0s autopkgtest [19:41:04]: starting date and time: 2025-01-03 19:41:04+0000 0s autopkgtest [19:41:04]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:41:04]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ml9d3s1a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-16.secgroup --name adt-plucky-s390x-pymol-20250103-194104-juju-7f2275-prod-proposed-migration-environment-20-05275aa4-1df9-4cab-b365-33ca76090763 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [19:42:56]: testbed dpkg architecture: s390x 113s autopkgtest [19:42:57]: testbed apt version: 2.9.18 113s autopkgtest [19:42:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s autopkgtest [19:42:57]: testbed release detected to be: None 114s autopkgtest [19:42:58]: updating testbed package index (apt update) 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [777 kB] 115s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.5 kB] 115s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 115s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [83.8 kB] 115s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [756 B] 115s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [741 kB] 115s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [4080 B] 115s Fetched 1776 kB in 1s (2011 kB/s) 115s Reading package lists... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Calculating upgrade... 116s The following packages will be upgraded: 116s binutils binutils-common binutils-s390x-linux-gnu libbinutils libctf-nobfd0 116s libctf0 libsframe1 116s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Need to get 3250 kB of archives. 116s After this operation, 0 B of additional disk space will be used. 116s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libctf0 s390x 2.43.50.20241230-1ubuntu1 [101 kB] 116s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libctf-nobfd0 s390x 2.43.50.20241230-1ubuntu1 [101 kB] 116s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x binutils-s390x-linux-gnu s390x 2.43.50.20241230-1ubuntu1 [2328 kB] 117s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libbinutils s390x 2.43.50.20241230-1ubuntu1 [481 kB] 117s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x binutils s390x 2.43.50.20241230-1ubuntu1 [3068 B] 117s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x binutils-common s390x 2.43.50.20241230-1ubuntu1 [222 kB] 117s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libsframe1 s390x 2.43.50.20241230-1ubuntu1 [13.9 kB] 117s Fetched 3250 kB in 1s (4678 kB/s) 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55616 files and directories currently installed.) 117s Preparing to unpack .../0-libctf0_2.43.50.20241230-1ubuntu1_s390x.deb ... 117s Unpacking libctf0:s390x (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 117s Preparing to unpack .../1-libctf-nobfd0_2.43.50.20241230-1ubuntu1_s390x.deb ... 117s Unpacking libctf-nobfd0:s390x (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 117s Preparing to unpack .../2-binutils-s390x-linux-gnu_2.43.50.20241230-1ubuntu1_s390x.deb ... 117s Unpacking binutils-s390x-linux-gnu (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 117s Preparing to unpack .../3-libbinutils_2.43.50.20241230-1ubuntu1_s390x.deb ... 117s Unpacking libbinutils:s390x (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 117s Preparing to unpack .../4-binutils_2.43.50.20241230-1ubuntu1_s390x.deb ... 117s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 117s Preparing to unpack .../5-binutils-common_2.43.50.20241230-1ubuntu1_s390x.deb ... 117s Unpacking binutils-common:s390x (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 117s Preparing to unpack .../6-libsframe1_2.43.50.20241230-1ubuntu1_s390x.deb ... 117s Unpacking libsframe1:s390x (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ... 117s Setting up binutils-common:s390x (2.43.50.20241230-1ubuntu1) ... 117s Setting up libctf-nobfd0:s390x (2.43.50.20241230-1ubuntu1) ... 117s Setting up libsframe1:s390x (2.43.50.20241230-1ubuntu1) ... 117s Setting up libbinutils:s390x (2.43.50.20241230-1ubuntu1) ... 117s Setting up libctf0:s390x (2.43.50.20241230-1ubuntu1) ... 117s Setting up binutils-s390x-linux-gnu (2.43.50.20241230-1ubuntu1) ... 117s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 117s Processing triggers for libc-bin (2.40-4ubuntu1) ... 117s Processing triggers for man-db (2.13.0-1) ... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 118s autopkgtest [19:43:02]: upgrading testbed (apt dist-upgrade and autopurge) 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s Entering ResolveByKeep 119s 119s The following packages were automatically installed and are no longer required: 119s python3.12 python3.12-minimal 119s Use 'sudo apt autoremove' to remove them. 119s The following NEW packages will be installed: 119s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 119s The following packages will be upgraded: 119s libpython3-stdlib python3 python3-minimal 119s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 6108 kB of archives. 119s After this operation, 22.7 MB of additional disk space will be used. 119s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.1-2 [880 kB] 120s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.1-2 [2364 kB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.13.1-1~exp2 [27.6 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.13.1-1~exp2 [23.9 kB] 120s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.1-2 [2074 kB] 120s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.1-2 [729 kB] 120s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.13.1-1~exp2 [10.2 kB] 120s Fetched 6108 kB in 1s (7540 kB/s) 120s Selecting previously unselected package libpython3.13-minimal:s390x. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55616 files and directories currently installed.) 120s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_s390x.deb ... 120s Unpacking libpython3.13-minimal:s390x (3.13.1-2) ... 120s Selecting previously unselected package python3.13-minimal. 120s Preparing to unpack .../python3.13-minimal_3.13.1-2_s390x.deb ... 120s Unpacking python3.13-minimal (3.13.1-2) ... 120s Setting up libpython3.13-minimal:s390x (3.13.1-2) ... 120s Setting up python3.13-minimal (3.13.1-2) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55936 files and directories currently installed.) 121s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_s390x.deb ... 121s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 121s Setting up python3-minimal (3.13.1-1~exp2) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55936 files and directories currently installed.) 121s Preparing to unpack .../python3_3.13.1-1~exp2_s390x.deb ... 121s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 121s Selecting previously unselected package libpython3.13-stdlib:s390x. 121s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_s390x.deb ... 121s Unpacking libpython3.13-stdlib:s390x (3.13.1-2) ... 121s Selecting previously unselected package python3.13. 121s Preparing to unpack .../python3.13_3.13.1-2_s390x.deb ... 121s Unpacking python3.13 (3.13.1-2) ... 121s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_s390x.deb ... 121s Unpacking libpython3-stdlib:s390x (3.13.1-1~exp2) over (3.12.8-1) ... 121s Setting up libpython3.13-stdlib:s390x (3.13.1-2) ... 121s Setting up libpython3-stdlib:s390x (3.13.1-1~exp2) ... 121s Setting up python3.13 (3.13.1-2) ... 122s Setting up python3 (3.13.1-1~exp2) ... 122s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 122s for fn in glob1(directory, "%s.*" % fname): 122s Processing triggers for man-db (2.13.0-1) ... 122s Processing triggers for systemd (257-2ubuntu1) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Starting pkgProblemResolver with broken count: 0 123s Starting 2 pkgProblemResolver with broken count: 0 123s Done 123s The following packages will be REMOVED: 123s python3.12* python3.12-minimal* 123s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 123s After this operation, 9190 kB disk space will be freed. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56353 files and directories currently installed.) 123s Removing python3.12 (3.12.8-3) ... 123s Removing python3.12-minimal (3.12.8-3) ... 123s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 123s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 123s Processing triggers for man-db (2.13.0-1) ... 124s Processing triggers for systemd (257-2ubuntu1) ... 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56325 files and directories currently installed.) 124s Purging configuration files for python3.12-minimal (3.12.8-3) ... 