0s autopkgtest [01:52:05]: starting date and time: 2025-02-16 01:52:05+0000 0s autopkgtest [01:52:05]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:52:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5n7lozmm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-15.secgroup --name adt-plucky-s390x-pymol-20250216-015205-juju-7f2275-prod-proposed-migration-environment-2-38ba2f9b-d33a-4a33-98b7-7a41063d5887 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 116s autopkgtest [01:54:01]: testbed dpkg architecture: s390x 116s autopkgtest [01:54:01]: testbed apt version: 2.9.28 116s autopkgtest [01:54:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 116s autopkgtest [01:54:01]: testbed release detected to be: None 117s autopkgtest [01:54:02]: updating testbed package index (apt update) 118s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 118s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 118s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 118s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [842 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.1 kB] 118s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.0 kB] 118s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 118s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [166 kB] 118s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B] 118s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [871 kB] 118s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3740 B] 119s Fetched 2083 kB in 1s (2163 kB/s) 119s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s The following packages were automatically installed and are no longer required: 120s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 120s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 120s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 120s linux-tools-6.11.0-8-generic 120s Use 'sudo apt autoremove' to remove them. 120s The following packages will be upgraded: 120s dash gcc-14-base libatomic1 libgcc-s1 libp11-kit0 libstdc++6 libtasn1-6 120s libxdmcp6 120s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 1471 kB of archives. 120s After this operation, 24.6 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x dash s390x 0.5.12-12ubuntu1 [100 kB] 120s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libatomic1 s390x 14.2.0-17ubuntu1 [9430 B] 120s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-base s390x 14.2.0-17ubuntu1 [53.5 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++6 s390x 14.2.0-17ubuntu1 [896 kB] 121s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-s1 s390x 14.2.0-17ubuntu1 [35.9 kB] 121s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libp11-kit0 s390x 0.25.5-2ubuntu2 [316 kB] 121s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libtasn1-6 s390x 4.20.0-2 [48.6 kB] 121s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libxdmcp6 s390x 1:1.1.5-1 [11.0 kB] 121s Preconfiguring packages ... 121s Fetched 1471 kB in 1s (2356 kB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80969 files and directories currently installed.) 121s Preparing to unpack .../dash_0.5.12-12ubuntu1_s390x.deb ... 121s Unpacking dash (0.5.12-12ubuntu1) over (0.5.12-9ubuntu1) ... 121s Setting up dash (0.5.12-12ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80969 files and directories currently installed.) 121s Preparing to unpack .../libatomic1_14.2.0-17ubuntu1_s390x.deb ... 121s Unpacking libatomic1:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 121s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu1_s390x.deb ... 121s Unpacking gcc-14-base:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 121s Setting up gcc-14-base:s390x (14.2.0-17ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80969 files and directories currently installed.) 121s Preparing to unpack .../libstdc++6_14.2.0-17ubuntu1_s390x.deb ... 121s Unpacking libstdc++6:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 121s Setting up libstdc++6:s390x (14.2.0-17ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80969 files and directories currently installed.) 121s Preparing to unpack .../libgcc-s1_14.2.0-17ubuntu1_s390x.deb ... 121s Unpacking libgcc-s1:s390x (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 121s Setting up libgcc-s1:s390x (14.2.0-17ubuntu1) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80969 files and directories currently installed.) 121s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu2_s390x.deb ... 121s Unpacking libp11-kit0:s390x (0.25.5-2ubuntu2) over (0.25.5-2ubuntu1) ... 121s Preparing to unpack .../libtasn1-6_4.20.0-2_s390x.deb ... 121s Unpacking libtasn1-6:s390x (4.20.0-2) over (4.19.0-3build1) ... 121s Preparing to unpack .../libxdmcp6_1%3a1.1.5-1_s390x.deb ... 121s Unpacking libxdmcp6:s390x (1:1.1.5-1) over (1:1.1.3-0ubuntu6) ... 121s Setting up libxdmcp6:s390x (1:1.1.5-1) ... 121s Setting up libp11-kit0:s390x (0.25.5-2ubuntu2) ... 121s Setting up libatomic1:s390x (14.2.0-17ubuntu1) ... 121s Setting up libtasn1-6:s390x (4.20.0-2) ... 121s Processing triggers for libc-bin (2.40-4ubuntu1) ... 121s Processing triggers for man-db (2.13.0-1) ... 122s Processing triggers for debianutils (5.21) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s The following packages will be REMOVED: 122s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 122s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 122s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 122s linux-tools-6.11.0-8-generic* 122s 0 upgraded, 0 newly installed, 9 to remove and 6 not upgraded. 122s After this operation, 167 MB disk space will be freed. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80969 files and directories currently installed.) 123s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 123s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 123s Removing libpython3.12t64:s390x (3.12.9-1) ... 123s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 123s Removing libnsl2:s390x (1.3.0-3build3) ... 123s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 123s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 123s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 124s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 124s Processing triggers for libc-bin (2.40-4ubuntu1) ... 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55869 files and directories currently installed.) 124s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 124s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 124s autopkgtest [01:54:09]: upgrading testbed (apt dist-upgrade and autopurge) 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 124s Starting 2 pkgProblemResolver with broken count: 0 124s Done 125s Entering ResolveByKeep 125s 125s The following packages will be upgraded: 125s iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales 125s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Need to get 10.7 MB of archives. 125s After this operation, 305 kB of additional disk space will be used. 125s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu1 [24.3 kB] 125s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu1 [1679 kB] 125s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu1 [4246 kB] 126s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu1 [2891 kB] 126s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu1 [672 kB] 126s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x iproute2 s390x 6.13.0-1ubuntu1 [1174 kB] 126s Preconfiguring packages ... 126s Fetched 10.7 MB in 1s (10.1 MB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55867 files and directories currently installed.) 126s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_s390x.deb ... 126s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 126s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_s390x.deb ... 126s Unpacking libc6-dev:s390x (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 126s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 126s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 126s Preparing to unpack .../libc6_2.41-1ubuntu1_s390x.deb ... 