0s autopkgtest [12:09:26]: starting date and time: 2025-03-15 12:09:26+0000 0s autopkgtest [12:09:26]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:09:26]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e7sy_mmo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-17.secgroup --name adt-plucky-s390x-pymol-20250315-115535-juju-7f2275-prod-proposed-migration-environment-20-4e2cbbaf-9099-4a13-be0f-d1a2a2fabed6 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 88s autopkgtest [12:10:54]: testbed dpkg architecture: s390x 88s autopkgtest [12:10:54]: testbed apt version: 2.9.33 89s autopkgtest [12:10:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s autopkgtest [12:10:55]: testbed release detected to be: None 89s autopkgtest [12:10:55]: updating testbed package index (apt update) 90s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 90s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 90s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB] 91s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 91s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB] 91s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [80.7 kB] 91s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1852 B] 91s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 91s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [335 kB] 91s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [14.4 kB] 91s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 91s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [328 B] 91s Fetched 1034 kB in 1s (706 kB/s) 92s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Calculating upgrade... 93s Calculating upgrade... 93s The following packages were automatically installed and are no longer required: 93s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 93s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 93s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 93s linux-tools-6.11.0-8-generic 93s Use 'sudo apt autoremove' to remove them. 93s The following packages will be upgraded: 93s python3-jinja2 strace 93s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Need to get 609 kB of archives. 93s After this operation, 27.6 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 93s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 94s Fetched 609 kB in 1s (677 kB/s) 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 94s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 94s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 94s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 94s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 94s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 94s Setting up strace (6.13+ds-1ubuntu1) ... 94s Processing triggers for man-db (2.13.0-1) ... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Solving dependencies... 95s The following packages will be REMOVED: 95s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 95s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 95s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 95s linux-tools-6.11.0-8-generic* 95s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 95s After this operation, 167 MB disk space will be freed. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 95s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 95s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 95s Removing libpython3.12t64:s390x (3.12.9-1) ... 95s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 95s Removing libnsl2:s390x (1.3.0-3build3) ... 95s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 95s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 95s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 96s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 96s Processing triggers for libc-bin (2.41-1ubuntu1) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 96s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 96s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 97s autopkgtest [12:11:03]: upgrading testbed (apt dist-upgrade and autopurge) 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 97s Entering ResolveByKeep 98s 98s Calculating upgrade... 98s The following packages will be upgraded: 98s libc-bin libc-dev-bin libc6 libc6-dev locales 98s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 9512 kB of archives. 98s After this operation, 8192 B of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 102s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 103s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 107s Preconfiguring packages ... 107s Fetched 9512 kB in 9s (1039 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 107s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 107s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 107s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 107s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Setting up libc6:s390x (2.41-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 108s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 108s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up libc-bin (2.41-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 108s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 108s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up locales (2.41-1ubuntu2) ... 108s Generating locales (this might take a while)... 109s en_US.UTF-8... done 109s Generation complete. 109s Setting up libc-dev-bin (2.41-1ubuntu2) ... 109s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 109s Processing triggers for man-db (2.13.0-1) ... 110s Processing triggers for systemd (257.3-1ubuntu3) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Starting pkgProblemResolver with broken count: 0 111s Starting 2 pkgProblemResolver with broken count: 0 111s Done 111s Solving dependencies... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s autopkgtest [12:11:17]: rebooting testbed after setup commands that affected boot 131s autopkgtest [12:11:37]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 133s autopkgtest [12:11:39]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 159s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (dsc) [2324 B] 160s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (tar) [22.0 MB] 160s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (diff) [57.8 kB] 160s gpgv: Signature made Tue Mar 4 18:06:31 2025 UTC 160s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 160s gpgv: Can't check signature: No public key 160s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-3build2.dsc: no acceptable signature found 160s autopkgtest [12:12:06]: testing package pymol version 3.0.0+dfsg-3build2 161s autopkgtest [12:12:07]: build not needed 164s autopkgtest [12:12:10]: test command1: preparing testbed 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 165s The following NEW packages will be installed: 165s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 165s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 165s libdouble-conversion3 libegl-mesa0 libegl1 libfontconfig1 libfreetype6 165s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 libglu1-mesa 165s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 165s libhdf5-310 libhdf5-hl-310 libice6 libinput-bin libinput10 libjpeg-turbo8 165s libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf22 libopengl0 165s libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 165s libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 165s libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 165s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 165s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 165s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 165s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 165s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 165s libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium 165s pymol pymol-data python3-legacy-cgi python3-numpy python3-numpy-dev 165s python3-opengl python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 165s python3-pyqt5.sip x11-common 165s 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 47.8 MB of archives. 