126s autopkgtest [19:43:10]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 126s autopkgtest [19:43:10]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 130s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (dsc) [2304 B] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (tar) [22.0 MB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (diff) [57.7 kB] 130s gpgv: Signature made Thu Nov 14 18:31:58 2024 UTC 130s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 130s gpgv: Can't check signature: No public key 130s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1build1.dsc: no acceptable signature found 131s autopkgtest [19:43:15]: testing package pymol version 3.0.0+dfsg-1build1 132s autopkgtest [19:43:16]: build not needed 134s autopkgtest [19:43:18]: test command1: preparing testbed 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s Starting pkgProblemResolver with broken count: 0 135s Starting 2 pkgProblemResolver with broken count: 0 135s Done 135s The following NEW packages will be installed: 135s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 135s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 135s libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 135s libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 135s libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 135s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6 135s libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 135s libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64 135s libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 135s libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 135s libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common 135s libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 135s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 135s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 135s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 135s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 135s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 135s python3-numpy python3-opengl python3-pymol python3-pyqt5 135s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 135s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 135s Need to get 51.2 MB of archives. 135s After this operation, 201 MB of additional disk space will be used. 135s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 136s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 136s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 136s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 136s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 136s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB] 136s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 136s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-14ubuntu1 [30.5 kB] 136s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-14ubuntu1 [23.6 kB] 136s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-14ubuntu1 [26.8 kB] 136s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-4 [238 kB] 136s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.11-0ubuntu2 [282 kB] 136s Get:13 http://ftpmaster.internal/ubuntu plucky/universe s390x libdouble-conversion3 s390x 3.3.0-1build1 [43.9 kB] 136s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdrm-radeon1 s390x 2.4.123-1 [22.4 kB] 136s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-server0 s390x 1.23.0-1 [36.5 kB] 136s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 136s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libglapi-mesa s390x 24.2.8-1ubuntu1 [68.0 kB] 136s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 136s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri2-0 s390x 1.17.0-2 [7448 B] 136s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 136s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 136s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 136s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 136s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 136s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x mesa-libgallium s390x 24.2.8-1ubuntu1 [7719 kB] 136s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libgbm1 s390x 24.2.8-1ubuntu1 [33.7 kB] 136s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.0-1 [27.6 kB] 136s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 136s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libegl-mesa0 s390x 24.2.8-1ubuntu1 [133 kB] 136s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-12ubuntu1 [587 kB] 136s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libvulkan1 s390x 1.3.296.0-1 [143 kB] 136s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1-mesa-dri s390x 24.2.8-1ubuntu1 [34.4 kB] 136s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 136s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 136s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 136s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 136s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libglx-mesa0 s390x 24.2.8-1ubuntu1 [175 kB] 136s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 136s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 136s Get:40 http://ftpmaster.internal/ubuntu plucky/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 136s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-12ubuntu1 [151 kB] 136s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 136s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.1.0-1 [537 kB] 136s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 136s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-5ubuntu1 [1435 kB] 136s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-5ubuntu1 [58.1 kB] 136s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 136s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 136s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom-common all 2.13.0-1 [98.6 kB] 136s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom9 s390x 2.13.0-1 [25.4 kB] 136s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libinput-bin s390x 1.26.2-1 [22.8 kB] 136s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libmtdev1t64 s390x 1.1.6-1.2 [15.6 kB] 136s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libinput10 s390x 1.26.2-1 [135 kB] 136s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 136s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 136s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-4 [2964 kB] 137s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB] 137s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf19t64 s390x 1:4.9.2-6ubuntu1 [496 kB] 137s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.42-4ubuntu3 [236 kB] 137s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-1ubuntu1 [2239 kB] 137s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-1ubuntu1 [240 kB] 137s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB] 137s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-1ubuntu1 [788 kB] 137s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 137s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB] 137s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-util1 s390x 0.4.0-1build3 [10.6 kB] 137s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB] 137s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-keysyms1 s390x 0.4.0-1build4 [8216 B] 137s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 137s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render-util0 s390x 0.3.9-1build4 [9550 B] 137s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B] 137s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B] 137s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB] 137s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB] 137s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libxkbcommon-x11-0 s390x 1.7.0-2 [14.8 kB] 137s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 137s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-1ubuntu1 [4188 kB] 137s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-1ubuntu1 [2718 kB] 137s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-1ubuntu1 [129 kB] 137s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5designer5 s390x 5.15.15-4 [2899 kB] 137s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-1ubuntu1 [130 kB] 137s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5help5 s390x 5.15.15-4 [172 kB] 137s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-1ubuntu1 [156 kB] 137s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-1ubuntu1 [218 kB] 137s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-1ubuntu1 [156 kB] 137s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-12 [4601 kB] 137s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 137s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 137s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-opengl all 3.1.7+dfsg-1 [612 kB] 137s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.sip s390x 12.16.1-1 [69.5 kB] 137s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-1build1 [2878 kB] 137s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-1build1 [140 kB] 137s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol-data all 3.0.0+dfsg-1build1 [1394 kB] 137s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pymol s390x 3.0.0+dfsg-1build1 [7961 kB] 138s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol all 3.0.0+dfsg-1build1 [126 kB] 138s Fetched 51.2 MB in 2s (20.8 MB/s) 138s Selecting previously unselected package libfreetype6:s390x. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56325 files and directories currently installed.) 138s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 138s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 138s Selecting previously unselected package fonts-dejavu-mono. 138s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-mono (2.37-8) ... 