126s Checking for services that may need to be restarted... 126s Checking init scripts... 126s Checking for services that may need to be restarted... 126s Checking init scripts... 126s Stopping some services possibly affected by the upgrade (will be restarted later): 126s cron: stopping...done. 126s 126s Unpacking libc6:s390x (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 127s Setting up libc6:s390x (2.41-1ubuntu1) ... 127s Checking for services that may need to be restarted... 127s Checking init scripts... 127s Restarting services possibly affected by the upgrade: 127s cron: restarting...done. 127s 127s Services restarted successfully. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55868 files and directories currently installed.) 127s Preparing to unpack .../libc-bin_2.41-1ubuntu1_s390x.deb ... 127s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 127s Setting up libc-bin (2.41-1ubuntu1) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55868 files and directories currently installed.) 127s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_s390x.deb ... 127s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 127s Setting up iproute2 (6.13.0-1ubuntu1) ... 127s Setting up locales (2.41-1ubuntu1) ... 127s Installing new version of config file /etc/locale.alias ... 127s Generating locales (this might take a while)... 128s en_US.UTF-8... done 128s Generation complete. 128s Setting up libc-dev-bin (2.41-1ubuntu1) ... 128s Setting up libc6-dev:s390x (2.41-1ubuntu1) ... 128s Processing triggers for man-db (2.13.0-1) ... 129s Processing triggers for systemd (257.2-3ubuntu1) ... 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Starting pkgProblemResolver with broken count: 0 130s Starting 2 pkgProblemResolver with broken count: 0 130s Done 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s autopkgtest [01:54:16]: rebooting testbed after setup commands that affected boot 149s autopkgtest [01:54:34]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 15:05:57 UTC 2025 152s autopkgtest [01:54:37]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 156s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3 (dsc) [2325 B] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3 (tar) [22.0 MB] 156s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3 (diff) [57.7 kB] 156s gpgv: Signature made Mon Feb 3 00:17:56 2025 UTC 156s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 156s gpgv: issuer "tchet@debian.org" 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-3.dsc: no acceptable signature found 157s autopkgtest [01:54:42]: testing package pymol version 3.0.0+dfsg-3 158s autopkgtest [01:54:43]: build not needed 161s autopkgtest [01:54:46]: test command1: preparing testbed 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Starting pkgProblemResolver with broken count: 0 162s Starting 2 pkgProblemResolver with broken count: 0 162s Done 162s The following NEW packages will be installed: 162s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 162s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 162s libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 162s libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 162s libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 162s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6 libinput-bin 162s libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 162s libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 162s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 162s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 162s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 162s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 162s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 162s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 162s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 162s libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium 162s pymol pymol-data python3-legacy-cgi python3-numpy python3-opengl 162s python3-pymol python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip 162s x11-common 162s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 51.5 MB of archives. 162s After this operation, 202 MB of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 163s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 163s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 163s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 163s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 163s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB] 163s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 163s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-14ubuntu1 [30.5 kB] 163s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-14ubuntu1 [23.6 kB] 163s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-14ubuntu1 [26.8 kB] 163s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 163s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.11-0ubuntu2 [282 kB] 163s Get:13 http://ftpmaster.internal/ubuntu plucky/universe s390x libdouble-conversion3 s390x 3.3.0-1build1 [43.9 kB] 163s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdrm-radeon1 s390x 2.4.123-1 [22.4 kB] 163s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-server0 s390x 1.23.1-1 [36.8 kB] 163s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libglapi-mesa s390x 24.3.4-3ubuntu1 [68.4 kB] 163s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 163s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 163s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 163s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 163s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 163s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 163s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 163s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x mesa-libgallium s390x 24.3.4-3ubuntu1 [7967 kB] 163s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libgbm1 s390x 24.3.4-3ubuntu1 [34.5 kB] 163s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.1-1 [27.8 kB] 163s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 163s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libegl-mesa0 s390x 24.3.4-3ubuntu1 [126 kB] 163s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-17ubuntu1 [588 kB] 163s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 163s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1-mesa-dri s390x 24.3.4-3ubuntu1 [35.3 kB] 163s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 163s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 163s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 163s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libglx-mesa0 s390x 24.3.4-3ubuntu1 [162 kB] 163s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 163s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 163s Get:38 http://ftpmaster.internal/ubuntu plucky/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 163s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-17ubuntu1 [151 kB] 163s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 163s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 163s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 163s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 163s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 163s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 164s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 164s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom-common all 2.14.0-1 [103 kB] 164s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom9 s390x 2.14.0-1 [27.1 kB] 164s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libinput-bin s390x 1.27.1-1 [23.3 kB] 164s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libmtdev1t64 s390x 1.1.7-1 [15.6 kB] 164s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libinput10 s390x 1.27.1-1 [139 kB] 164s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 