 125s Selecting previously unselected package libjpeg8:s390x. 125s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_s390x.deb ... 125s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 125s Selecting previously unselected package liblapack3:s390x. 125s Preparing to unpack .../27-liblapack3_3.12.0-3build2_s390x.deb ... 125s Unpacking liblapack3:s390x (3.12.0-3build2) ... 126s Selecting previously unselected package liblcms2-2:s390x. 126s Preparing to unpack .../28-liblcms2-2_2.16-2_s390x.deb ... 126s Unpacking liblcms2-2:s390x (2.16-2) ... 126s Selecting previously unselected package libpython3.13-stdlib:s390x. 126s Preparing to unpack .../29-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 126s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 126s Selecting previously unselected package libraqm0:s390x. 126s Preparing to unpack .../30-libraqm0_0.10.1-1build1_s390x.deb ... 126s Unpacking libraqm0:s390x (0.10.1-1build1) ... 126s Selecting previously unselected package libsharpyuv0:s390x. 126s Preparing to unpack .../31-libsharpyuv0_1.4.0-0.1_s390x.deb ... 126s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ... 126s Selecting previously unselected package libjbig0:s390x. 126s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 126s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 126s Selecting previously unselected package libwebp7:s390x. 126s Preparing to unpack .../33-libwebp7_1.4.0-0.1_s390x.deb ... 126s Unpacking libwebp7:s390x (1.4.0-0.1) ... 126s Selecting previously unselected package libtiff6:s390x. 126s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 126s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 126s Selecting previously unselected package libwebpdemux2:s390x. 126s Preparing to unpack .../35-libwebpdemux2_1.4.0-0.1_s390x.deb ... 126s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ... 126s Selecting previously unselected package libwebpmux3:s390x. 126s Preparing to unpack .../36-libwebpmux3_1.4.0-0.1_s390x.deb ... 126s Unpacking libwebpmux3:s390x (1.4.0-0.1) ... 126s Selecting previously unselected package python3.13. 126s Preparing to unpack .../37-python3.13_3.13.0-2_s390x.deb ... 126s Unpacking python3.13 (3.13.0-2) ... 126s Selecting previously unselected package python3-all. 126s Preparing to unpack .../38-python3-all_3.12.7-1_s390x.deb ... 126s Unpacking python3-all (3.12.7-1) ... 126s Selecting previously unselected package python3-numpy. 126s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 126s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 126s Selecting previously unselected package libopenjp2-7:s390x. 126s Preparing to unpack .../40-libopenjp2-7_2.5.0-2ubuntu1_s390x.deb ... 126s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 126s Selecting previously unselected package python3-pil:s390x. 126s Preparing to unpack .../41-python3-pil_10.4.0-1ubuntu1_s390x.deb ... 126s Unpacking python3-pil:s390x (10.4.0-1ubuntu1) ... 126s Selecting previously unselected package python3-cairo. 126s Preparing to unpack .../42-python3-cairo_1.26.1-2_s390x.deb ... 126s Unpacking python3-cairo (1.26.1-2) ... 126s Selecting previously unselected package python3-freetype. 126s Preparing to unpack .../43-python3-freetype_2.5.1-1_all.deb ... 126s Unpacking python3-freetype (2.5.1-1) ... 126s Selecting previously unselected package python3-rlpycairo. 126s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 126s Unpacking python3-rlpycairo (0.3.0-3) ... 126s Selecting previously unselected package python3-reportlab. 126s Preparing to unpack .../45-python3-reportlab_4.2.5-1_all.deb ... 126s Unpacking python3-reportlab (4.2.5-1) ... 126s Selecting previously unselected package xml-core. 126s Preparing to unpack .../46-xml-core_0.19_all.deb ... 126s Unpacking xml-core (0.19) ... 126s Selecting previously unselected package w3c-sgml-lib. 126s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 126s Unpacking w3c-sgml-lib (1.3-3) ... 126s Selecting previously unselected package python3-biopython. 126s Preparing to unpack .../48-python3-biopython_1.84+dfsg-4_s390x.deb ... 126s Unpacking python3-biopython (1.84+dfsg-4) ... 126s Selecting previously unselected package python3-six. 126s Preparing to unpack .../49-python3-six_1.16.0-7_all.deb ... 126s Unpacking python3-six (1.16.0-7) ... 126s Selecting previously unselected package python3-bcbio-gff. 126s Preparing to unpack .../50-python3-bcbio-gff_0.7.1-2_all.deb ... 126s Unpacking python3-bcbio-gff (0.7.1-2) ... 126s Selecting previously unselected package autopkgtest-satdep. 126s Preparing to unpack .../51-1-autopkgtest-satdep.deb ... 126s Unpacking autopkgtest-satdep (0) ... 126s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 126s Setting up liblcms2-2:s390x (2.16-2) ... 126s Setting up libpixman-1-0:s390x (0.44.0-3) ... 126s Setting up libsharpyuv0:s390x (1.4.0-0.1) ... 126s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 126s Setting up libxcb-render0:s390x (1.17.0-2) ... 126s Setting up x11-common (1:7.7+23ubuntu3) ... 126s Setting up libdeflate0:s390x (1.22-1) ... 126s Setting up libxcb-shm0:s390x (1.17.0-2) ... 126s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 126s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 126s Setting up python3-six (1.16.0-7) ... 127s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 127s Setting up libfontenc1:s390x (1:1.1.8-1build1) ... 