138s Selecting previously unselected package fonts-dejavu-core. 138s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-core (2.37-8) ... 138s Selecting previously unselected package fontconfig-config. 138s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 138s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 138s Selecting previously unselected package libfontconfig1:s390x. 138s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 138s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 138s Selecting previously unselected package fontconfig. 138s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ... 138s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 138s Selecting previously unselected package libaec0:s390x. 138s Preparing to unpack .../06-libaec0_1.1.3-1_s390x.deb ... 138s Unpacking libaec0:s390x (1.1.3-1) ... 138s Selecting previously unselected package libavahi-common-data:s390x. 138s Preparing to unpack .../07-libavahi-common-data_0.8-14ubuntu1_s390x.deb ... 138s Unpacking libavahi-common-data:s390x (0.8-14ubuntu1) ... 138s Selecting previously unselected package libavahi-common3:s390x. 138s Preparing to unpack .../08-libavahi-common3_0.8-14ubuntu1_s390x.deb ... 138s Unpacking libavahi-common3:s390x (0.8-14ubuntu1) ... 138s Selecting previously unselected package libavahi-client3:s390x. 138s Preparing to unpack .../09-libavahi-client3_0.8-14ubuntu1_s390x.deb ... 138s Unpacking libavahi-client3:s390x (0.8-14ubuntu1) ... 138s Selecting previously unselected package libblas3:s390x. 138s Preparing to unpack .../10-libblas3_3.12.0-4_s390x.deb ... 138s Unpacking libblas3:s390x (3.12.0-4) ... 138s Selecting previously unselected package libcups2t64:s390x. 138s Preparing to unpack .../11-libcups2t64_2.4.11-0ubuntu2_s390x.deb ... 138s Unpacking libcups2t64:s390x (2.4.11-0ubuntu2) ... 138s Selecting previously unselected package libdouble-conversion3:s390x. 138s Preparing to unpack .../12-libdouble-conversion3_3.3.0-1build1_s390x.deb ... 138s Unpacking libdouble-conversion3:s390x (3.3.0-1build1) ... 138s Selecting previously unselected package libdrm-radeon1:s390x. 138s Preparing to unpack .../13-libdrm-radeon1_2.4.123-1_s390x.deb ... 138s Unpacking libdrm-radeon1:s390x (2.4.123-1) ... 138s Selecting previously unselected package libwayland-server0:s390x. 138s Preparing to unpack .../14-libwayland-server0_1.23.0-1_s390x.deb ... 138s Unpacking libwayland-server0:s390x (1.23.0-1) ... 138s Selecting previously unselected package libxcb-randr0:s390x. 138s Preparing to unpack .../15-libxcb-randr0_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 138s Selecting previously unselected package libglapi-mesa:s390x. 138s Preparing to unpack .../16-libglapi-mesa_24.2.8-1ubuntu1_s390x.deb ... 138s Unpacking libglapi-mesa:s390x (24.2.8-1ubuntu1) ... 138s Selecting previously unselected package libx11-xcb1:s390x. 138s Preparing to unpack .../17-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 138s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 138s Selecting previously unselected package libxcb-dri2-0:s390x. 138s Preparing to unpack .../18-libxcb-dri2-0_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-dri2-0:s390x (1.17.0-2) ... 138s Selecting previously unselected package libxcb-dri3-0:s390x. 138s Preparing to unpack .../19-libxcb-dri3-0_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 138s Selecting previously unselected package libxcb-present0:s390x. 138s Preparing to unpack .../20-libxcb-present0_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-present0:s390x (1.17.0-2) ... 138s Selecting previously unselected package libxcb-sync1:s390x. 138s Preparing to unpack .../21-libxcb-sync1_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 138s Selecting previously unselected package libxcb-xfixes0:s390x. 138s Preparing to unpack .../22-libxcb-xfixes0_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 138s Selecting previously unselected package libxshmfence1:s390x. 138s Preparing to unpack .../23-libxshmfence1_1.3-1build5_s390x.deb ... 138s Unpacking libxshmfence1:s390x (1.3-1build5) ... 138s Selecting previously unselected package mesa-libgallium:s390x. 138s Preparing to unpack .../24-mesa-libgallium_24.2.8-1ubuntu1_s390x.deb ... 138s Unpacking mesa-libgallium:s390x (24.2.8-1ubuntu1) ... 138s Selecting previously unselected package libgbm1:s390x. 138s Preparing to unpack .../25-libgbm1_24.2.8-1ubuntu1_s390x.deb ... 138s Unpacking libgbm1:s390x (24.2.8-1ubuntu1) ... 138s Selecting previously unselected package libwayland-client0:s390x. 138s Preparing to unpack .../26-libwayland-client0_1.23.0-1_s390x.deb ... 138s Unpacking libwayland-client0:s390x (1.23.0-1) ... 138s Selecting previously unselected package libxcb-shm0:s390x. 138s Preparing to unpack .../27-libxcb-shm0_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 138s Selecting previously unselected package libegl-mesa0:s390x. 138s Preparing to unpack .../28-libegl-mesa0_24.2.8-1ubuntu1_s390x.deb ... 138s Unpacking libegl-mesa0:s390x (24.2.8-1ubuntu1) ... 138s Selecting previously unselected package libgfortran5:s390x. 138s Preparing to unpack .../29-libgfortran5_14.2.0-12ubuntu1_s390x.deb ... 138s Unpacking libgfortran5:s390x (14.2.0-12ubuntu1) ... 138s Selecting previously unselected package libvulkan1:s390x. 138s Preparing to unpack .../30-libvulkan1_1.3.296.0-1_s390x.deb ... 138s Unpacking libvulkan1:s390x (1.3.296.0-1) ... 138s Selecting previously unselected package libgl1-mesa-dri:s390x. 138s Preparing to unpack .../31-libgl1-mesa-dri_24.2.8-1ubuntu1_s390x.deb ... 138s Unpacking libgl1-mesa-dri:s390x (24.2.8-1ubuntu1) ... 138s Selecting previously unselected package libglvnd0:s390x. 138s Preparing to unpack .../32-libglvnd0_1.7.0-1build1_s390x.deb ... 138s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 138s Selecting previously unselected package libxcb-glx0:s390x. 138s Preparing to unpack .../33-libxcb-glx0_1.17.0-2_s390x.deb ... 138s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 139s Selecting previously unselected package libxfixes3:s390x. 139s Preparing to unpack .../34-libxfixes3_1%3a6.0.0-2build1_s390x.deb ... 139s Unpacking libxfixes3:s390x (1:6.0.0-2build1) ... 139s Selecting previously unselected package libxxf86vm1:s390x. 139s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 139s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 139s Selecting previously unselected package libglx-mesa0:s390x. 139s Preparing to unpack .../36-libglx-mesa0_24.2.8-1ubuntu1_s390x.deb ... 139s Unpacking libglx-mesa0:s390x (24.2.8-1ubuntu1) ... 139s Selecting previously unselected package libglx0:s390x. 139s Preparing to unpack .../37-libglx0_1.7.0-1build1_s390x.deb ... 139s Unpacking libglx0:s390x (1.7.0-1build1) ... 139s Selecting previously unselected package libgl1:s390x. 139s Preparing to unpack .../38-libgl1_1.7.0-1build1_s390x.deb ... 139s Unpacking libgl1:s390x (1.7.0-1build1) ... 139s Selecting previously unselected package libglew2.2:s390x. 139s Preparing to unpack .../39-libglew2.2_2.2.0-4build1_s390x.deb ... 139s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 139s Selecting previously unselected package libgomp1:s390x. 139s Preparing to unpack .../40-libgomp1_14.2.0-12ubuntu1_s390x.deb ... 139s Unpacking libgomp1:s390x (14.2.0-12ubuntu1) ... 139s Selecting previously unselected package libgraphite2-3:s390x. 139s Preparing to unpack .../41-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 139s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 139s Selecting previously unselected package libharfbuzz0b:s390x. 139s Preparing to unpack .../42-libharfbuzz0b_10.1.0-1_s390x.deb ... 139s Unpacking libharfbuzz0b:s390x (10.1.0-1) ... 139s Selecting previously unselected package libsz2:s390x. 139s Preparing to unpack .../43-libsz2_1.1.3-1_s390x.deb ... 139s Unpacking libsz2:s390x (1.1.3-1) ... 139s Selecting previously unselected package libhdf5-103-1t64:s390x. 139s Preparing to unpack .../44-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_s390x.deb ... 139s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-5ubuntu1) ... 139s Selecting previously unselected package libhdf5-hl-100t64:s390x. 139s Preparing to unpack .../45-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_s390x.deb ... 139s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-5ubuntu1) ... 139s Selecting previously unselected package x11-common. 139s Preparing to unpack .../46-x11-common_1%3a7.7+23ubuntu3_all.deb ... 139s Unpacking x11-common (1:7.7+23ubuntu3) ... 139s Selecting previously unselected package libice6:s390x. 139s Preparing to unpack .../47-libice6_2%3a1.1.1-1_s390x.deb ... 139s Unpacking libice6:s390x (2:1.1.1-1) ... 139s Selecting previously unselected package libwacom-common. 139s Preparing to unpack .../48-libwacom-common_2.13.0-1_all.deb ... 139s Unpacking libwacom-common (2.13.0-1) ... 139s Selecting previously unselected package libwacom9:s390x. 139s Preparing to unpack .../49-libwacom9_2.13.0-1_s390x.deb ... 139s Unpacking libwacom9:s390x (2.13.0-1) ... 139s Selecting previously unselected package libinput-bin. 139s Preparing to unpack .../50-libinput-bin_1.26.2-1_s390x.deb ... 139s Unpacking libinput-bin (1.26.2-1) ... 