0s autopkgtest [18:00:36]: starting date and time: 2024-11-13 18:00:36+0000 0s autopkgtest [18:00:36]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [18:00:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._1xtoos9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libxml2 --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libxml2/2.12.7+dfsg+really2.9.14-0.2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-13.secgroup --name adt-plucky-s390x-pymol-20241113-180036-juju-7f2275-prod-proposed-migration-environment-2-64bc6790-b8b5-4d7e-9566-54ac78e57bdd --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 87s autopkgtest [18:02:03]: testbed dpkg architecture: s390x 87s autopkgtest [18:02:03]: testbed apt version: 2.9.8 87s autopkgtest [18:02:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 88s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 89s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 89s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 89s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [112 kB] 89s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [646 kB] 89s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.8 kB] 89s Fetched 1949 kB in 1s (2321 kB/s) 89s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade... 91s The following packages will be upgraded: 91s libgnutls30t64 libgpgme11t64 libjson-glib-1.0-0 libjson-glib-1.0-common 91s libutempter0 libxml2 92s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 2001 kB of archives. 92s After this operation, 417 kB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libgnutls30t64 s390x 3.8.8-2ubuntu1 [950 kB] 92s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libxml2 s390x 2.12.7+dfsg+really2.9.14-0.2build1 [817 kB] 92s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 92s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 92s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libjson-glib-1.0-0 s390x 1.10.0+ds-3 [67.5 kB] 92s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libutempter0 s390x 1.2.1-4 [9708 B] 92s Fetched 2001 kB in 1s (2911 kB/s) 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 92s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_s390x.deb ... 92s Unpacking libgnutls30t64:s390x (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 93s Setting up libgnutls30t64:s390x (3.8.8-2ubuntu1) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 93s Preparing to unpack .../libxml2_2.12.7+dfsg+really2.9.14-0.2build1_s390x.deb ... 93s Unpacking libxml2:s390x (2.12.7+dfsg+really2.9.14-0.2build1) over (2.12.7+dfsg-3) ... 93s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 93s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 93s Preparing to unpack .../libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 93s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 93s Preparing to unpack .../libjson-glib-1.0-0_1.10.0+ds-3_s390x.deb ... 93s Unpacking libjson-glib-1.0-0:s390x (1.10.0+ds-3) over (1.10.0+ds-2) ... 93s Preparing to unpack .../libutempter0_1.2.1-4_s390x.deb ... 93s Unpacking libutempter0:s390x (1.2.1-4) over (1.2.1-3build1) ... 93s Setting up libutempter0:s390x (1.2.1-4) ... 93s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 93s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 93s Setting up libxml2:s390x (2.12.7+dfsg+really2.9.14-0.2build1) ... 93s Setting up libjson-glib-1.0-0:s390x (1.10.0+ds-3) ... 93s Processing triggers for libc-bin (2.40-1ubuntu3) ... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 94s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 94s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 94s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 94s Reading package lists... 94s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s autopkgtest [18:02:14]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 98s autopkgtest [18:02:14]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 101s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B] 101s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB] 102s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC 102s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 102s gpgv: issuer "emollier@debian.org" 102s gpgv: Can't check signature: No public key 102s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found 103s autopkgtest [18:02:19]: testing package pymol version 3.0.0+dfsg-1 103s autopkgtest [18:02:19]: build not needed 107s autopkgtest [18:02:23]: test command1: preparing testbed 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Starting pkgProblemResolver with broken count: 0 108s Starting 2 pkgProblemResolver with broken count: 0 108s Done 108s The following additional packages will be installed: 108s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 108s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 108s libdouble-conversion3 libdrm-amdgpu1 libdrm-radeon1 libegl-mesa0 libegl1 108s libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri 108s libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 108s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 108s libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 108s libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libqt5core5t64 108s libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 108s libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 108s libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common 108s libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 108s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 108s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 108s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 108s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 108s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 108s python3-numpy python3-opengl python3-pymol python3-pyqt5 108s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 108s Suggested packages: 108s cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins 108s libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest 108s libgle3 python3-tk 108s Recommended packages: 108s libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme 108s qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc 108s | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers 108s | vulkan-icd apbs libglut-dev 108s The following NEW packages will be installed: 108s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 108s fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data 108s libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1 108s libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libfreetype6 libgbm1 108s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa 108s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 108s libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin libinput10 108s libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 108s libopengl0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 108s libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 108s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 108s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 108s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 108s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 108s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 108s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 108s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 108s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 108s python3-numpy python3-opengl python3-pymol python3-pyqt5 108s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 108s 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 46.9 MB/46.9 MB of archives. 