127s Setting up libblas3:s390x (3.12.0-3build2) ... 127s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 127s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 127s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 127s Setting up libimagequant0:s390x (2.18.0-1build1) ... 127s Setting up fonts-dejavu-mono (2.37-8) ... 127s Setting up fonts-dejavu-core (2.37-8) ... 127s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 127s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 127s Setting up libwebp7:s390x (1.4.0-0.1) ... 127s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 127s Setting up python3.13-minimal (3.13.0-2) ... 127s Setting up libharfbuzz0b:s390x (10.0.1-1) ... 127s Setting up sgml-base (1.31) ... 127s Setting up libwebpmux3:s390x (1.4.0-0.1) ... 127s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 127s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 127s Setting up liblapack3:s390x (3.12.0-3build2) ... 127s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 127s Setting up python3.13 (3.13.0-2) ... 128s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 128s Setting up libwebpdemux2:s390x (1.4.0-0.1) ... 128s Setting up python3-all (3.12.7-1) ... 128s Setting up python3-freetype (2.5.1-1) ... 129s Setting up xfonts-utils (1:7.7+7) ... 129s Setting up libraqm0:s390x (0.10.1-1build1) ... 129s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 132s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 132s Setting up xml-core (0.19) ... 132s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 132s Setting up fonts-urw-base35 (20200910-8) ... 132s Setting up libcairo2:s390x (1.18.2-2) ... 132s Setting up python3-pil:s390x (10.4.0-1ubuntu1) ... 133s Setting up python3-cairo (1.26.1-2) ... 133s Setting up python3-rlpycairo (0.3.0-3) ... 133s Setting up python3-reportlab (4.2.5-1) ... 135s Processing triggers for libc-bin (2.40-1ubuntu3) ... 135s Processing triggers for systemd (256.5-2ubuntu4) ... 135s Processing triggers for man-db (2.12.1-3) ... 135s Processing triggers for sgml-base (1.31) ... 135s Setting up w3c-sgml-lib (1.3-3) ... 155s Setting up python3-biopython (1.84+dfsg-4) ... 157s Setting up python3-bcbio-gff (0.7.1-2) ... 157s Setting up autopkgtest-satdep (0) ... 159s (Reading database ... 59523 files and directories currently installed.) 159s Removing autopkgtest-satdep (0) ... 160s autopkgtest [13:00:57]: test run-unit-test: [----------------------- 160s Traceback (most recent call last): 160s File "/tmp/autopkgtest.iTGONy/autopkgtest_tmp/test_GFFSeqIOFeatureAdder.py", line 11, in 160s from Bio import SeqIO 160s File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in 160s from Bio.SeqIO import TwoBitIO 160s File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in 160s raise MissingPythonDependencyError( 160s ...<2 lines>... 160s ) from None 160s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 160s autopkgtest [13:00:57]: test run-unit-test: -----------------------] 161s run-unit-test FAIL non-zero exit status 1 161s autopkgtest [13:00:58]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 161s autopkgtest [13:00:58]: test autodep8-python3: preparing testbed 290s autopkgtest [13:03:07]: testbed dpkg architecture: s390x 290s autopkgtest [13:03:07]: testbed apt version: 2.9.8 290s autopkgtest [13:03:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 291s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 291s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 291s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 291s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 291s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 291s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [107 kB] 291s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [641 kB] 291s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB] 291s Fetched 1934 kB in 1s (2317 kB/s) 291s Reading package lists... 293s Reading package lists... 293s Building dependency tree... 293s Reading state information... 294s Calculating upgrade... 294s The following NEW packages will be installed: 294s python3.13-gdbm 294s The following packages will be upgraded: 294s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 294s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 294s Need to get 252 kB of archives. 294s After this operation, 98.3 kB of additional disk space will be used. 294s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 294s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 294s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 294s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 295s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 295s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 295s Fetched 252 kB in 1s (284 kB/s) 295s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 295s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 295s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 295s Setting up python3-minimal (3.12.7-1) ... 295s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 295s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 295s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 295s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 295s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 295s Selecting previously unselected package python3.13-gdbm. 295s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 295s Unpacking python3.13-gdbm (3.13.0-2) ... 