0s autopkgtest [16:35:25]: starting date and time: 2024-11-14 16:35:25+0000
  0s autopkgtest [16:35:25]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [16:35:25]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4olass40/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-28.secgroup --name adt-plucky-s390x-pymol-20241114-163525-juju-7f2275-prod-proposed-migration-environment-20-4720bc62-05c3-4d0f-a763-b15166529b94 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
101s autopkgtest [16:37:06]: testbed dpkg architecture: s390x
101s autopkgtest [16:37:06]: testbed apt version: 2.9.8
101s autopkgtest [16:37:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
102s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
102s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
102s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB]
102s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [951 kB]
102s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB]
102s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [117 kB]
102s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [674 kB]
102s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [5020 B]
102s Fetched 1947 kB in 1s (2369 kB/s)
102s Reading package lists...
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
105s Calculating upgrade...
105s The following packages will be upgraded:
105s   libcap-ng0 pastebinit python3-systemd
105s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
105s Need to get 77.8 kB of archives.
105s After this operation, 123 kB of additional disk space will be used.
105s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libcap-ng0 s390x 0.8.5-3build1 [15.9 kB]
105s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pastebinit all 1.7.1-1 [14.9 kB]
105s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-systemd s390x 235-1build5 [46.9 kB]
105s Fetched 77.8 kB in 0s (223 kB/s)
105s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55511 files and directories currently installed.)
105s Preparing to unpack .../libcap-ng0_0.8.5-3build1_s390x.deb ...
105s Unpacking libcap-ng0:s390x (0.8.5-3build1) over (0.8.5-1) ...
105s Setting up libcap-ng0:s390x (0.8.5-3build1) ...
105s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55511 files and directories currently installed.)
105s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ...
105s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ...
105s Preparing to unpack .../python3-systemd_235-1build5_s390x.deb ...
105s Unpacking python3-systemd (235-1build5) over (235-1build4) ...
105s Setting up pastebinit (1.7.1-1) ...
105s Setting up python3-systemd (235-1build5) ...
106s Processing triggers for man-db (2.12.1-3) ...
106s Processing triggers for libc-bin (2.40-1ubuntu3) ...
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
107s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
107s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
107s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
107s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
108s Reading package lists...
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s Calculating upgrade...
108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s autopkgtest [16:37:16]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
111s autopkgtest [16:37:16]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol
115s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B]
115s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB]
115s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB]
115s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC
115s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
115s gpgv:                issuer "emollier@debian.org"
115s gpgv: Can't check signature: No public key
115s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found
116s autopkgtest [16:37:21]: testing package pymol version 3.0.0+dfsg-1
117s autopkgtest [16:37:22]: build not needed
119s autopkgtest [16:37:24]: test command1: preparing testbed
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
122s Starting pkgProblemResolver with broken count: 0
122s Starting 2 pkgProblemResolver with broken count: 0
122s Done
122s The following additional packages will be installed:
122s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0
122s   libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64
122s   libdouble-conversion3 libdrm-amdgpu1 libdrm-radeon1 libegl-mesa0 libegl1
122s   libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri
122s   libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0
122s   libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64
122s   libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0
122s   libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64
122s   libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64
122s   libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64
122s   libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common
122s   libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0
122s   libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
122s   libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
122s   libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
122s   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0
122s   libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data
122s   python3-numpy python3-opengl python3-pymol python3-pyqt5
122s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
122s Suggested packages:
122s   cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins
122s   libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest
122s   libgle3 python3-tk
122s Recommended packages:
122s   libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme
122s   qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc
122s   | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers
122s   | vulkan-icd apbs libglut-dev
122s The following NEW packages will be installed:
122s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
122s   fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data
122s   libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1
122s   libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libfreetype6 libgbm1
122s   libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa
122s   libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b
122s   libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin libinput10
122s   libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64
122s   libopengl0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 libqt5designer5
122s   libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64
122s   libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64
122s   libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9
122s   libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0
122s   libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
122s   libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
122s   libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
122s   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0
122s   libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data
122s   python3-numpy python3-opengl python3-pymol python3-pyqt5
122s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
122s 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded.
122s Need to get 47.4 MB/47.4 MB of archives.
122s After this operation, 190 MB of additional disk space will be used.
