0s autopkgtest [12:32:22]: starting date and time: 2024-11-13 12:32:22+0000
  0s autopkgtest [12:32:22]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [12:32:22]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.igsguzfk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pykdtree --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-32.secgroup --name adt-plucky-s390x-pykdtree-20241113-123222-juju-7f2275-prod-proposed-migration-environment-15-aef980c2-79d2-476d-814d-c27381b0addb --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
102s autopkgtest [12:34:04]: testbed dpkg architecture: s390x
102s autopkgtest [12:34:04]: testbed apt version: 2.9.8
102s autopkgtest [12:34:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup
103s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
103s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
103s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB]
104s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB]
104s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB]
104s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [107 kB]
104s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [641 kB]
104s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB]
104s Fetched 1934 kB in 1s (2352 kB/s)
104s Reading package lists...
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s Calculating upgrade...
106s The following NEW packages will be installed:
106s   python3.13-gdbm
106s The following packages will be upgraded:
106s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
106s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
106s Need to get 252 kB of archives.
106s After this operation, 98.3 kB of additional disk space will be used.
106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB]
106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB]
106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB]
106s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB]
106s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B]
106s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB]
107s Fetched 252 kB in 0s (630 kB/s)
107s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
107s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ...
107s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
107s Setting up python3-minimal (3.12.7-1) ...
107s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55510 files and directories currently installed.)
107s Preparing to unpack .../python3_3.12.7-1_s390x.deb ...
107s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
107s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ...
107s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ...
107s Selecting previously unselected package python3.13-gdbm.
107s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ...
107s Unpacking python3.13-gdbm (3.13.0-2) ...
107s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ...
107s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ...
107s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ...
107s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
107s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ...
107s Setting up python3.13-gdbm (3.13.0-2) ...
107s Setting up libpython3-stdlib:s390x (3.12.7-1) ...
107s Setting up python3 (3.12.7-1) ...
107s Setting up python3-gdbm:s390x (3.12.7-1) ...
107s Processing triggers for man-db (2.12.1-3) ...
108s Processing triggers for libc-bin (2.40-1ubuntu3) ...
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
109s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
109s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
109s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
109s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
110s Reading package lists...
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s Calculating upgrade...
110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
113s autopkgtest [12:34:15]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
113s autopkgtest [12:34:15]: @@@@@@@@@@@@@@@@@@@@ apt-source pykdtree
114s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (dsc) [2239 B]
114s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (tar) [20.5 kB]
114s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (diff) [4548 B]
114s gpgv: Signature made Sat Sep  7 16:03:46 2024 UTC
114s gpgv:                using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812
114s gpgv:                issuer "antonio.valentino@tiscali.it"
114s gpgv: Can't check signature: No public key
114s dpkg-source: warning: cannot verify inline signature for ./pykdtree_1.3.13+ds-1.dsc: no acceptable signature found
114s autopkgtest [12:34:16]: testing package pykdtree version 1.3.13+ds-1
115s autopkgtest [12:34:17]: build not needed
115s autopkgtest [12:34:17]: test pybuild-autopkgtest: preparing testbed
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
116s Starting pkgProblemResolver with broken count: 0
116s Starting 2 pkgProblemResolver with broken count: 0
116s Done
116s The following additional packages will be installed:
116s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
116s   cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu cython3 debhelper debugedit
116s   dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
116s   g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu
116s   gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8
116s   libblas3 libcc1-0 libdebhelper-perl libexpat1-dev
116s   libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1
116s   libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
116s   libmpc3 libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13
116s   libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib
116s   libstdc++-14-dev libtool libubsan1 m4 po-debconf pybuild-plugin-autopkgtest
116s   pybuild-plugin-pyproject python3-all python3-all-dev python3-build
116s   python3-dev python3-iniconfig python3-installer python3-mako python3-numpy
116s   python3-packaging python3-pluggy python3-pykdtree python3-pyproject-hooks
116s   python3-pytest python3-toml python3-wheel python3.12-dev python3.13
116s   python3.13-dev python3.13-minimal zlib1g-dev
116s Suggested packages:
116s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
116s   cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
116s   bison gdb gcc-doc gdb-s390x-linux-gnu gettext-doc libasprintf-dev
116s   libgettextpo-dev libstdc++-14-doc libtool-doc gfortran | fortran95-compiler
116s   gcj-jdk m4-doc libmail-box-perl python3-pip python3-venv python-build-doc
116s   python-installer-doc python-mako-doc python3-beaker gfortran
116s   python-numpy-doc python3.13-venv python3.13-doc binfmt-support
116s Recommended packages:
116s   libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl
117s The following NEW packages will be installed:
117s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
117s   cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu cython3 debhelper
117s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