165s After this operation, 184 MB of additional disk space will be used. 165s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy-dev s390x 1:2.2.3+ds-5 [147 kB] 165s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 166s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 166s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 170s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:2.2.3+ds-5 [4396 kB] 175s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 176s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 177s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 178s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 178s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 178s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 178s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 178s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-16ubuntu1 [30.9 kB] 178s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-16ubuntu1 [23.5 kB] 178s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-16ubuntu1 [26.3 kB] 178s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.11-0ubuntu2 [282 kB] 179s Get:17 http://ftpmaster.internal/ubuntu plucky/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 179s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 179s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 179s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 179s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 179s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 179s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 179s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 179s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 179s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x mesa-libgallium s390x 25.0.1-2ubuntu1 [8056 kB] 188s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libgbm1 s390x 25.0.1-2ubuntu1 [34.5 kB] 188s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.1-3 [28.2 kB] 188s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 188s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libegl-mesa0 s390x 25.0.1-2ubuntu1 [126 kB] 188s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 188s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1-mesa-dri s390x 25.0.1-2ubuntu1 [35.4 kB] 188s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 188s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 188s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 188s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libglx-mesa0 s390x 25.0.1-2ubuntu1 [161 kB] 188s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 188s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 189s Get:39 http://ftpmaster.internal/ubuntu plucky/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 189s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 189s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 189s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 189s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 189s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 191s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 191s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 191s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 191s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom-common all 2.14.0-1 [103 kB] 191s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom9 s390x 2.14.0-1 [27.1 kB] 191s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libinput-bin s390x 1.27.1-1 [23.3 kB] 191s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libmtdev1t64 s390x 1.1.7-1 [15.6 kB] 191s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libinput10 s390x 1.27.1-1 [139 kB] 191s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 191s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 191s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB] 191s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 192s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 192s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-4ubuntu1 [2242 kB] 194s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-4ubuntu1 [240 kB] 194s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB] 194s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-4ubuntu1 [788 kB] 194s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 194s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB] 195s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-util1 s390x 0.4.1-1 [10.7 kB] 195s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB] 195s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-keysyms1 s390x 0.4.1-1 [8908 B] 195s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 195s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render-util0 s390x 0.3.10-1 [10.3 kB] 195s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B] 195s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B] 195s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB] 195s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB] 195s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libxkbcommon-x11-0 s390x 1.7.0-2 [14.8 kB] 195s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 195s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-4ubuntu1 [4187 kB] 199s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-4ubuntu1 [2718 kB] 201s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-4ubuntu1 [129 kB] 201s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5designer5 s390x 5.15.15-6build1 [2900 kB] 203s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-4ubuntu1 [130 kB] 203s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5help5 s390x 5.15.15-6build1 [172 kB] 203s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 203s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-4ubuntu1 [218 kB] 203s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 204s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x python3-legacy-cgi all 2.6.2-1 [16.6 kB] 204s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 204s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 204s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-opengl all 3.1.7+dfsg-1 [612 kB] 204s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.sip s390x 12.17.0-1build1 [66.5 kB] 204s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-2 [2880 kB] 207s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-2 [140 kB] 207s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol-data all 3.0.0+dfsg-3build2 [1394 kB] 208s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pymol s390x 3.0.0+dfsg-3build2 [4251 kB] 211s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol all 3.0.0+dfsg-3build2 [126 kB] 212s Fetched 47.8 MB in 47s (1022 kB/s) 212s Selecting previously unselected package python3-numpy-dev:s390x. