0s autopkgtest [12:28:36]: starting date and time: 2024-11-13 12:28:36+0000 0s autopkgtest [12:28:36]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [12:28:36]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s2rt1h0l/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pyensembl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-30.secgroup --name adt-plucky-s390x-pyensembl-20241113-122836-juju-7f2275-prod-proposed-migration-environment-20-ac58a05c-16af-42af-bde1-9b65fd0051ad --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 100s autopkgtest [12:30:16]: testbed dpkg architecture: s390x 100s autopkgtest [12:30:16]: testbed apt version: 2.9.8 100s autopkgtest [12:30:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 101s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 101s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 101s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 101s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [107 kB] 101s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [641 kB] 101s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [17.4 kB] 101s Fetched 1934 kB in 1s (2353 kB/s) 101s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s Calculating upgrade... 104s The following NEW packages will be installed: 104s python3.13-gdbm 104s The following packages will be upgraded: 104s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 104s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 252 kB of archives. 104s After this operation, 98.3 kB of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 104s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 104s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 104s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 104s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 104s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 104s Fetched 252 kB in 0s (600 kB/s) 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 105s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 105s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 105s Setting up python3-minimal (3.12.7-1) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 105s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 105s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 105s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 105s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 105s Selecting previously unselected package python3.13-gdbm. 105s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 105s Unpacking python3.13-gdbm (3.13.0-2) ... 105s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 105s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 105s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 105s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 105s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 105s Setting up python3.13-gdbm (3.13.0-2) ... 105s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 105s Setting up python3 (3.12.7-1) ... 105s Setting up python3-gdbm:s390x (3.12.7-1) ... 105s Processing triggers for man-db (2.12.1-3) ... 105s Processing triggers for libc-bin (2.40-1ubuntu3) ... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 107s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Calculating upgrade... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s autopkgtest [12:30:26]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 111s autopkgtest [12:30:27]: @@@@@@@@@@@@@@@@@@@@ apt-source pyensembl 112s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pyensembl 2.3.13-1 (dsc) [2291 B] 112s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pyensembl 2.3.13-1 (tar) [60.7 kB] 112s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pyensembl 2.3.13-1 (diff) [5404 B] 112s gpgv: Signature made Sat May 11 16:47:07 2024 UTC 112s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 112s gpgv: issuer "tchet@debian.org" 112s gpgv: Can't check signature: No public key 112s dpkg-source: warning: cannot verify inline signature for ./pyensembl_2.3.13-1.dsc: no acceptable signature found 112s autopkgtest [12:30:28]: testing package pyensembl version 2.3.13-1 113s autopkgtest [12:30:29]: build not needed 113s autopkgtest [12:30:29]: test run-unit-test: preparing testbed 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Starting pkgProblemResolver with broken count: 0 115s Starting 2 pkgProblemResolver with broken count: 0 115s Done 115s The following additional packages will be installed: 115s libblas3 libgfortran5 libjs-jquery libjs-sphinxdoc libjs-underscore 115s liblapack3 libpython3.13-minimal libpython3.13-stdlib pyensembl pylint 115s python3-all python3-astroid python3-datacache python3-dateutil python3-dill 115s python3-gtfparse python3-iniconfig python3-isort python3-logilab-common 115s python3-mccabe python3-memoized-property python3-mypy-extensions 115s python3-numpy python3-packaging python3-pandas python3-pandas-lib 115s python3-platformdirs python3-pluggy python3-pytest python3-serializable 115s python3-simplejson python3-six python3-tomlkit python3-typechecks python3-tz 115s python3.13 python3.13-minimal 115s Suggested packages: 115s python3-objgraph gcc gfortran python-numpy-doc python3-dev python-pandas-doc 115s python3-statsmodels python3.13-venv python3.13-doc binfmt-support 115s Recommended packages: 115s javascript-common python3-tk python3-scipy python3-matplotlib 115s python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 115s python3-html5lib python3-lxml python3-tables 115s The following NEW packages will be installed: 115s autopkgtest-satdep libblas3 libgfortran5 libjs-jquery libjs-sphinxdoc 115s libjs-underscore liblapack3 libpython3.13-minimal libpython3.13-stdlib 115s pyensembl pylint python3-all python3-astroid python3-datacache 115s python3-dateutil python3-dill python3-gtfparse python3-iniconfig 115s python3-isort python3-logilab-common python3-mccabe 115s python3-memoized-property python3-mypy-extensions python3-numpy 115s python3-packaging python3-pandas python3-pandas-lib python3-platformdirs 115s python3-pluggy python3-pytest python3-serializable python3-simplejson 115s python3-six python3-tomlkit python3-typechecks python3-tz python3.13 115s python3.13-minimal 115s 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 24.0 MB/24.0 MB of archives. 