139s Selecting previously unselected package libmtdev1t64:s390x. 139s Preparing to unpack .../51-libmtdev1t64_1.1.6-1.2_s390x.deb ... 139s Unpacking libmtdev1t64:s390x (1.1.6-1.2) ... 139s Selecting previously unselected package libinput10:s390x. 139s Preparing to unpack .../52-libinput10_1.26.2-1_s390x.deb ... 139s Unpacking libinput10:s390x (1.26.2-1) ... 139s Selecting previously unselected package libjpeg-turbo8:s390x. 139s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 139s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 139s Selecting previously unselected package libjpeg8:s390x. 139s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_s390x.deb ... 139s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 139s Selecting previously unselected package liblapack3:s390x. 139s Preparing to unpack .../55-liblapack3_3.12.0-4_s390x.deb ... 139s Unpacking liblapack3:s390x (3.12.0-4) ... 139s Selecting previously unselected package libmd4c0:s390x. 139s Preparing to unpack .../56-libmd4c0_0.5.2-2_s390x.deb ... 139s Unpacking libmd4c0:s390x (0.5.2-2) ... 139s Selecting previously unselected package libnetcdf19t64:s390x. 139s Preparing to unpack .../57-libnetcdf19t64_1%3a4.9.2-6ubuntu1_s390x.deb ... 139s Unpacking libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ... 139s Selecting previously unselected package libpcre2-16-0:s390x. 139s Preparing to unpack .../58-libpcre2-16-0_10.42-4ubuntu3_s390x.deb ... 139s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu3) ... 139s Selecting previously unselected package libqt5core5t64:s390x. 139s Preparing to unpack .../59-libqt5core5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 139s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 139s Selecting previously unselected package libqt5dbus5t64:s390x. 139s Preparing to unpack .../60-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 139s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 139s Selecting previously unselected package libegl1:s390x. 139s Preparing to unpack .../61-libegl1_1.7.0-1build1_s390x.deb ... 139s Unpacking libegl1:s390x (1.7.0-1build1) ... 139s Selecting previously unselected package libqt5network5t64:s390x. 139s Preparing to unpack .../62-libqt5network5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 139s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 139s Selecting previously unselected package libsm6:s390x. 139s Preparing to unpack .../63-libsm6_2%3a1.2.4-1_s390x.deb ... 139s Unpacking libsm6:s390x (2:1.2.4-1) ... 139s Selecting previously unselected package libxcb-icccm4:s390x. 139s Preparing to unpack .../64-libxcb-icccm4_0.4.2-1_s390x.deb ... 139s Unpacking libxcb-icccm4:s390x (0.4.2-1) ... 139s Selecting previously unselected package libxcb-util1:s390x. 139s Preparing to unpack .../65-libxcb-util1_0.4.0-1build3_s390x.deb ... 139s Unpacking libxcb-util1:s390x (0.4.0-1build3) ... 139s Selecting previously unselected package libxcb-image0:s390x. 139s Preparing to unpack .../66-libxcb-image0_0.4.0-2build1_s390x.deb ... 139s Unpacking libxcb-image0:s390x (0.4.0-2build1) ... 139s Selecting previously unselected package libxcb-keysyms1:s390x. 139s Preparing to unpack .../67-libxcb-keysyms1_0.4.0-1build4_s390x.deb ... 139s Unpacking libxcb-keysyms1:s390x (0.4.0-1build4) ... 139s Selecting previously unselected package libxcb-render0:s390x. 139s Preparing to unpack .../68-libxcb-render0_1.17.0-2_s390x.deb ... 139s Unpacking libxcb-render0:s390x (1.17.0-2) ... 139s Selecting previously unselected package libxcb-render-util0:s390x. 139s Preparing to unpack .../69-libxcb-render-util0_0.3.9-1build4_s390x.deb ... 139s Unpacking libxcb-render-util0:s390x (0.3.9-1build4) ... 139s Selecting previously unselected package libxcb-shape0:s390x. 139s Preparing to unpack .../70-libxcb-shape0_1.17.0-2_s390x.deb ... 139s Unpacking libxcb-shape0:s390x (1.17.0-2) ... 139s Selecting previously unselected package libxcb-xinerama0:s390x. 139s Preparing to unpack .../71-libxcb-xinerama0_1.17.0-2_s390x.deb ... 139s Unpacking libxcb-xinerama0:s390x (1.17.0-2) ... 139s Selecting previously unselected package libxcb-xinput0:s390x. 139s Preparing to unpack .../72-libxcb-xinput0_1.17.0-2_s390x.deb ... 139s Unpacking libxcb-xinput0:s390x (1.17.0-2) ... 139s Selecting previously unselected package libxcb-xkb1:s390x. 139s Preparing to unpack .../73-libxcb-xkb1_1.17.0-2_s390x.deb ... 139s Unpacking libxcb-xkb1:s390x (1.17.0-2) ... 139s Selecting previously unselected package libxkbcommon-x11-0:s390x. 139s Preparing to unpack .../74-libxkbcommon-x11-0_1.7.0-2_s390x.deb ... 139s Unpacking libxkbcommon-x11-0:s390x (1.7.0-2) ... 139s Selecting previously unselected package libxrender1:s390x. 139s Preparing to unpack .../75-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 139s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 139s Selecting previously unselected package libqt5gui5t64:s390x. 139s Preparing to unpack .../76-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 139s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 139s Selecting previously unselected package libqt5widgets5t64:s390x. 139s Preparing to unpack .../77-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 139s Unpacking libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 139s Selecting previously unselected package libqt5xml5t64:s390x. 139s Preparing to unpack .../78-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 139s Unpacking libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 139s Selecting previously unselected package libqt5designer5:s390x. 139s Preparing to unpack .../79-libqt5designer5_5.15.15-4_s390x.deb ... 139s Unpacking libqt5designer5:s390x (5.15.15-4) ... 139s Selecting previously unselected package libqt5sql5t64:s390x. 139s Preparing to unpack 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unselected package python3-numpy. 139s Preparing to unpack .../85-python3-numpy_1%3a1.26.4+ds-12_s390x.deb ... 139s Unpacking python3-numpy (1:1.26.4+ds-12) ... 139s Selecting previously unselected package libopengl0:s390x. 139s Preparing to unpack .../86-libopengl0_1.7.0-1build1_s390x.deb ... 139s Unpacking libopengl0:s390x (1.7.0-1build1) ... 139s Selecting previously unselected package libglu1-mesa:s390x. 139s Preparing to unpack .../87-libglu1-mesa_9.0.2-1.1build1_s390x.deb ... 139s Unpacking libglu1-mesa:s390x (9.0.2-1.1build1) ... 139s Selecting previously unselected package python3-opengl. 139s Preparing to unpack .../88-python3-opengl_3.1.7+dfsg-1_all.deb ... 139s Unpacking python3-opengl (3.1.7+dfsg-1) ... 140s Selecting previously unselected package python3-pyqt5.sip. 140s Preparing to unpack .../89-python3-pyqt5.sip_12.16.1-1_s390x.deb ... 140s Unpacking python3-pyqt5.sip (12.16.1-1) ... 140s Selecting previously unselected package python3-pyqt5. 140s Preparing to unpack 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up libwayland-server0:s390x (1.23.0-1) ... 140s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 140s Setting up libdouble-conversion3:s390x (3.3.0-1build1) ... 140s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 140s Setting up libxcb-xinput0:s390x (1.17.0-2) ... 140s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 140s Setting up libxcb-render0:s390x (1.17.0-2) ... 140s Setting up libdrm-radeon1:s390x (2.4.123-1) ... 140s Setting up libglvnd0:s390x (1.7.0-1build1) ... 140s Setting up libxcb-glx0:s390x (1.17.0-2) ... 140s Setting up libxcb-keysyms1:s390x (0.4.0-1build4) ... 140s Setting up libxcb-shape0:s390x (1.17.0-2) ... 140s Setting up x11-common (1:7.7+23ubuntu3) ... 140s Setting up libxcb-render-util0:s390x (0.3.9-1build4) ... 140s Setting up libxcb-shm0:s390x (1.17.0-2) ... 140s Setting up libxcb-icccm4:s390x (0.4.2-1) ... 140s Setting up libgomp1:s390x (14.2.0-12ubuntu1) ... 140s Setting up libpcre2-16-0:s390x (10.42-4ubuntu3) ... 140s Setting up libaec0:s390x (1.1.3-1) ... 140s Setting up libopengl0:s390x (1.7.0-1build1) ... 140s Setting up libxcb-util1:s390x (0.4.0-1build3) ... 140s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 140s Setting up libxcb-xkb1:s390x (1.17.0-2) ... 140s Setting up libxcb-image0:s390x (0.4.0-2build1) ... 140s Setting up libxcb-present0:s390x (1.17.0-2) ... 140s Setting up libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 140s Setting up libblas3:s390x (3.12.0-4) ... 140s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 140s Setting up libxcb-xinerama0:s390x (1.17.0-2) ... 140s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 140s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 140s Setting up libxcb-sync1:s390x (1.17.0-2) ... 140s Setting up libavahi-common-data:s390x (0.8-14ubuntu1) ... 140s Setting up pymol-data (3.0.0+dfsg-1build1) ... 140s Setting up libxkbcommon-x11-0:s390x (1.7.0-2) ... 140s Setting up fonts-dejavu-mono (2.37-8) ... 140s Setting up fonts-dejavu-core (2.37-8) ... 140s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 140s Setting up libglapi-mesa:s390x (24.2.8-1ubuntu1) ... 140s Setting up libgfortran5:s390x (14.2.0-12ubuntu1) ... 140s Setting up libvulkan1:s390x (1.3.296.0-1) ... 140s Setting up libxcb-dri2-0:s390x (1.17.0-2) ... 140s Setting up python3-pyqt5.sip (12.16.1-1) ... 140s Setting up libmtdev1t64:s390x (1.1.6-1.2) ... 