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 212s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_s390x.deb ... 212s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 212s Selecting previously unselected package libblas3:s390x. 212s Preparing to unpack .../01-libblas3_3.12.1-2_s390x.deb ... 212s Unpacking libblas3:s390x (3.12.1-2) ... 212s Selecting previously unselected package libgfortran5:s390x. 212s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 212s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 212s Selecting previously unselected package liblapack3:s390x. 212s Preparing to unpack .../03-liblapack3_3.12.1-2_s390x.deb ... 212s Unpacking liblapack3:s390x (3.12.1-2) ... 212s Selecting previously unselected package python3-numpy. 212s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_s390x.deb ... 212s Unpacking python3-numpy (1:2.2.3+ds-5) ... 212s Selecting previously unselected package libfreetype6:s390x. 212s Preparing to unpack .../05-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 212s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 212s Selecting previously unselected package fonts-dejavu-mono. 212s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 212s Unpacking fonts-dejavu-mono (2.37-8) ... 212s Selecting previously unselected package fonts-dejavu-core. 212s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 212s Unpacking fonts-dejavu-core (2.37-8) ... 212s Selecting previously unselected package fontconfig-config. 212s Preparing to unpack .../08-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 213s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 213s Selecting previously unselected package libfontconfig1:s390x. 213s Preparing to unpack .../09-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 213s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 213s Selecting previously unselected package fontconfig. 213s Preparing to unpack .../10-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 213s Unpacking fontconfig (2.15.0-2ubuntu1) ... 213s Selecting previously unselected package libaec0:s390x. 213s Preparing to unpack .../11-libaec0_1.1.3-1_s390x.deb ... 213s Unpacking libaec0:s390x (1.1.3-1) ... 213s Selecting previously unselected package libavahi-common-data:s390x. 213s Preparing to unpack .../12-libavahi-common-data_0.8-16ubuntu1_s390x.deb ... 213s Unpacking libavahi-common-data:s390x (0.8-16ubuntu1) ... 213s Selecting previously unselected package libavahi-common3:s390x. 213s Preparing to unpack .../13-libavahi-common3_0.8-16ubuntu1_s390x.deb ... 213s Unpacking libavahi-common3:s390x (0.8-16ubuntu1) ... 213s Selecting previously unselected package libavahi-client3:s390x. 213s Preparing to unpack .../14-libavahi-client3_0.8-16ubuntu1_s390x.deb ... 213s Unpacking libavahi-client3:s390x (0.8-16ubuntu1) ... 213s Selecting previously unselected package libcups2t64:s390x. 213s Preparing to unpack .../15-libcups2t64_2.4.11-0ubuntu2_s390x.deb ... 213s Unpacking libcups2t64:s390x (2.4.11-0ubuntu2) ... 213s Selecting previously unselected package libdouble-conversion3:s390x. 213s Preparing to unpack .../16-libdouble-conversion3_3.3.1-1_s390x.deb ... 213s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 213s Selecting previously unselected package libwayland-server0:s390x. 213s Preparing to unpack .../17-libwayland-server0_1.23.1-3_s390x.deb ... 213s Unpacking libwayland-server0:s390x (1.23.1-3) ... 213s Selecting previously unselected package libx11-xcb1:s390x. 213s Preparing to unpack .../18-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 213s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 213s Selecting previously unselected package libxcb-dri3-0:s390x. 213s Preparing to unpack .../19-libxcb-dri3-0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-present0:s390x. 213s Preparing to unpack .../20-libxcb-present0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-present0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-randr0:s390x. 213s Preparing to unpack .../21-libxcb-randr0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-sync1:s390x. 213s Preparing to unpack .../22-libxcb-sync1_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-xfixes0:s390x. 213s Preparing to unpack .../23-libxcb-xfixes0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxshmfence1:s390x. 213s Preparing to unpack .../24-libxshmfence1_1.3-1build5_s390x.deb ... 213s Unpacking libxshmfence1:s390x (1.3-1build5) ... 213s Selecting previously unselected package mesa-libgallium:s390x. 213s Preparing to unpack .../25-mesa-libgallium_25.0.1-2ubuntu1_s390x.deb ... 213s Unpacking mesa-libgallium:s390x (25.0.1-2ubuntu1) ... 213s Selecting previously unselected package libgbm1:s390x. 213s Preparing to unpack .../26-libgbm1_25.0.1-2ubuntu1_s390x.deb ... 213s Unpacking libgbm1:s390x (25.0.1-2ubuntu1) ... 213s Selecting previously unselected package libwayland-client0:s390x. 213s Preparing to unpack .../27-libwayland-client0_1.23.1-3_s390x.deb ... 213s Unpacking libwayland-client0:s390x (1.23.1-3) ... 213s Selecting previously unselected package libxcb-shm0:s390x. 213s Preparing to unpack .../28-libxcb-shm0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libegl-mesa0:s390x. 213s Preparing to unpack .../29-libegl-mesa0_25.0.1-2ubuntu1_s390x.deb ... 213s Unpacking libegl-mesa0:s390x (25.0.1-2ubuntu1) ... 213s Selecting previously unselected package libvulkan1:s390x. 213s Preparing to unpack .../30-libvulkan1_1.4.304.0-1_s390x.deb ... 213s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 213s Selecting previously unselected package libgl1-mesa-dri:s390x. 213s Preparing to unpack .../31-libgl1-mesa-dri_25.0.1-2ubuntu1_s390x.deb ... 213s Unpacking libgl1-mesa-dri:s390x (25.0.1-2ubuntu1) ... 213s Selecting previously unselected package libglvnd0:s390x. 213s Preparing to unpack .../32-libglvnd0_1.7.0-1build1_s390x.deb ... 213s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 213s Selecting previously unselected package libxcb-glx0:s390x. 213s Preparing to unpack .../33-libxcb-glx0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxxf86vm1:s390x. 213s Preparing to unpack .../34-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 213s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 213s Selecting previously unselected package libglx-mesa0:s390x. 213s Preparing to unpack .../35-libglx-mesa0_25.0.1-2ubuntu1_s390x.deb ... 213s Unpacking libglx-mesa0:s390x (25.0.1-2ubuntu1) ... 213s Selecting previously unselected package libglx0:s390x. 213s Preparing to unpack .../36-libglx0_1.7.0-1build1_s390x.deb ... 213s Unpacking libglx0:s390x (1.7.0-1build1) ... 213s Selecting previously unselected package libgl1:s390x. 213s Preparing to unpack .../37-libgl1_1.7.0-1build1_s390x.deb ... 213s Unpacking libgl1:s390x (1.7.0-1build1) ... 213s Selecting previously unselected package libglew2.2:s390x. 213s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_s390x.deb ... 213s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 213s Selecting previously unselected package libgomp1:s390x. 213s Preparing to unpack .../39-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 213s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 213s Selecting previously unselected package libgraphite2-3:s390x. 213s Preparing to unpack .../40-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 213s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 213s Selecting previously unselected package libharfbuzz0b:s390x. 213s Preparing to unpack .../41-libharfbuzz0b_10.2.0-1_s390x.deb ... 