115s After this operation, 112 MB of additional disk space will be used. 115s Get:1 /tmp/autopkgtest.NDzLch/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B] 115s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 116s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 116s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 116s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 116s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-sphinxdoc all 7.4.7-4 [158 kB] 116s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 116s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 116s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-astroid all 3.2.2-1 [174 kB] 116s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-isort all 5.13.2-2 [59.3 kB] 116s Get:13 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mypy-extensions all 1.0.0-1 [6148 B] 116s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-logilab-common all 2.0.0-1 [281 kB] 116s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-dill all 0.3.9-1 [84.5 kB] 116s Get:16 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-mccabe all 0.7.0-1 [8678 B] 116s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x python3-platformdirs all 4.3.6-1 [16.8 kB] 116s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-tomlkit all 0.13.2-1 [37.6 kB] 116s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x pylint all 3.2.7-1 [343 kB] 116s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x python3-six all 1.16.0-7 [13.1 kB] 116s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x python3-dateutil all 2.9.0-2 [80.3 kB] 116s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 116s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB] 116s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.3+dfsg-5 [4938 kB] 116s Get:25 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.3+dfsg-5 [3112 kB] 116s Get:26 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-typechecks all 0.1.0+ds-4 [4562 B] 116s Get:27 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-datacache all 1.4.1-2 [13.1 kB] 116s Get:28 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-gtfparse all 1.3.0+ds-1 [10.1 kB] 116s Get:29 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-memoized-property all 1.0.3-2 [5286 B] 116s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x python3-simplejson s390x 3.19.3-1 [55.3 kB] 116s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-serializable all 0.4.1+ds-1 [8392 B] 116s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x pyensembl all 2.3.13-1 [37.1 kB] 116s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 116s Get:34 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 116s Get:35 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 116s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x python3-packaging all 24.1-1 [41.4 kB] 116s Get:37 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 116s Get:38 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pytest all 8.3.3-1 [251 kB] 117s Fetched 24.0 MB in 1s (16.8 MB/s) 117s Selecting previously unselected package libpython3.13-minimal:s390x. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 117s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 117s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 117s Selecting previously unselected package python3.13-minimal. 117s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 117s Unpacking python3.13-minimal (3.13.0-2) ... 117s Selecting previously unselected package libblas3:s390x. 117s Preparing to unpack .../02-libblas3_3.12.0-3build2_s390x.deb ... 117s Unpacking libblas3:s390x (3.12.0-3build2) ... 117s Selecting previously unselected package libgfortran5:s390x. 117s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 117s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 117s Selecting previously unselected package libjs-jquery. 117s Preparing to unpack .../04-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 117s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 117s Selecting previously unselected package libjs-underscore. 117s Preparing to unpack .../05-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 117s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 117s Selecting previously unselected package libjs-sphinxdoc. 117s Preparing to unpack .../06-libjs-sphinxdoc_7.4.7-4_all.deb ... 117s Unpacking libjs-sphinxdoc (7.4.7-4) ... 117s Selecting previously unselected package liblapack3:s390x. 117s Preparing to unpack .../07-liblapack3_3.12.0-3build2_s390x.deb ... 117s Unpacking liblapack3:s390x (3.12.0-3build2) ... 117s Selecting previously unselected package libpython3.13-stdlib:s390x. 117s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 117s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 117s Selecting previously unselected package python3-astroid. 117s Preparing to unpack .../09-python3-astroid_3.2.2-1_all.deb ... 117s Unpacking python3-astroid (3.2.2-1) ... 117s Selecting previously unselected package python3-isort. 117s Preparing to unpack .../10-python3-isort_5.13.2-2_all.deb ... 117s Unpacking python3-isort (5.13.2-2) ... 117s Selecting previously unselected package python3-mypy-extensions. 117s Preparing to unpack .../11-python3-mypy-extensions_1.0.0-1_all.deb ... 117s Unpacking python3-mypy-extensions (1.0.0-1) ... 117s Selecting previously unselected package python3-logilab-common. 117s Preparing to unpack .../12-python3-logilab-common_2.0.0-1_all.deb ... 117s Unpacking python3-logilab-common (2.0.0-1) ... 117s Selecting previously unselected package python3-dill. 117s Preparing to unpack .../13-python3-dill_0.3.9-1_all.deb ... 117s Unpacking python3-dill (0.3.9-1) ... 117s Selecting previously unselected package python3-mccabe. 117s Preparing to unpack .../14-python3-mccabe_0.7.0-1_all.deb ... 117s Unpacking python3-mccabe (0.7.0-1) ... 117s Selecting previously unselected package python3-platformdirs. 117s Preparing to unpack .../15-python3-platformdirs_4.3.6-1_all.deb ... 117s Unpacking python3-platformdirs (4.3.6-1) ... 117s Selecting previously unselected package python3-tomlkit. 117s Preparing to unpack .../16-python3-tomlkit_0.13.2-1_all.deb ... 117s Unpacking python3-tomlkit (0.13.2-1) ... 117s Selecting previously unselected package pylint. 117s Preparing to unpack .../17-pylint_3.2.7-1_all.deb ... 117s Unpacking pylint (3.2.7-1) ... 117s Selecting previously unselected package python3-six. 117s Preparing to unpack .../18-python3-six_1.16.0-7_all.deb ... 117s Unpacking python3-six (1.16.0-7) ... 117s Selecting previously unselected package python3-dateutil. 117s Preparing to unpack .../19-python3-dateutil_2.9.0-2_all.deb ... 117s Unpacking python3-dateutil (2.9.0-2) ... 117s Selecting previously unselected package python3-numpy. 117s Preparing to unpack .../20-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 117s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 117s Selecting previously unselected package python3-tz. 117s Preparing to unpack .../21-python3-tz_2024.1-2_all.deb ... 117s Unpacking python3-tz (2024.1-2) ... 117s Selecting previously unselected package python3-pandas-lib:s390x. 117s Preparing to unpack .../22-python3-pandas-lib_2.2.3+dfsg-5_s390x.deb ... 117s Unpacking python3-pandas-lib:s390x (2.2.3+dfsg-5) ... 