140s Setting up libxshmfence1:s390x (1.3-1build5) ... 140s Setting up libxcb-randr0:s390x (1.17.0-2) ... 140s Setting up libqt5sql5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 140s Setting up libmd4c0:s390x (0.5.2-2) ... 140s Setting up libharfbuzz0b:s390x (10.1.0-1) ... 140s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ... 140s Setting up libsz2:s390x (1.1.3-1) ... 140s Setting up libwacom-common (2.13.0-1) ... 140s Setting up libwayland-client0:s390x (1.23.0-1) ... 140s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 140s Setting up libice6:s390x (2:1.1.1-1) ... 140s Setting up mesa-libgallium:s390x (24.2.8-1ubuntu1) ... 140s Setting up liblapack3:s390x (3.12.0-4) ... 140s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 140s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 140s Setting up libgbm1:s390x (24.2.8-1ubuntu1) ... 140s Setting up libwacom9:s390x (2.13.0-1) ... 140s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 140s Setting up libgl1-mesa-dri:s390x (24.2.8-1ubuntu1) ... 140s Setting up libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 140s Setting up libavahi-common3:s390x (0.8-14ubuntu1) ... 140s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 140s Setting up libqt5test5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 140s Setting up libinput-bin (1.26.2-1) ... 140s Setting up libegl-mesa0:s390x (24.2.8-1ubuntu1) ... 140s Setting up python3-numpy (1:1.26.4+ds-12) ... 141s Setting up libegl1:s390x (1.7.0-1build1) ... 141s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 141s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-5ubuntu1) ... 141s Setting up libsm6:s390x (2:1.2.4-1) ... 141s Setting up libavahi-client3:s390x (0.8-14ubuntu1) ... 141s Setting up libinput10:s390x (1.26.2-1) ... 141s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-5ubuntu1) ... 141s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 143s Regenerating fonts cache... done. 143s Setting up libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ... 143s Setting up libglx-mesa0:s390x (24.2.8-1ubuntu1) ... 143s Setting up libglx0:s390x (1.7.0-1build1) ... 144s Setting up libgl1:s390x (1.7.0-1build1) ... 144s Setting up libglew2.2:s390x (2.2.0-4build1) ... 144s Setting up libcups2t64:s390x (2.4.11-0ubuntu2) ... 144s Setting up python3-opengl (3.1.7+dfsg-1) ... 144s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 144s '''OpenGL extension AMD.vertex_shader_tessellator 144s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 144s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 144s Setting up libqt5help5:s390x (5.15.15-4) ... 144s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 144s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 144s Setting up libqt5designer5:s390x (5.15.15-4) ... 144s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 145s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 145s Setting up python3-pymol (3.0.0+dfsg-1build1) ... 145s Setting up pymol (3.0.0+dfsg-1build1) ... 145s Processing triggers for libc-bin (2.40-4ubuntu1) ... 145s Processing triggers for man-db (2.13.0-1) ... 145s Processing triggers for udev (257-2ubuntu1) ... 146s autopkgtest [19:43:30]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 146s autopkgtest [19:43:30]: test command1: [----------------------- 146s Search pymol scripts in /tmp/autopkgtest.gdTDhn/build.58a/src/examples... 146s Processing new directory /tmp/autopkgtest.gdTDhn/build.58a/src/examples 146s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/chempy/generate_amber.py'... 146s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/chempy/generate_mmff.py'... 147s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/area_diff.pml'... 147s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/build_peptide.py'... 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/contact.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/dali.py 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/density.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/groel_es.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/multiclip_ray.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/packing.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/packsurf.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/ref_frame.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/ribosome.pml 147s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/scenes2movie.pml 147s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/seq_match_sele.pml'... 150s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/ss_xfer.pml 150s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/symsph.py'... 150s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/brick01.py'... 150s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo01.py'... 150s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo02.py'... 153s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo03.py'... 156s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo04.py'... 156s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo05.py'... 157s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo06.py'... 158s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo07.py'... 158s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo08.py'... 159s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_3Dtext01.py'... 159s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_axes.py'... 159s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_label_hack.py'... 162s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_plane.py'... 162s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/chempy_model01.py'... 162s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/chempy_model02.py'... 162s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/chempy_model03.py'... 165s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/click_ordered_list.py'... 166s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/count_molecules.py'... 166s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/extend_demo01.py'... 166s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/gl01.py'... 166s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/gl02.py'... 166s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/gl03.py'... 169s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/importing.py 169s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/link_demo.py'... 169s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/membrane.py'... 170s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/mutate01.pml'... 170s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/mutate02.py'... 171s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/my_ext_gui.py'... 171s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/particle01.py'... 172s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/particle02.py'... 172s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/pick_wiz.py'... 172s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/povray01.py 172s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/scenes_to_movie01.pml'... 172s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/sd_annotate.pml 172s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/sele_wiz.py'... 172s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/start_pymol.py 172s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/syncmol.py'... 172s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/tkwindow.py 172s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui01.py'... 172s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 172s Copyright (c) Schrodinger, LLC. 172s All Rights Reserved. 172s 172s Created by Warren L. DeLano, Ph.D. 172s 172s PyMOL is user-supported open-source software. Although some versions 172s are freely available, PyMOL is not in the public domain. 172s 172s If PyMOL is helpful in your work or study, then please volunteer 172s support for our ongoing efforts to create open and affordable scientific 172s software by purchasing a PyMOL Maintenance and/or Support subscription. 172s 172s More information can be found at "http://www.pymol.org". 172s 172s Enter "help" for a list of commands. 172s Enter "help " for information on a specific command. 172s 172s Hit ESC anytime to toggle between text and graphics. 172s 172s Detected 2 CPU cores. Enabled multithreaded rendering. 172s Traceback (most recent call last): 172s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 172s run_(path, ns_pymol, ns_pymol) 172s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 172s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 172s execfile(file,global_ns,local_ns) 172s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 172s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 172s exec(co, global_ns, local_ns) 172s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 172s File "/tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui01.py", line 7, in 172s import cgi 172s ModuleNotFoundError: No module named 'cgi' 172s  not ok - error-related patterns were found in pymol output 172s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py'... 