164s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 164s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 164s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB] 164s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf19t64 s390x 1:4.9.2-6ubuntu2 [497 kB] 164s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.42-4ubuntu3 [236 kB] 164s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-1ubuntu2 [2243 kB] 164s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-1ubuntu2 [240 kB] 164s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB] 164s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-1ubuntu2 [788 kB] 164s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 164s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB] 164s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-util1 s390x 0.4.1-1 [10.7 kB] 164s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB] 164s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-keysyms1 s390x 0.4.1-1 [8908 B] 164s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 164s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render-util0 s390x 0.3.10-1 [10.3 kB] 164s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B] 164s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B] 164s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB] 164s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB] 164s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libxkbcommon-x11-0 s390x 1.7.0-2 [14.8 kB] 164s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 164s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-1ubuntu2 [4187 kB] 164s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-1ubuntu2 [2718 kB] 164s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-1ubuntu2 [129 kB] 164s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5designer5 s390x 5.15.15-6 [2899 kB] 164s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-1ubuntu2 [130 kB] 164s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5help5 s390x 5.15.15-6 [172 kB] 164s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-1ubuntu2 [156 kB] 164s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-1ubuntu2 [218 kB] 164s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-1ubuntu2 [155 kB] 164s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x python3-legacy-cgi all 2.6.1-2 [16.3 kB] 164s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-13 [4601 kB] 165s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 165s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 165s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-opengl all 3.1.7+dfsg-1 [612 kB] 165s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.sip s390x 12.17.0-1 [69.3 kB] 165s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-1build2 [2878 kB] 165s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-1build2 [140 kB] 165s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol-data all 3.0.0+dfsg-3 [1394 kB] 165s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pymol s390x 3.0.0+dfsg-3 [7964 kB] 165s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol all 3.0.0+dfsg-3 [126 kB] 166s Fetched 51.5 MB in 3s (17.1 MB/s) 166s Selecting previously unselected package libfreetype6:s390x. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55869 files and directories currently installed.) 166s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 166s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 166s Selecting previously unselected package fonts-dejavu-mono. 166s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 166s Unpacking fonts-dejavu-mono (2.37-8) ... 166s Selecting previously unselected package fonts-dejavu-core. 166s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 166s Unpacking fonts-dejavu-core (2.37-8) ... 166s Selecting previously unselected package fontconfig-config. 166s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 166s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 166s Selecting previously unselected package libfontconfig1:s390x. 166s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 166s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 166s Selecting previously unselected package fontconfig. 166s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ... 166s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 166s Selecting previously unselected package libaec0:s390x. 166s Preparing to unpack .../06-libaec0_1.1.3-1_s390x.deb ... 166s Unpacking libaec0:s390x (1.1.3-1) ... 166s Selecting previously unselected package libavahi-common-data:s390x. 166s Preparing to unpack .../07-libavahi-common-data_0.8-14ubuntu1_s390x.deb ... 166s Unpacking libavahi-common-data:s390x (0.8-14ubuntu1) ... 166s Selecting previously unselected package libavahi-common3:s390x. 166s Preparing to unpack .../08-libavahi-common3_0.8-14ubuntu1_s390x.deb ... 166s Unpacking libavahi-common3:s390x (0.8-14ubuntu1) ... 166s Selecting previously unselected package libavahi-client3:s390x. 166s Preparing to unpack .../09-libavahi-client3_0.8-14ubuntu1_s390x.deb ... 166s Unpacking libavahi-client3:s390x (0.8-14ubuntu1) ... 166s Selecting previously unselected package libblas3:s390x. 166s Preparing to unpack .../10-libblas3_3.12.1-2_s390x.deb ... 166s Unpacking libblas3:s390x (3.12.1-2) ... 166s Selecting previously unselected package libcups2t64:s390x. 166s Preparing to unpack .../11-libcups2t64_2.4.11-0ubuntu2_s390x.deb ... 166s Unpacking libcups2t64:s390x (2.4.11-0ubuntu2) ... 166s Selecting previously unselected package libdouble-conversion3:s390x. 166s Preparing to unpack .../12-libdouble-conversion3_3.3.0-1build1_s390x.deb ... 166s Unpacking libdouble-conversion3:s390x (3.3.0-1build1) ... 166s Selecting previously unselected package libdrm-radeon1:s390x. 166s Preparing to unpack .../13-libdrm-radeon1_2.4.123-1_s390x.deb ... 166s Unpacking libdrm-radeon1:s390x (2.4.123-1) ... 166s Selecting previously unselected package libwayland-server0:s390x. 166s Preparing to unpack .../14-libwayland-server0_1.23.1-1_s390x.deb ... 166s Unpacking libwayland-server0:s390x (1.23.1-1) ... 166s Selecting previously unselected package libglapi-mesa:s390x. 166s Preparing to unpack .../15-libglapi-mesa_24.3.4-3ubuntu1_s390x.deb ... 166s Unpacking libglapi-mesa:s390x (24.3.4-3ubuntu1) ... 166s Selecting previously unselected package libx11-xcb1:s390x. 166s Preparing to unpack .../16-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 166s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 166s Selecting previously unselected package libxcb-dri3-0:s390x. 166s Preparing to unpack .../17-libxcb-dri3-0_1.17.0-2_s390x.deb ... 166s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 166s Selecting previously unselected package libxcb-present0:s390x. 166s Preparing to unpack .../18-libxcb-present0_1.17.0-2_s390x.deb ... 166s Unpacking libxcb-present0:s390x (1.17.0-2) ... 166s Selecting previously unselected package libxcb-randr0:s390x. 166s Preparing to unpack .../19-libxcb-randr0_1.17.0-2_s390x.deb ... 166s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 166s Selecting previously unselected package libxcb-sync1:s390x. 166s Preparing to unpack .../20-libxcb-sync1_1.17.0-2_s390x.deb ... 166s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 166s Selecting previously unselected package libxcb-xfixes0:s390x. 166s Preparing to unpack .../21-libxcb-xfixes0_1.17.0-2_s390x.deb ... 166s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 166s Selecting previously unselected package libxshmfence1:s390x. 166s Preparing to unpack .../22-libxshmfence1_1.3-1build5_s390x.deb ... 166s Unpacking libxshmfence1:s390x (1.3-1build5) ... 166s Selecting previously unselected package mesa-libgallium:s390x. 166s Preparing to unpack .../23-mesa-libgallium_24.3.4-3ubuntu1_s390x.deb ... 166s Unpacking mesa-libgallium:s390x (24.3.4-3ubuntu1) ... 166s Selecting previously unselected package libgbm1:s390x. 166s Preparing to unpack .../24-libgbm1_24.3.4-3ubuntu1_s390x.deb ... 