117s Selecting previously unselected package python3-pandas. 117s Preparing to unpack .../23-python3-pandas_2.2.3+dfsg-5_all.deb ... 117s Unpacking python3-pandas (2.2.3+dfsg-5) ... 117s Selecting previously unselected package python3-typechecks. 117s Preparing to unpack .../24-python3-typechecks_0.1.0+ds-4_all.deb ... 117s Unpacking python3-typechecks (0.1.0+ds-4) ... 117s Selecting previously unselected package python3-datacache. 117s Preparing to unpack .../25-python3-datacache_1.4.1-2_all.deb ... 117s Unpacking python3-datacache (1.4.1-2) ... 117s Selecting previously unselected package python3-gtfparse. 117s Preparing to unpack .../26-python3-gtfparse_1.3.0+ds-1_all.deb ... 117s Unpacking python3-gtfparse (1.3.0+ds-1) ... 117s Selecting previously unselected package python3-memoized-property. 117s Preparing to unpack .../27-python3-memoized-property_1.0.3-2_all.deb ... 117s Unpacking python3-memoized-property (1.0.3-2) ... 117s Selecting previously unselected package python3-simplejson. 117s Preparing to unpack .../28-python3-simplejson_3.19.3-1_s390x.deb ... 117s Unpacking python3-simplejson (3.19.3-1) ... 117s Selecting previously unselected package python3-serializable. 117s Preparing to unpack .../29-python3-serializable_0.4.1+ds-1_all.deb ... 117s Unpacking python3-serializable (0.4.1+ds-1) ... 117s Selecting previously unselected package pyensembl. 117s Preparing to unpack .../30-pyensembl_2.3.13-1_all.deb ... 117s Unpacking pyensembl (2.3.13-1) ... 117s Selecting previously unselected package python3.13. 117s Preparing to unpack .../31-python3.13_3.13.0-2_s390x.deb ... 117s Unpacking python3.13 (3.13.0-2) ... 117s Selecting previously unselected package python3-all. 117s Preparing to unpack .../32-python3-all_3.12.7-1_s390x.deb ... 117s Unpacking python3-all (3.12.7-1) ... 117s Selecting previously unselected package python3-iniconfig. 117s Preparing to unpack .../33-python3-iniconfig_1.1.1-2_all.deb ... 117s Unpacking python3-iniconfig (1.1.1-2) ... 117s Selecting previously unselected package python3-packaging. 117s Preparing to unpack .../34-python3-packaging_24.1-1_all.deb ... 117s Unpacking python3-packaging (24.1-1) ... 117s Selecting previously unselected package python3-pluggy. 117s Preparing to unpack .../35-python3-pluggy_1.5.0-1_all.deb ... 117s Unpacking python3-pluggy (1.5.0-1) ... 117s Selecting previously unselected package python3-pytest. 117s Preparing to unpack .../36-python3-pytest_8.3.3-1_all.deb ... 117s Unpacking python3-pytest (8.3.3-1) ... 118s Selecting previously unselected package autopkgtest-satdep. 118s Preparing to unpack .../37-1-autopkgtest-satdep.deb ... 118s Unpacking autopkgtest-satdep (0) ... 118s Setting up python3-iniconfig (1.1.1-2) ... 118s Setting up python3-typechecks (0.1.0+ds-4) ... 118s Setting up python3-memoized-property (1.0.3-2) ... 118s Setting up python3-mypy-extensions (1.0.0-1) ... 118s Setting up python3-platformdirs (4.3.6-1) ... 118s Setting up python3-tz (2024.1-2) ... 118s Setting up python3-six (1.16.0-7) ... 119s Setting up python3-simplejson (3.19.3-1) ... 119s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 119s Setting up libblas3:s390x (3.12.0-3build2) ... 119s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 119s Setting up python3-packaging (24.1-1) ... 119s Setting up python3-dill (0.3.9-1) ... 119s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 119s Setting up python3-isort (5.13.2-2) ... 119s Setting up python3-pluggy (1.5.0-1) ... 120s Setting up python3-astroid (3.2.2-1) ... 120s Setting up python3.13-minimal (3.13.0-2) ... 121s Setting up python3-dateutil (2.9.0-2) ... 121s Setting up python3-mccabe (0.7.0-1) ... 121s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 121s Setting up python3-tomlkit (0.13.2-1) ... 121s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 121s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 121s Setting up liblapack3:s390x (3.12.0-3build2) ... 121s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 122s Setting up python3.13 (3.13.0-2) ... 122s Setting up python3-pytest (8.3.3-1) ... 123s Setting up python3-all (3.12.7-1) ... 123s Setting up python3-serializable (0.4.1+ds-1) ... 123s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 127s Setting up libjs-sphinxdoc (7.4.7-4) ... 127s Setting up python3-logilab-common (2.0.0-1) ... 127s Setting up python3-pandas-lib:s390x (2.2.3+dfsg-5) ... 127s Setting up python3-pandas (2.2.3+dfsg-5) ... 139s Setting up pylint (3.2.7-1) ... 140s Setting up python3-datacache (1.4.1-2) ... 140s Setting up python3-gtfparse (1.3.0+ds-1) ... 140s Setting up pyensembl (2.3.13-1) ... 140s Setting up autopkgtest-satdep (0) ... 140s Processing triggers for systemd (256.5-2ubuntu4) ... 140s Processing triggers for man-db (2.12.1-3) ... 140s Processing triggers for libc-bin (2.40-1ubuntu3) ... 142s (Reading database ... 59955 files and directories currently installed.) 142s Removing autopkgtest-satdep (0) ... 143s autopkgtest [12:30:59]: test run-unit-test: [----------------------- 144s ============================= test session starts ============================== 144s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 144s rootdir: /tmp/autopkgtest.NDzLch/autopkgtest_tmp 144s plugins: typeguard-4.4.1 144s collected 0 items / 4 errors 144s 144s ==================================== ERRORS ==================================== 144s ___________ ERROR collecting tests/test_ensembl_object_properties.py ___________ 144s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/tests/test_ensembl_object_properties.py'. 144s Hint: make sure your test modules/packages have valid Python names. 144s Traceback: 144s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 144s return _bootstrap._gcd_import(name[level:], package, level) 144s tests/test_ensembl_object_properties.py:8: in 144s from .common import eq_ 144s tests/common.py:3: in 144s from pyensembl import genome_for_reference_name, cached_release 144s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 144s from .database import Database 144s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 144s import datacache 144s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 144s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 144s /usr/lib/python3/dist-packages/datacache/download.py:24: in 144s import pandas as pd 144s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 144s raise ImportError( 144s E ImportError: Unable to import required dependencies: 144s E numpy: Error importing numpy: you should not try to import numpy from 144s E its source directory; please exit the numpy source tree, and relaunch 144s E your python interpreter from there. 144s _____________________ ERROR collecting tests/test_locus.py _____________________ 144s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/tests/test_locus.py'. 