122s Get:1 /tmp/autopkgtest.7QaTMK/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B]
122s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
123s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
123s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
123s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB]
123s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB]
123s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB]
123s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB]
123s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-13ubuntu6 [29.7 kB]
123s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-13ubuntu6 [24.1 kB]
123s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-13ubuntu6 [27.2 kB]
123s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
123s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.10-1ubuntu2 [281 kB]
123s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x libdouble-conversion3 s390x 3.3.0-1build1 [43.9 kB]
123s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libdrm-amdgpu1 s390x 2.4.123-1 [21.2 kB]
123s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libdrm-radeon1 s390x 2.4.123-1 [22.4 kB]
123s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-server0 s390x 1.23.0-1 [36.5 kB]
123s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB]
123s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libglapi-mesa s390x 24.2.3-1ubuntu1 [67.8 kB]
123s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B]
123s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri2-0 s390x 1.17.0-2 [7448 B]
123s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B]
123s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B]
123s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B]
123s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB]
123s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B]
123s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x mesa-libgallium s390x 24.2.3-1ubuntu1 [7709 kB]
123s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libgbm1 s390x 24.2.3-1ubuntu1 [33.7 kB]
123s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.0-1 [27.6 kB]
123s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
123s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libegl-mesa0 s390x 24.2.3-1ubuntu1 [133 kB]
123s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
124s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libvulkan1 s390x 1.3.296.0-1 [143 kB]
124s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1-mesa-dri s390x 24.2.3-1ubuntu1 [34.4 kB]
124s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB]
124s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB]
124s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB]
124s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B]
124s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libglx-mesa0 s390x 24.2.3-1ubuntu1 [175 kB]
124s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB]
124s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1 s390x 1.7.0-1build1 [142 kB]
124s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB]
124s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB]
124s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
124s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB]
124s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B]
124s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-4ubuntu3 [1426 kB]
124s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-4ubuntu3 [58.0 kB]
124s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
124s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
124s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom-common all 2.13.0-1 [98.6 kB]
124s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom9 s390x 2.13.0-1 [25.4 kB]
124s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libinput-bin s390x 1.26.2-1 [22.8 kB]
124s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libmtdev1t64 s390x 1.1.6-1.2 [15.6 kB]
124s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libinput10 s390x 1.26.2-1 [135 kB]
124s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB]
124s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
124s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
124s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB]
124s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf19t64 s390x 1:4.9.2-6ubuntu1 [496 kB]
124s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.42-4ubuntu3 [236 kB]
124s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-1ubuntu1 [2239 kB]
124s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-1ubuntu1 [240 kB]
124s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB]
124s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-1ubuntu1 [788 kB]
124s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
124s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB]
124s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-util1 s390x 0.4.0-1build3 [10.6 kB]
124s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB]
124s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-keysyms1 s390x 0.4.0-1build4 [8216 B]
124s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
124s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render-util0 s390x 0.3.9-1build4 [9550 B]
124s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B]
124s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B]
124s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB]
124s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB]
124s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libxkbcommon-x11-0 s390x 1.6.0-1build1 [14.9 kB]
124s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
124s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-1ubuntu1 [4188 kB]
125s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-1ubuntu1 [2718 kB]
125s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-1ubuntu1 [129 kB]
125s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5designer5 s390x 5.15.15-2 [2899 kB]
125s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-1ubuntu1 [130 kB]
125s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5help5 s390x 5.15.15-2 [172 kB]
125s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-1ubuntu1 [156 kB]
125s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-1ubuntu1 [218 kB]
125s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-1ubuntu1 [156 kB]
125s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-numpy s390x 1:1.26.4+ds-11ubuntu1 [4602 kB]
126s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB]
126s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB]
126s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-opengl all 3.1.7+dfsg-1 [612 kB]
126s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.sip s390x 12.15.0-1build1 [69.4 kB]
126s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-1build1 [2878 kB]
126s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-1build1 [140 kB]
126s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol-data all 3.0.0+dfsg-1 [1394 kB]
127s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pymol s390x 3.0.0+dfsg-1 [4207 kB]
127s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol all 3.0.0+dfsg-1 [126 kB]
128s Fetched 47.4 MB in 5s (9268 kB/s)
128s Selecting previously unselected package libfreetype6:s390x.
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128s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
128s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
128s Selecting previously unselected package fonts-dejavu-mono.
128s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
128s Unpacking fonts-dejavu-mono (2.37-8) ...
128s Selecting previously unselected package fonts-dejavu-core.
128s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
128s Unpacking fonts-dejavu-core (2.37-8) ...
128s Selecting previously unselected package fontconfig-config.
128s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ...
128s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
128s Selecting previously unselected package libfontconfig1:s390x.
128s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ...
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128s Selecting previously unselected package fontconfig.
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128s Selecting previously unselected package libaec0:s390x.
128s Preparing to unpack .../06-libaec0_1.1.3-1_s390x.deb ...
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128s Selecting previously unselected package libavahi-common-data:s390x.
128s Preparing to unpack .../07-libavahi-common-data_0.8-13ubuntu6_s390x.deb ...
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128s Selecting previously unselected package libavahi-common3:s390x.
128s Preparing to unpack .../08-libavahi-common3_0.8-13ubuntu6_s390x.deb ...
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128s Selecting previously unselected package libavahi-client3:s390x.
128s Preparing to unpack .../09-libavahi-client3_0.8-13ubuntu6_s390x.deb ...
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128s Selecting previously unselected package libblas3:s390x.
128s Preparing to unpack .../10-libblas3_3.12.0-3build2_s390x.deb ...
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128s Selecting previously unselected package libcups2t64:s390x.
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128s Selecting previously unselected package libdouble-conversion3:s390x.
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128s Selecting previously unselected package libdrm-amdgpu1:s390x.
128s Preparing to unpack .../13-libdrm-amdgpu1_2.4.123-1_s390x.deb ...
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128s Selecting previously unselected package libdrm-radeon1:s390x.
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128s Selecting previously unselected package libwayland-server0:s390x.
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128s Selecting previously unselected package libxcb-randr0:s390x.
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128s Selecting previously unselected package libglapi-mesa:s390x.
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128s Selecting previously unselected package libxcb-dri2-0:s390x.
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128s Selecting previously unselected package libxcb-dri3-0:s390x.
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128s Selecting previously unselected package libxcb-present0:s390x.
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128s Unpacking libxcb-present0:s390x (1.17.0-2) ...
128s Selecting previously unselected package libxcb-sync1:s390x.
128s Preparing to unpack .../22-libxcb-sync1_1.17.0-2_s390x.deb ...
128s Unpacking libxcb-sync1:s390x (1.17.0-2) ...
128s Selecting previously unselected package libxcb-xfixes0:s390x.
128s Preparing to unpack .../23-libxcb-xfixes0_1.17.0-2_s390x.deb ...
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128s Selecting previously unselected package libxshmfence1:s390x.
128s Preparing to unpack .../24-libxshmfence1_1.3-1build5_s390x.deb ...
128s Unpacking libxshmfence1:s390x (1.3-1build5) ...
128s Selecting previously unselected package mesa-libgallium:s390x.
128s Preparing to unpack .../25-mesa-libgallium_24.2.3-1ubuntu1_s390x.deb ...