295s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 295s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 295s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 295s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 295s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 295s Setting up python3.13-gdbm (3.13.0-2) ... 295s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 295s Setting up python3 (3.12.7-1) ... 295s Setting up python3-gdbm:s390x (3.12.7-1) ... 295s Processing triggers for man-db (2.12.1-3) ... 296s Processing triggers for libc-bin (2.40-1ubuntu3) ... 296s Reading package lists... 296s Building dependency tree... 296s Reading state information... 296s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 297s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 297s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 297s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 297s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 298s Reading package lists... 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s Calculating upgrade... 298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 298s Reading package lists... 298s Building dependency tree... 298s Reading state information... 298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 303s Reading package lists... 303s Building dependency tree... 303s Reading state information... 303s Starting pkgProblemResolver with broken count: 0 303s Starting 2 pkgProblemResolver with broken count: 0 303s Done 303s The following additional packages will be installed: 303s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 303s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 303s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 303s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 libopenjp2-7 libpixman-1-0 303s libpython3.13-minimal libpython3.13-stdlib libraqm0 libsharpyuv0 libtiff6 303s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 303s python3-all python3-bcbio-gff python3-biopython python3-cairo 303s python3-freetype python3-numpy python3-pil python3-reportlab 303s python3-rlpycairo python3-six python3.13 python3.13-minimal sgml-base 303s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 303s Suggested packages: 303s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 303s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 303s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 303s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 303s gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc 303s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 303s rl-renderpm python3.13-venv python3.13-doc binfmt-support sgml-base-doc 303s debhelper 303s Recommended packages: 303s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 303s The following NEW packages will be installed: 303s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 303s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 303s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 303s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 303s libopenjp2-7 libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib 303s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 303s libxcb-render0 libxcb-shm0 libxrender1 python3-all python3-bcbio-gff 303s python3-biopython python3-cairo python3-freetype python3-numpy python3-pil 303s python3-reportlab python3-rlpycairo python3-six python3.13 303s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 303s xfonts-utils xml-core 303s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 303s Need to get 34.0 MB/34.0 MB of archives. 303s After this operation, 108 MB of additional disk space will be used. 303s Get:1 /tmp/autopkgtest.iTGONy/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B] 303s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 304s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 304s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x sgml-base all 1.31 [11.4 kB] 304s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 304s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 304s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 304s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 304s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 304s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 304s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 304s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 304s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 304s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 304s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 304s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 304s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 304s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 304s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 304s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 304s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.22-1 [46.1 kB] 304s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 304s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 304s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 304s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB] 304s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 304s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB] 304s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 