144s Hint: make sure your test modules/packages have valid Python names. 144s Traceback: 144s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 144s return _bootstrap._gcd_import(name[level:], package, level) 144s tests/test_locus.py:1: in 144s from pyensembl.locus import Locus 144s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 144s from .database import Database 144s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 144s import datacache 144s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 144s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 144s /usr/lib/python3/dist-packages/datacache/download.py:24: in 144s import pandas as pd 144s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 144s raise ImportError( 144s E ImportError: Unable to import required dependencies: 144s E numpy: Error importing numpy: you should not try to import numpy from 144s E its source directory; please exit the numpy source tree, and relaunch 144s E your python interpreter from there. 144s _______________ ERROR collecting tests/test_release_versions.py ________________ 144s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/tests/test_release_versions.py'. 144s Hint: make sure your test modules/packages have valid Python names. 144s Traceback: 144s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 144s return _bootstrap._gcd_import(name[level:], package, level) 144s tests/test_release_versions.py:1: in 144s from pyensembl import EnsemblRelease, MAX_ENSEMBL_RELEASE 144s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 144s from .database import Database 144s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 144s import datacache 144s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 144s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 144s /usr/lib/python3/dist-packages/datacache/download.py:24: in 144s import pandas as pd 144s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 144s raise ImportError( 144s E ImportError: Unable to import required dependencies: 144s E numpy: Error importing numpy: you should not try to import numpy from 144s E its source directory; please exit the numpy source tree, and relaunch 144s E your python interpreter from there. 144s _____________________ ERROR collecting tests/test_shell.py _____________________ 144s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/tests/test_shell.py'. 144s Hint: make sure your test modules/packages have valid Python names. 144s Traceback: 144s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 144s return _bootstrap._gcd_import(name[level:], package, level) 144s tests/test_shell.py:1: in 144s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 144s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 144s from .database import Database 144s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 144s import datacache 144s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 144s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 144s /usr/lib/python3/dist-packages/datacache/download.py:24: in 144s import pandas as pd 144s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 144s raise ImportError( 144s E ImportError: Unable to import required dependencies: 144s E numpy: Error importing numpy: you should not try to import numpy from 144s E its source directory; please exit the numpy source tree, and relaunch 144s E your python interpreter from there. 144s =========================== short test summary info ============================ 144s ERROR tests/test_ensembl_object_properties.py 144s ERROR tests/test_locus.py 144s ERROR tests/test_release_versions.py 144s ERROR tests/test_shell.py 144s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!! 144s ============================== 4 errors in 0.69s =============================== 145s autopkgtest [12:31:00]: test run-unit-test: -----------------------] 145s autopkgtest [12:31:01]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 145s run-unit-test FAIL non-zero exit status 2 145s autopkgtest [12:31:01]: test pybuild-autopkgtest: preparing testbed 146s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 147s The following additional packages will be installed: 147s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 147s cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu debhelper debugedit dh-autoreconf 147s dh-python dh-strip-nondeterminism dwz g++ g++-14 g++-14-s390x-linux-gnu 147s g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu 147s gettext intltool-debian libarchive-zip-perl libasan8 libcc1-0 147s libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev libgomp1 147s libisl23 libitm1 libmpc3 libstdc++-14-dev libtool libubsan1 m4 po-debconf 147s pybuild-plugin-autopkgtest 147s Suggested packages: 147s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 147s cpp-14-doc dh-make flit python3-build python3-installer python3-wheel 147s gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 147s gdb-s390x-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 147s libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc 147s libmail-box-perl 147s Recommended packages: 147s libarchive-cpio-perl libltdl-dev libmail-sendmail-perl 147s The following NEW packages will be installed: 147s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 147s cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu debhelper debugedit 147s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 147s g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu 147s gcc-s390x-linux-gnu gettext intltool-debian libarchive-zip-perl libasan8 147s libcc1-0 libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev 147s libgomp1 libisl23 libitm1 libmpc3 libstdc++-14-dev libtool libubsan1 m4 147s po-debconf pybuild-plugin-autopkgtest 147s 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. 147s Need to get 53.4 MB/53.4 MB of archives. 