128s Unpacking mesa-libgallium:s390x (24.2.3-1ubuntu1) ...
128s Selecting previously unselected package libgbm1:s390x.
128s Preparing to unpack .../26-libgbm1_24.2.3-1ubuntu1_s390x.deb ...
128s Unpacking libgbm1:s390x (24.2.3-1ubuntu1) ...
128s Selecting previously unselected package libwayland-client0:s390x.
128s Preparing to unpack .../27-libwayland-client0_1.23.0-1_s390x.deb ...
128s Unpacking libwayland-client0:s390x (1.23.0-1) ...
128s Selecting previously unselected package libxcb-shm0:s390x.
128s Preparing to unpack .../28-libxcb-shm0_1.17.0-2_s390x.deb ...
128s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
128s Selecting previously unselected package libegl-mesa0:s390x.
128s Preparing to unpack .../29-libegl-mesa0_24.2.3-1ubuntu1_s390x.deb ...
128s Unpacking libegl-mesa0:s390x (24.2.3-1ubuntu1) ...
128s Selecting previously unselected package libgfortran5:s390x.
128s Preparing to unpack .../30-libgfortran5_14.2.0-8ubuntu1_s390x.deb ...
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128s Selecting previously unselected package libvulkan1:s390x.
128s Preparing to unpack .../31-libvulkan1_1.3.296.0-1_s390x.deb ...
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128s Selecting previously unselected package libgl1-mesa-dri:s390x.
128s Preparing to unpack .../32-libgl1-mesa-dri_24.2.3-1ubuntu1_s390x.deb ...
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128s Selecting previously unselected package libglvnd0:s390x.
128s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_s390x.deb ...
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128s Selecting previously unselected package libxcb-glx0:s390x.
128s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_s390x.deb ...
128s Unpacking libxcb-glx0:s390x (1.17.0-2) ...
128s Selecting previously unselected package libxfixes3:s390x.
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128s Selecting previously unselected package libxxf86vm1:s390x.
128s Preparing to unpack .../36-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ...
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128s Selecting previously unselected package libglx-mesa0:s390x.
128s Preparing to unpack .../37-libglx-mesa0_24.2.3-1ubuntu1_s390x.deb ...
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128s Selecting previously unselected package libglx0:s390x.
128s Preparing to unpack .../38-libglx0_1.7.0-1build1_s390x.deb ...
128s Unpacking libglx0:s390x (1.7.0-1build1) ...
128s Selecting previously unselected package libgl1:s390x.
128s Preparing to unpack .../39-libgl1_1.7.0-1build1_s390x.deb ...
128s Unpacking libgl1:s390x (1.7.0-1build1) ...
129s Selecting previously unselected package libglew2.2:s390x.
129s Preparing to unpack .../40-libglew2.2_2.2.0-4build1_s390x.deb ...
129s Unpacking libglew2.2:s390x (2.2.0-4build1) ...
129s Selecting previously unselected package libgomp1:s390x.
129s Preparing to unpack .../41-libgomp1_14.2.0-8ubuntu1_s390x.deb ...
129s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ...
129s Selecting previously unselected package libgraphite2-3:s390x.
129s Preparing to unpack .../42-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
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129s Selecting previously unselected package libharfbuzz0b:s390x.
129s Preparing to unpack .../43-libharfbuzz0b_10.0.1-1_s390x.deb ...
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129s Selecting previously unselected package libsz2:s390x.
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129s Selecting previously unselected package libhdf5-103-1t64:s390x.
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129s Selecting previously unselected package libhdf5-hl-100t64:s390x.
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129s Selecting previously unselected package x11-common.
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129s Unpacking x11-common (1:7.7+23ubuntu3) ...
129s Selecting previously unselected package libice6:s390x.
129s Preparing to unpack .../48-libice6_2%3a1.1.1-1_s390x.deb ...
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129s Selecting previously unselected package libwacom-common.
129s Preparing to unpack .../49-libwacom-common_2.13.0-1_all.deb ...
129s Unpacking libwacom-common (2.13.0-1) ...
129s Selecting previously unselected package libwacom9:s390x.
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129s Selecting previously unselected package libinput-bin.
129s Preparing to unpack .../51-libinput-bin_1.26.2-1_s390x.deb ...
129s Unpacking libinput-bin (1.26.2-1) ...
129s Selecting previously unselected package libmtdev1t64:s390x.
129s Preparing to unpack .../52-libmtdev1t64_1.1.6-1.2_s390x.deb ...
129s Unpacking libmtdev1t64:s390x (1.1.6-1.2) ...
129s Selecting previously unselected package libinput10:s390x.
129s Preparing to unpack .../53-libinput10_1.26.2-1_s390x.deb ...
129s Unpacking libinput10:s390x (1.26.2-1) ...
129s Selecting previously unselected package libjpeg-turbo8:s390x.
129s Preparing to unpack .../54-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ...
129s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
129s Selecting previously unselected package libjpeg8:s390x.
129s Preparing to unpack .../55-libjpeg8_8c-2ubuntu11_s390x.deb ...
129s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
129s Selecting previously unselected package liblapack3:s390x.
129s Preparing to unpack .../56-liblapack3_3.12.0-3build2_s390x.deb ...
129s Unpacking liblapack3:s390x (3.12.0-3build2) ...
129s Selecting previously unselected package libmd4c0:s390x.
129s Preparing to unpack .../57-libmd4c0_0.5.2-2_s390x.deb ...
129s Unpacking libmd4c0:s390x (0.5.2-2) ...
129s Selecting previously unselected package libnetcdf19t64:s390x.
129s Preparing to unpack .../58-libnetcdf19t64_1%3a4.9.2-6ubuntu1_s390x.deb ...
129s Unpacking libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ...
129s Selecting previously unselected package libpcre2-16-0:s390x.