108s After this operation, 180 MB of additional disk space will be used. 108s Get:1 /tmp/autopkgtest.chTVR2/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 109s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 109s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB] 109s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 109s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common-data s390x 0.8-13ubuntu6 [29.7 kB] 109s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-common3 s390x 0.8-13ubuntu6 [24.1 kB] 109s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libavahi-client3 s390x 0.8-13ubuntu6 [27.2 kB] 109s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 109s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libcups2t64 s390x 2.4.10-1ubuntu2 [281 kB] 109s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x libdouble-conversion3 s390x 3.3.0-1build1 [43.9 kB] 109s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libdrm-amdgpu1 s390x 2.4.123-1 [21.2 kB] 109s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libdrm-radeon1 s390x 2.4.123-1 [22.4 kB] 109s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-server0 s390x 1.23.0-1 [36.5 kB] 109s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 109s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libglapi-mesa s390x 24.2.3-1ubuntu1 [67.8 kB] 109s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 109s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri2-0 s390x 1.17.0-2 [7448 B] 109s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 109s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 109s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 109s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 109s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 109s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x mesa-libgallium s390x 24.2.3-1ubuntu1 [7709 kB] 110s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libgbm1 s390x 24.2.3-1ubuntu1 [33.7 kB] 110s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libwayland-client0 s390x 1.23.0-1 [27.6 kB] 110s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 110s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libegl-mesa0 s390x 24.2.3-1ubuntu1 [133 kB] 110s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 110s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libvulkan1 s390x 1.3.296.0-1 [143 kB] 110s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1-mesa-dri s390x 24.2.3-1ubuntu1 [34.4 kB] 110s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 110s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 110s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 110s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 110s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libglx-mesa0 s390x 24.2.3-1ubuntu1 [175 kB] 110s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 110s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 110s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 110s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 110s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 110s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.0.1-1 [536 kB] 110s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 110s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-4ubuntu3 [1426 kB] 110s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-4ubuntu3 [58.0 kB] 110s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 110s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 110s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom-common all 2.13.0-1 [98.6 kB] 110s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libwacom9 s390x 2.13.0-1 [25.4 kB] 110s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libinput-bin s390x 1.26.2-1 [22.8 kB] 110s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libmtdev1t64 s390x 1.1.6-1.2 [15.6 kB] 110s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libinput10 s390x 1.26.2-1 [135 kB] 110s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB] 110s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 110s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 110s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB] 110s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf19t64 s390x 1:4.9.2-6ubuntu1 [496 kB] 110s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.42-4ubuntu3 [236 kB] 110s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-1ubuntu1 [2239 kB] 110s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-1ubuntu1 [240 kB] 110s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB] 110s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-1ubuntu1 [788 kB] 110s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 110s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB] 110s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-util1 s390x 0.4.0-1build3 [10.6 kB] 110s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB] 110s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-keysyms1 s390x 0.4.0-1build4 [8216 B] 110s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 110s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render-util0 s390x 0.3.9-1build4 [9550 B] 110s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B] 110s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B] 110s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB] 110s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB] 110s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libxkbcommon-x11-0 s390x 1.6.0-1build1 [14.9 kB] 110s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 110s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-1ubuntu1 [4188 kB] 110s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-1ubuntu1 [2718 kB] 110s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-1ubuntu1 [129 kB] 110s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5designer5 s390x 5.15.15-2 [2899 kB] 111s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-1ubuntu1 [130 kB] 111s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5help5 s390x 5.15.15-2 [172 kB] 111s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-1ubuntu1 [156 kB] 111s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-1ubuntu1 [218 kB] 111s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-1ubuntu1 [156 kB] 111s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 111s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 111s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 111s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-opengl all 3.1.7+dfsg-1 [612 kB] 111s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.sip s390x 12.15.0-1 [62.7 kB] 111s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-1build1 [2878 kB] 111s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-1build1 [140 kB] 111s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol-data all 3.0.0+dfsg-1 [1394 kB] 111s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pymol s390x 3.0.0+dfsg-1 [4207 kB] 111s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x pymol all 3.0.0+dfsg-1 [126 kB] 111s Fetched 46.9 MB in 3s (17.7 MB/s) 111s Selecting previously unselected package libfreetype6:s390x. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 112s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 112s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 112s Selecting previously unselected package fonts-dejavu-mono. 112s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-mono (2.37-8) ... 112s Selecting previously unselected package fonts-dejavu-core. 112s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-core (2.37-8) ... 112s Selecting previously unselected package fontconfig-config. 112s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 112s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 112s Selecting previously unselected package libfontconfig1:s390x. 112s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 112s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 112s Selecting previously unselected package fontconfig. 