117s   g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu
117s   gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8
117s   libblas3 libcc1-0 libdebhelper-perl libexpat1-dev
117s   libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1
117s   libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
117s   libmpc3 libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13
117s   libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib
117s   libstdc++-14-dev libtool libubsan1 m4 po-debconf pybuild-plugin-autopkgtest
117s   pybuild-plugin-pyproject python3-all python3-all-dev python3-build
117s   python3-dev python3-iniconfig python3-installer python3-mako python3-numpy
117s   python3-packaging python3-pluggy python3-pykdtree python3-pyproject-hooks
117s   python3-pytest python3-toml python3-wheel python3.12-dev python3.13
117s   python3.13-dev python3.13-minimal zlib1g-dev
117s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
117s Need to get 86.8 MB/86.8 MB of archives.
117s After this operation, 305 MB of additional disk space will be used.
117s Get:1 /tmp/autopkgtest.BG267A/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [832 B]
117s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB]
117s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB]
117s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x m4 s390x 1.4.19-4build1 [256 kB]
117s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x autoconf all 2.72-3 [382 kB]
117s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x autotools-dev all 20220109.1 [44.9 kB]
117s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB]
117s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x autopoint all 0.22.5-2 [616 kB]
117s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
117s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
117s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [9570 kB]
118s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-8ubuntu1 [1026 B]
118s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B]
118s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB]
118s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-8ubuntu1 [50.6 kB]
118s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB]
118s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-8ubuntu1 [30.9 kB]
118s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-8ubuntu1 [2963 kB]
118s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-8ubuntu1 [1184 kB]
118s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-8ubuntu1 [1037 kB]
118s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [18.7 MB]
118s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-8ubuntu1 [518 kB]
118s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B]
118s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B]
118s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-8ubuntu1 [2608 kB]
118s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [11.0 MB]
119s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-8ubuntu1 [19.9 kB]
119s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B]
119s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B]
119s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
119s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x cython3 s390x 3.0.11+dfsg-1ubuntu1 [2524 kB]
119s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
119s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtool all 2.4.7-7build1 [166 kB]
119s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x dh-autoreconf all 20 [16.1 kB]
119s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB]
119s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
119s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x dh-strip-nondeterminism all 1.14.0-1 [5058 B]
119s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x debugedit s390x 1:5.1-1 [49.9 kB]
119s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x dwz s390x 0.15-1build6 [122 kB]
119s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x gettext s390x 0.22.5-2 [996 kB]
119s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB]
119s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x po-debconf all 1.0.21+nmu1 [233 kB]
119s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x debhelper all 13.20ubuntu1 [893 kB]
119s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x dh-python all 6.20241024 [112 kB]
119s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
119s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libexpat1-dev s390x 2.6.2-2 [146 kB]
119s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB]
119s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
119s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
119s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB]
119s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
119s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
119s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.12-dev s390x 3.12.7-3 [5838 kB]
119s Get:54 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-dev s390x 3.12.7-1 [10.3 kB]
119s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB]
119s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13 s390x 3.13.0-2 [2477 kB]
120s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-dev s390x 3.13.0-2 [5586 kB]
120s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-all-dev s390x 3.12.7-1 [918 B]
120s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
120s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB]
120s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
120s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-toml all 0.10.2-1 [16.5 kB]
120s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-wheel all 0.44.0-1 [54.2 kB]
120s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-build all 1.2.2-1 [31.0 kB]
120s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
120s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-pyproject all 6.20241024 [1728 B]
120s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB]
120s Get:68 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B]
120s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x python3.12-dev s390x 3.12.7-3 [505 kB]
120s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-dev s390x 3.12.7-1 [26.7 kB]
120s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-dev s390x 3.13.0-2 [507 kB]
120s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all-dev s390x 3.12.7-1 [914 B]
120s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B]
120s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x python3-mako all 1.3.6-1 [63.5 kB]
120s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
120s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB]
120s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pykdtree s390x 1.3.13+ds-1 [72.7 kB]
120s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB]
120s Fetched 86.8 MB in 3s (25.3 MB/s)
120s Selecting previously unselected package libpython3.13-minimal:s390x.