129s Preparing to unpack .../59-libpcre2-16-0_10.42-4ubuntu3_s390x.deb ...
129s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu3) ...
129s Selecting previously unselected package libqt5core5t64:s390x.
129s Preparing to unpack .../60-libqt5core5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ...
129s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libqt5dbus5t64:s390x.
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129s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libegl1:s390x.
129s Preparing to unpack .../62-libegl1_1.7.0-1build1_s390x.deb ...
129s Unpacking libegl1:s390x (1.7.0-1build1) ...
129s Selecting previously unselected package libqt5network5t64:s390x.
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129s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libsm6:s390x.
129s Preparing to unpack .../64-libsm6_2%3a1.2.4-1_s390x.deb ...
129s Unpacking libsm6:s390x (2:1.2.4-1) ...
129s Selecting previously unselected package libxcb-icccm4:s390x.
129s Preparing to unpack .../65-libxcb-icccm4_0.4.2-1_s390x.deb ...
129s Unpacking libxcb-icccm4:s390x (0.4.2-1) ...
129s Selecting previously unselected package libxcb-util1:s390x.
129s Preparing to unpack .../66-libxcb-util1_0.4.0-1build3_s390x.deb ...
129s Unpacking libxcb-util1:s390x (0.4.0-1build3) ...
129s Selecting previously unselected package libxcb-image0:s390x.
129s Preparing to unpack .../67-libxcb-image0_0.4.0-2build1_s390x.deb ...
129s Unpacking libxcb-image0:s390x (0.4.0-2build1) ...
129s Selecting previously unselected package libxcb-keysyms1:s390x.
129s Preparing to unpack .../68-libxcb-keysyms1_0.4.0-1build4_s390x.deb ...
129s Unpacking libxcb-keysyms1:s390x (0.4.0-1build4) ...
129s Selecting previously unselected package libxcb-render0:s390x.
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129s Unpacking libxcb-render0:s390x (1.17.0-2) ...
129s Selecting previously unselected package libxcb-render-util0:s390x.
129s Preparing to unpack .../70-libxcb-render-util0_0.3.9-1build4_s390x.deb ...
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129s Selecting previously unselected package libxcb-shape0:s390x.
129s Preparing to unpack .../71-libxcb-shape0_1.17.0-2_s390x.deb ...
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129s Selecting previously unselected package libxcb-xinerama0:s390x.
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129s Selecting previously unselected package libxcb-xinput0:s390x.
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129s Unpacking libxcb-xinput0:s390x (1.17.0-2) ...
129s Selecting previously unselected package libxcb-xkb1:s390x.
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129s Unpacking libxcb-xkb1:s390x (1.17.0-2) ...
129s Selecting previously unselected package libxkbcommon-x11-0:s390x.
129s Preparing to unpack .../75-libxkbcommon-x11-0_1.6.0-1build1_s390x.deb ...
129s Unpacking libxkbcommon-x11-0:s390x (1.6.0-1build1) ...
129s Selecting previously unselected package libxrender1:s390x.
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129s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
129s Selecting previously unselected package libqt5gui5t64:s390x.
129s Preparing to unpack .../77-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ...
129s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libqt5widgets5t64:s390x.
129s Preparing to unpack .../78-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ...
129s Unpacking libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libqt5xml5t64:s390x.
129s Preparing to unpack .../79-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ...
129s Unpacking libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libqt5designer5:s390x.
129s Preparing to unpack .../80-libqt5designer5_5.15.15-2_s390x.deb ...
129s Unpacking libqt5designer5:s390x (5.15.15-2) ...
129s Selecting previously unselected package libqt5sql5t64:s390x.
129s Preparing to unpack .../81-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ...
129s Unpacking libqt5sql5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libqt5help5:s390x.
129s Preparing to unpack .../82-libqt5help5_5.15.15-2_s390x.deb ...
129s Unpacking libqt5help5:s390x (5.15.15-2) ...
129s Selecting previously unselected package libqt5opengl5t64:s390x.
129s Preparing to unpack .../83-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ...
129s Unpacking libqt5opengl5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libqt5printsupport5t64:s390x.
129s Preparing to unpack .../84-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ...
129s Unpacking libqt5printsupport5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package libqt5test5t64:s390x.
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129s Unpacking libqt5test5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
129s Selecting previously unselected package python3-numpy.
129s Preparing to unpack .../86-python3-numpy_1%3a1.26.4+ds-11ubuntu1_s390x.deb ...
129s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ...
129s Selecting previously unselected package libopengl0:s390x.
129s Preparing to unpack .../87-libopengl0_1.7.0-1build1_s390x.deb ...
129s Unpacking libopengl0:s390x (1.7.0-1build1) ...
129s Selecting previously unselected package libglu1-mesa:s390x.
129s Preparing to unpack .../88-libglu1-mesa_9.0.2-1.1build1_s390x.deb ...
129s Unpacking libglu1-mesa:s390x (9.0.2-1.1build1) ...
129s Selecting previously unselected package python3-opengl.
129s Preparing to unpack .../89-python3-opengl_3.1.7+dfsg-1_all.deb ...
129s Unpacking python3-opengl (3.1.7+dfsg-1) ...
130s Selecting previously unselected package python3-pyqt5.sip.
130s Preparing to unpack .../90-python3-pyqt5.sip_12.15.0-1build1_s390x.deb ...
130s Unpacking python3-pyqt5.sip (12.15.0-1build1) ...
130s Selecting previously unselected package python3-pyqt5.
130s Preparing to unpack .../91-python3-pyqt5_5.15.11+dfsg-1build1_s390x.deb ...
130s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ...
130s Selecting previously unselected package python3-pyqt5.qtopengl.
130s Preparing to unpack .../92-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_s390x.deb ...
130s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ...
130s Selecting previously unselected package pymol-data.