112s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ... 112s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 112s Selecting previously unselected package libaec0:s390x. 112s Preparing to unpack .../06-libaec0_1.1.3-1_s390x.deb ... 112s Unpacking libaec0:s390x (1.1.3-1) ... 112s Selecting previously unselected package libavahi-common-data:s390x. 112s Preparing to unpack .../07-libavahi-common-data_0.8-13ubuntu6_s390x.deb ... 112s Unpacking libavahi-common-data:s390x (0.8-13ubuntu6) ... 112s Selecting previously unselected package libavahi-common3:s390x. 112s Preparing to unpack .../08-libavahi-common3_0.8-13ubuntu6_s390x.deb ... 112s Unpacking libavahi-common3:s390x (0.8-13ubuntu6) ... 112s Selecting previously unselected package libavahi-client3:s390x. 112s Preparing to unpack .../09-libavahi-client3_0.8-13ubuntu6_s390x.deb ... 112s Unpacking libavahi-client3:s390x (0.8-13ubuntu6) ... 112s Selecting previously unselected package libblas3:s390x. 112s Preparing to unpack .../10-libblas3_3.12.0-3build2_s390x.deb ... 112s Unpacking libblas3:s390x (3.12.0-3build2) ... 112s Selecting previously unselected package libcups2t64:s390x. 112s Preparing to unpack .../11-libcups2t64_2.4.10-1ubuntu2_s390x.deb ... 112s Unpacking libcups2t64:s390x (2.4.10-1ubuntu2) ... 112s Selecting previously unselected package libdouble-conversion3:s390x. 112s Preparing to unpack .../12-libdouble-conversion3_3.3.0-1build1_s390x.deb ... 112s Unpacking libdouble-conversion3:s390x (3.3.0-1build1) ... 112s Selecting previously unselected package libdrm-amdgpu1:s390x. 112s Preparing to unpack .../13-libdrm-amdgpu1_2.4.123-1_s390x.deb ... 112s Unpacking libdrm-amdgpu1:s390x (2.4.123-1) ... 112s Selecting previously unselected package libdrm-radeon1:s390x. 112s Preparing to unpack .../14-libdrm-radeon1_2.4.123-1_s390x.deb ... 112s Unpacking libdrm-radeon1:s390x (2.4.123-1) ... 112s Selecting previously unselected package libwayland-server0:s390x. 112s Preparing to unpack .../15-libwayland-server0_1.23.0-1_s390x.deb ... 112s Unpacking libwayland-server0:s390x (1.23.0-1) ... 112s Selecting previously unselected package libxcb-randr0:s390x. 112s Preparing to unpack .../16-libxcb-randr0_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 112s Selecting previously unselected package libglapi-mesa:s390x. 112s Preparing to unpack .../17-libglapi-mesa_24.2.3-1ubuntu1_s390x.deb ... 112s Unpacking libglapi-mesa:s390x (24.2.3-1ubuntu1) ... 112s Selecting previously unselected package libx11-xcb1:s390x. 112s Preparing to unpack .../18-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 112s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 112s Selecting previously unselected package libxcb-dri2-0:s390x. 112s Preparing to unpack .../19-libxcb-dri2-0_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-dri2-0:s390x (1.17.0-2) ... 112s Selecting previously unselected package libxcb-dri3-0:s390x. 112s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 112s Selecting previously unselected package libxcb-present0:s390x. 112s Preparing to unpack .../21-libxcb-present0_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-present0:s390x (1.17.0-2) ... 112s Selecting previously unselected package libxcb-sync1:s390x. 112s Preparing to unpack .../22-libxcb-sync1_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 112s Selecting previously unselected package libxcb-xfixes0:s390x. 112s Preparing to unpack .../23-libxcb-xfixes0_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 112s Selecting previously unselected package libxshmfence1:s390x. 112s Preparing to unpack .../24-libxshmfence1_1.3-1build5_s390x.deb ... 112s Unpacking libxshmfence1:s390x (1.3-1build5) ... 112s Selecting previously unselected package mesa-libgallium:s390x. 112s Preparing to unpack .../25-mesa-libgallium_24.2.3-1ubuntu1_s390x.deb ... 112s Unpacking mesa-libgallium:s390x (24.2.3-1ubuntu1) ... 112s Selecting previously unselected package libgbm1:s390x. 112s Preparing to unpack .../26-libgbm1_24.2.3-1ubuntu1_s390x.deb ... 112s Unpacking libgbm1:s390x (24.2.3-1ubuntu1) ... 112s Selecting previously unselected package libwayland-client0:s390x. 112s Preparing to unpack .../27-libwayland-client0_1.23.0-1_s390x.deb ... 112s Unpacking libwayland-client0:s390x (1.23.0-1) ... 112s Selecting previously unselected package libxcb-shm0:s390x. 112s Preparing to unpack .../28-libxcb-shm0_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 112s Selecting previously unselected package libegl-mesa0:s390x. 112s Preparing to unpack .../29-libegl-mesa0_24.2.3-1ubuntu1_s390x.deb ... 112s Unpacking libegl-mesa0:s390x (24.2.3-1ubuntu1) ... 112s Selecting previously unselected package libgfortran5:s390x. 112s Preparing to unpack .../30-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 112s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 112s Selecting previously unselected package libvulkan1:s390x. 112s Preparing to unpack .../31-libvulkan1_1.3.296.0-1_s390x.deb ... 112s Unpacking libvulkan1:s390x (1.3.296.0-1) ... 112s Selecting previously unselected package libgl1-mesa-dri:s390x. 112s Preparing to unpack .../32-libgl1-mesa-dri_24.2.3-1ubuntu1_s390x.deb ... 112s Unpacking libgl1-mesa-dri:s390x (24.2.3-1ubuntu1) ... 112s Selecting previously unselected package libglvnd0:s390x. 112s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_s390x.deb ... 112s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 112s Selecting previously unselected package libxcb-glx0:s390x. 112s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_s390x.deb ... 112s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 112s Selecting previously unselected package libxfixes3:s390x. 112s Preparing to unpack .../35-libxfixes3_1%3a6.0.0-2build1_s390x.deb ... 112s Unpacking libxfixes3:s390x (1:6.0.0-2build1) ... 112s Selecting previously unselected package libxxf86vm1:s390x. 112s Preparing to unpack .../36-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 112s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 112s Selecting previously unselected package libglx-mesa0:s390x. 112s Preparing to unpack .../37-libglx-mesa0_24.2.3-1ubuntu1_s390x.deb ... 112s Unpacking libglx-mesa0:s390x (24.2.3-1ubuntu1) ... 112s Selecting previously unselected package libglx0:s390x. 112s Preparing to unpack .../38-libglx0_1.7.0-1build1_s390x.deb ... 112s Unpacking libglx0:s390x (1.7.0-1build1) ... 112s Selecting previously unselected package libgl1:s390x. 112s Preparing to unpack .../39-libgl1_1.7.0-1build1_s390x.deb ... 112s Unpacking libgl1:s390x (1.7.0-1build1) ... 112s Selecting previously unselected package libglew2.2:s390x. 112s Preparing to unpack .../40-libglew2.2_2.2.0-4build1_s390x.deb ... 112s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 112s Selecting previously unselected package libgomp1:s390x. 112s Preparing to unpack .../41-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 112s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 112s Selecting previously unselected package libgraphite2-3:s390x. 112s Preparing to unpack .../42-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 112s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 112s Selecting previously unselected package libharfbuzz0b:s390x. 112s Preparing to unpack .../43-libharfbuzz0b_10.0.1-1_s390x.deb ... 112s Unpacking libharfbuzz0b:s390x (10.0.1-1) ... 112s Selecting previously unselected package libsz2:s390x. 112s Preparing to unpack .../44-libsz2_1.1.3-1_s390x.deb ... 112s Unpacking libsz2:s390x (1.1.3-1) ... 112s Selecting previously unselected package libhdf5-103-1t64:s390x. 112s Preparing to unpack .../45-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_s390x.deb ... 