166s Unpacking libgbm1:s390x (24.3.4-3ubuntu1) ... 166s Selecting previously unselected package libwayland-client0:s390x. 166s Preparing to unpack .../25-libwayland-client0_1.23.1-1_s390x.deb ... 166s Unpacking libwayland-client0:s390x (1.23.1-1) ... 166s Selecting previously unselected package libxcb-shm0:s390x. 166s Preparing to unpack .../26-libxcb-shm0_1.17.0-2_s390x.deb ... 166s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 166s Selecting previously unselected package libegl-mesa0:s390x. 166s Preparing to unpack .../27-libegl-mesa0_24.3.4-3ubuntu1_s390x.deb ... 166s Unpacking libegl-mesa0:s390x (24.3.4-3ubuntu1) ... 166s Selecting previously unselected package libgfortran5:s390x. 166s Preparing to unpack .../28-libgfortran5_14.2.0-17ubuntu1_s390x.deb ... 166s Unpacking libgfortran5:s390x (14.2.0-17ubuntu1) ... 166s Selecting previously unselected package libvulkan1:s390x. 166s Preparing to unpack .../29-libvulkan1_1.4.304.0-1_s390x.deb ... 166s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 166s Selecting previously unselected package libgl1-mesa-dri:s390x. 166s Preparing to unpack .../30-libgl1-mesa-dri_24.3.4-3ubuntu1_s390x.deb ... 166s Unpacking libgl1-mesa-dri:s390x (24.3.4-3ubuntu1) ... 166s Selecting previously unselected package libglvnd0:s390x. 166s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_s390x.deb ... 166s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 166s Selecting previously unselected package libxcb-glx0:s390x. 166s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_s390x.deb ... 166s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 166s Selecting previously unselected package libxxf86vm1:s390x. 166s Preparing to unpack .../33-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 166s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 166s Selecting previously unselected package libglx-mesa0:s390x. 166s Preparing to unpack .../34-libglx-mesa0_24.3.4-3ubuntu1_s390x.deb ... 166s Unpacking libglx-mesa0:s390x (24.3.4-3ubuntu1) ... 166s Selecting previously unselected package libglx0:s390x. 166s Preparing to unpack .../35-libglx0_1.7.0-1build1_s390x.deb ... 166s Unpacking libglx0:s390x (1.7.0-1build1) ... 166s Selecting previously unselected package libgl1:s390x. 166s Preparing to unpack .../36-libgl1_1.7.0-1build1_s390x.deb ... 166s Unpacking libgl1:s390x (1.7.0-1build1) ... 166s Selecting previously unselected package libglew2.2:s390x. 166s Preparing to unpack .../37-libglew2.2_2.2.0-4build1_s390x.deb ... 166s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 166s Selecting previously unselected package libgomp1:s390x. 166s Preparing to unpack .../38-libgomp1_14.2.0-17ubuntu1_s390x.deb ... 166s Unpacking libgomp1:s390x (14.2.0-17ubuntu1) ... 166s Selecting previously unselected package libgraphite2-3:s390x. 166s Preparing to unpack .../39-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 166s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 166s Selecting previously unselected package libharfbuzz0b:s390x. 166s Preparing to unpack .../40-libharfbuzz0b_10.2.0-1_s390x.deb ... 166s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 166s Selecting previously unselected package libsz2:s390x. 166s Preparing to unpack .../41-libsz2_1.1.3-1_s390x.deb ... 166s Unpacking libsz2:s390x (1.1.3-1) ... 166s Selecting previously unselected package libhdf5-310:s390x. 166s Preparing to unpack .../42-libhdf5-310_1.14.5+repack-3_s390x.deb ... 166s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 166s Selecting previously unselected package libhdf5-hl-310:s390x. 166s Preparing to unpack .../43-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 166s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 166s Selecting previously unselected package x11-common. 166s Preparing to unpack .../44-x11-common_1%3a7.7+23ubuntu3_all.deb ... 166s Unpacking x11-common (1:7.7+23ubuntu3) ... 166s Selecting previously unselected package libice6:s390x. 166s Preparing to unpack .../45-libice6_2%3a1.1.1-1_s390x.deb ... 166s Unpacking libice6:s390x (2:1.1.1-1) ... 166s Selecting previously unselected package libwacom-common. 166s Preparing to unpack .../46-libwacom-common_2.14.0-1_all.deb ... 166s Unpacking libwacom-common (2.14.0-1) ... 166s Selecting previously unselected package libwacom9:s390x. 167s Preparing to unpack .../47-libwacom9_2.14.0-1_s390x.deb ... 167s Unpacking libwacom9:s390x (2.14.0-1) ... 167s Selecting previously unselected package libinput-bin. 167s Preparing to unpack .../48-libinput-bin_1.27.1-1_s390x.deb ... 167s Unpacking libinput-bin (1.27.1-1) ... 167s Selecting previously unselected package libmtdev1t64:s390x. 167s Preparing to unpack .../49-libmtdev1t64_1.1.7-1_s390x.deb ... 167s Unpacking libmtdev1t64:s390x (1.1.7-1) ... 167s Selecting previously unselected package libinput10:s390x. 167s Preparing to unpack .../50-libinput10_1.27.1-1_s390x.deb ... 167s Unpacking libinput10:s390x (1.27.1-1) ... 167s Selecting previously unselected package libjpeg-turbo8:s390x. 167s Preparing to unpack .../51-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 167s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 167s Selecting previously unselected package libjpeg8:s390x. 167s Preparing to unpack .../52-libjpeg8_8c-2ubuntu11_s390x.deb ... 167s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 167s Selecting previously unselected package liblapack3:s390x. 167s Preparing to unpack .../53-liblapack3_3.12.1-2_s390x.deb ... 167s Unpacking liblapack3:s390x (3.12.1-2) ... 167s Selecting previously unselected package libmd4c0:s390x. 167s Preparing to unpack .../54-libmd4c0_0.5.2-2_s390x.deb ... 167s Unpacking libmd4c0:s390x (0.5.2-2) ... 167s Selecting previously unselected package libnetcdf19t64:s390x. 167s Preparing to unpack .../55-libnetcdf19t64_1%3a4.9.2-6ubuntu2_s390x.deb ... 167s Unpacking libnetcdf19t64:s390x (1:4.9.2-6ubuntu2) ... 167s Selecting previously unselected package libpcre2-16-0:s390x. 167s Preparing to unpack .../56-libpcre2-16-0_10.42-4ubuntu3_s390x.deb ... 167s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu3) ... 167s Selecting previously unselected package libqt5core5t64:s390x. 167s Preparing to unpack .../57-libqt5core5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libqt5dbus5t64:s390x. 167s Preparing to unpack .../58-libqt5dbus5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libegl1:s390x. 167s Preparing to unpack .../59-libegl1_1.7.0-1build1_s390x.deb ... 167s Unpacking libegl1:s390x (1.7.0-1build1) ... 167s Selecting previously unselected package libqt5network5t64:s390x. 167s Preparing to unpack .../60-libqt5network5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libsm6:s390x. 167s Preparing to unpack .../61-libsm6_2%3a1.2.4-1_s390x.deb ... 167s Unpacking libsm6:s390x (2:1.2.4-1) ... 167s Selecting previously unselected package libxcb-icccm4:s390x. 167s Preparing to unpack .../62-libxcb-icccm4_0.4.2-1_s390x.deb ... 167s Unpacking libxcb-icccm4:s390x (0.4.2-1) ... 167s Selecting previously unselected package libxcb-util1:s390x. 167s Preparing to unpack .../63-libxcb-util1_0.4.1-1_s390x.deb ... 167s Unpacking libxcb-util1:s390x (0.4.1-1) ... 167s Selecting previously unselected package libxcb-image0:s390x. 167s Preparing to unpack .../64-libxcb-image0_0.4.0-2build1_s390x.deb ... 167s Unpacking libxcb-image0:s390x (0.4.0-2build1) ... 167s Selecting previously unselected package libxcb-keysyms1:s390x. 167s Preparing to unpack .../65-libxcb-keysyms1_0.4.1-1_s390x.deb ... 167s Unpacking libxcb-keysyms1:s390x (0.4.1-1) ... 167s Selecting previously unselected package libxcb-render0:s390x. 167s Preparing to unpack .../66-libxcb-render0_1.17.0-2_s390x.deb ... 167s Unpacking libxcb-render0:s390x (1.17.0-2) ... 167s Selecting previously unselected package libxcb-render-util0:s390x. 167s Preparing to unpack .../67-libxcb-render-util0_0.3.10-1_s390x.deb ... 167s Unpacking libxcb-render-util0:s390x (0.3.10-1) ... 167s Selecting previously unselected package libxcb-shape0:s390x. 167s Preparing to unpack .../68-libxcb-shape0_1.17.0-2_s390x.deb ... 