130s Preparing to unpack .../93-pymol-data_3.0.0+dfsg-1_all.deb ...
130s Unpacking pymol-data (3.0.0+dfsg-1) ...
130s Selecting previously unselected package python3-pymol.
130s Preparing to unpack .../94-python3-pymol_3.0.0+dfsg-1_s390x.deb ...
130s Unpacking python3-pymol (3.0.0+dfsg-1) ...
130s Selecting previously unselected package pymol.
130s Preparing to unpack .../95-pymol_3.0.0+dfsg-1_all.deb ...
130s Unpacking pymol (3.0.0+dfsg-1) ...
130s Selecting previously unselected package autopkgtest-satdep.
130s Preparing to unpack .../96-1-autopkgtest-satdep.deb ...
130s Unpacking autopkgtest-satdep (0) ...
130s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
130s Setting up libxcb-dri3-0:s390x (1.17.0-2) ...
130s Setting up libwayland-server0:s390x (1.23.0-1) ...
130s Setting up libx11-xcb1:s390x (2:1.8.10-2) ...
130s Setting up libdouble-conversion3:s390x (3.3.0-1build1) ...
130s Setting up libxcb-xfixes0:s390x (1.17.0-2) ...
130s Setting up libxcb-xinput0:s390x (1.17.0-2) ...
130s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
130s Setting up libxcb-render0:s390x (1.17.0-2) ...
130s Setting up libdrm-radeon1:s390x (2.4.123-1) ...
130s Setting up libglvnd0:s390x (1.7.0-1build1) ...
130s Setting up libxcb-glx0:s390x (1.17.0-2) ...
130s Setting up libxcb-keysyms1:s390x (0.4.0-1build4) ...
130s Setting up libxcb-shape0:s390x (1.17.0-2) ...
130s Setting up x11-common (1:7.7+23ubuntu3) ...
130s Setting up libxcb-render-util0:s390x (0.3.9-1build4) ...
130s Setting up libxcb-shm0:s390x (1.17.0-2) ...
130s Setting up libxcb-icccm4:s390x (0.4.2-1) ...
130s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ...
130s Setting up libpcre2-16-0:s390x (10.42-4ubuntu3) ...
130s Setting up libaec0:s390x (1.1.3-1) ...
130s Setting up libopengl0:s390x (1.7.0-1build1) ...
130s Setting up libxcb-util1:s390x (0.4.0-1build3) ...
130s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ...
130s Setting up libxcb-xkb1:s390x (1.17.0-2) ...
130s Setting up libxcb-image0:s390x (0.4.0-2build1) ...
130s Setting up libxcb-present0:s390x (1.17.0-2) ...
130s Setting up libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
130s Setting up libblas3:s390x (3.12.0-3build2) ...
130s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
130s Setting up libxcb-xinerama0:s390x (1.17.0-2) ...
130s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
130s Setting up libxfixes3:s390x (1:6.0.0-2build1) ...
130s Setting up libxcb-sync1:s390x (1.17.0-2) ...
130s Setting up libavahi-common-data:s390x (0.8-13ubuntu6) ...
130s Setting up pymol-data (3.0.0+dfsg-1) ...
130s Setting up libxkbcommon-x11-0:s390x (1.6.0-1build1) ...
130s Setting up fonts-dejavu-mono (2.37-8) ...
130s Setting up fonts-dejavu-core (2.37-8) ...
130s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
130s Setting up libglapi-mesa:s390x (24.2.3-1ubuntu1) ...
130s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
130s Setting up libvulkan1:s390x (1.3.296.0-1) ...
130s Setting up libxcb-dri2-0:s390x (1.17.0-2) ...
130s Setting up python3-pyqt5.sip (12.15.0-1build1) ...
130s Setting up libmtdev1t64:s390x (1.1.6-1.2) ...
130s Setting up libxshmfence1:s390x (1.3-1build5) ...
130s Setting up libxcb-randr0:s390x (1.17.0-2) ...
130s Setting up libqt5sql5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
130s Setting up libmd4c0:s390x (0.5.2-2) ...
130s Setting up libharfbuzz0b:s390x (10.0.1-1) ...
130s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ...
130s Setting up libsz2:s390x (1.1.3-1) ...
130s Setting up libdrm-amdgpu1:s390x (2.4.123-1) ...
130s Setting up libwacom-common (2.13.0-1) ...
130s Setting up libwayland-client0:s390x (1.23.0-1) ...
130s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
130s Setting up libice6:s390x (2:1.1.1-1) ...
130s Setting up mesa-libgallium:s390x (24.2.3-1ubuntu1) ...
130s Setting up liblapack3:s390x (3.12.0-3build2) ...
130s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
130s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
130s Setting up libgbm1:s390x (24.2.3-1ubuntu1) ...
130s Setting up libwacom9:s390x (2.13.0-1) ...
130s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
130s Setting up libgl1-mesa-dri:s390x (24.2.3-1ubuntu1) ...
130s Setting up libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
130s Setting up libavahi-common3:s390x (0.8-13ubuntu6) ...
130s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
130s Setting up libqt5test5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
130s Setting up libinput-bin (1.26.2-1) ...
130s Setting up libegl-mesa0:s390x (24.2.3-1ubuntu1) ...
130s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ...
132s Setting up libegl1:s390x (1.7.0-1build1) ...
132s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
132s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ...
132s Setting up libsm6:s390x (2:1.2.4-1) ...
132s Setting up libavahi-client3:s390x (0.8-13ubuntu6) ...
132s Setting up libinput10:s390x (1.26.2-1) ...
132s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ...
132s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
134s Regenerating fonts cache... done.
134s Setting up libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ...
134s Setting up libglx-mesa0:s390x (24.2.3-1ubuntu1) ...
134s Setting up libglx0:s390x (1.7.0-1build1) ...