112s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 112s Selecting previously unselected package libhdf5-hl-100t64:s390x. 112s Preparing to unpack .../46-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_s390x.deb ... 112s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 112s Selecting previously unselected package x11-common. 112s Preparing to unpack .../47-x11-common_1%3a7.7+23ubuntu3_all.deb ... 112s Unpacking x11-common (1:7.7+23ubuntu3) ... 112s Selecting previously unselected package libice6:s390x. 112s Preparing to unpack .../48-libice6_2%3a1.1.1-1_s390x.deb ... 112s Unpacking libice6:s390x (2:1.1.1-1) ... 112s Selecting previously unselected package libwacom-common. 112s Preparing to unpack .../49-libwacom-common_2.13.0-1_all.deb ... 112s Unpacking libwacom-common (2.13.0-1) ... 112s Selecting previously unselected package libwacom9:s390x. 112s Preparing to unpack .../50-libwacom9_2.13.0-1_s390x.deb ... 112s Unpacking libwacom9:s390x (2.13.0-1) ... 112s Selecting previously unselected package libinput-bin. 112s Preparing to unpack .../51-libinput-bin_1.26.2-1_s390x.deb ... 112s Unpacking libinput-bin (1.26.2-1) ... 112s Selecting previously unselected package libmtdev1t64:s390x. 112s Preparing to unpack .../52-libmtdev1t64_1.1.6-1.2_s390x.deb ... 112s Unpacking libmtdev1t64:s390x (1.1.6-1.2) ... 112s Selecting previously unselected package libinput10:s390x. 112s Preparing to unpack .../53-libinput10_1.26.2-1_s390x.deb ... 112s Unpacking libinput10:s390x (1.26.2-1) ... 112s Selecting previously unselected package libjpeg-turbo8:s390x. 112s Preparing to unpack .../54-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ... 112s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 112s Selecting previously unselected package libjpeg8:s390x. 112s Preparing to unpack .../55-libjpeg8_8c-2ubuntu11_s390x.deb ... 112s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 112s Selecting previously unselected package liblapack3:s390x. 112s Preparing to unpack .../56-liblapack3_3.12.0-3build2_s390x.deb ... 112s Unpacking liblapack3:s390x (3.12.0-3build2) ... 112s Selecting previously unselected package libmd4c0:s390x. 112s Preparing to unpack .../57-libmd4c0_0.5.2-2_s390x.deb ... 112s Unpacking libmd4c0:s390x (0.5.2-2) ... 112s Selecting previously unselected package libnetcdf19t64:s390x. 112s Preparing to unpack .../58-libnetcdf19t64_1%3a4.9.2-6ubuntu1_s390x.deb ... 112s Unpacking libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ... 112s Selecting previously unselected package libpcre2-16-0:s390x. 112s Preparing to unpack .../59-libpcre2-16-0_10.42-4ubuntu3_s390x.deb ... 112s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu3) ... 112s Selecting previously unselected package libqt5core5t64:s390x. 112s Preparing to unpack .../60-libqt5core5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 112s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libqt5dbus5t64:s390x. 113s Preparing to unpack .../61-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libegl1:s390x. 113s Preparing to unpack .../62-libegl1_1.7.0-1build1_s390x.deb ... 113s Unpacking libegl1:s390x (1.7.0-1build1) ... 113s Selecting previously unselected package libqt5network5t64:s390x. 113s Preparing to unpack .../63-libqt5network5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libsm6:s390x. 113s Preparing to unpack .../64-libsm6_2%3a1.2.4-1_s390x.deb ... 113s Unpacking libsm6:s390x (2:1.2.4-1) ... 113s Selecting previously unselected package libxcb-icccm4:s390x. 113s Preparing to unpack .../65-libxcb-icccm4_0.4.2-1_s390x.deb ... 113s Unpacking libxcb-icccm4:s390x (0.4.2-1) ... 113s Selecting previously unselected package libxcb-util1:s390x. 113s Preparing to unpack .../66-libxcb-util1_0.4.0-1build3_s390x.deb ... 113s Unpacking libxcb-util1:s390x (0.4.0-1build3) ... 113s Selecting previously unselected package libxcb-image0:s390x. 113s Preparing to unpack .../67-libxcb-image0_0.4.0-2build1_s390x.deb ... 113s Unpacking libxcb-image0:s390x (0.4.0-2build1) ... 113s Selecting previously unselected package libxcb-keysyms1:s390x. 113s Preparing to unpack .../68-libxcb-keysyms1_0.4.0-1build4_s390x.deb ... 113s Unpacking libxcb-keysyms1:s390x (0.4.0-1build4) ... 113s Selecting previously unselected package libxcb-render0:s390x. 113s Preparing to unpack .../69-libxcb-render0_1.17.0-2_s390x.deb ... 113s Unpacking libxcb-render0:s390x (1.17.0-2) ... 113s Selecting previously unselected package libxcb-render-util0:s390x. 113s Preparing to unpack .../70-libxcb-render-util0_0.3.9-1build4_s390x.deb ... 113s Unpacking libxcb-render-util0:s390x (0.3.9-1build4) ... 113s Selecting previously unselected package libxcb-shape0:s390x. 113s Preparing to unpack .../71-libxcb-shape0_1.17.0-2_s390x.deb ... 113s Unpacking libxcb-shape0:s390x (1.17.0-2) ... 113s Selecting previously unselected package libxcb-xinerama0:s390x. 113s Preparing to unpack .../72-libxcb-xinerama0_1.17.0-2_s390x.deb ... 113s Unpacking libxcb-xinerama0:s390x (1.17.0-2) ... 113s Selecting previously unselected package libxcb-xinput0:s390x. 113s Preparing to unpack .../73-libxcb-xinput0_1.17.0-2_s390x.deb ... 113s Unpacking libxcb-xinput0:s390x (1.17.0-2) ... 113s Selecting previously unselected package libxcb-xkb1:s390x. 113s Preparing to unpack .../74-libxcb-xkb1_1.17.0-2_s390x.deb ... 113s Unpacking libxcb-xkb1:s390x (1.17.0-2) ... 113s Selecting previously unselected package libxkbcommon-x11-0:s390x. 113s Preparing to unpack .../75-libxkbcommon-x11-0_1.6.0-1build1_s390x.deb ... 113s Unpacking libxkbcommon-x11-0:s390x (1.6.0-1build1) ... 113s Selecting previously unselected package libxrender1:s390x. 113s Preparing to unpack .../76-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 113s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 113s Selecting previously unselected package libqt5gui5t64:s390x. 113s Preparing to unpack .../77-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libqt5widgets5t64:s390x. 113s Preparing to unpack .../78-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libqt5xml5t64:s390x. 113s Preparing to unpack .../79-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libqt5designer5:s390x. 113s Preparing to unpack .../80-libqt5designer5_5.15.15-2_s390x.deb ... 113s Unpacking libqt5designer5:s390x (5.15.15-2) ... 113s Selecting previously unselected package libqt5sql5t64:s390x. 113s Preparing to unpack .../81-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5sql5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libqt5help5:s390x. 113s Preparing to unpack .../82-libqt5help5_5.15.15-2_s390x.deb ... 113s Unpacking libqt5help5:s390x (5.15.15-2) ... 113s Selecting previously unselected package libqt5opengl5t64:s390x. 113s Preparing to unpack .../83-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5opengl5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libqt5printsupport5t64:s390x. 113s Preparing to unpack .../84-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5printsupport5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package libqt5test5t64:s390x. 113s Preparing to unpack .../85-libqt5test5t64_5.15.15+dfsg-1ubuntu1_s390x.deb ... 113s Unpacking libqt5test5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 113s Selecting previously unselected package python3-numpy. 113s Preparing to unpack .../86-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 113s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 113s Selecting previously unselected package libopengl0:s390x. 113s Preparing to unpack .../87-libopengl0_1.7.0-1build1_s390x.deb ... 113s Unpacking libopengl0:s390x (1.7.0-1build1) ... 113s Selecting previously unselected package libglu1-mesa:s390x. 113s Preparing to unpack .../88-libglu1-mesa_9.0.2-1.1build1_s390x.deb ... 