120s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
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120s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ...
120s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ...
120s Selecting previously unselected package python3.13-minimal.
120s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ...
120s Unpacking python3.13-minimal (3.13.0-2) ...
120s Selecting previously unselected package m4.
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120s Selecting previously unselected package autoconf.
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120s Selecting previously unselected package autopoint.
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121s Selecting previously unselected package libisl23:s390x.
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121s Selecting previously unselected package libmpc3:s390x.
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121s Selecting previously unselected package cpp-14-s390x-linux-gnu.
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121s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
121s Selecting previously unselected package cpp-s390x-linux-gnu.
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121s Unpacking cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
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121s Selecting previously unselected package libcc1-0:s390x.
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121s Selecting previously unselected package libgomp1:s390x.
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121s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ...
121s Selecting previously unselected package libitm1:s390x.
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121s Selecting previously unselected package libasan8:s390x.
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121s Selecting previously unselected package libubsan1:s390x.
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121s Selecting previously unselected package libgcc-14-dev:s390x.
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121s Selecting previously unselected package gcc-14.
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121s Selecting previously unselected package gcc-s390x-linux-gnu.
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121s Selecting previously unselected package gcc.
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121s Unpacking gcc (4:14.1.0-2ubuntu1) ...
121s Selecting previously unselected package libstdc++-14-dev:s390x.
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121s Selecting previously unselected package g++-14-s390x-linux-gnu.
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121s Selecting previously unselected package g++-14.
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121s Selecting previously unselected package g++-s390x-linux-gnu.
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121s Selecting previously unselected package build-essential.
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121s Selecting previously unselected package cython3.
121s Preparing to unpack .../29-cython3_3.0.11+dfsg-1ubuntu1_s390x.deb ...
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122s Selecting previously unselected package libdebhelper-perl.
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122s Selecting previously unselected package libtool.
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122s Selecting previously unselected package dh-autoreconf.
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122s Selecting previously unselected package libarchive-zip-perl.
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122s Selecting previously unselected package libfile-stripnondeterminism-perl.
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122s Selecting previously unselected package dh-strip-nondeterminism.
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122s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
122s Selecting previously unselected package debugedit.
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122s Selecting previously unselected package libblas3:s390x.
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122s Selecting previously unselected package libexpat1-dev:s390x.
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122s Selecting previously unselected package libgfortran5:s390x.
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122s Selecting previously unselected package libjs-jquery.
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122s Selecting previously unselected package libjs-underscore.
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122s Selecting previously unselected package libjs-sphinxdoc.
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122s Selecting previously unselected package liblapack3:s390x.
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122s Selecting previously unselected package zlib1g-dev:s390x.
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122s Selecting previously unselected package libpython3.12-dev:s390x.
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122s Selecting previously unselected package libpython3.13-stdlib:s390x.
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122s Selecting previously unselected package libpython3-all-dev:s390x.
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122s Unpacking libpython3-all-dev:s390x (3.12.7-1) ...
122s Selecting previously unselected package pybuild-plugin-autopkgtest.
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122s Selecting previously unselected package python3-packaging.
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122s Selecting previously unselected package python3.13.
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122s Selecting previously unselected package python3.13-dev.
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123s Selecting previously unselected package python3-iniconfig.
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123s Selecting previously unselected package python3-mako.
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123s Selecting previously unselected package python3-pykdtree.
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123s Selecting previously unselected package autopkgtest-satdep.
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123s Unpacking autopkgtest-satdep (0) ...
123s Setting up dh-python (6.20241024) ...
123s Setting up python3-iniconfig (1.1.1-2) ...
123s Setting up libarchive-zip-perl (1.68-1) ...