134s Setting up libgl1:s390x (1.7.0-1build1) ...
134s Setting up libglew2.2:s390x (2.2.0-4build1) ...
134s Setting up libcups2t64:s390x (2.4.10-1ubuntu2) ...
134s Setting up python3-opengl (3.1.7+dfsg-1) ...
134s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
134s   '''OpenGL extension AMD.vertex_shader_tessellator
135s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
135s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
135s Setting up libqt5help5:s390x (5.15.15-2) ...
136s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
136s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-1ubuntu1) ...
136s Setting up libqt5designer5:s390x (5.15.15-2) ...
136s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ...
136s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ...
136s Setting up python3-pymol (3.0.0+dfsg-1) ...
136s Setting up pymol (3.0.0+dfsg-1) ...
136s Setting up autopkgtest-satdep (0) ...
136s Processing triggers for man-db (2.12.1-3) ...
137s Processing triggers for udev (256.5-2ubuntu4) ...
137s Processing triggers for libc-bin (2.40-1ubuntu3) ...
140s (Reading database ... 61711 files and directories currently installed.)
140s Removing autopkgtest-satdep (0) ...
141s autopkgtest [16:37:46]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)"
141s autopkgtest [16:37:46]: test command1: [-----------------------
141s Search pymol scripts in /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples...
141s Processing new directory /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples
141s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/chempy/generate_amber.py'...
141s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/chempy/generate_mmff.py'...
141s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/area_diff.pml'...
142s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/build_peptide.py'...
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/contact.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/dali.py
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/density.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/groel_es.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/multiclip_ray.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/packing.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/packsurf.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/ref_frame.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/ribosome.pml
142s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/scenes2movie.pml
142s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/seq_match_sele.pml'...
144s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/ss_xfer.pml
144s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/symsph.py'...
144s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/brick01.py'...
144s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo01.py'...
144s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo02.py'...
147s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo03.py'...
150s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo04.py'...
151s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo05.py'...
151s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo06.py'...
152s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo07.py'...
152s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo08.py'...
152s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_3Dtext01.py'...
152s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_axes.py'...
152s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_label_hack.py'...
155s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_plane.py'...
156s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/chempy_model01.py'...
156s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/chempy_model02.py'...
156s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/chempy_model03.py'...
159s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/click_ordered_list.py'...
159s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/count_molecules.py'...
159s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/extend_demo01.py'...
159s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/gl01.py'...
160s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/gl02.py'...
160s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/gl03.py'...
163s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/importing.py
163s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/link_demo.py'...
163s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/membrane.py'...
164s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/mutate01.pml'...
164s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/mutate02.py'...
165s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/my_ext_gui.py'...
165s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/particle01.py'...
166s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/particle02.py'...
166s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/pick_wiz.py'...
166s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/povray01.py
166s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/scenes_to_movie01.pml'...
166s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/sd_annotate.pml
166s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/sele_wiz.py'...
166s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/start_pymol.py
166s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/syncmol.py'...
166s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/tkwindow.py
166s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/webgui01.py'...
166s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/webgui02.py'...
166s /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
166s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
167s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/xmlrpc01.py
167s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/xmlrpc02.py'...
167s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/launching/launch_demo.py'...
167s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/launching/launch_viewer1.py'...
167s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/launching/launch_viewer2.py'...
167s Processing new directory /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/chempy
167s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/chempy/generate_amber.py'...
167s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/chempy/generate_mmff.py'...
167s Processing new directory /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook
167s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/area_diff.pml'...
168s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/build_peptide.py'...
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/contact.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/dali.py
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/density.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/groel_es.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/multiclip_ray.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/packing.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/packsurf.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/ref_frame.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/ribosome.pml
168s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/scenes2movie.pml
168s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/seq_match_sele.pml'...
170s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/ss_xfer.pml
170s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/cookbook/symsph.py'...
170s Processing new directory /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel
170s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/brick01.py'...
170s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo01.py'...
170s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo02.py'...
173s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo03.py'...
177s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo04.py'...
177s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo05.py'...
177s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo06.py'...
178s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo07.py'...
178s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo08.py'...
178s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_3Dtext01.py'...
178s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_axes.py'...
178s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_label_hack.py'...
182s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/cgo_plane.py'...
182s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/chempy_model01.py'...
182s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/chempy_model02.py'...
182s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/chempy_model03.py'...
185s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/click_ordered_list.py'...
185s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/count_molecules.py'...
186s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/extend_demo01.py'...
186s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/gl01.py'...
186s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/gl02.py'...
186s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/gl03.py'...
189s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/importing.py
189s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/link_demo.py'...
190s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/membrane.py'...
190s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/mutate01.pml'...
190s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/mutate02.py'...
191s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/my_ext_gui.py'...
192s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/particle01.py'...
192s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/particle02.py'...
192s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/pick_wiz.py'...
192s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/povray01.py
192s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/scenes_to_movie01.pml'...
192s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/sd_annotate.pml
192s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/sele_wiz.py'...
192s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/start_pymol.py
192s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/syncmol.py'...
193s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/tkwindow.py
193s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/webgui01.py'...
193s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/webgui02.py'...
193s /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
193s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
193s Skip /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/xmlrpc01.py
193s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/devel/xmlrpc02.py'...
193s Processing new directory /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/launching
193s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/launching/launch_demo.py'...
193s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/launching/launch_viewer1.py'...
193s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/examples/launching/launch_viewer2.py'...
194s autopkgtest [16:38:39]: test command1: -----------------------]
194s command1             PASS (superficial)
194s autopkgtest [16:38:39]: test command1:  - - - - - - - - - - results - - - - - - - - - -
194s autopkgtest [16:38:39]: test command2: preparing testbed
198s Reading package lists...
198s Building dependency tree...
198s Reading state information...