147s After this operation, 168 MB of additional disk space will be used. 147s Get:1 /tmp/autopkgtest.NDzLch/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [836 B] 147s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x m4 s390x 1.4.19-4build1 [256 kB] 147s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x autoconf all 2.72-3 [382 kB] 148s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x autotools-dev all 20220109.1 [44.9 kB] 148s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 148s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x autopoint all 0.22.5-2 [616 kB] 148s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 148s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 148s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [9570 kB] 148s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-8ubuntu1 [1026 B] 148s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B] 148s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB] 148s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-8ubuntu1 [50.6 kB] 148s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-8ubuntu1 [151 kB] 148s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-8ubuntu1 [30.9 kB] 148s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-8ubuntu1 [2963 kB] 148s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-8ubuntu1 [1184 kB] 148s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-8ubuntu1 [1037 kB] 148s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [18.7 MB] 149s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-8ubuntu1 [518 kB] 149s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B] 149s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B] 149s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-8ubuntu1 [2608 kB] 149s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-8ubuntu1 [11.0 MB] 149s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-8ubuntu1 [19.9 kB] 149s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B] 149s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B] 149s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 149s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 149s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libtool all 2.4.7-7build1 [166 kB] 149s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x dh-autoreconf all 20 [16.1 kB] 149s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] 149s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 149s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x dh-strip-nondeterminism all 1.14.0-1 [5058 B] 149s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x debugedit s390x 1:5.1-1 [49.9 kB] 149s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x dwz s390x 0.15-1build6 [122 kB] 149s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gettext s390x 0.22.5-2 [996 kB] 149s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] 149s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x po-debconf all 1.0.21+nmu1 [233 kB] 149s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x debhelper all 13.20ubuntu1 [893 kB] 149s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x dh-python all 6.20241024 [112 kB] 149s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 149s Fetched 53.4 MB in 2s (25.7 MB/s) 149s Selecting previously unselected package m4. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59955 files and directories currently installed.) 149s Preparing to unpack .../00-m4_1.4.19-4build1_s390x.deb ... 149s Unpacking m4 (1.4.19-4build1) ... 149s Selecting previously unselected package autoconf. 149s Preparing to unpack .../01-autoconf_2.72-3_all.deb ... 149s Unpacking autoconf (2.72-3) ... 149s Selecting previously unselected package autotools-dev. 149s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ... 149s Unpacking autotools-dev (20220109.1) ... 149s Selecting previously unselected package automake. 149s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 149s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 149s Selecting previously unselected package autopoint. 149s Preparing to unpack .../04-autopoint_0.22.5-2_all.deb ... 149s Unpacking autopoint (0.22.5-2) ... 149s Selecting previously unselected package libisl23:s390x. 149s Preparing to unpack .../05-libisl23_0.27-1_s390x.deb ... 149s Unpacking libisl23:s390x (0.27-1) ... 149s Selecting previously unselected package libmpc3:s390x. 149s Preparing to unpack .../06-libmpc3_1.3.1-1build2_s390x.deb ... 149s Unpacking libmpc3:s390x (1.3.1-1build2) ... 149s Selecting previously unselected package cpp-14-s390x-linux-gnu. 149s Preparing to unpack .../07-cpp-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 149s Unpacking cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package cpp-14. 150s Preparing to unpack .../08-cpp-14_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package cpp-s390x-linux-gnu. 150s Preparing to unpack .../09-cpp-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 150s Unpacking cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 150s Selecting previously unselected package cpp. 150s Preparing to unpack .../10-cpp_4%3a14.1.0-2ubuntu1_s390x.deb ... 150s Unpacking cpp (4:14.1.0-2ubuntu1) ... 150s Selecting previously unselected package libcc1-0:s390x. 150s Preparing to unpack .../11-libcc1-0_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libcc1-0:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package libgomp1:s390x. 150s Preparing to unpack .../12-libgomp1_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libgomp1:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package libitm1:s390x. 150s Preparing to unpack .../13-libitm1_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libitm1:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package libasan8:s390x. 150s Preparing to unpack .../14-libasan8_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libasan8:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package libubsan1:s390x. 150s Preparing to unpack .../15-libubsan1_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libubsan1:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package libgcc-14-dev:s390x. 150s Preparing to unpack .../16-libgcc-14-dev_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libgcc-14-dev:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package gcc-14-s390x-linux-gnu. 150s Preparing to unpack .../17-gcc-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking gcc-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package gcc-14. 150s Preparing to unpack .../18-gcc-14_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package gcc-s390x-linux-gnu. 150s Preparing to unpack .../19-gcc-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 150s Unpacking gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 150s Selecting previously unselected package gcc. 150s Preparing to unpack .../20-gcc_4%3a14.1.0-2ubuntu1_s390x.deb ... 150s Unpacking gcc (4:14.1.0-2ubuntu1) ... 150s Selecting previously unselected package libstdc++-14-dev:s390x. 150s Preparing to unpack .../21-libstdc++-14-dev_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package g++-14-s390x-linux-gnu. 150s Preparing to unpack .../22-g++-14-s390x-linux-gnu_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking g++-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package g++-14. 150s Preparing to unpack .../23-g++-14_14.2.0-8ubuntu1_s390x.deb ... 150s Unpacking g++-14 (14.2.0-8ubuntu1) ... 150s Selecting previously unselected package g++-s390x-linux-gnu. 150s Preparing to unpack .../24-g++-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 150s Unpacking g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 150s Selecting previously unselected package g++. 