213s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 213s Selecting previously unselected package libsz2:s390x. 213s Preparing to unpack .../42-libsz2_1.1.3-1_s390x.deb ... 213s Unpacking libsz2:s390x (1.1.3-1) ... 213s Selecting previously unselected package libhdf5-310:s390x. 213s Preparing to unpack .../43-libhdf5-310_1.14.5+repack-3_s390x.deb ... 213s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 213s Selecting previously unselected package libhdf5-hl-310:s390x. 213s Preparing to unpack .../44-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 213s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 213s Selecting previously unselected package x11-common. 213s Preparing to unpack .../45-x11-common_1%3a7.7+23ubuntu3_all.deb ... 213s Unpacking x11-common (1:7.7+23ubuntu3) ... 213s Selecting previously unselected package libice6:s390x. 213s Preparing to unpack .../46-libice6_2%3a1.1.1-1_s390x.deb ... 213s Unpacking libice6:s390x (2:1.1.1-1) ... 213s Selecting previously unselected package libwacom-common. 213s Preparing to unpack .../47-libwacom-common_2.14.0-1_all.deb ... 213s Unpacking libwacom-common (2.14.0-1) ... 213s Selecting previously unselected package libwacom9:s390x. 213s Preparing to unpack .../48-libwacom9_2.14.0-1_s390x.deb ... 213s Unpacking libwacom9:s390x (2.14.0-1) ... 213s Selecting previously unselected package libinput-bin. 213s Preparing to unpack .../49-libinput-bin_1.27.1-1_s390x.deb ... 213s Unpacking libinput-bin (1.27.1-1) ... 213s Selecting previously unselected package libmtdev1t64:s390x. 213s Preparing to unpack .../50-libmtdev1t64_1.1.7-1_s390x.deb ... 213s Unpacking libmtdev1t64:s390x (1.1.7-1) ... 213s Selecting previously unselected package libinput10:s390x. 213s Preparing to unpack .../51-libinput10_1.27.1-1_s390x.deb ... 213s Unpacking libinput10:s390x (1.27.1-1) ... 213s Selecting previously unselected package libjpeg-turbo8:s390x. 213s Preparing to unpack .../52-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 213s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 213s Selecting previously unselected package libjpeg8:s390x. 213s Preparing to unpack .../53-libjpeg8_8c-2ubuntu11_s390x.deb ... 213s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 213s Selecting previously unselected package libmd4c0:s390x. 213s Preparing to unpack .../54-libmd4c0_0.5.2-2_s390x.deb ... 213s Unpacking libmd4c0:s390x (0.5.2-2) ... 213s Selecting previously unselected package libnetcdf22:s390x. 213s Preparing to unpack .../55-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 213s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 213s Selecting previously unselected package libpcre2-16-0:s390x. 213s Preparing to unpack .../56-libpcre2-16-0_10.45-1_s390x.deb ... 213s Unpacking libpcre2-16-0:s390x (10.45-1) ... 213s Selecting previously unselected package libqt5core5t64:s390x. 213s Preparing to unpack .../57-libqt5core5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 213s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 213s Selecting previously unselected package libqt5dbus5t64:s390x. 213s Preparing to unpack .../58-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 213s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 213s Selecting previously unselected package libegl1:s390x. 213s Preparing to unpack .../59-libegl1_1.7.0-1build1_s390x.deb ... 213s Unpacking libegl1:s390x (1.7.0-1build1) ... 213s Selecting previously unselected package libqt5network5t64:s390x. 213s Preparing to unpack .../60-libqt5network5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 213s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 213s Selecting previously unselected package libsm6:s390x. 213s Preparing to unpack .../61-libsm6_2%3a1.2.4-1_s390x.deb ... 213s Unpacking libsm6:s390x (2:1.2.4-1) ... 213s Selecting previously unselected package libxcb-icccm4:s390x. 213s Preparing to unpack .../62-libxcb-icccm4_0.4.2-1_s390x.deb ... 213s Unpacking libxcb-icccm4:s390x (0.4.2-1) ... 213s Selecting previously unselected package libxcb-util1:s390x. 213s Preparing to unpack .../63-libxcb-util1_0.4.1-1_s390x.deb ... 213s Unpacking libxcb-util1:s390x (0.4.1-1) ... 213s Selecting previously unselected package libxcb-image0:s390x. 213s Preparing to unpack .../64-libxcb-image0_0.4.0-2build1_s390x.deb ... 213s Unpacking libxcb-image0:s390x (0.4.0-2build1) ... 213s Selecting previously unselected package libxcb-keysyms1:s390x. 213s Preparing to unpack .../65-libxcb-keysyms1_0.4.1-1_s390x.deb ... 213s Unpacking libxcb-keysyms1:s390x (0.4.1-1) ... 213s Selecting previously unselected package libxcb-render0:s390x. 213s Preparing to unpack .../66-libxcb-render0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-render0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-render-util0:s390x. 213s Preparing to unpack .../67-libxcb-render-util0_0.3.10-1_s390x.deb ... 213s Unpacking libxcb-render-util0:s390x (0.3.10-1) ... 213s Selecting previously unselected package libxcb-shape0:s390x. 213s Preparing to unpack .../68-libxcb-shape0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-shape0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-xinerama0:s390x. 213s Preparing to unpack .../69-libxcb-xinerama0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-xinerama0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-xinput0:s390x. 213s Preparing to unpack .../70-libxcb-xinput0_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-xinput0:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxcb-xkb1:s390x. 213s Preparing to unpack .../71-libxcb-xkb1_1.17.0-2_s390x.deb ... 213s Unpacking libxcb-xkb1:s390x (1.17.0-2) ... 213s Selecting previously unselected package libxkbcommon-x11-0:s390x. 213s Preparing to unpack .../72-libxkbcommon-x11-0_1.7.0-2_s390x.deb ... 213s Unpacking libxkbcommon-x11-0:s390x (1.7.0-2) ... 213s Selecting previously unselected package libxrender1:s390x. 213s Preparing to unpack .../73-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 213s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 213s Selecting previously unselected package libqt5gui5t64:s390x. 213s Preparing to unpack .../74-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 213s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Selecting previously unselected package libqt5widgets5t64:s390x. 214s Preparing to unpack .../75-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 214s Unpacking libqt5widgets5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Selecting previously unselected package libqt5xml5t64:s390x. 214s Preparing to unpack .../76-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 214s Unpacking libqt5xml5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Selecting previously unselected package libqt5designer5:s390x. 214s Preparing to unpack .../77-libqt5designer5_5.15.15-6build1_s390x.deb ... 214s Unpacking libqt5designer5:s390x (5.15.15-6build1) ... 214s Selecting previously unselected package libqt5sql5t64:s390x. 214s Preparing to unpack .../78-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 214s Unpacking libqt5sql5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Selecting previously unselected package libqt5help5:s390x. 214s Preparing to unpack .../79-libqt5help5_5.15.15-6build1_s390x.deb ... 214s Unpacking libqt5help5:s390x (5.15.15-6build1) ... 