198s Starting pkgProblemResolver with broken count: 0
198s Starting 2 pkgProblemResolver with broken count: 0
198s Done
198s The following NEW packages will be installed:
198s   autopkgtest-satdep
198s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
198s Need to get 0 B/700 B of archives.
198s After this operation, 0 B of additional disk space will be used.
198s Get:1 /tmp/autopkgtest.7QaTMK/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [700 B]
199s Selecting previously unselected package autopkgtest-satdep.
199s (Reading database ... 
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199s Preparing to unpack .../2-autopkgtest-satdep.deb ...
199s Unpacking autopkgtest-satdep (0) ...
199s Setting up autopkgtest-satdep (0) ...
200s (Reading database ... 61711 files and directories currently installed.)
200s Removing autopkgtest-satdep (0) ...
201s autopkgtest [16:38:46]: test command2: sh debian/tests/call-pymol-scripts data/demo
201s autopkgtest [16:38:46]: test command2: [-----------------------
201s Search pymol scripts in /tmp/autopkgtest.7QaTMK/build.6Kd/src/data/demo...
201s Processing new directory /tmp/autopkgtest.7QaTMK/build.6Kd/src/data/demo
201s Run 'pymol -c /tmp/autopkgtest.7QaTMK/build.6Kd/src/data/demo/cgo03.py'...
205s autopkgtest [16:38:50]: test command2: -----------------------]
205s command2             PASS (superficial)
205s autopkgtest [16:38:50]: test command2:  - - - - - - - - - - results - - - - - - - - - -
206s autopkgtest [16:38:51]: test command3: preparing testbed
210s Reading package lists...
210s Building dependency tree...
210s Reading state information...
210s Starting pkgProblemResolver with broken count: 0
210s Starting 2 pkgProblemResolver with broken count: 0
210s Done
210s The following NEW packages will be installed:
210s   autopkgtest-satdep
210s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
210s Need to get 0 B/704 B of archives.
210s After this operation, 0 B of additional disk space will be used.
210s Get:1 /tmp/autopkgtest.7QaTMK/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B]
210s Selecting previously unselected package autopkgtest-satdep.
210s (Reading database ... 
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210s Preparing to unpack .../3-autopkgtest-satdep.deb ...
210s Unpacking autopkgtest-satdep (0) ...
210s Setting up autopkgtest-satdep (0) ...
212s (Reading database ... 61711 files and directories currently installed.)
212s Removing autopkgtest-satdep (0) ...
212s autopkgtest [16:38:57]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)"
212s autopkgtest [16:38:57]: test command3: [-----------------------
212s Search pymol scripts in /usr/share/pymol/examples...
212s Processing new directory /usr/share/pymol/examples
212s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
213s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
213s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
213s Skip /usr/share/pymol/examples/cookbook/contact.pml
213s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
213s Skip /usr/share/pymol/examples/cookbook/packing.pml
213s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
213s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
213s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
213s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
213s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
213s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
213s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
213s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
216s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
219s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
219s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
220s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
221s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
221s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
221s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
221s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
225s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
225s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
225s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
225s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
228s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
229s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
229s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
229s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
229s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
229s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
233s Skip /usr/share/pymol/examples/devel/importing.py
233s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
233s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
233s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
233s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
234s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
235s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
235s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
235s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
235s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
235s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
235s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
236s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
236s Skip /usr/share/pymol/examples/devel/tkwindow.py
236s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
236s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
236s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
236s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
236s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
236s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
236s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
236s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
236s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
236s Processing new directory /usr/share/pymol/examples/chempy
236s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
237s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
237s Processing new directory /usr/share/pymol/examples/cookbook
237s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
237s Skip /usr/share/pymol/examples/cookbook/contact.pml
237s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
237s Skip /usr/share/pymol/examples/cookbook/packing.pml
237s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
237s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
237s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
237s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
237s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
237s Processing new directory /usr/share/pymol/examples/devel
237s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
237s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
237s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
240s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
243s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
244s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
245s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
249s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
249s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
249s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
249s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
252s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
252s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
252s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
252s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
253s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
253s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
256s Skip /usr/share/pymol/examples/devel/importing.py
256s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
256s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
257s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
257s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
258s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
258s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
258s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
259s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
259s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
259s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
259s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
259s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
259s Skip /usr/share/pymol/examples/devel/tkwindow.py
259s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
259s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
259s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
259s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
259s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
259s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
260s Processing new directory /usr/share/pymol/examples/launching
260s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
260s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
260s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
260s autopkgtest [16:39:45]: test command3: -----------------------]
261s command3             PASS (superficial)
261s autopkgtest [16:39:46]: test command3:  - - - - - - - - - - results - - - - - - - - - -
261s autopkgtest [16:39:46]: test command4: preparing testbed
266s Reading package lists...
266s Building dependency tree...
266s Reading state information...
266s Starting pkgProblemResolver with broken count: 0
266s Starting 2 pkgProblemResolver with broken count: 0
266s Done
266s The following NEW packages will be installed:
266s   autopkgtest-satdep
266s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
266s Need to get 0 B/700 B of archives.
266s After this operation, 0 B of additional disk space will be used.
266s Get:1 /tmp/autopkgtest.7QaTMK/4-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [700 B]
266s Selecting previously unselected package autopkgtest-satdep.
266s (Reading database ... 
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266s Preparing to unpack .../4-autopkgtest-satdep.deb ...
266s Unpacking autopkgtest-satdep (0) ...
266s Setting up autopkgtest-satdep (0) ...
268s (Reading database ... 61711 files and directories currently installed.)
268s Removing autopkgtest-satdep (0) ...
268s autopkgtest [16:39:53]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray
268s autopkgtest [16:39:53]: test command4: [-----------------------
269s Search pymol scripts in /usr/share/pymol/examples/cookbook...