113s Unpacking libglu1-mesa:s390x (9.0.2-1.1build1) ... 113s Selecting previously unselected package python3-opengl. 113s Preparing to unpack .../89-python3-opengl_3.1.7+dfsg-1_all.deb ... 113s Unpacking python3-opengl (3.1.7+dfsg-1) ... 113s Selecting previously unselected package python3-pyqt5.sip. 113s Preparing to unpack .../90-python3-pyqt5.sip_12.15.0-1_s390x.deb ... 113s Unpacking python3-pyqt5.sip (12.15.0-1) ... 113s Selecting previously unselected package python3-pyqt5. 113s Preparing to unpack .../91-python3-pyqt5_5.15.11+dfsg-1build1_s390x.deb ... 113s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 113s Selecting previously unselected package python3-pyqt5.qtopengl. 113s Preparing to unpack .../92-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_s390x.deb ... 113s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 113s Selecting previously unselected package pymol-data. 113s Preparing to unpack .../93-pymol-data_3.0.0+dfsg-1_all.deb ... 113s Unpacking pymol-data (3.0.0+dfsg-1) ... 113s Selecting previously unselected package python3-pymol. 113s Preparing to unpack .../94-python3-pymol_3.0.0+dfsg-1_s390x.deb ... 113s Unpacking python3-pymol (3.0.0+dfsg-1) ... 113s Selecting previously unselected package pymol. 114s Preparing to unpack .../95-pymol_3.0.0+dfsg-1_all.deb ... 114s Unpacking pymol (3.0.0+dfsg-1) ... 114s Selecting previously unselected package autopkgtest-satdep. 114s Preparing to unpack .../96-1-autopkgtest-satdep.deb ... 114s Unpacking autopkgtest-satdep (0) ... 114s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 114s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 114s Setting up libwayland-server0:s390x (1.23.0-1) ... 114s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 114s Setting up libdouble-conversion3:s390x (3.3.0-1build1) ... 114s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 114s Setting up libxcb-xinput0:s390x (1.17.0-2) ... 114s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 114s Setting up libxcb-render0:s390x (1.17.0-2) ... 114s Setting up libdrm-radeon1:s390x (2.4.123-1) ... 114s Setting up libglvnd0:s390x (1.7.0-1build1) ... 114s Setting up libxcb-glx0:s390x (1.17.0-2) ... 114s Setting up libxcb-keysyms1:s390x (0.4.0-1build4) ... 114s Setting up libxcb-shape0:s390x (1.17.0-2) ... 114s Setting up x11-common (1:7.7+23ubuntu3) ... 114s Setting up libxcb-render-util0:s390x (0.3.9-1build4) ... 114s Setting up libxcb-shm0:s390x (1.17.0-2) ... 114s Setting up libxcb-icccm4:s390x (0.4.2-1) ... 114s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 114s Setting up libpcre2-16-0:s390x (10.42-4ubuntu3) ... 114s Setting up libaec0:s390x (1.1.3-1) ... 114s Setting up libopengl0:s390x (1.7.0-1build1) ... 114s Setting up libxcb-util1:s390x (0.4.0-1build3) ... 114s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 114s Setting up libxcb-xkb1:s390x (1.17.0-2) ... 114s Setting up libxcb-image0:s390x (0.4.0-2build1) ... 114s Setting up libxcb-present0:s390x (1.17.0-2) ... 114s Setting up libqt5core5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 114s Setting up libblas3:s390x (3.12.0-3build2) ... 114s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 114s Setting up libxcb-xinerama0:s390x (1.17.0-2) ... 114s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 114s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 114s Setting up libxcb-sync1:s390x (1.17.0-2) ... 114s Setting up libavahi-common-data:s390x (0.8-13ubuntu6) ... 114s Setting up pymol-data (3.0.0+dfsg-1) ... 114s Setting up libxkbcommon-x11-0:s390x (1.6.0-1build1) ... 114s Setting up fonts-dejavu-mono (2.37-8) ... 114s Setting up fonts-dejavu-core (2.37-8) ... 114s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ... 114s Setting up libglapi-mesa:s390x (24.2.3-1ubuntu1) ... 114s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 114s Setting up libvulkan1:s390x (1.3.296.0-1) ... 114s Setting up libxcb-dri2-0:s390x (1.17.0-2) ... 114s Setting up python3-pyqt5.sip (12.15.0-1) ... 114s Setting up libmtdev1t64:s390x (1.1.6-1.2) ... 114s Setting up libxshmfence1:s390x (1.3-1build5) ... 114s Setting up libxcb-randr0:s390x (1.17.0-2) ... 114s Setting up libqt5sql5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 114s Setting up libmd4c0:s390x (0.5.2-2) ... 114s Setting up libharfbuzz0b:s390x (10.0.1-1) ... 114s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ... 114s Setting up libsz2:s390x (1.1.3-1) ... 114s Setting up libdrm-amdgpu1:s390x (2.4.123-1) ... 114s Setting up libwacom-common (2.13.0-1) ... 114s Setting up libwayland-client0:s390x (1.23.0-1) ... 114s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 114s Setting up libice6:s390x (2:1.1.1-1) ... 114s Setting up mesa-libgallium:s390x (24.2.3-1ubuntu1) ... 114s Setting up liblapack3:s390x (3.12.0-3build2) ... 114s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 114s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 114s Setting up libgbm1:s390x (24.2.3-1ubuntu1) ... 114s Setting up libwacom9:s390x (2.13.0-1) ... 114s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 114s Setting up libgl1-mesa-dri:s390x (24.2.3-1ubuntu1) ... 114s Setting up libqt5network5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 114s Setting up libavahi-common3:s390x (0.8-13ubuntu6) ... 114s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 114s Setting up libqt5test5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 114s Setting up libinput-bin (1.26.2-1) ... 114s Setting up libegl-mesa0:s390x (24.2.3-1ubuntu1) ... 114s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 116s Setting up libegl1:s390x (1.7.0-1build1) ... 116s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 116s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-4ubuntu3) ... 116s Setting up libsm6:s390x (2:1.2.4-1) ... 116s Setting up libavahi-client3:s390x (0.8-13ubuntu6) ... 116s Setting up libinput10:s390x (1.26.2-1) ... 116s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-4ubuntu3) ... 116s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 118s Regenerating fonts cache... done. 118s Setting up libnetcdf19t64:s390x (1:4.9.2-6ubuntu1) ... 118s Setting up libglx-mesa0:s390x (24.2.3-1ubuntu1) ... 118s Setting up libglx0:s390x (1.7.0-1build1) ... 118s Setting up libgl1:s390x (1.7.0-1build1) ... 118s Setting up libglew2.2:s390x (2.2.0-4build1) ... 118s Setting up libcups2t64:s390x (2.4.10-1ubuntu2) ... 118s Setting up python3-opengl (3.1.7+dfsg-1) ... 118s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 118s '''OpenGL extension AMD.vertex_shader_tessellator 119s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 119s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 119s Setting up libqt5help5:s390x (5.15.15-2) ... 119s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 119s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-1ubuntu1) ... 119s Setting up libqt5designer5:s390x (5.15.15-2) ... 119s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 119s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 119s Setting up python3-pymol (3.0.0+dfsg-1) ... 120s Setting up pymol (3.0.0+dfsg-1) ... 120s Setting up autopkgtest-satdep (0) ... 120s Processing triggers for man-db (2.12.1-3) ... 121s Processing triggers for udev (256.5-2ubuntu4) ... 121s Processing triggers for libc-bin (2.40-1ubuntu3) ... 124s (Reading database ... 61684 files and directories currently installed.) 124s Removing autopkgtest-satdep (0) ... 125s autopkgtest [18:02:41]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 125s autopkgtest [18:02:41]: test command1: [----------------------- 125s Search pymol scripts in /tmp/autopkgtest.chTVR2/build.dwv/src/examples... 125s Processing new directory /tmp/autopkgtest.chTVR2/build.dwv/src/examples 125s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/chempy/generate_amber.py'... 