167s Unpacking libxcb-shape0:s390x (1.17.0-2) ... 167s Selecting previously unselected package libxcb-xinerama0:s390x. 167s Preparing to unpack .../69-libxcb-xinerama0_1.17.0-2_s390x.deb ... 167s Unpacking libxcb-xinerama0:s390x (1.17.0-2) ... 167s Selecting previously unselected package libxcb-xinput0:s390x. 167s Preparing to unpack .../70-libxcb-xinput0_1.17.0-2_s390x.deb ... 167s Unpacking libxcb-xinput0:s390x (1.17.0-2) ... 167s Selecting previously unselected package libxcb-xkb1:s390x. 167s Preparing to unpack .../71-libxcb-xkb1_1.17.0-2_s390x.deb ... 167s Unpacking libxcb-xkb1:s390x (1.17.0-2) ... 167s Selecting previously unselected package libxkbcommon-x11-0:s390x. 167s Preparing to unpack .../72-libxkbcommon-x11-0_1.7.0-2_s390x.deb ... 167s Unpacking libxkbcommon-x11-0:s390x (1.7.0-2) ... 167s Selecting previously unselected package libxrender1:s390x. 167s Preparing to unpack .../73-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 167s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 167s Selecting previously unselected package libqt5gui5t64:s390x. 167s Preparing to unpack .../74-libqt5gui5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libqt5widgets5t64:s390x. 167s Preparing to unpack .../75-libqt5widgets5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libqt5xml5t64:s390x. 167s Preparing to unpack .../76-libqt5xml5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libqt5designer5:s390x. 167s Preparing to unpack .../77-libqt5designer5_5.15.15-6_s390x.deb ... 167s Unpacking libqt5designer5:s390x (5.15.15-6) ... 167s Selecting previously unselected package libqt5sql5t64:s390x. 167s Preparing to unpack .../78-libqt5sql5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5sql5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libqt5help5:s390x. 167s Preparing to unpack .../79-libqt5help5_5.15.15-6_s390x.deb ... 167s Unpacking libqt5help5:s390x (5.15.15-6) ... 167s Selecting previously unselected package libqt5opengl5t64:s390x. 167s Preparing to unpack .../80-libqt5opengl5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5opengl5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libqt5printsupport5t64:s390x. 167s Preparing to unpack .../81-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5printsupport5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package libqt5test5t64:s390x. 167s Preparing to unpack .../82-libqt5test5t64_5.15.15+dfsg-1ubuntu2_s390x.deb ... 167s Unpacking libqt5test5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 167s Selecting previously unselected package python3-legacy-cgi. 167s Preparing to unpack .../83-python3-legacy-cgi_2.6.1-2_all.deb ... 167s Unpacking python3-legacy-cgi (2.6.1-2) ... 167s Selecting previously unselected package python3-numpy. 167s Preparing to unpack .../84-python3-numpy_1%3a1.26.4+ds-13_s390x.deb ... 167s Unpacking python3-numpy (1:1.26.4+ds-13) ... 167s Selecting previously unselected package libopengl0:s390x. 167s Preparing to unpack .../85-libopengl0_1.7.0-1build1_s390x.deb ... 167s Unpacking libopengl0:s390x (1.7.0-1build1) ... 167s Selecting previously unselected package libglu1-mesa:s390x. 167s Preparing to unpack .../86-libglu1-mesa_9.0.2-1.1build1_s390x.deb ... 167s Unpacking libglu1-mesa:s390x (9.0.2-1.1build1) ... 167s Selecting previously unselected package python3-opengl. 167s Preparing to unpack .../87-python3-opengl_3.1.7+dfsg-1_all.deb ... 167s Unpacking python3-opengl (3.1.7+dfsg-1) ... 167s Selecting previously unselected package python3-pyqt5.sip. 167s Preparing to unpack .../88-python3-pyqt5.sip_12.17.0-1_s390x.deb ... 167s Unpacking python3-pyqt5.sip (12.17.0-1) ... 167s Selecting previously unselected package python3-pyqt5. 167s Preparing to unpack .../89-python3-pyqt5_5.15.11+dfsg-1build2_s390x.deb ... 167s Unpacking python3-pyqt5 (5.15.11+dfsg-1build2) ... 167s Selecting previously unselected package python3-pyqt5.qtopengl. 167s Preparing to unpack .../90-python3-pyqt5.qtopengl_5.15.11+dfsg-1build2_s390x.deb ... 167s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build2) ... 167s Selecting previously unselected package pymol-data. 167s Preparing to unpack .../91-pymol-data_3.0.0+dfsg-3_all.deb ... 167s Unpacking pymol-data (3.0.0+dfsg-3) ... 168s Selecting previously unselected package python3-pymol. 168s Preparing to unpack .../92-python3-pymol_3.0.0+dfsg-3_s390x.deb ... 168s Unpacking python3-pymol (3.0.0+dfsg-3) ... 168s Selecting previously unselected package pymol. 168s Preparing to unpack .../93-pymol_3.0.0+dfsg-3_all.deb ... 168s Unpacking pymol (3.0.0+dfsg-3) ... 168s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 168s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 168s Setting up libwayland-server0:s390x (1.23.1-1) ... 168s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 168s Setting up libdouble-conversion3:s390x (3.3.0-1build1) ... 168s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 168s Setting up libxcb-xinput0:s390x (1.17.0-2) ... 168s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 168s Setting up libxcb-render0:s390x (1.17.0-2) ... 168s Setting up libdrm-radeon1:s390x (2.4.123-1) ... 168s Setting up libglvnd0:s390x (1.7.0-1build1) ... 168s Setting up libxcb-glx0:s390x (1.17.0-2) ... 168s Setting up libxcb-keysyms1:s390x (0.4.1-1) ... 168s Setting up libxcb-shape0:s390x (1.17.0-2) ... 168s Setting up x11-common (1:7.7+23ubuntu3) ... 168s Setting up libxcb-render-util0:s390x (0.3.10-1) ... 168s Setting up libxcb-shm0:s390x (1.17.0-2) ... 168s Setting up libxcb-icccm4:s390x (0.4.2-1) ... 168s Setting up libgomp1:s390x (14.2.0-17ubuntu1) ... 168s Setting up libpcre2-16-0:s390x (10.42-4ubuntu3) ... 168s Setting up libaec0:s390x (1.1.3-1) ... 168s Setting up libopengl0:s390x (1.7.0-1build1) ... 168s Setting up libxcb-util1:s390x (0.4.1-1) ... 168s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 168s Setting up libxcb-xkb1:s390x (1.17.0-2) ... 168s Setting up libxcb-image0:s390x (0.4.0-2build1) ... 168s Setting up libxcb-present0:s390x (1.17.0-2) ... 168s Setting up libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 168s Setting up libblas3:s390x (3.12.1-2) ... 168s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 168s Setting up libxcb-xinerama0:s390x (1.17.0-2) ... 168s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 168s Setting up libxcb-sync1:s390x (1.17.0-2) ... 168s Setting up libavahi-common-data:s390x (0.8-14ubuntu1) ... 168s Setting up pymol-data (3.0.0+dfsg-3) ... 168s Setting up libxkbcommon-x11-0:s390x (1.7.0-2) ... 168s Setting up fonts-dejavu-mono (2.37-8) ... 168s Setting up fonts-dejavu-core (2.37-8) ... 168s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 168s Setting up libglapi-mesa:s390x (24.3.4-3ubuntu1) ... 168s Setting up libgfortran5:s390x (14.2.0-17ubuntu1) ... 168s Setting up libvulkan1:s390x (1.4.304.0-1) ... 168s Setting up python3-legacy-cgi (2.6.1-2) ... 168s Setting up python3-pyqt5.sip (12.17.0-1) ... 168s Setting up libmtdev1t64:s390x (1.1.7-1) ... 168s Setting up libxshmfence1:s390x (1.3-1build5) ... 168s Setting up libxcb-randr0:s390x (1.17.0-2) ... 168s Setting up libqt5sql5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 168s Setting up libmd4c0:s390x (0.5.2-2) ... 168s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 168s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ... 168s Setting up libsz2:s390x (1.1.3-1) ... 168s Setting up libwacom-common (2.14.0-1) ... 168s Setting up libwayland-client0:s390x (1.23.1-1) ... 168s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 168s Setting up libice6:s390x (2:1.1.1-1) ... 168s Setting up mesa-libgallium:s390x (24.3.4-3ubuntu1) ... 168s Setting up liblapack3:s390x (3.12.1-2) ... 168s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 168s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 168s Setting up libgbm1:s390x (24.3.4-3ubuntu1) ... 168s Setting up libwacom9:s390x (2.14.0-1) ... 