304s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 304s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 304s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 304s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB] 304s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB] 304s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 304s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB] 304s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 304s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB] 304s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB] 304s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 305s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 305s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 305s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB] 305s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu1 [492 kB] 305s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cairo s390x 1.26.1-2 [119 kB] 305s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-freetype all 2.5.1-1 [92.3 kB] 305s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 305s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-reportlab all 4.2.5-1 [1107 kB] 305s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x xml-core all 0.19 [20.3 kB] 305s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 305s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-biopython s390x 1.84+dfsg-4 [1721 kB] 305s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB] 305s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-bcbio-gff all 0.7.1-2 [33.9 kB] 305s Fetched 34.0 MB in 2s (20.3 MB/s) 305s Selecting previously unselected package libpython3.13-minimal:s390x. 305s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 305s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 305s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 305s Selecting previously unselected package python3.13-minimal. 305s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 305s Unpacking python3.13-minimal (3.13.0-2) ... 305s Selecting previously unselected package sgml-base. 305s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 305s Unpacking sgml-base (1.31) ... 305s Selecting previously unselected package fonts-dejavu-mono. 305s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 305s Unpacking fonts-dejavu-mono (2.37-8) ... 305s Selecting previously unselected package fonts-dejavu-core. 305s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 305s Unpacking fonts-dejavu-core (2.37-8) ... 305s Selecting previously unselected package libfontenc1:s390x. 305s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 305s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 305s Selecting previously unselected package libfreetype6:s390x. 305s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 305s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 305s Selecting previously unselected package x11-common. 305s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu3_all.deb ... 305s Unpacking x11-common (1:7.7+23ubuntu3) ... 305s Selecting previously unselected package xfonts-encodings. 305s Preparing to unpack .../08-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 305s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 305s Selecting previously unselected package xfonts-utils. 305s Preparing to unpack .../09-xfonts-utils_1%3a7.7+7_s390x.deb ... 305s Unpacking xfonts-utils (1:7.7+7) ... 305s Selecting previously unselected package fonts-urw-base35. 305s Preparing to unpack .../10-fonts-urw-base35_20200910-8_all.deb ... 305s Unpacking fonts-urw-base35 (20200910-8) ... 305s Selecting previously unselected package fontconfig-config. 305s Preparing to unpack .../11-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 306s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 306s Selecting previously unselected package libblas3:s390x. 306s Preparing to unpack .../12-libblas3_3.12.0-3build2_s390x.deb ... 306s Unpacking libblas3:s390x (3.12.0-3build2) ... 306s Selecting previously unselected package libfontconfig1:s390x. 306s Preparing to unpack .../13-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 306s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 306s Selecting previously unselected package libpixman-1-0:s390x. 306s Preparing to unpack .../14-libpixman-1-0_0.44.0-3_s390x.deb ... 306s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 306s Selecting previously unselected package libxcb-render0:s390x. 306s Preparing to unpack .../15-libxcb-render0_1.17.0-2_s390x.deb ... 306s Unpacking libxcb-render0:s390x (1.17.0-2) ... 306s Selecting previously unselected package libxcb-shm0:s390x. 306s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_s390x.deb ... 306s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 306s Selecting previously unselected package libxrender1:s390x. 306s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 306s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 306s Selecting previously unselected package libcairo2:s390x. 306s Preparing to unpack .../18-libcairo2_1.18.2-2_s390x.deb ... 306s Unpacking libcairo2:s390x (1.18.2-2) ... 306s Selecting previously unselected package libdeflate0:s390x. 306s Preparing to unpack .../19-libdeflate0_1.22-1_s390x.deb ... 306s Unpacking libdeflate0:s390x (1.22-1) ... 