173s /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 173s mo = re.search("molid\=([A-Z0-9]+)",self.path) 173s /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 173s mo = re.search("molid\=([A-Z0-9]+)",self.path) 173s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 173s Copyright (c) Schrodinger, LLC. 173s All Rights Reserved. 173s 173s Created by Warren L. DeLano, Ph.D. 173s 173s PyMOL is user-supported open-source software. Although some versions 173s are freely available, PyMOL is not in the public domain. 173s 173s If PyMOL is helpful in your work or study, then please volunteer 173s support for our ongoing efforts to create open and affordable scientific 173s software by purchasing a PyMOL Maintenance and/or Support subscription. 173s 173s More information can be found at "http://www.pymol.org". 173s 173s Enter "help" for a list of commands. 173s Enter "help " for information on a specific command. 173s 173s Hit ESC anytime to toggle between text and graphics. 173s 173s Detected 2 CPU cores. Enabled multithreaded rendering. 173s Traceback (most recent call last): 173s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 173s run_(path, ns_pymol, ns_pymol) 173s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 173s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 173s execfile(file,global_ns,local_ns) 173s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 173s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 173s exec(co, global_ns, local_ns) 173s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 173s File "/tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py", line 10, in 173s import cgi 173s ModuleNotFoundError: No module named 'cgi' 173s  not ok - error-related patterns were found in pymol output 173s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/xmlrpc01.py 173s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/xmlrpc02.py'... 173s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/launching/launch_demo.py'... 173s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/launching/launch_viewer1.py'... 173s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/launching/launch_viewer2.py'... 173s Processing new directory /tmp/autopkgtest.gdTDhn/build.58a/src/examples/chempy 173s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/chempy/generate_amber.py'... 173s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/chempy/generate_mmff.py'... 173s Processing new directory /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook 173s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/area_diff.pml'... 174s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/build_peptide.py'... 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/contact.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/dali.py 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/density.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/groel_es.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/multiclip_ray.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/packing.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/packsurf.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/ref_frame.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/ribosome.pml 174s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/scenes2movie.pml 174s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/seq_match_sele.pml'... 176s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/ss_xfer.pml 176s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/cookbook/symsph.py'... 176s Processing new directory /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel 176s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/brick01.py'... 177s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo01.py'... 177s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo02.py'... 180s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo03.py'... 183s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo04.py'... 183s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo05.py'... 183s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo06.py'... 185s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo07.py'... 185s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo08.py'... 185s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_3Dtext01.py'... 185s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_axes.py'... 185s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_label_hack.py'... 189s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/cgo_plane.py'... 189s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/chempy_model01.py'... 189s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/chempy_model02.py'... 189s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/chempy_model03.py'... 192s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/click_ordered_list.py'... 192s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/count_molecules.py'... 192s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/extend_demo01.py'... 192s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/gl01.py'... 193s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/gl02.py'... 193s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/gl03.py'... 196s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/importing.py 196s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/link_demo.py'... 196s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/membrane.py'... 196s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/mutate01.pml'... 197s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/mutate02.py'... 198s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/my_ext_gui.py'... 198s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/particle01.py'... 198s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/particle02.py'... 199s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/pick_wiz.py'... 199s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/povray01.py 199s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/scenes_to_movie01.pml'... 199s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/sd_annotate.pml 199s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/sele_wiz.py'... 199s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/start_pymol.py 199s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/syncmol.py'... 199s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/tkwindow.py 199s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui01.py'... 199s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 199s Copyright (c) Schrodinger, LLC. 199s All Rights Reserved. 199s 199s Created by Warren L. DeLano, Ph.D. 199s 199s PyMOL is user-supported open-source software. Although some versions 199s are freely available, PyMOL is not in the public domain. 199s 199s If PyMOL is helpful in your work or study, then please volunteer 199s support for our ongoing efforts to create open and affordable scientific 199s software by purchasing a PyMOL Maintenance and/or Support subscription. 199s 199s More information can be found at "http://www.pymol.org". 199s 199s Enter "help" for a list of commands. 199s Enter "help " for information on a specific command. 199s 199s Hit ESC anytime to toggle between text and graphics. 199s 199s Detected 2 CPU cores. Enabled multithreaded rendering. 199s Traceback (most recent call last): 199s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 199s run_(path, ns_pymol, ns_pymol) 199s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 199s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 199s execfile(file,global_ns,local_ns) 199s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 199s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 199s exec(co, global_ns, local_ns) 199s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 199s File "/tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui01.py", line 7, in 199s import cgi 199s ModuleNotFoundError: No module named 'cgi' 199s  not ok - error-related patterns were found in pymol output 199s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py'... 199s /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 199s mo = re.search("molid\=([A-Z0-9]+)",self.path) 199s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 199s Copyright (c) Schrodinger, LLC. 199s All Rights Reserved. 199s 199s Created by Warren L. DeLano, Ph.D. 199s 199s PyMOL is user-supported open-source software. Although some versions 199s are freely available, PyMOL is not in the public domain. 199s 199s If PyMOL is helpful in your work or study, then please volunteer 199s /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 199s mo = re.search("molid\=([A-Z0-9]+)",self.path) 199s support for our ongoing efforts to create open and affordable scientific 199s software by purchasing a PyMOL Maintenance and/or Support subscription. 199s 199s More information can be found at "http://www.pymol.org". 199s 199s Enter "help" for a list of commands. 199s Enter "help " for information on a specific command. 199s 199s Hit ESC anytime to toggle between text and graphics. 199s 199s Detected 2 CPU cores. Enabled multithreaded rendering. 