168s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 168s Setting up libgl1-mesa-dri:s390x (24.3.4-3ubuntu1) ... 168s Setting up libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 168s Setting up libavahi-common3:s390x (0.8-14ubuntu1) ... 168s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 168s Setting up libqt5test5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 168s Setting up libinput-bin (1.27.1-1) ... 168s Setting up libegl-mesa0:s390x (24.3.4-3ubuntu1) ... 168s Setting up python3-numpy (1:1.26.4+ds-13) ... 169s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 169s Setting up libegl1:s390x (1.7.0-1build1) ... 169s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 169s Setting up libsm6:s390x (2:1.2.4-1) ... 169s Setting up libavahi-client3:s390x (0.8-14ubuntu1) ... 169s Setting up libinput10:s390x (1.27.1-1) ... 169s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 169s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 171s Regenerating fonts cache... done. 171s Setting up libnetcdf19t64:s390x (1:4.9.2-6ubuntu2) ... 171s Setting up libglx-mesa0:s390x (24.3.4-3ubuntu1) ... 171s Setting up libglx0:s390x (1.7.0-1build1) ... 171s Setting up libgl1:s390x (1.7.0-1build1) ... 171s Setting up libglew2.2:s390x (2.2.0-4build1) ... 171s Setting up libcups2t64:s390x (2.4.11-0ubuntu2) ... 171s Setting up python3-opengl (3.1.7+dfsg-1) ... 172s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 172s '''OpenGL extension AMD.vertex_shader_tessellator 172s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 172s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 172s Setting up libqt5help5:s390x (5.15.15-6) ... 172s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 172s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-1ubuntu2) ... 172s Setting up libqt5designer5:s390x (5.15.15-6) ... 172s Setting up python3-pyqt5 (5.15.11+dfsg-1build2) ... 172s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build2) ... 172s Setting up python3-pymol (3.0.0+dfsg-3) ... 173s Setting up pymol (3.0.0+dfsg-3) ... 173s Processing triggers for libc-bin (2.41-1ubuntu1) ... 173s Processing triggers for man-db (2.13.0-1) ... 173s Processing triggers for udev (257.2-3ubuntu1) ... 175s autopkgtest [01:55:00]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 175s autopkgtest [01:55:00]: test command1: [----------------------- 176s Search pymol scripts in /tmp/autopkgtest.SUCShU/build.A52/src/examples... 176s Processing new directory /tmp/autopkgtest.SUCShU/build.A52/src/examples 176s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/chempy/generate_amber.py'... 176s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/chempy/generate_mmff.py'... 176s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/area_diff.pml'... 177s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/build_peptide.py'... 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/contact.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/dali.py 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/density.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/groel_es.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/multiclip_ray.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/packing.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/packsurf.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/ref_frame.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/ribosome.pml 177s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/scenes2movie.pml 177s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/seq_match_sele.pml'... 181s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/ss_xfer.pml 181s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/symsph.py'... 181s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/brick01.py'... 181s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo01.py'... 181s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo02.py'... 184s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo03.py'... 187s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo04.py'... 188s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo05.py'... 188s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo06.py'... 190s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo07.py'... 190s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo08.py'... 190s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_3Dtext01.py'... 190s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_axes.py'... 191s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_label_hack.py'... 194s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_plane.py'... 194s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/chempy_model01.py'... 194s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/chempy_model02.py'... 194s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/chempy_model03.py'... 197s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/click_ordered_list.py'... 197s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/count_molecules.py'... 197s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/extend_demo01.py'... 198s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/gl01.py'... 198s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/gl02.py'... 198s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/gl03.py'... 201s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/importing.py 201s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/link_demo.py'... 201s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/membrane.py'... 202s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/mutate01.pml'... 202s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/mutate02.py'... 203s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/my_ext_gui.py'... 203s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/particle01.py'... 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/particle02.py'... 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/pick_wiz.py'... 204s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/povray01.py 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/scenes_to_movie01.pml'... 204s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/sd_annotate.pml 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/sele_wiz.py'... 204s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/start_pymol.py 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/syncmol.py'... 204s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/tkwindow.py 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/webgui01.py'... 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/webgui02.py'... 204s /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 204s mo = re.search("molid\=([A-Z0-9]+)",self.path) 204s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/xmlrpc01.py 204s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/xmlrpc02.py'... 205s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/launching/launch_demo.py'... 205s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/launching/launch_viewer1.py'... 205s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/launching/launch_viewer2.py'... 205s Processing new directory /tmp/autopkgtest.SUCShU/build.A52/src/examples/chempy 205s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/chempy/generate_amber.py'... 205s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/chempy/generate_mmff.py'... 205s Processing new directory /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook 205s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/area_diff.pml'... 206s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/build_peptide.py'... 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/contact.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/dali.py 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/density.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/groel_es.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/multiclip_ray.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/packing.