269s Processing new directory /usr/share/pymol/examples/cookbook
269s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'...
269s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'...
270s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
270s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'...
272s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'...
300s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'...
302s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'...
303s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'...
307s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'...
308s autopkgtest [16:40:33]: test command4: -----------------------]
309s autopkgtest [16:40:34]: test command4:  - - - - - - - - - - results - - - - - - - - - -
309s command4             PASS (superficial)
309s autopkgtest [16:40:34]: test command5: preparing testbed
311s Reading package lists...
311s Building dependency tree...
311s Reading state information...
312s Starting pkgProblemResolver with broken count: 0
312s Starting 2 pkgProblemResolver with broken count: 0
312s Done
312s The following NEW packages will be installed:
312s   autopkgtest-satdep
312s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
312s Need to get 0 B/700 B of archives.
312s After this operation, 0 B of additional disk space will be used.
312s Get:1 /tmp/autopkgtest.7QaTMK/5-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [700 B]
312s Selecting previously unselected package autopkgtest-satdep.
312s (Reading database ... 
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312s Preparing to unpack .../5-autopkgtest-satdep.deb ...
312s Unpacking autopkgtest-satdep (0) ...
312s Setting up autopkgtest-satdep (0) ...
314s (Reading database ... 61711 files and directories currently installed.)
314s Removing autopkgtest-satdep (0) ...
314s autopkgtest [16:40:39]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml)
314s autopkgtest [16:40:39]: test command5: [-----------------------
315s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
315s  Copyright (c) Schrodinger, LLC.
315s  All Rights Reserved.
315s  
315s     Created by Warren L. DeLano, Ph.D. 
315s  
315s     PyMOL is user-supported open-source software.  Although some versions
315s     are freely available, PyMOL is not in the public domain.
315s  
315s     If PyMOL is helpful in your work or study, then please volunteer 
315s     support for our ongoing efforts to create open and affordable scientific
315s     software by purchasing a PyMOL Maintenance and/or Support subscription.
315s 
315s     More information can be found at "http://www.pymol.org".
315s  
315s     Enter "help" for a list of commands.
315s     Enter "help <command-name>" for information on a specific command.
315s 
315s  Hit ESC anytime to toggle between text and graphics.
315s 
315s  Setting: wizard_prompt_mode set to 3.
315s  Detected 2 CPU cores.  Enabled multithreaded rendering.
315s PyMOL>from pymol.wizard.annotation import load_annotated_sdf
315s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf)
315s PyMOL>wizard annotation
315s PyMOL>set wizard_prompt_mode,3
315s PyMOL>load_annotated_sdf demo.sdf
315s HBA ['[1, 25, 26, 34]\n']
315s HBD ['[20]\n']
315s ACD_NUMBER ['MFCD02681585\n']
315s SCORE ['-222.044\n']
315s MOLID ['MFCD02681585\n']
315s HBA ['[1, 21]\n']
315s HBD ['[]\n']
315s ACD_NUMBER ['MFCD01567969\n']
315s SCORE ['-219.984\n']
315s MOLID ['MFCD01567969\n']
315s HBA ['[1, 24]\n']
315s HBD ['[10, 22]\n']
315s ACD_NUMBER ['MFCD00023789\n']
315s SCORE ['-219.911\n']
315s MOLID ['MFCD00023789\n']
315s HBA ['[1, 11]\n']
315s HBD ['[3]\n']
315s ACD_NUMBER ['MFCD02579443\n']
315s SCORE ['-219.769\n']
315s MOLID ['MFCD02579443\n']
315s HBA ['[1, 11]\n']
315s HBD ['[9]\n']
315s ACD_NUMBER ['MFCD02579410\n']
315s SCORE ['-214.809\n']
315s MOLID ['MFCD02579410\n']
315s HBA ['[1, 20, 22, 27, 32]\n']
315s HBD ['[10, 20]\n']
315s ACD_NUMBER ['MFCD02579135\n']
315s SCORE ['-213.630\n']
315s MOLID ['MFCD02579135\n']
315s HBA ['[1, 11, 14, 21]\n']
315s HBD ['[]\n']
315s ACD_NUMBER ['MFCD02681468\n']
315s SCORE ['-213.462\n']
315s MOLID ['MFCD02681468\n']
315s HBA ['[1, 13, 14, 29]\n']
315s HBD ['[]\n']
315s ACD_NUMBER ['MFCD00141070\n']
315s SCORE ['-213.240\n']
315s MOLID ['MFCD00141070\n']
315s HBA ['[1, 8]\n']
315s HBD ['[]\n']
315s ACD_NUMBER ['MFCD02983625\n']
315s SCORE ['-211.422\n']
315s MOLID ['MFCD02983625\n']
315s HBA ['[1, 11]\n']
315s HBD ['[3, 12]\n']
315s ACD_NUMBER ['MFCD00115818\n']
315s SCORE ['-210.482\n']
315s MOLID ['MFCD00115818\n']
315s autopkgtest [16:40:40]: test command5: -----------------------]
315s autopkgtest [16:40:40]: test command5:  - - - - - - - - - - results - - - - - - - - - -
315s command5             PASS (superficial)
316s autopkgtest [16:40:41]: @@@@@@@@@@@@@@@@@@@@ summary
316s command1             PASS (superficial)
316s command2             PASS (superficial)
316s command3             PASS (superficial)
316s command4             PASS (superficial)
316s command5             PASS (superficial)
329s nova [W] Using flock in prodstack6-s390x
329s Creating nova instance adt-plucky-s390x-pymol-20241114-163525-juju-7f2275-prod-proposed-migration-environment-20-4720bc62-05c3-4d0f-a763-b15166529b94 from image adt/ubuntu-plucky-s390x-server-20241114.img (UUID 41a907ef-1f3c-4685-a0eb-228b0d61c6b5)...