214s Selecting previously unselected package libqt5opengl5t64:s390x. 214s Preparing to unpack .../80-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 214s Unpacking libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Selecting previously unselected package libqt5printsupport5t64:s390x. 214s Preparing to unpack .../81-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 214s Unpacking libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Selecting previously unselected package libqt5test5t64:s390x. 214s Preparing to unpack .../82-libqt5test5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 214s Unpacking libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Selecting previously unselected package python3-legacy-cgi. 214s Preparing to unpack .../83-python3-legacy-cgi_2.6.2-1_all.deb ... 214s Unpacking python3-legacy-cgi (2.6.2-1) ... 214s Selecting previously unselected package libopengl0:s390x. 214s Preparing to unpack .../84-libopengl0_1.7.0-1build1_s390x.deb ... 214s Unpacking libopengl0:s390x (1.7.0-1build1) ... 214s Selecting previously unselected package libglu1-mesa:s390x. 214s Preparing to unpack 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.../90-pymol-data_3.0.0+dfsg-3build2_all.deb ... 214s Unpacking pymol-data (3.0.0+dfsg-3build2) ... 214s Selecting previously unselected package python3-pymol. 214s Preparing to unpack .../91-python3-pymol_3.0.0+dfsg-3build2_s390x.deb ... 214s Unpacking python3-pymol (3.0.0+dfsg-3build2) ... 214s Selecting previously unselected package pymol. 214s Preparing to unpack .../92-pymol_3.0.0+dfsg-3build2_all.deb ... 214s Unpacking pymol (3.0.0+dfsg-3build2) ... 214s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 214s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 214s Setting up libwayland-server0:s390x (1.23.1-3) ... 214s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 214s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 214s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 214s Setting up libxcb-xinput0:s390x (1.17.0-2) ... 214s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 214s Setting up libxcb-render0:s390x (1.17.0-2) ... 214s Setting up libglvnd0:s390x (1.7.0-1build1) ... 214s Setting up libxcb-glx0:s390x (1.17.0-2) ... 214s Setting up libxcb-keysyms1:s390x (0.4.1-1) ... 214s Setting up libxcb-shape0:s390x (1.17.0-2) ... 214s Setting up x11-common (1:7.7+23ubuntu3) ... 214s Setting up libxcb-render-util0:s390x (0.3.10-1) ... 214s Setting up libxcb-shm0:s390x (1.17.0-2) ... 214s Setting up libxcb-icccm4:s390x (0.4.2-1) ... 214s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 214s Setting up libpcre2-16-0:s390x (10.45-1) ... 214s Setting up libaec0:s390x (1.1.3-1) ... 214s Setting up libopengl0:s390x (1.7.0-1build1) ... 214s Setting up libxcb-util1:s390x (0.4.1-1) ... 214s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 214s Setting up libxcb-xkb1:s390x (1.17.0-2) ... 214s Setting up libxcb-image0:s390x (0.4.0-2build1) ... 214s Setting up libxcb-present0:s390x (1.17.0-2) ... 214s Setting up libqt5core5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 214s Setting up libblas3:s390x (3.12.1-2) ... 214s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 214s Setting up libxcb-xinerama0:s390x (1.17.0-2) ... 214s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 214s Setting up libxcb-sync1:s390x (1.17.0-2) ... 214s Setting up libavahi-common-data:s390x (0.8-16ubuntu1) ... 214s Setting up pymol-data (3.0.0+dfsg-3build2) ... 214s Setting up libxkbcommon-x11-0:s390x (1.7.0-2) ... 214s Setting up fonts-dejavu-mono (2.37-8) ... 214s Setting up python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 214s Setting up fonts-dejavu-core (2.37-8) ... 214s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 214s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 214s Setting up libvulkan1:s390x (1.4.304.0-1) ... 214s Setting up python3-legacy-cgi (2.6.2-1) ... 215s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 215s Setting up libmtdev1t64:s390x (1.1.7-1) ... 215s Setting up libxshmfence1:s390x (1.3-1build5) ... 215s Setting up libxcb-randr0:s390x (1.17.0-2) ... 215s Setting up libqt5sql5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 215s Setting up libmd4c0:s390x (0.5.2-2) ... 215s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 215s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ... 215s Setting up libsz2:s390x (1.1.3-1) ... 215s Setting up libwacom-common (2.14.0-1) ... 215s Setting up libwayland-client0:s390x (1.23.1-3) ... 215s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 215s Setting up libice6:s390x (2:1.1.1-1) ... 215s Setting up mesa-libgallium:s390x (25.0.1-2ubuntu1) ... 215s Setting up liblapack3:s390x (3.12.1-2) ... 215s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 215s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 215s Setting up libgbm1:s390x (25.0.1-2ubuntu1) ... 215s Setting up libwacom9:s390x (2.14.0-1) ... 215s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 215s Setting up libgl1-mesa-dri:s390x (25.0.1-2ubuntu1) ... 215s Setting up libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 215s Setting up libavahi-common3:s390x (0.8-16ubuntu1) ... 215s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 215s Setting up libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 215s Setting up libinput-bin (1.27.1-1) ... 215s Setting up libegl-mesa0:s390x (25.0.1-2ubuntu1) ... 215s Setting up python3-numpy (1:2.2.3+ds-5) ... 216s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 216s Setting up libegl1:s390x (1.7.0-1build1) ... 216s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 216s Setting up libsm6:s390x (2:1.2.4-1) ... 216s Setting up libavahi-client3:s390x (0.8-16ubuntu1) ... 216s Setting up libinput10:s390x (1.27.1-1) ... 216s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 216s Setting up fontconfig (2.15.0-2ubuntu1) ... 219s Regenerating fonts cache... done. 219s Setting up libglx-mesa0:s390x (25.0.1-2ubuntu1) ... 219s Setting up libglx0:s390x (1.7.0-1build1) ... 219s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 219s Setting up libgl1:s390x (1.7.0-1build1) ... 219s Setting up libglew2.2:s390x (2.2.0-4build1) ... 219s Setting up libcups2t64:s390x (2.4.11-0ubuntu2) ... 219s Setting up python3-opengl (3.1.7+dfsg-1) ... 219s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 219s |\ |\ 219s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 219s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 219s Setting up libqt5help5:s390x (5.15.15-6build1) ... 219s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 219s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 219s Setting up libqt5designer5:s390x (5.15.15-6build1) ... 219s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 219s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 219s Setting up python3-pymol (3.0.0+dfsg-3build2) ... 220s Setting up pymol (3.0.0+dfsg-3build2) ... 220s Processing triggers for libc-bin (2.41-1ubuntu2) ... 220s Processing triggers for man-db (2.13.0-1) ... 220s Processing triggers for udev (257.3-1ubuntu3) ... 221s autopkgtest [12:13:07]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 221s autopkgtest [12:13:07]: test command1: [----------------------- 222s Search pymol scripts in /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples... 222s Processing new directory /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples 222s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/chempy/generate_amber.py'... 