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/packsurf.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/ref_frame.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/ribosome.pml 206s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/scenes2movie.pml 206s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/seq_match_sele.pml'... 207s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/ss_xfer.pml 207s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/cookbook/symsph.py'... 207s Processing new directory /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel 207s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/brick01.py'... 207s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo01.py'... 208s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo02.py'... 211s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo03.py'... 214s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo04.py'... 214s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo05.py'... 214s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo06.py'... 215s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo07.py'... 215s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo08.py'... 215s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_3Dtext01.py'... 215s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_axes.py'... 215s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_label_hack.py'... 218s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/cgo_plane.py'... 219s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/chempy_model01.py'... 219s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/chempy_model02.py'... 219s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/chempy_model03.py'... 222s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/click_ordered_list.py'... 222s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/count_molecules.py'... 222s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/extend_demo01.py'... 222s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/gl01.py'... 223s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/gl02.py'... 223s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/gl03.py'... 226s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/importing.py 226s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/link_demo.py'... 226s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/membrane.py'... 226s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/mutate01.pml'... 227s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/mutate02.py'... 228s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/my_ext_gui.py'... 228s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/particle01.py'... 228s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/particle02.py'... 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/pick_wiz.py'... 229s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/povray01.py 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/scenes_to_movie01.pml'... 229s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/sd_annotate.pml 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/sele_wiz.py'... 229s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/start_pymol.py 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/syncmol.py'... 229s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/tkwindow.py 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/webgui01.py'... 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/webgui02.py'... 229s Skip /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/xmlrpc01.py 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/xmlrpc02.py'... 229s /tmp/autopkgtest.SUCShU/build.A52/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 229s mo = re.search("molid\=([A-Z0-9]+)",self.path) 229s Processing new directory /tmp/autopkgtest.SUCShU/build.A52/src/examples/launching 229s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/launching/launch_demo.py'... 230s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/launching/launch_viewer1.py'... 230s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/examples/launching/launch_viewer2.py'... 230s autopkgtest [01:55:55]: test command1: -----------------------] 230s command1 PASS (superficial) 230s autopkgtest [01:55:55]: test command1: - - - - - - - - - - results - - - - - - - - - - 231s autopkgtest [01:55:56]: test command2: preparing testbed 231s Reading package lists... 231s Building dependency tree... 231s Reading state information... 231s Starting pkgProblemResolver with broken count: 0 231s Starting 2 pkgProblemResolver with broken count: 0 231s Done 232s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 232s autopkgtest [01:55:57]: test command2: sh debian/tests/call-pymol-scripts data/demo 232s autopkgtest [01:55:57]: test command2: [----------------------- 232s Search pymol scripts in /tmp/autopkgtest.SUCShU/build.A52/src/data/demo... 232s Processing new directory /tmp/autopkgtest.SUCShU/build.A52/src/data/demo 232s Run 'pymol -c /tmp/autopkgtest.SUCShU/build.A52/src/data/demo/cgo03.py'... 236s autopkgtest [01:56:01]: test command2: -----------------------] 236s autopkgtest [01:56:01]: test command2: - - - - - - - - - - results - - - - - - - - - - 236s command2 PASS (superficial) 237s autopkgtest [01:56:02]: test command3: preparing testbed 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 237s Starting pkgProblemResolver with broken count: 0 237s Starting 2 pkgProblemResolver with broken count: 0 237s Done 238s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s autopkgtest [01:56:03]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 238s autopkgtest [01:56:03]: test command3: [----------------------- 238s Search pymol scripts in /usr/share/pymol/examples... 238s Processing new directory /usr/share/pymol/examples 238s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 239s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 239s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 239s Skip /usr/share/pymol/examples/cookbook/contact.pml 239s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 239s Skip /usr/share/pymol/examples/cookbook/packing.pml 239s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 239s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 239s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 239s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 239s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 239s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 242s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 257s Skip /usr/share/pymol/examples/devel/importing.py 257s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 258s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 258s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 258s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 259s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 259s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 260s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 260s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 260s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 260s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 260s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 260s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 260s Skip /usr/share/pymol/examples/devel/tkwindow.py 260s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 260s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 261s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 261s mo = re.search("molid\=([A-Z0-9]+)",self.path) 261s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 261s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 261s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 261s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 261s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 261s Processing new directory /usr/share/pymol/examples/chempy 261s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 