125s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/chempy/generate_mmff.py'... 125s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/area_diff.pml'... 126s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/build_peptide.py'... 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/contact.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/dali.py 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/density.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/groel_es.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/multiclip_ray.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/packing.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/packsurf.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/ref_frame.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/ribosome.pml 126s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/scenes2movie.pml 126s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/seq_match_sele.pml'... 128s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/ss_xfer.pml 128s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/symsph.py'... 128s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/brick01.py'... 128s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo01.py'... 128s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo02.py'... 131s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo03.py'... 134s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo04.py'... 134s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo05.py'... 135s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo06.py'... 136s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo07.py'... 136s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo08.py'... 136s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_3Dtext01.py'... 136s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_axes.py'... 136s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_label_hack.py'... 139s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_plane.py'... 140s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/chempy_model01.py'... 140s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/chempy_model02.py'... 140s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/chempy_model03.py'... 143s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/click_ordered_list.py'... 143s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/count_molecules.py'... 143s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/extend_demo01.py'... 143s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/gl01.py'... 144s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/gl02.py'... 144s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/gl03.py'... 147s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/importing.py 147s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/link_demo.py'... 147s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/membrane.py'... 148s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/mutate01.pml'... 148s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/mutate02.py'... 149s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/my_ext_gui.py'... 149s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/particle01.py'... 150s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/particle02.py'... 150s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/pick_wiz.py'... 150s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/povray01.py 150s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/scenes_to_movie01.pml'... 150s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/sd_annotate.pml 150s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/sele_wiz.py'... 150s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/start_pymol.py 150s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/syncmol.py'... 150s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/tkwindow.py 150s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/webgui01.py'... 150s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/webgui02.py'... 151s /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 151s mo = re.search("molid\=([A-Z0-9]+)",self.path) 151s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/xmlrpc01.py 151s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/xmlrpc02.py'... 151s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/launching/launch_demo.py'... 151s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/launching/launch_viewer1.py'... 151s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/launching/launch_viewer2.py'... 151s Processing new directory /tmp/autopkgtest.chTVR2/build.dwv/src/examples/chempy 151s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/chempy/generate_amber.py'... 151s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/chempy/generate_mmff.py'... 151s Processing new directory /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook 151s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/area_diff.pml'... 152s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/build_peptide.py'... 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/contact.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/dali.py 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/density.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/groel_es.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/multiclip_ray.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/packing.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/packsurf.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/ref_frame.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/ribosome.pml 152s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/scenes2movie.pml 152s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/seq_match_sele.pml'... 154s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/ss_xfer.pml 154s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/cookbook/symsph.py'... 154s Processing new directory /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel 154s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/brick01.py'... 154s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo01.py'... 154s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo02.py'... 158s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo03.py'... 161s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo04.py'... 161s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo05.py'... 161s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo06.py'... 162s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo07.py'... 162s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo08.py'... 162s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_3Dtext01.py'... 163s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_axes.py'... 163s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_label_hack.py'... 166s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/cgo_plane.py'... 166s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/chempy_model01.py'... 166s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/chempy_model02.py'... 166s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/chempy_model03.py'... 169s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/click_ordered_list.py'... 170s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/count_molecules.py'... 170s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/extend_demo01.py'... 170s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/gl01.py'... 170s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/gl02.py'... 170s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/gl03.py'... 174s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/importing.py 174s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/link_demo.py'... 