306s Selecting previously unselected package libgfortran5:s390x. 306s Preparing to unpack .../20-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 306s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 306s Selecting previously unselected package libgomp1:s390x. 306s Preparing to unpack .../21-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 306s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 306s Selecting previously unselected package libgraphite2-3:s390x. 306s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 306s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 306s Selecting previously unselected package libharfbuzz0b:s390x. 306s Preparing to unpack .../23-libharfbuzz0b_10.0.1-1_s390x.deb ... 306s Unpacking libharfbuzz0b:s390x (10.0.1-1) ... 306s Selecting previously unselected package libimagequant0:s390x. 306s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_s390x.deb ... 306s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 306s Selecting previously unselected package libjpeg-turbo8:s390x. 306s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ... 306s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 306s Selecting previously unselected package libjpeg8:s390x. 306s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_s390x.deb ... 306s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 306s Selecting previously unselected package liblapack3:s390x. 306s Preparing to unpack .../27-liblapack3_3.12.0-3build2_s390x.deb ... 306s Unpacking liblapack3:s390x (3.12.0-3build2) ... 306s Selecting previously unselected package liblcms2-2:s390x. 306s Preparing to unpack .../28-liblcms2-2_2.16-2_s390x.deb ... 306s Unpacking liblcms2-2:s390x (2.16-2) ... 306s Selecting previously unselected package libpython3.13-stdlib:s390x. 306s Preparing to unpack .../29-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 306s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 306s Selecting previously unselected package libraqm0:s390x. 306s Preparing to unpack .../30-libraqm0_0.10.1-1build1_s390x.deb ... 306s Unpacking libraqm0:s390x (0.10.1-1build1) ... 306s Selecting previously unselected package libsharpyuv0:s390x. 306s Preparing to unpack .../31-libsharpyuv0_1.4.0-0.1_s390x.deb ... 306s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ... 306s Selecting previously unselected package libjbig0:s390x. 306s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 306s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 306s Selecting previously unselected package libwebp7:s390x. 306s Preparing to unpack .../33-libwebp7_1.4.0-0.1_s390x.deb ... 306s Unpacking libwebp7:s390x (1.4.0-0.1) ... 306s Selecting previously unselected package libtiff6:s390x. 306s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 306s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 306s Selecting previously unselected package libwebpdemux2:s390x. 306s Preparing to unpack .../35-libwebpdemux2_1.4.0-0.1_s390x.deb ... 306s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ... 306s Selecting previously unselected package libwebpmux3:s390x. 306s Preparing to unpack .../36-libwebpmux3_1.4.0-0.1_s390x.deb ... 306s Unpacking libwebpmux3:s390x (1.4.0-0.1) ... 306s Selecting previously unselected package python3.13. 306s Preparing to unpack .../37-python3.13_3.13.0-2_s390x.deb ... 306s Unpacking python3.13 (3.13.0-2) ... 306s Selecting previously unselected package python3-all. 306s Preparing to unpack .../38-python3-all_3.12.7-1_s390x.deb ... 306s Unpacking python3-all (3.12.7-1) ... 306s Selecting previously unselected package python3-numpy. 306s Preparing to unpack .../39-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 306s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 306s Selecting previously unselected package libopenjp2-7:s390x. 306s Preparing to unpack .../40-libopenjp2-7_2.5.0-2ubuntu1_s390x.deb ... 306s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 306s Selecting previously unselected package python3-pil:s390x. 306s Preparing to unpack .../41-python3-pil_10.4.0-1ubuntu1_s390x.deb ... 306s Unpacking python3-pil:s390x (10.4.0-1ubuntu1) ... 306s Selecting previously unselected package python3-cairo. 306s Preparing to unpack .../42-python3-cairo_1.26.1-2_s390x.deb ... 306s Unpacking python3-cairo (1.26.1-2) ... 306s Selecting previously unselected package python3-freetype. 306s Preparing to unpack .../43-python3-freetype_2.5.1-1_all.deb ... 306s Unpacking python3-freetype (2.5.1-1) ... 306s Selecting previously unselected package python3-rlpycairo. 306s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 306s Unpacking python3-rlpycairo (0.3.0-3) ... 306s Selecting previously unselected package python3-reportlab. 306s Preparing to unpack .../45-python3-reportlab_4.2.5-1_all.deb ... 306s Unpacking python3-reportlab (4.2.5-1) ... 306s Selecting previously unselected package xml-core. 306s Preparing to unpack .../46-xml-core_0.19_all.deb ... 306s Unpacking xml-core (0.19) ... 306s Selecting previously unselected package w3c-sgml-lib. 306s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 306s Unpacking w3c-sgml-lib (1.3-3) ... 306s Selecting previously unselected package python3-biopython. 306s Preparing to unpack .../48-python3-biopython_1.84+dfsg-4_s390x.deb ... 306s Unpacking python3-biopython (1.84+dfsg-4) ... 306s Selecting previously unselected package python3-six. 306s Preparing to unpack .../49-python3-six_1.16.0-7_all.deb ... 