123s Setting up libdebhelper-perl (13.20ubuntu1) ...
123s Setting up m4 (1.4.19-4build1) ...
123s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ...
123s Setting up python3-wheel (0.44.0-1) ...
123s Setting up libpython3.13-minimal:s390x (3.13.0-2) ...
123s Setting up autotools-dev (20220109.1) ...
123s Setting up libblas3:s390x (3.12.0-3build2) ...
123s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
123s Setting up python3-packaging (24.1-1) ...
123s Setting up libexpat1-dev:s390x (2.6.2-2) ...
123s Setting up python3-pyproject-hooks (1.2.0-1) ...
124s Setting up libmpc3:s390x (1.3.1-1build2) ...
124s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ...
125s Setting up autopoint (0.22.5-2) ...
125s Setting up python3-toml (0.10.2-1) ...
125s Setting up python3-installer (0.7.0+dfsg1-3) ...
125s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ...
125s Setting up autoconf (2.72-3) ...
125s Setting up python3-pluggy (1.5.0-1) ...
126s Setting up libubsan1:s390x (14.2.0-8ubuntu1) ...
126s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
126s Setting up dwz (0.15-1build6) ...
126s Setting up libasan8:s390x (14.2.0-8ubuntu1) ...
126s Setting up debugedit (1:5.1-1) ...
126s Setting up python3.13-minimal (3.13.0-2) ...
126s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
126s Setting up libisl23:s390x (0.27-1) ...
126s Setting up python3-build (1.2.2-1) ...
127s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ...
127s Setting up libcc1-0:s390x (14.2.0-8ubuntu1) ...
127s Setting up libitm1:s390x (14.2.0-8ubuntu1) ...
127s Setting up python3-mako (1.3.6-1) ...
127s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
127s Setting up libpython3.13:s390x (3.13.0-2) ...
127s Setting up automake (1:1.16.5-1.3ubuntu1) ...
127s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
127s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
127s Setting up liblapack3:s390x (3.12.0-3build2) ...
127s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
127s Setting up gettext (0.22.5-2) ...
127s Setting up python3.13 (3.13.0-2) ...
128s Setting up pybuild-plugin-pyproject (6.20241024) ...
128s Setting up python3-pytest (8.3.3-1) ...
128s Setting up python3-all (3.12.7-1) ...
128s Setting up libpython3.12-dev:s390x (3.12.7-3) ...
128s Setting up intltool-debian (0.35.0+20060710.6) ...
128s Setting up libpython3.13-dev:s390x (3.13.0-2) ...
128s Setting up python3.12-dev (3.12.7-3) ...
128s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
132s Setting up libjs-sphinxdoc (7.4.7-4) ...
132s Setting up cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ...
132s Setting up cpp-14 (14.2.0-8ubuntu1) ...
132s Setting up dh-strip-nondeterminism (1.14.0-1) ...
132s Setting up libgcc-14-dev:s390x (14.2.0-8ubuntu1) ...
132s Setting up libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ...
132s Setting up python3-pykdtree (1.3.13+ds-1) ...
132s Setting up libpython3-dev:s390x (3.12.7-1) ...
132s Setting up cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
132s Setting up python3.13-dev (3.13.0-2) ...
133s Setting up po-debconf (1.0.21+nmu1) ...
133s Setting up gcc-14-s390x-linux-gnu (14.2.0-8ubuntu1) ...
133s Setting up gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
133s Setting up libpython3-all-dev:s390x (3.12.7-1) ...
133s Setting up python3-dev (3.12.7-1) ...
133s Setting up g++-14-s390x-linux-gnu (14.2.0-8ubuntu1) ...
133s Setting up cpp (4:14.1.0-2ubuntu1) ...
133s Setting up python3-all-dev (3.12.7-1) ...
133s Setting up g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ...
133s Setting up gcc-14 (14.2.0-8ubuntu1) ...
133s Setting up g++-14 (14.2.0-8ubuntu1) ...
133s Setting up libtool (2.4.7-7build1) ...
133s Setting up gcc (4:14.1.0-2ubuntu1) ...
133s Setting up dh-autoreconf (20) ...
133s Setting up g++ (4:14.1.0-2ubuntu1) ...