150s Preparing to unpack .../25-g++_4%3a14.1.0-2ubuntu1_s390x.deb ... 150s Unpacking g++ (4:14.1.0-2ubuntu1) ... 150s Selecting previously unselected package build-essential. 150s Preparing to unpack .../26-build-essential_12.10ubuntu1_s390x.deb ... 150s Unpacking build-essential (12.10ubuntu1) ... 150s Selecting previously unselected package libdebhelper-perl. 150s Preparing to unpack .../27-libdebhelper-perl_13.20ubuntu1_all.deb ... 150s Unpacking libdebhelper-perl (13.20ubuntu1) ... 150s Selecting previously unselected package libtool. 150s Preparing to unpack .../28-libtool_2.4.7-7build1_all.deb ... 150s Unpacking libtool (2.4.7-7build1) ... 150s Selecting previously unselected package dh-autoreconf. 150s Preparing to unpack .../29-dh-autoreconf_20_all.deb ... 150s Unpacking dh-autoreconf (20) ... 150s Selecting previously unselected package libarchive-zip-perl. 150s Preparing to unpack .../30-libarchive-zip-perl_1.68-1_all.deb ... 150s Unpacking libarchive-zip-perl (1.68-1) ... 150s Selecting previously unselected package libfile-stripnondeterminism-perl. 150s Preparing to unpack .../31-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 150s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 150s Selecting previously unselected package dh-strip-nondeterminism. 150s Preparing to unpack .../32-dh-strip-nondeterminism_1.14.0-1_all.deb ... 150s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 150s Selecting previously unselected package debugedit. 150s Preparing to unpack .../33-debugedit_1%3a5.1-1_s390x.deb ... 150s Unpacking debugedit (1:5.1-1) ... 151s Selecting previously unselected package dwz. 151s Preparing to unpack .../34-dwz_0.15-1build6_s390x.deb ... 151s Unpacking dwz (0.15-1build6) ... 151s Selecting previously unselected package gettext. 151s Preparing to unpack .../35-gettext_0.22.5-2_s390x.deb ... 151s Unpacking gettext (0.22.5-2) ... 151s Selecting previously unselected package intltool-debian. 151s Preparing to unpack .../36-intltool-debian_0.35.0+20060710.6_all.deb ... 151s Unpacking intltool-debian (0.35.0+20060710.6) ... 151s Selecting previously unselected package po-debconf. 151s Preparing to unpack .../37-po-debconf_1.0.21+nmu1_all.deb ... 151s Unpacking po-debconf (1.0.21+nmu1) ... 151s Selecting previously unselected package debhelper. 151s Preparing to unpack .../38-debhelper_13.20ubuntu1_all.deb ... 151s Unpacking debhelper (13.20ubuntu1) ... 151s Selecting previously unselected package dh-python. 151s Preparing to unpack .../39-dh-python_6.20241024_all.deb ... 151s Unpacking dh-python (6.20241024) ... 151s Selecting previously unselected package pybuild-plugin-autopkgtest. 151s Preparing to unpack .../40-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 151s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 151s Selecting previously unselected package autopkgtest-satdep. 151s Preparing to unpack .../41-2-autopkgtest-satdep.deb ... 151s Unpacking autopkgtest-satdep (0) ... 151s Setting up dh-python (6.20241024) ... 151s Setting up libarchive-zip-perl (1.68-1) ... 151s Setting up libdebhelper-perl (13.20ubuntu1) ... 151s Setting up m4 (1.4.19-4build1) ... 151s Setting up libgomp1:s390x (14.2.0-8ubuntu1) ... 151s Setting up autotools-dev (20220109.1) ... 151s Setting up libmpc3:s390x (1.3.1-1build2) ... 151s Setting up autopoint (0.22.5-2) ... 151s Setting up autoconf (2.72-3) ... 151s Setting up libubsan1:s390x (14.2.0-8ubuntu1) ... 151s Setting up dwz (0.15-1build6) ... 151s Setting up libasan8:s390x (14.2.0-8ubuntu1) ... 151s Setting up debugedit (1:5.1-1) ... 151s Setting up libisl23:s390x (0.27-1) ... 151s Setting up libcc1-0:s390x (14.2.0-8ubuntu1) ... 151s Setting up libitm1:s390x (14.2.0-8ubuntu1) ... 151s Setting up automake (1:1.16.5-1.3ubuntu1) ... 151s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 151s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 151s Setting up gettext (0.22.5-2) ... 151s Setting up intltool-debian (0.35.0+20060710.6) ... 151s Setting up cpp-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 151s Setting up cpp-14 (14.2.0-8ubuntu1) ... 151s Setting up dh-strip-nondeterminism (1.14.0-1) ... 151s Setting up libgcc-14-dev:s390x (14.2.0-8ubuntu1) ... 151s Setting up libstdc++-14-dev:s390x (14.2.0-8ubuntu1) ... 151s Setting up cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 151s Setting up po-debconf (1.0.21+nmu1) ... 151s Setting up gcc-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 151s Setting up gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 151s Setting up g++-14-s390x-linux-gnu (14.2.0-8ubuntu1) ... 151s Setting up cpp (4:14.1.0-2ubuntu1) ... 151s Setting up g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 151s Setting up gcc-14 (14.2.0-8ubuntu1) ... 151s Setting up g++-14 (14.2.0-8ubuntu1) ... 151s Setting up libtool (2.4.7-7build1) ... 151s Setting up gcc (4:14.1.0-2ubuntu1) ... 151s Setting up dh-autoreconf (20) ... 151s Setting up g++ (4:14.1.0-2ubuntu1) ... 151s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 151s Setting up build-essential (12.10ubuntu1) ... 151s Setting up debhelper (13.20ubuntu1) ... 151s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 151s Setting up autopkgtest-satdep (0) ... 151s Processing triggers for man-db (2.12.1-3) ... 151s Processing triggers for install-info (7.1.1-1) ... 152s Processing triggers for libc-bin (2.40-1ubuntu3) ... 153s (Reading database ... 62219 files and directories currently installed.) 153s Removing autopkgtest-satdep (0) ... 154s autopkgtest [12:31:10]: test pybuild-autopkgtest: pybuild-autopkgtest 154s autopkgtest [12:31:10]: test pybuild-autopkgtest: [----------------------- 154s pybuild-autopkgtest 154s I: pybuild base:311: cd /tmp/autopkgtest.NDzLch/autopkgtest_tmp/build; python3.13 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 155s ============================= test session starts ============================== 155s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 155s cachedir: .pytest_cache 155s rootdir: /tmp/autopkgtest.NDzLch/autopkgtest_tmp/build 155s plugins: typeguard-4.4.1 156s collecting ... collected 0 items / 25 errors 156s 156s ==================================== ERRORS ==================================== 156s ____________________ ERROR collecting tests/test_contigs.py ____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_contigs.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_contigs.py:1: in 156s from pyensembl import genome_for_reference_name 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ________________ ERROR collecting tests/test_download_cache.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_download_cache.