174s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/membrane.py'... 174s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/mutate01.pml'... 174s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/mutate02.py'... 176s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/my_ext_gui.py'... 176s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/particle01.py'... 176s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/particle02.py'... 176s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/pick_wiz.py'... 176s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/povray01.py 176s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/scenes_to_movie01.pml'... 176s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/sd_annotate.pml 176s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/sele_wiz.py'... 177s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/start_pymol.py 177s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/syncmol.py'... 177s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/tkwindow.py 177s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/webgui01.py'... 177s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/webgui02.py'... 177s /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 177s mo = re.search("molid\=([A-Z0-9]+)",self.path) 177s Skip /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/xmlrpc01.py 177s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/devel/xmlrpc02.py'... 177s Processing new directory /tmp/autopkgtest.chTVR2/build.dwv/src/examples/launching 177s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/launching/launch_demo.py'... 177s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/launching/launch_viewer1.py'... 177s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/examples/launching/launch_viewer2.py'... 178s autopkgtest [18:03:34]: test command1: -----------------------] 178s command1 PASS (superficial) 178s autopkgtest [18:03:34]: test command1: - - - - - - - - - - results - - - - - - - - - - 179s autopkgtest [18:03:35]: test command2: preparing testbed 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 0 180s Starting 2 pkgProblemResolver with broken count: 0 180s Done 180s The following NEW packages will be installed: 180s autopkgtest-satdep 180s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 0 B/708 B of archives. 180s After this operation, 0 B of additional disk space will be used. 180s Get:1 /tmp/autopkgtest.chTVR2/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 180s Selecting previously unselected package autopkgtest-satdep. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61684 files and directories currently installed.) 180s Preparing to unpack .../2-autopkgtest-satdep.deb ... 180s Unpacking autopkgtest-satdep (0) ... 181s Setting up autopkgtest-satdep (0) ... 182s (Reading database ... 61684 files and directories currently installed.) 182s Removing autopkgtest-satdep (0) ... 183s autopkgtest [18:03:39]: test command2: sh debian/tests/call-pymol-scripts data/demo 183s autopkgtest [18:03:39]: test command2: [----------------------- 183s Search pymol scripts in /tmp/autopkgtest.chTVR2/build.dwv/src/data/demo... 183s Processing new directory /tmp/autopkgtest.chTVR2/build.dwv/src/data/demo 183s Run 'pymol -c /tmp/autopkgtest.chTVR2/build.dwv/src/data/demo/cgo03.py'... 186s autopkgtest [18:03:42]: test command2: -----------------------] 187s command2 PASS (superficial) 187s autopkgtest [18:03:43]: test command2: - - - - - - - - - - results - - - - - - - - - - 187s autopkgtest [18:03:43]: test command3: preparing testbed 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 189s Starting pkgProblemResolver with broken count: 0 189s Starting 2 pkgProblemResolver with broken count: 0 189s Done 189s The following NEW packages will be installed: 189s autopkgtest-satdep 189s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 0 B/700 B of archives. 189s After this operation, 0 B of additional disk space will be used. 189s Get:1 /tmp/autopkgtest.chTVR2/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [700 B] 189s Selecting previously unselected package autopkgtest-satdep. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61684 files and directories currently installed.) 189s Preparing to unpack .../3-autopkgtest-satdep.deb ... 189s Unpacking autopkgtest-satdep (0) ... 189s Setting up autopkgtest-satdep (0) ... 190s (Reading database ... 61684 files and directories currently installed.) 190s Removing autopkgtest-satdep (0) ... 191s autopkgtest [18:03:47]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 191s autopkgtest [18:03:47]: test command3: [----------------------- 191s Search pymol scripts in /usr/share/pymol/examples... 191s Processing new directory /usr/share/pymol/examples 191s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 191s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 191s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 191s Skip /usr/share/pymol/examples/cookbook/contact.pml 191s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 191s Skip /usr/share/pymol/examples/cookbook/packing.pml 191s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 191s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 191s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 191s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 191s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 191s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 192s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 192s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 195s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 200s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 200s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 200s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 200s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 200s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 203s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 203s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 203s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 204s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 208s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 211s Skip /usr/share/pymol/examples/devel/importing.py 211s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 212s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 214s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 214s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 214s Skip /usr/share/pymol/examples/devel/tkwindow.py 214s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 215s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 215s mo = re.search("molid\=([A-Z0-9]+)",self.path) 215s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 215s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 215s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 215s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 215s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 215s Processing new directory /usr/share/pymol/examples/chempy 215s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 215s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 215s Processing new directory /usr/share/pymol/examples/cookbook 215s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 215s Skip /usr/share/pymol/examples/cookbook/contact.pml 215s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 215s Skip /usr/share/pymol/examples/cookbook/packing.pml 215s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 215s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 215s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 215s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 215s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 215s Processing new directory /usr/share/pymol/examples/devel 