222s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/chempy/generate_mmff.py'... 222s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/area_diff.pml'... 223s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/build_peptide.py'... 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/contact.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/dali.py 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/density.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/groel_es.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/multiclip_ray.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/packing.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/packsurf.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/ref_frame.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/ribosome.pml 223s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/scenes2movie.pml 223s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/seq_match_sele.pml'... 227s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/ss_xfer.pml 227s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/symsph.py'... 227s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/brick01.py'... 227s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo01.py'... 227s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo02.py'... 230s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo03.py'... 233s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo04.py'... 234s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo05.py'... 234s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo06.py'... 236s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo07.py'... 236s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo08.py'... 236s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_3Dtext01.py'... 236s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_axes.py'... 236s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_label_hack.py'... 239s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_plane.py'... 240s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/chempy_model01.py'... 240s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/chempy_model02.py'... 240s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/chempy_model03.py'... 243s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/click_ordered_list.py'... 243s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/count_molecules.py'... 243s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/extend_demo01.py'... 243s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/gl01.py'... 244s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/gl02.py'... 244s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/gl03.py'... 247s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/importing.py 247s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/link_demo.py'... 247s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/membrane.py'... 247s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/mutate01.pml'... 248s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/mutate02.py'... 249s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/my_ext_gui.py'... 249s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/particle01.py'... 249s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/particle02.py'... 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/pick_wiz.py'... 250s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/povray01.py 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/scenes_to_movie01.pml'... 250s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/sd_annotate.pml 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/sele_wiz.py'... 250s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/start_pymol.py 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/syncmol.py'... 250s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/tkwindow.py 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/webgui01.py'... 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/webgui02.py'... 250s /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 250s mo = re.search("molid\=([A-Z0-9]+)",self.path) 250s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/xmlrpc01.py 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/xmlrpc02.py'... 250s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/launching/launch_demo.py'... 251s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/launching/launch_viewer1.py'... 251s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/launching/launch_viewer2.py'... 251s Processing new directory /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/chempy 251s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/chempy/generate_amber.py'... 251s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/chempy/generate_mmff.py'... 251s Processing new directory /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook 251s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/area_diff.pml'... 252s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/build_peptide.py'... 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/contact.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/dali.py 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/density.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/groel_es.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/multiclip_ray.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/packing.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/packsurf.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/ref_frame.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/ribosome.pml 252s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/scenes2movie.pml 252s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/seq_match_sele.pml'... 253s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/ss_xfer.pml 253s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/cookbook/symsph.py'... 253s Processing new directory /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel 253s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/brick01.py'... 253s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo01.py'... 253s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo02.py'... 257s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo03.py'... 260s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo04.py'... 260s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo05.py'... 260s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo06.py'... 261s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo07.py'... 261s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo08.py'... 261s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_3Dtext01.py'... 261s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_axes.py'... 261s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_label_hack.py'... 264s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/cgo_plane.py'... 264s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/chempy_model01.py'... 265s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/chempy_model02.py'... 265s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/chempy_model03.py'... 268s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/click_ordered_list.py'... 268s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/count_molecules.py'... 268s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/extend_demo01.py'... 