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_download_cache.py:5: in 156s from pyensembl.download_cache import DownloadCache, MissingLocalFile, MissingRemoteFile 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s __________________ ERROR collecting tests/test_ensembl_gtf.py __________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_ensembl_gtf.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_ensembl_gtf.py:5: in 156s from .common import run_multiple_genomes 156s tests/common.py:3: in 156s from pyensembl import genome_for_reference_name, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________ ERROR collecting tests/test_ensembl_object_properties.py ___________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_ensembl_object_properties.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_ensembl_object_properties.py:8: in 156s from .common import eq_ 156s tests/common.py:3: in 156s from pyensembl import genome_for_reference_name, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ____________________ ERROR collecting tests/test_exon_id.py ____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_exon_id.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_exon_id.py:7: in 156s from pyensembl import cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s __________________ ERROR collecting tests/test_exon_object.py __________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_exon_object.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_exon_object.py:8: in 156s from pyensembl import cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________________ ERROR collecting tests/test_gene_ids.py ____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_gene_ids.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_gene_ids.py:10: in 156s from pyensembl import ensembl_grch38, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s __________________ ERROR collecting tests/test_gene_names.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_gene_names.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_gene_names.py:6: in 156s from pyensembl import genome_for_reference_name 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _________________ ERROR collecting tests/test_gene_objects.py __________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_gene_objects.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_gene_objects.py:1: in 156s from .common import eq_ 156s tests/common.py:3: in 156s from pyensembl import genome_for_reference_name, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________________ ERROR collecting tests/test_id_length.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_id_length.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_id_length.py:1: in 156s from .common import major_releases 156s tests/common.py:3: in 156s from pyensembl import genome_for_reference_name, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _____________________ ERROR collecting tests/test_locus.py _____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_locus.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_locus.py:1: in 156s from pyensembl.locus import Locus 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ____________ ERROR collecting tests/test_missing_genome_sources.py _____________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_missing_genome_sources.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_missing_genome_sources.py:1: in 156s from pyensembl import Genome 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _____________________ ERROR collecting tests/test_mouse.py _____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_mouse.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_mouse.py:1: in 156s from .common import eq_ 156s tests/common.py:3: in 156s from pyensembl import genome_for_reference_name, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _______________ ERROR collecting tests/test_release_versions.py ________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_release_versions.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_release_versions.py:1: in 156s from pyensembl import EnsemblRelease, MAX_ENSEMBL_RELEASE 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ____________________ ERROR collecting tests/test_search.py _____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_search.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_search.py:1: in 156s from pyensembl import find_nearest_locus 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _________________ ERROR collecting tests/test_sequence_data.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_sequence_data.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_sequence_data.py:8: in 156s from pyensembl import SequenceData 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _________________ ERROR collecting tests/test_serialization.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_serialization.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_serialization.py:15: in 156s from pyensembl import Genome, Transcript, Gene, Exon 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _____________________ ERROR collecting tests/test_shell.py _____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_shell.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_shell.py:1: in 156s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _____________ ERROR collecting tests/test_string_representation.py _____________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_string_representation.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_string_representation.py:1: in 156s from pyensembl import Locus, Gene, ensembl_grch37, Transcript, Exon 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ____________________ ERROR collecting tests/test_timings.py ____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_timings.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_timings.py:1: in 156s from pyensembl import genome_for_reference_name 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ________________ ERROR collecting tests/test_transcript_ids.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_transcript_ids.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_transcript_ids.py:7: in 156s from pyensembl import genome_for_reference_name 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ______________ ERROR collecting tests/test_transcript_objects.py _______________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_transcript_objects.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_transcript_objects.py:1: in 156s from pyensembl import Locus, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _____________ ERROR collecting tests/test_transcript_sequences.py ______________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_transcript_sequences.