199s Traceback (most recent call last): 199s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 199s run_(path, ns_pymol, ns_pymol) 199s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 199s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 199s execfile(file,global_ns,local_ns) 199s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 199s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 199s exec(co, global_ns, local_ns) 199s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 199s File "/tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/webgui02.py", line 10, in 199s import cgi 199s ModuleNotFoundError: No module named 'cgi' 199s  not ok - error-related patterns were found in pymol output 199s Skip /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/xmlrpc01.py 199s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/devel/xmlrpc02.py'... 200s Processing new directory /tmp/autopkgtest.gdTDhn/build.58a/src/examples/launching 200s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/launching/launch_demo.py'... 200s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/launching/launch_viewer1.py'... 200s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/examples/launching/launch_viewer2.py'... 200s autopkgtest [19:44:24]: test command1: -----------------------] 201s autopkgtest [19:44:25]: test command1: - - - - - - - - - - results - - - - - - - - - - 201s command1 PASS (superficial) 201s autopkgtest [19:44:25]: test command2: preparing testbed 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s Starting pkgProblemResolver with broken count: 0 201s Starting 2 pkgProblemResolver with broken count: 0 201s Done 202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s autopkgtest [19:44:26]: test command2: sh debian/tests/call-pymol-scripts data/demo 202s autopkgtest [19:44:26]: test command2: [----------------------- 202s Search pymol scripts in /tmp/autopkgtest.gdTDhn/build.58a/src/data/demo... 202s Processing new directory /tmp/autopkgtest.gdTDhn/build.58a/src/data/demo 202s Run 'pymol -c /tmp/autopkgtest.gdTDhn/build.58a/src/data/demo/cgo03.py'... 206s autopkgtest [19:44:30]: test command2: -----------------------] 206s command2 PASS (superficial) 206s autopkgtest [19:44:30]: test command2: - - - - - - - - - - results - - - - - - - - - - 207s autopkgtest [19:44:31]: test command3: preparing testbed 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 208s autopkgtest [19:44:32]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 208s autopkgtest [19:44:32]: test command3: [----------------------- 208s Search pymol scripts in /usr/share/pymol/examples... 208s Processing new directory /usr/share/pymol/examples 208s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 208s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 208s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 208s Skip /usr/share/pymol/examples/cookbook/contact.pml 208s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 208s Skip /usr/share/pymol/examples/cookbook/packing.pml 208s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 208s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 208s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 208s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 208s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 208s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 208s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 209s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 212s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 220s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 228s Skip /usr/share/pymol/examples/devel/importing.py 228s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 231s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 231s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 231s Skip /usr/share/pymol/examples/devel/tkwindow.py 231s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 231s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 231s Copyright (c) Schrodinger, LLC. 231s All Rights Reserved. 231s 231s Created by Warren L. DeLano, Ph.D. 231s 231s PyMOL is user-supported open-source software. Although some versions 231s are freely available, PyMOL is not in the public domain. 231s 231s If PyMOL is helpful in your work or study, then please volunteer 231s support for our ongoing efforts to create open and affordable scientific 231s software by purchasing a PyMOL Maintenance and/or Support subscription. 231s 231s More information can be found at "http://www.pymol.org". 231s 231s Enter "help" for a list of commands. 231s Enter "help " for information on a specific command. 231s 231s Hit ESC anytime to toggle between text and graphics. 231s 231s Detected 2 CPU cores. Enabled multithreaded rendering. 231s Traceback (most recent call last): 231s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 231s run_(path, ns_pymol, ns_pymol) 231s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 231s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 231s execfile(file,global_ns,local_ns) 231s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 231s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 231s exec(co, global_ns, local_ns) 231s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 231s File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in 231s import cgi 231s ModuleNotFoundError: No module named 'cgi' 231s  not ok - error-related patterns were found in pymol output 231s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 231s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 231s mo = re.search("molid\=([A-Z0-9]+)",self.path) 231s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 231s Copyright (c) Schrodinger, LLC. 231s All Rights Reserved. 231s 231s Created by Warren L. DeLano, Ph.D. 231s 231s PyMOL is user-supported open-source software. Although some versions 231s are freely available, PyMOL is not in the public domain. 231s 231s If PyMOL is helpful in your work or study, then please volunteer 231s support for our ongoing efforts to create open and affordable scientific 231s software by purchasing a PyMOL Maintenance and/or Support subscription. 231s 231s More information can be found at "http://www.pymol.org". 231s 231s Enter "help" for a list of commands. 231s Enter "help " for information on a specific command. 231s 231s Hit ESC anytime to toggle between text and graphics. 231s 231s Detected 2 CPU cores. Enabled multithreaded rendering. 231s Traceback (most recent call last): 231s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 231s run_(path, ns_pymol, ns_pymol) 231s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 231s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 231s execfile(file,global_ns,local_ns) 231s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 231s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 231s exec(co, global_ns, local_ns) 231s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 231s File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in 231s import cgi 231s ModuleNotFoundError: No module named 'cgi' 231s  not ok - error-related patterns were found in pymol output 231s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 231s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 231s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 231s mo = re.search("molid\=([A-Z0-9]+)",self.path) 231s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 231s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 232s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 232s Processing new directory /usr/share/pymol/examples/chempy 232s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 232s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 232s Processing new directory /usr/share/pymol/examples/cookbook 232s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 232s Skip /usr/share/pymol/examples/cookbook/contact.pml 232s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 232s Skip /usr/share/pymol/examples/cookbook/packing.pml 232s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 232s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 232s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 232s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 232s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 232s Processing new directory /usr/share/pymol/examples/devel 232s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 240s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 240s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 241s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 241s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 241s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 244s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 244s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 244s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 244s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 247s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 248s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 248s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 248s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 248s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 251s Skip /usr/share/pymol/examples/devel/importing.py 251s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 251s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 252s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 252s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 254s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 254s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 254s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 254s Skip /usr/share/pymol/examples/devel/tkwindow.py 254s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 254s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 254s Copyright (c) Schrodinger, LLC. 254s All Rights Reserved. 