215s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 216s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 216s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 219s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 227s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 227s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 227s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 235s Skip /usr/share/pymol/examples/devel/importing.py 235s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 236s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 238s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 238s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 238s Skip /usr/share/pymol/examples/devel/tkwindow.py 238s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 238s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 238s mo = re.search("molid\=([A-Z0-9]+)",self.path) 238s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 238s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 239s Processing new directory /usr/share/pymol/examples/launching 239s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 239s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 239s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 239s autopkgtest [18:04:35]: test command3: -----------------------] 240s command3 PASS (superficial) 240s autopkgtest [18:04:36]: test command3: - - - - - - - - - - results - - - - - - - - - - 240s autopkgtest [18:04:36]: test command4: preparing testbed 241s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s Starting pkgProblemResolver with broken count: 0 241s Starting 2 pkgProblemResolver with broken count: 0 241s Done 242s The following NEW packages will be installed: 242s autopkgtest-satdep 242s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 242s Need to get 0 B/704 B of archives. 242s After this operation, 0 B of additional disk space will be used. 242s Get:1 /tmp/autopkgtest.chTVR2/4-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 242s Selecting previously unselected package autopkgtest-satdep. 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61684 files and directories currently installed.) 242s Preparing to unpack .../4-autopkgtest-satdep.deb ... 242s Unpacking autopkgtest-satdep (0) ... 242s Setting up autopkgtest-satdep (0) ... 244s (Reading database ... 61684 files and directories currently installed.) 244s Removing autopkgtest-satdep (0) ... 244s autopkgtest [18:04:40]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 244s autopkgtest [18:04:40]: test command4: [----------------------- 244s Search pymol scripts in /usr/share/pymol/examples/cookbook... 244s Processing new directory /usr/share/pymol/examples/cookbook 244s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 245s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 246s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 246s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 248s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 279s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 281s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 281s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 283s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 284s autopkgtest [18:05:20]: test command4: -----------------------] 284s autopkgtest [18:05:20]: test command4: - - - - - - - - - - results - - - - - - - - - - 284s command4 PASS (superficial) 285s autopkgtest [18:05:21]: test command5: preparing testbed 286s Reading package lists... 286s Building dependency tree... 286s Reading state information... 286s Starting pkgProblemResolver with broken count: 0 286s Starting 2 pkgProblemResolver with broken count: 0 286s Done 286s The following NEW packages will be installed: 286s autopkgtest-satdep 286s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 286s Need to get 0 B/704 B of archives. 286s After this operation, 0 B of additional disk space will be used. 286s Get:1 /tmp/autopkgtest.chTVR2/5-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 287s Selecting previously unselected package autopkgtest-satdep. 287s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61684 files and directories currently installed.) 287s Preparing to unpack .../5-autopkgtest-satdep.deb ... 287s Unpacking autopkgtest-satdep (0) ... 287s Setting up autopkgtest-satdep (0) ... 288s (Reading database ... 61684 files and directories currently installed.) 288s Removing autopkgtest-satdep (0) ... 289s autopkgtest [18:05:25]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 289s autopkgtest [18:05:25]: test command5: [----------------------- 289s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 289s Copyright (c) Schrodinger, LLC. 289s All Rights Reserved. 289s 289s Created by Warren L. DeLano, Ph.D. 289s 289s PyMOL is user-supported open-source software. Although some versions 289s are freely available, PyMOL is not in the public domain. 289s 289s If PyMOL is helpful in your work or study, then please volunteer 289s support for our ongoing efforts to create open and affordable scientific 289s software by purchasing a PyMOL Maintenance and/or Support subscription. 289s 289s More information can be found at "http://www.pymol.org". 289s 289s Enter "help" for a list of commands. 289s Enter "help " for information on a specific command. 289s 289s Hit ESC anytime to toggle between text and graphics. 289s 289s Setting: wizard_prompt_mode set to 3. 289s Detected 2 CPU cores. Enabled multithreaded rendering. 289s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 289s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 289s PyMOL>wizard annotation 289s PyMOL>set wizard_prompt_mode,3 289s PyMOL>load_annotated_sdf demo.sdf 289s HBA ['[1, 25, 26, 34]\n'] 289s HBD ['[20]\n'] 289s ACD_NUMBER ['MFCD02681585\n'] 289s SCORE ['-222.044\n'] 289s MOLID ['MFCD02681585\n'] 289s HBA ['[1, 21]\n'] 289s HBD ['[]\n'] 289s ACD_NUMBER ['MFCD01567969\n'] 289s SCORE ['-219.984\n'] 289s MOLID ['MFCD01567969\n'] 289s HBA ['[1, 24]\n'] 289s HBD ['[10, 22]\n'] 289s ACD_NUMBER ['MFCD00023789\n'] 289s SCORE ['-219.911\n'] 289s MOLID ['MFCD00023789\n'] 289s HBA ['[1, 11]\n'] 289s HBD ['[3]\n'] 289s ACD_NUMBER ['MFCD02579443\n'] 289s SCORE ['-219.769\n'] 289s MOLID ['MFCD02579443\n'] 289s HBA ['[1, 11]\n'] 289s HBD ['[9]\n'] 289s ACD_NUMBER ['MFCD02579410\n'] 289s SCORE ['-214.809\n'] 289s MOLID ['MFCD02579410\n'] 289s HBA ['[1, 20, 22, 27, 32]\n'] 289s HBD ['[10, 20]\n'] 289s ACD_NUMBER ['MFCD02579135\n'] 289s SCORE ['-213.630\n'] 289s MOLID ['MFCD02579135\n'] 289s HBA ['[1, 11, 14, 21]\n'] 289s HBD ['[]\n'] 289s ACD_NUMBER ['MFCD02681468\n'] 289s SCORE ['-213.462\n'] 289s MOLID ['MFCD02681468\n'] 289s HBA ['[1, 13, 14, 29]\n'] 289s HBD ['[]\n'] 289s ACD_NUMBER ['MFCD00141070\n'] 289s SCORE ['-213.240\n'] 289s MOLID ['MFCD00141070\n'] 289s HBA ['[1, 8]\n'] 289s HBD ['[]\n'] 289s ACD_NUMBER ['MFCD02983625\n'] 289s SCORE ['-211.422\n'] 289s MOLID ['MFCD02983625\n'] 289s HBA ['[1, 11]\n'] 289s HBD ['[3, 12]\n'] 289s ACD_NUMBER ['MFCD00115818\n'] 289s SCORE ['-210.482\n'] 289s MOLID ['MFCD00115818\n'] 289s autopkgtest [18:05:25]: test command5: -----------------------] 290s command5 PASS (superficial) 290s autopkgtest [18:05:26]: test command5: - - - - - - - - - - results - - - - - - - - - - 290s autopkgtest [18:05:26]: @@@@@@@@@@@@@@@@@@@@ summary 290s command1 PASS (superficial) 290s command2 PASS (superficial) 290s command3 PASS (superficial) 290s command4 PASS (superficial) 290s command5 PASS (superficial) 302s virt: nova [W] Using flock in prodstack6-s390x 302s virt: Creating nova instance adt-plucky-s390x-pymol-20241113-180036-juju-7f2275-prod-proposed-migration-environment-2-64bc6790-b8b5-4d7e-9566-54ac78e57bdd from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...