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_transcript_sequences.py:7: in 156s from .common import eq_ 156s tests/common.py:3: in 156s from pyensembl import genome_for_reference_name, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________ ERROR collecting tests/test_transcript_support_level.py ____________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_transcript_support_level.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_transcript_support_level.py:7: in 156s from .common import eq_ 156s tests/common.py:3: in 156s from pyensembl import genome_for_reference_name, cached_release 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________________ ERROR collecting tests/test_ucsc_gtf.py ____________________ 156s ImportError while importing test module '/tmp/autopkgtest.NDzLch/autopkgtest_tmp/build/tests/test_ucsc_gtf.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_ucsc_gtf.py:1: in 156s from pyensembl import Genome, Database 156s /usr/lib/python3/dist-packages/pyensembl/__init__.py:13: in 156s from .database import Database 156s /usr/lib/python3/dist-packages/pyensembl/database.py:17: in 156s import datacache 156s /usr/lib/python3/dist-packages/datacache/__init__.py:13: in 156s from .download import fetch_file, fetch_and_transform, fetch_csv_dataframe 156s /usr/lib/python3/dist-packages/datacache/download.py:24: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s =========================== short test summary info ============================ 156s ERROR tests/test_contigs.py 156s ERROR tests/test_download_cache.py 156s ERROR tests/test_ensembl_gtf.py 156s ERROR tests/test_ensembl_object_properties.py 156s ERROR tests/test_exon_id.py 156s ERROR tests/test_exon_object.py 156s ERROR tests/test_gene_ids.py 156s ERROR tests/test_gene_names.py 156s ERROR tests/test_gene_objects.py 156s ERROR tests/test_id_length.py 156s ERROR tests/test_locus.py 156s ERROR tests/test_missing_genome_sources.py 156s ERROR tests/test_mouse.py 156s ERROR tests/test_release_versions.py 156s ERROR tests/test_search.py 156s ERROR tests/test_sequence_data.py 156s ERROR tests/test_serialization.py 156s ERROR tests/test_shell.py 156s ERROR tests/test_string_representation.py 156s ERROR tests/test_timings.py 156s ERROR tests/test_transcript_ids.py 156s ERROR tests/test_transcript_objects.py 156s ERROR tests/test_transcript_sequences.py 156s ERROR tests/test_transcript_support_level.py 156s ERROR tests/test_ucsc_gtf.py 156s !!!!!!!!!!!!!!!!!!! Interrupted: 25 errors during collection !!!!!!!!!!!!!!!!!!! 156s ============================== 25 errors in 1.02s ============================== 156s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.NDzLch/autopkgtest_tmp/build; python3.13 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 156s I: pybuild base:311: cd /tmp/autopkgtest.NDzLch/autopkgtest_tmp/build; python3.12 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 156s ============================= test session starts ============================== 156s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 156s cachedir: .pytest_cache 156s rootdir: /tmp/autopkgtest.NDzLch/autopkgtest_tmp/build 156s plugins: typeguard-4.4.1 156s collecting ... collected 126 items / 98 deselected / 28 selected 156s 156s tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] 156s tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] 156s tests/test_locus.py::test_locus_overlaps PASSED [ 10%] 156s tests/test_locus.py::test_locus_contains PASSED [ 14%] 156s tests/test_locus.py::test_position_offset PASSED [ 17%] 156s tests/test_locus.py::test_range_offset PASSED [ 21%] 156s tests/test_locus.py::test_locus_distance PASSED [ 25%] 156s tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] 156s tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] 156s tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] 156s tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] 156s tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] 156s tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] 156s tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] 156s tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] 156s tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] 156s tests/test_release_versions.py::test_version_is_none PASSED [ 60%] 156s tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] 156s tests/test_release_versions.py::test_int_version PASSED [ 67%] 156s tests/test_release_versions.py::test_str_version PASSED [ 71%] 156s tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] 156s tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] 156s tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] 156s tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] 156s tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] 156s tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] 156s tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] 157s tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] 157s 157s =============================== warnings summary =============================== 157s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 157s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 157s import pkg_resources 157s 157s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3154 157s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3154: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 157s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 157s declare_namespace(pkg) 157s 157s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:74 157s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. 157s release_group = root_group.add_argument_group() 157s 157s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:96 157s /usr/lib/python3/dist-packages/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. 157s path_group = root_group.add_argument_group() 157s 157s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 157s ================ 28 passed, 98 deselected, 4 warnings in 0.67s ================= 157s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 157s make: *** [/tmp/tuBfSKEqFO/run:4: pybuild-autopkgtest] Error 25 157s pybuild-autopkgtest: error: /tmp/tuBfSKEqFO/run pybuild-autopkgtest returned exit code 2 157s autopkgtest [12:31:13]: test pybuild-autopkgtest: -----------------------] 157s autopkgtest [12:31:13]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 157s pybuild-autopkgtest FAIL non-zero exit status 25 158s autopkgtest [12:31:14]: @@@@@@@@@@@@@@@@@@@@ summary 158s run-unit-test FAIL non-zero exit status 2 158s pybuild-autopkgtest FAIL non-zero exit status 25 162s nova [W] Using flock in prodstack6-s390x 162s Creating nova instance adt-plucky-s390x-pyensembl-20241113-122836-juju-7f2275-prod-proposed-migration-environment-20-ac58a05c-16af-42af-bde1-9b65fd0051ad from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...