261s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 261s Processing new directory /usr/share/pymol/examples/cookbook 261s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 261s Skip /usr/share/pymol/examples/cookbook/contact.pml 261s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 261s Skip /usr/share/pymol/examples/cookbook/packing.pml 261s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 261s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 261s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 261s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 261s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 261s Processing new directory /usr/share/pymol/examples/devel 261s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 261s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 262s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 265s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 268s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 269s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 272s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 273s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 276s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 276s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 276s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 276s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 277s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 277s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 280s Skip /usr/share/pymol/examples/devel/importing.py 280s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 280s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 280s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 281s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 282s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 283s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 283s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 283s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 283s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 283s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 283s Skip /usr/share/pymol/examples/devel/tkwindow.py 283s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 283s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 283s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 283s mo = re.search("molid\=([A-Z0-9]+)",self.path) 283s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 283s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 283s Processing new directory /usr/share/pymol/examples/launching 283s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 284s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 284s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 284s autopkgtest [01:56:49]: test command3: -----------------------] 284s autopkgtest [01:56:49]: test command3: - - - - - - - - - - results - - - - - - - - - - 284s command3 PASS (superficial) 285s autopkgtest [01:56:50]: test command4: preparing testbed 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 285s Starting pkgProblemResolver with broken count: 0 285s Starting 2 pkgProblemResolver with broken count: 0 285s Done 285s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 286s autopkgtest [01:56:51]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 286s autopkgtest [01:56:51]: test command4: [----------------------- 286s Search pymol scripts in /usr/share/pymol/examples/cookbook... 286s Processing new directory /usr/share/pymol/examples/cookbook 286s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 287s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 289s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 289s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 291s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 321s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 329s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 329s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 330s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 332s autopkgtest [01:57:37]: test command4: -----------------------] 333s command4 PASS (superficial) 333s autopkgtest [01:57:38]: test command4: - - - - - - - - - - results - - - - - - - - - - 333s autopkgtest [01:57:38]: test command5: preparing testbed 333s Reading package lists... 334s Building dependency tree... 334s Reading state information... 334s Starting pkgProblemResolver with broken count: 0 334s Starting 2 pkgProblemResolver with broken count: 0 334s Done 334s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 335s autopkgtest [01:57:40]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 335s autopkgtest [01:57:40]: test command5: [----------------------- 335s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 335s Copyright (c) Schrodinger, LLC. 335s All Rights Reserved. 335s 335s Created by Warren L. DeLano, Ph.D. 335s 335s PyMOL is user-supported open-source software. Although some versions 335s are freely available, PyMOL is not in the public domain. 335s 335s If PyMOL is helpful in your work or study, then please volunteer 335s support for our ongoing efforts to create open and affordable scientific 335s software by purchasing a PyMOL Maintenance and/or Support subscription. 335s 335s More information can be found at "http://www.pymol.org". 335s 335s Enter "help" for a list of commands. 335s Enter "help " for information on a specific command. 335s 335s Hit ESC anytime to toggle between text and graphics. 335s 335s Setting: wizard_prompt_mode set to 3. 335s Detected 2 CPU cores. Enabled multithreaded rendering. 335s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 335s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 335s PyMOL>wizard annotation 335s PyMOL>set wizard_prompt_mode,3 335s PyMOL>load_annotated_sdf demo.sdf 335s HBA ['[1, 25, 26, 34]\n'] 335s HBD ['[20]\n'] 335s ACD_NUMBER ['MFCD02681585\n'] 335s SCORE ['-222.044\n'] 335s MOLID ['MFCD02681585\n'] 335s HBA ['[1, 21]\n'] 335s HBD ['[]\n'] 335s ACD_NUMBER ['MFCD01567969\n'] 335s SCORE ['-219.984\n'] 335s MOLID ['MFCD01567969\n'] 335s HBA ['[1, 24]\n'] 335s HBD ['[10, 22]\n'] 335s ACD_NUMBER ['MFCD00023789\n'] 335s SCORE ['-219.911\n'] 335s MOLID ['MFCD00023789\n'] 335s HBA ['[1, 11]\n'] 335s HBD ['[3]\n'] 335s ACD_NUMBER ['MFCD02579443\n'] 335s SCORE ['-219.769\n'] 335s MOLID ['MFCD02579443\n'] 335s HBA ['[1, 11]\n'] 335s HBD ['[9]\n'] 335s ACD_NUMBER ['MFCD02579410\n'] 335s SCORE ['-214.809\n'] 335s MOLID ['MFCD02579410\n'] 335s HBA ['[1, 20, 22, 27, 32]\n'] 335s HBD ['[10, 20]\n'] 335s ACD_NUMBER ['MFCD02579135\n'] 335s SCORE ['-213.630\n'] 335s MOLID ['MFCD02579135\n'] 335s HBA ['[1, 11, 14, 21]\n'] 335s HBD ['[]\n'] 335s ACD_NUMBER ['MFCD02681468\n'] 335s SCORE ['-213.462\n'] 335s MOLID ['MFCD02681468\n'] 335s HBA ['[1, 13, 14, 29]\n'] 335s HBD ['[]\n'] 335s ACD_NUMBER ['MFCD00141070\n'] 335s SCORE ['-213.240\n'] 335s MOLID ['MFCD00141070\n'] 335s HBA ['[1, 8]\n'] 335s HBD ['[]\n'] 335s ACD_NUMBER ['MFCD02983625\n'] 335s SCORE ['-211.422\n'] 335s MOLID ['MFCD02983625\n'] 335s HBA ['[1, 11]\n'] 335s HBD ['[3, 12]\n'] 335s ACD_NUMBER ['MFCD00115818\n'] 335s SCORE ['-210.482\n'] 335s MOLID ['MFCD00115818\n'] 335s autopkgtest [01:57:40]: test command5: -----------------------] 336s command5 PASS (superficial) 336s autopkgtest [01:57:41]: test command5: - - - - - - - - - - results - - - - - - - - - - 336s autopkgtest [01:57:41]: @@@@@@@@@@@@@@@@@@@@ summary 336s command1 PASS (superficial) 336s command2 PASS (superficial) 336s command3 PASS (superficial) 336s command4 PASS (superficial) 336s command5 PASS (superficial) 353s nova [W] Using flock in prodstack6-s390x 353s Creating nova instance adt-plucky-s390x-pymol-20250216-015205-juju-7f2275-prod-proposed-migration-environment-2-38ba2f9b-d33a-4a33-98b7-7a41063d5887 from image adt/ubuntu-plucky-s390x-server-20250215.img (UUID 099dc609-2061-4009-a65b-d554466baca0)... 353s nova [W] Timed out waiting for aa810c59-8474-40db-9d65-403726b58375 to get deleted.