133s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
133s Setting up build-essential (12.10ubuntu1) ...
133s Setting up debhelper (13.20ubuntu1) ...
133s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
133s Setting up autopkgtest-satdep (0) ...
133s Processing triggers for systemd (256.5-2ubuntu4) ...
133s Processing triggers for man-db (2.12.1-3) ...
133s Processing triggers for install-info (7.1.1-1) ...
133s Processing triggers for libc-bin (2.40-1ubuntu3) ...
136s (Reading database ... 60813 files and directories currently installed.)
136s Removing autopkgtest-satdep (0) ...
136s autopkgtest [12:34:38]: test pybuild-autopkgtest: pybuild-autopkgtest
136s autopkgtest [12:34:38]: test pybuild-autopkgtest: [-----------------------
136s pybuild-autopkgtest
137s I: pybuild base:311: cd /tmp/autopkgtest.BG267A/autopkgtest_tmp/build; python3.13 -m pytest --pyargs pykdtree
137s ============================= test session starts ==============================
137s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
137s rootdir: /tmp/autopkgtest.BG267A/autopkgtest_tmp/build
137s configfile: pyproject.toml
137s plugins: typeguard-4.4.1
137s collected 0 items / 1 error
137s 
137s ==================================== ERRORS ====================================
137s ________________________ ERROR collecting test_tree.py _________________________
137s ImportError while importing test module '/usr/lib/python3/dist-packages/pykdtree/test_tree.py'.
137s Hint: make sure your test modules/packages have valid Python names.
137s Traceback:
137s /usr/lib/python3/dist-packages/pykdtree/__init__.py:4: in <module>
137s     from . import kdtree
137s E   ImportError: cannot import name 'kdtree' from partially initialized module 'pykdtree' (most likely due to a circular import) (/usr/lib/python3/dist-packages/pykdtree/__init__.py)
137s 
137s The above exception was the direct cause of the following exception:
137s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
137s     return _bootstrap._gcd_import(name[level:], package, level)
137s /usr/lib/python3/dist-packages/pykdtree/__init__.py:6: in <module>
137s     raise ImportError(
137s E   ImportError: Pykdtree failed to import its C extension. This usually means it was built with OpenMP (C-level parallelization library) support but could not find it on your system. To enable better performance OpenMP must be installed (ex. ``brew install omp`` on Mac with HomeBrew). Otherwise, try installing Pykdtree from source (ex. ``pip install --no-binary pykdtree --force-install pykdtree``).
137s =========================== short test summary info ============================
137s ERROR test_tree.py
137s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
137s =============================== 1 error in 0.08s ===============================
137s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.BG267A/autopkgtest_tmp/build; python3.13 -m pytest --pyargs pykdtree
137s I: pybuild base:311: cd /tmp/autopkgtest.BG267A/autopkgtest_tmp/build; python3.12 -m pytest --pyargs pykdtree
137s ============================= test session starts ==============================
137s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
137s rootdir: /tmp/autopkgtest.BG267A/autopkgtest_tmp/build
137s configfile: pyproject.toml
137s plugins: typeguard-4.4.1
137s collected 17 items
137s 
137s test_tree.py .................                                           [100%]
137s 
137s ============================== 17 passed in 0.11s ==============================
137s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13
137s make: *** [/tmp/WkjTmS3Srh/run:4: pybuild-autopkgtest] Error 25
137s pybuild-autopkgtest: error: /tmp/WkjTmS3Srh/run pybuild-autopkgtest returned exit code 2
138s autopkgtest [12:34:40]: test pybuild-autopkgtest: -----------------------]
138s pybuild-autopkgtest  FAIL non-zero exit status 25
138s autopkgtest [12:34:40]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
138s autopkgtest [12:34:40]: @@@@@@@@@@@@@@@@@@@@ summary
138s pybuild-autopkgtest  FAIL non-zero exit status 25
150s nova [W] Using flock in prodstack6-s390x
150s flock: timeout while waiting to get lock
150s Creating nova instance adt-plucky-s390x-pykdtree-20241113-123222-juju-7f2275-prod-proposed-migration-environment-15-aef980c2-79d2-476d-814d-c27381b0addb from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...