306s Unpacking python3-six (1.16.0-7) ... 306s Selecting previously unselected package python3-bcbio-gff. 306s Preparing to unpack .../50-python3-bcbio-gff_0.7.1-2_all.deb ... 306s Unpacking python3-bcbio-gff (0.7.1-2) ... 306s Selecting previously unselected package autopkgtest-satdep. 306s Preparing to unpack .../51-2-autopkgtest-satdep.deb ... 306s Unpacking autopkgtest-satdep (0) ... 306s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 306s Setting up liblcms2-2:s390x (2.16-2) ... 306s Setting up libpixman-1-0:s390x (0.44.0-3) ... 306s Setting up libsharpyuv0:s390x (1.4.0-0.1) ... 306s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 306s Setting up libxcb-render0:s390x (1.17.0-2) ... 306s Setting up x11-common (1:7.7+23ubuntu3) ... 307s Setting up libdeflate0:s390x (1.22-1) ... 307s Setting up libxcb-shm0:s390x (1.17.0-2) ... 307s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 307s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 307s Setting up python3-six (1.16.0-7) ... 307s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 307s Setting up libfontenc1:s390x (1:1.1.8-1build1) ... 307s Setting up libblas3:s390x (3.12.0-3build2) ... 307s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 307s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 307s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 307s Setting up libimagequant0:s390x (2.18.0-1build1) ... 307s Setting up fonts-dejavu-mono (2.37-8) ... 307s Setting up fonts-dejavu-core (2.37-8) ... 307s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 307s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 307s Setting up libwebp7:s390x (1.4.0-0.1) ... 307s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu1) ... 307s Setting up python3.13-minimal (3.13.0-2) ... 308s Setting up libharfbuzz0b:s390x (10.0.1-1) ... 308s Setting up sgml-base (1.31) ... 308s Setting up libwebpmux3:s390x (1.4.0-0.1) ... 308s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 308s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 308s Setting up liblapack3:s390x (3.12.0-3build2) ... 308s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 308s Setting up python3.13 (3.13.0-2) ... 309s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 309s Setting up libwebpdemux2:s390x (1.4.0-0.1) ... 309s Setting up python3-all (3.12.7-1) ... 309s Setting up python3-freetype (2.5.1-1) ... 309s Setting up xfonts-utils (1:7.7+7) ... 309s Setting up libraqm0:s390x (0.10.1-1build1) ... 309s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 313s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 313s Setting up xml-core (0.19) ... 313s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 313s Setting up fonts-urw-base35 (20200910-8) ... 313s Setting up libcairo2:s390x (1.18.2-2) ... 313s Setting up python3-pil:s390x (10.4.0-1ubuntu1) ... 314s Setting up python3-cairo (1.26.1-2) ... 314s Setting up python3-rlpycairo (0.3.0-3) ... 314s Setting up python3-reportlab (4.2.5-1) ... 316s Processing triggers for libc-bin (2.40-1ubuntu3) ... 316s Processing triggers for systemd (256.5-2ubuntu4) ... 316s Processing triggers for man-db (2.12.1-3) ... 316s Processing triggers for sgml-base (1.31) ... 316s Setting up w3c-sgml-lib (1.3-3) ... 338s Setting up python3-biopython (1.84+dfsg-4) ... 340s Setting up python3-bcbio-gff (0.7.1-2) ... 340s Setting up autopkgtest-satdep (0) ... 343s (Reading database ... 59523 files and directories currently installed.) 343s Removing autopkgtest-satdep (0) ... 344s autopkgtest [13:04:01]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import BCBio.GFF; print(BCBio.GFF)" ; done 344s autopkgtest [13:04:01]: test autodep8-python3: [----------------------- 345s Testing with python3.13: 345s Traceback (most recent call last): 345s File "", line 1, in 345s import BCBio.GFF; print(BCBio.GFF) 345s ^^^^^^^^^^^^^^^^ 345s File "/usr/lib/python3/dist-packages/BCBio/GFF/__init__.py", line 3, in 345s from BCBio.GFF.GFFParser import GFFParser, DiscoGFFParser, GFFExaminer, parse, parse_simple 345s File "/usr/lib/python3/dist-packages/BCBio/GFF/GFFParser.py", line 44, in 345s from Bio import SeqIO 345s File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in 345s from Bio.SeqIO import TwoBitIO 345s File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in 345s raise MissingPythonDependencyError( 345s ...<2 lines>... 345s ) from None 345s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 345s autopkgtest [13:04:02]: test autodep8-python3: -----------------------] 345s autodep8-python3 FAIL non-zero exit status 1 345s autopkgtest [13:04:02]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 346s autopkgtest [13:04:03]: @@@@@@@@@@@@@@@@@@@@ summary 346s run-unit-test FAIL non-zero exit status 1 346s autodep8-python3 FAIL non-zero exit status 1 351s nova [W] Using flock in prodstack6-s390x 351s flock: timeout while waiting to get lock 351s Creating nova instance adt-plucky-s390x-python-bcbio-gff-20241113-125816-juju-7f2275-prod-proposed-migration-environment-15-69a2a901-5841-49b1-ab18-97674466362e from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)... 351s nova [W] Using flock in prodstack6-s390x 351s Creating nova instance adt-plucky-s390x-python-bcbio-gff-20241113-125816-juju-7f2275-prod-proposed-migration-environment-15-69a2a901-5841-49b1-ab18-97674466362e from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...