254s 254s Created by Warren L. DeLano, Ph.D. 254s 254s PyMOL is user-supported open-source software. Although some versions 254s are freely available, PyMOL is not in the public domain. 254s 254s If PyMOL is helpful in your work or study, then please volunteer 254s support for our ongoing efforts to create open and affordable scientific 254s software by purchasing a PyMOL Maintenance and/or Support subscription. 254s 254s More information can be found at "http://www.pymol.org". 254s 254s Enter "help" for a list of commands. 254s Enter "help " for information on a specific command. 254s 254s Hit ESC anytime to toggle between text and graphics. 254s 254s Detected 2 CPU cores. Enabled multithreaded rendering. 254s Traceback (most recent call last): 254s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 254s run_(path, ns_pymol, ns_pymol) 254s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 254s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 254s execfile(file,global_ns,local_ns) 254s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 254s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 254s exec(co, global_ns, local_ns) 254s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 254s File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in 254s import cgi 254s ModuleNotFoundError: No module named 'cgi' 254s  not ok - error-related patterns were found in pymol output 254s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 254s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 254s mo = re.search("molid\=([A-Z0-9]+)",self.path) 255s  PyMOL(TM) Molecular Graphics System, Version 3.0.0. 255s Copyright (c) Schrodinger, LLC. 255s All Rights Reserved. 255s 255s Created by Warren L. DeLano, Ph.D. 255s 255s PyMOL is user-supported open-source software. Although some versions 255s are freely available, PyMOL is not in the public domain. 255s 255s If PyMOL is helpful in your work or study, then please volunteer 255s support for our ongoing efforts to create open and affordable scientific 255s software by purchasing a PyMOL Maintenance and/or Support subscription. 255s 255s More information can be found at "http://www.pymol.org". 255s 255s Enter "help" for a list of commands. 255s Enter "help " for information on a specific command. 255s 255s Hit ESC anytime to toggle between text and graphics. 255s 255s Detected 2 CPU cores. Enabled multithreaded rendering. 255s Traceback (most recent call last): 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run 255s run_(path, ns_pymol, ns_pymol) 255s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file 255s execfile(file,global_ns,local_ns) 255s ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile 255s exec(co, global_ns, local_ns) 255s ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^ 255s File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in 255s import cgi 255s ModuleNotFoundError: No module named 'cgi' 255s  not ok - error-related patterns were found in pymol output 255s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 255s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 255s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 255s mo = re.search("molid\=([A-Z0-9]+)",self.path) 255s Processing new directory /usr/share/pymol/examples/launching 255s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 255s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 255s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 255s autopkgtest [19:45:19]: test command3: -----------------------] 256s command3 PASS (superficial) 256s autopkgtest [19:45:20]: test command3: - - - - - - - - - - results - - - - - - - - - - 256s autopkgtest [19:45:20]: test command4: preparing testbed 256s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s Starting pkgProblemResolver with broken count: 0 257s Starting 2 pkgProblemResolver with broken count: 0 257s Done 257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 257s autopkgtest [19:45:21]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 257s autopkgtest [19:45:21]: test command4: [----------------------- 257s Search pymol scripts in /usr/share/pymol/examples/cookbook... 257s Processing new directory /usr/share/pymol/examples/cookbook 257s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 258s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 260s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 260s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 261s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 290s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 293s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 293s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 295s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 298s autopkgtest [19:46:02]: test command4: -----------------------] 298s command4 PASS (superficial) 298s autopkgtest [19:46:02]: test command4: - - - - - - - - - - results - - - - - - - - - - 299s autopkgtest [19:46:03]: test command5: preparing testbed 299s Reading package lists... 299s Building dependency tree... 299s Reading state information... 299s Starting pkgProblemResolver with broken count: 0 299s Starting 2 pkgProblemResolver with broken count: 0 299s Done 299s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 300s autopkgtest [19:46:04]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 300s autopkgtest [19:46:04]: test command5: [----------------------- 300s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 300s Copyright (c) Schrodinger, LLC. 300s All Rights Reserved. 300s 300s Created by Warren L. DeLano, Ph.D. 300s 300s PyMOL is user-supported open-source software. Although some versions 300s are freely available, PyMOL is not in the public domain. 300s 300s If PyMOL is helpful in your work or study, then please volunteer 300s support for our ongoing efforts to create open and affordable scientific 300s software by purchasing a PyMOL Maintenance and/or Support subscription. 300s 300s More information can be found at "http://www.pymol.org". 300s 300s Enter "help" for a list of commands. 300s Enter "help " for information on a specific command. 300s 300s Hit ESC anytime to toggle between text and graphics. 300s 300s Setting: wizard_prompt_mode set to 3. 300s Detected 2 CPU cores. Enabled multithreaded rendering. 300s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 300s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 300s PyMOL>wizard annotation 300s PyMOL>set wizard_prompt_mode,3 300s PyMOL>load_annotated_sdf demo.sdf 300s HBA ['[1, 25, 26, 34]\n'] 300s HBD ['[20]\n'] 300s ACD_NUMBER ['MFCD02681585\n'] 300s SCORE ['-222.044\n'] 300s MOLID ['MFCD02681585\n'] 300s HBA ['[1, 21]\n'] 300s HBD ['[]\n'] 300s ACD_NUMBER ['MFCD01567969\n'] 300s SCORE ['-219.984\n'] 300s MOLID ['MFCD01567969\n'] 300s HBA ['[1, 24]\n'] 300s HBD ['[10, 22]\n'] 300s ACD_NUMBER ['MFCD00023789\n'] 300s SCORE ['-219.911\n'] 300s MOLID ['MFCD00023789\n'] 300s HBA ['[1, 11]\n'] 300s HBD ['[3]\n'] 300s ACD_NUMBER ['MFCD02579443\n'] 300s SCORE ['-219.769\n'] 300s MOLID ['MFCD02579443\n'] 300s HBA ['[1, 11]\n'] 300s HBD ['[9]\n'] 300s ACD_NUMBER ['MFCD02579410\n'] 300s SCORE ['-214.809\n'] 300s MOLID ['MFCD02579410\n'] 300s HBA ['[1, 20, 22, 27, 32]\n'] 300s HBD ['[10, 20]\n'] 300s ACD_NUMBER ['MFCD02579135\n'] 300s SCORE ['-213.630\n'] 300s MOLID ['MFCD02579135\n'] 300s HBA ['[1, 11, 14, 21]\n'] 300s HBD ['[]\n'] 300s ACD_NUMBER ['MFCD02681468\n'] 300s SCORE ['-213.462\n'] 300s MOLID ['MFCD02681468\n'] 300s HBA ['[1, 13, 14, 29]\n'] 300s HBD ['[]\n'] 300s ACD_NUMBER ['MFCD00141070\n'] 300s SCORE ['-213.240\n'] 300s MOLID ['MFCD00141070\n'] 300s HBA ['[1, 8]\n'] 300s HBD ['[]\n'] 300s ACD_NUMBER ['MFCD02983625\n'] 300s SCORE ['-211.422\n'] 300s MOLID ['MFCD02983625\n'] 300s HBA ['[1, 11]\n'] 300s HBD ['[3, 12]\n'] 300s ACD_NUMBER ['MFCD00115818\n'] 300s SCORE ['-210.482\n'] 300s MOLID ['MFCD00115818\n'] 300s autopkgtest [19:46:04]: test command5: -----------------------] 301s autopkgtest [19:46:05]: test command5: - - - - - - - - - - results - - - - - - - - - - 301s command5 PASS (superficial) 301s autopkgtest [19:46:05]: @@@@@@@@@@@@@@@@@@@@ summary 301s command1 PASS (superficial) 301s command2 PASS (superficial) 301s command3 PASS (superficial) 301s command4 PASS (superficial) 301s command5 PASS (superficial) 318s nova [W] Using flock in prodstack6-s390x 318s Creating nova instance adt-plucky-s390x-pymol-20250103-194104-juju-7f2275-prod-proposed-migration-environment-20-05275aa4-1df9-4cab-b365-33ca76090763 from image adt/ubuntu-plucky-s390x-server-20250103.img (UUID 9816a864-89cd-473a-b7ab-55eae81bf00a)... 318s nova [W] Timed out waiting for ce0922ff-60ba-44b1-9de7-f0b0482918d5 to get deleted.