268s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/gl01.py'... 268s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/gl02.py'... 269s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/gl03.py'... 272s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/importing.py 272s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/link_demo.py'... 272s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/membrane.py'... 272s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/mutate01.pml'... 273s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/mutate02.py'... 274s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/my_ext_gui.py'... 274s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/particle01.py'... 274s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/particle02.py'... 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/pick_wiz.py'... 275s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/povray01.py 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/scenes_to_movie01.pml'... 275s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/sd_annotate.pml 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/sele_wiz.py'... 275s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/start_pymol.py 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/syncmol.py'... 275s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/tkwindow.py 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/webgui01.py'... 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/webgui02.py'... 275s /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 275s mo = re.search("molid\=([A-Z0-9]+)",self.path) 275s Skip /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/xmlrpc01.py 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/devel/xmlrpc02.py'... 275s Processing new directory /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/launching 275s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/launching/launch_demo.py'... 276s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/launching/launch_viewer1.py'... 276s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/examples/launching/launch_viewer2.py'... 276s autopkgtest [12:14:02]: test command1: -----------------------] 276s command1 PASS (superficial) 276s autopkgtest [12:14:02]: test command1: - - - - - - - - - - results - - - - - - - - - - 277s autopkgtest [12:14:03]: test command2: preparing testbed 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 277s Starting pkgProblemResolver with broken count: 0 277s Starting 2 pkgProblemResolver with broken count: 0 277s Done 278s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 278s autopkgtest [12:14:04]: test command2: sh debian/tests/call-pymol-scripts data/demo 278s autopkgtest [12:14:04]: test command2: [----------------------- 278s Search pymol scripts in /tmp/autopkgtest.1Gj8fY/build.vUg/src/data/demo... 278s Processing new directory /tmp/autopkgtest.1Gj8fY/build.vUg/src/data/demo 278s Run 'pymol -c /tmp/autopkgtest.1Gj8fY/build.vUg/src/data/demo/cgo03.py'... 282s autopkgtest [12:14:08]: test command2: -----------------------] 282s command2 PASS (superficial) 282s autopkgtest [12:14:08]: test command2: - - - - - - - - - - results - - - - - - - - - - 283s autopkgtest [12:14:09]: test command3: preparing testbed 283s Reading package lists... 283s Building dependency tree... 283s Reading state information... 283s Starting pkgProblemResolver with broken count: 0 283s Starting 2 pkgProblemResolver with broken count: 0 283s Done 283s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 284s autopkgtest [12:14:10]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 284s autopkgtest [12:14:10]: test command3: [----------------------- 284s Search pymol scripts in /usr/share/pymol/examples... 284s Processing new directory /usr/share/pymol/examples 284s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 284s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 284s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 284s Skip /usr/share/pymol/examples/cookbook/contact.pml 284s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 284s Skip /usr/share/pymol/examples/cookbook/packing.pml 284s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 284s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 284s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 284s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 284s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 284s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 285s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 285s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 288s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 291s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 291s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 291s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 292s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 292s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 292s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 292s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 292s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 296s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 296s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 296s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 296s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 300s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 300s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 300s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 303s Skip /usr/share/pymol/examples/devel/importing.py 303s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 303s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 304s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 304s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 305s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 305s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 306s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 306s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 306s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 306s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 306s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 306s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 306s Skip /usr/share/pymol/examples/devel/tkwindow.py 306s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 306s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 306s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 306s mo = re.search("molid\=([A-Z0-9]+)",self.path) 306s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 306s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 307s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 307s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 307s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 307s Processing new directory /usr/share/pymol/examples/chempy 307s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 307s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 307s Processing new directory /usr/share/pymol/examples/cookbook 307s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 307s Skip /usr/share/pymol/examples/cookbook/contact.pml 307s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 307s Skip /usr/share/pymol/examples/cookbook/packing.pml 307s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 307s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 307s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 307s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 307s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 307s Processing new directory /usr/share/pymol/examples/devel 307s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 307s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 307s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 311s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 314s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 314s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 314s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 315s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 318s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 319s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 319s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 319s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 322s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 322s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 322s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 322s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 323s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 323s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 326s Skip /usr/share/pymol/examples/devel/importing.py 326s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 326s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 326s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 327s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 329s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 329s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 329s Skip /usr/share/pymol/examples/devel/tkwindow.py 329s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 329s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 329s mo = re.search("molid\=([A-Z0-9]+)",self.path) 329s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 329s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 329s Processing new directory /usr/share/pymol/examples/launching 329s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 329s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 330s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 330s autopkgtest [12:14:56]: test command3: -----------------------] 330s autopkgtest [12:14:56]: test command3: - - - - - - - - - - results - - - - - - - - - - 330s command3 PASS (superficial) 331s autopkgtest [12:14:57]: test command4: preparing testbed 331s Reading package lists... 331s Building dependency tree... 331s Reading state information... 331s Starting pkgProblemResolver with broken count: 0 331s Starting 2 pkgProblemResolver with broken count: 0 331s Done 331s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 332s autopkgtest [12:14:58]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 332s autopkgtest [12:14:58]: test command4: [----------------------- 332s Search pymol scripts in /usr/share/pymol/examples/cookbook... 332s Processing new directory /usr/share/pymol/examples/cookbook 332s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 333s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 335s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 335s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 337s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 366s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 371s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 371s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 372s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 375s autopkgtest [12:15:41]: test command4: -----------------------] 375s command4 PASS (superficial) 375s autopkgtest [12:15:41]: test command4: - - - - - - - - - - results - - - - - - - - - - 376s autopkgtest [12:15:42]: test command5: preparing testbed 376s Reading package lists... 376s Building dependency tree... 376s Reading state information... 376s Starting pkgProblemResolver with broken count: 0 376s Starting 2 pkgProblemResolver with broken count: 0 376s Done 376s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 377s autopkgtest [12:15:43]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 377s autopkgtest [12:15:43]: test command5: [----------------------- 377s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 377s Copyright (c) Schrodinger, LLC. 377s All Rights Reserved. 377s 377s Created by Warren L. DeLano, Ph.D. 377s 377s PyMOL is user-supported open-source software. Although some versions 377s are freely available, PyMOL is not in the public domain. 377s 377s If PyMOL is helpful in your work or study, then please volunteer 377s support for our ongoing efforts to create open and affordable scientific 377s software by purchasing a PyMOL Maintenance and/or Support subscription. 377s 377s More information can be found at "http://www.pymol.org". 377s 377s Enter "help" for a list of commands. 377s Enter "help " for information on a specific command. 377s 377s Hit ESC anytime to toggle between text and graphics. 377s 377s Setting: wizard_prompt_mode set to 3. 377s Detected 2 CPU cores. Enabled multithreaded rendering. 377s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 377s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 377s PyMOL>wizard annotation 377s PyMOL>set wizard_prompt_mode,3 377s PyMOL>load_annotated_sdf demo.sdf 377s HBA ['[1, 25, 26, 34]\n'] 377s HBD ['[20]\n'] 377s ACD_NUMBER ['MFCD02681585\n'] 377s SCORE ['-222.044\n'] 377s MOLID ['MFCD02681585\n'] 377s HBA ['[1, 21]\n'] 377s HBD ['[]\n'] 377s ACD_NUMBER ['MFCD01567969\n'] 377s SCORE ['-219.984\n'] 377s MOLID ['MFCD01567969\n'] 377s HBA ['[1, 24]\n'] 377s HBD ['[10, 22]\n'] 377s ACD_NUMBER ['MFCD00023789\n'] 377s SCORE ['-219.911\n'] 377s MOLID ['MFCD00023789\n'] 377s HBA ['[1, 11]\n'] 377s HBD ['[3]\n'] 377s ACD_NUMBER ['MFCD02579443\n'] 377s SCORE ['-219.769\n'] 377s MOLID ['MFCD02579443\n'] 377s HBA ['[1, 11]\n'] 377s HBD ['[9]\n'] 377s ACD_NUMBER ['MFCD02579410\n'] 377s SCORE ['-214.809\n'] 377s MOLID ['MFCD02579410\n'] 377s HBA ['[1, 20, 22, 27, 32]\n'] 377s HBD ['[10, 20]\n'] 377s ACD_NUMBER ['MFCD02579135\n'] 377s SCORE ['-213.630\n'] 377s MOLID ['MFCD02579135\n'] 377s HBA ['[1, 11, 14, 21]\n'] 377s HBD ['[]\n'] 377s ACD_NUMBER ['MFCD02681468\n'] 377s SCORE ['-213.462\n'] 377s MOLID ['MFCD02681468\n'] 377s HBA ['[1, 13, 14, 29]\n'] 377s HBD ['[]\n'] 377s ACD_NUMBER ['MFCD00141070\n'] 377s SCORE ['-213.240\n'] 377s MOLID ['MFCD00141070\n'] 377s HBA ['[1, 8]\n'] 377s HBD ['[]\n'] 377s ACD_NUMBER ['MFCD02983625\n'] 377s SCORE ['-211.422\n'] 377s MOLID ['MFCD02983625\n'] 377s HBA ['[1, 11]\n'] 377s HBD ['[3, 12]\n'] 377s ACD_NUMBER ['MFCD00115818\n'] 377s SCORE ['-210.482\n'] 377s MOLID ['MFCD00115818\n'] 378s autopkgtest [12:15:44]: test command5: -----------------------] 378s command5 PASS (superficial) 378s autopkgtest [12:15:44]: test command5: - - - - - - - - - - results - - - - - - - - - - 378s autopkgtest [12:15:44]: @@@@@@@@@@@@@@@@@@@@ summary 378s command1 PASS (superficial) 378s command2 PASS (superficial) 378s command3 PASS (superficial) 378s command4 PASS (superficial) 378s command5 PASS (superficial) 396s nova [W] Using flock in prodstack6-s390x 396s Creating nova instance adt-plucky-s390x-pymol-20250315-115535-juju-7f2275-prod-proposed-migration-environment-20-4e2cbbaf-9099-4a13-be0f-d1a2a2fabed6 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 396s nova [W] Timed out waiting for 8965e8ac-3a85-438d-a5a1-44ce0d24cca1 to get deleted.