0s autopkgtest [12:12:25]: starting date and time: 2024-11-13 12:12:25+0000 0s autopkgtest [12:12:25]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [12:12:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4lu2ltu8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pybigwig --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-8.secgroup --name adt-plucky-s390x-pybigwig-20241113-121224-juju-7f2275-prod-proposed-migration-environment-2-2a83c6cc-55d2-4179-ab2f-5c248c1fb7da --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 111s autopkgtest [12:14:16]: testbed dpkg architecture: s390x 111s autopkgtest [12:14:16]: testbed apt version: 2.9.8 111s autopkgtest [12:14:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 112s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 112s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 112s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 113s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 113s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 113s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [85.8 kB] 113s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [565 kB] 113s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 113s Fetched 1689 kB in 1s (1950 kB/s) 113s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s The following NEW packages will be installed: 115s python3.13-gdbm 115s The following packages will be upgraded: 115s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 115s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 252 kB of archives. 115s After this operation, 98.3 kB of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-minimal s390x 3.12.7-1 [27.4 kB] 116s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3 s390x 3.12.7-1 [24.0 kB] 116s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libpython3-stdlib s390x 3.12.7-1 [10.0 kB] 116s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-gdbm s390x 3.13.0-2 [31.0 kB] 116s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-gdbm s390x 3.12.7-1 [8642 B] 116s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgpgme11t64 s390x 1.23.2-5ubuntu4 [151 kB] 116s Fetched 252 kB in 0s (618 kB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 116s Preparing to unpack .../python3-minimal_3.12.7-1_s390x.deb ... 116s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 116s Setting up python3-minimal (3.12.7-1) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55510 files and directories currently installed.) 116s Preparing to unpack .../python3_3.12.7-1_s390x.deb ... 116s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 116s Preparing to unpack .../libpython3-stdlib_3.12.7-1_s390x.deb ... 116s Unpacking libpython3-stdlib:s390x (3.12.7-1) over (3.12.6-0ubuntu1) ... 116s Selecting previously unselected package python3.13-gdbm. 116s Preparing to unpack .../python3.13-gdbm_3.13.0-2_s390x.deb ... 116s Unpacking python3.13-gdbm (3.13.0-2) ... 116s Preparing to unpack .../python3-gdbm_3.12.7-1_s390x.deb ... 116s Unpacking python3-gdbm:s390x (3.12.7-1) over (3.12.6-1ubuntu1) ... 116s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_s390x.deb ... 116s Unpacking libgpgme11t64:s390x (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 116s Setting up libgpgme11t64:s390x (1.23.2-5ubuntu4) ... 116s Setting up python3.13-gdbm (3.13.0-2) ... 116s Setting up libpython3-stdlib:s390x (3.12.7-1) ... 116s Setting up python3 (3.12.7-1) ... 117s Setting up python3-gdbm:s390x (3.12.7-1) ... 117s Processing triggers for man-db (2.12.1-3) ... 117s Processing triggers for libc-bin (2.40-1ubuntu3) ... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 118s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 118s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 119s Reading package lists... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [12:14:28]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 123s autopkgtest [12:14:28]: @@@@@@@@@@@@@@@@@@@@ apt-source pybigwig 124s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (dsc) [2328 B] 124s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (tar) [31.8 kB] 124s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (diff) [4860 B] 124s gpgv: Signature made Sun Nov 3 16:14:37 2024 UTC 124s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 124s gpgv: issuer "emollier@debian.org" 124s gpgv: Can't check signature: No public key 124s dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.23+dfsg-1.dsc: no acceptable signature found 124s autopkgtest [12:14:29]: testing package pybigwig version 0.3.23+dfsg-1 125s autopkgtest [12:14:30]: build not needed 125s autopkgtest [12:14:30]: test command1: preparing testbed 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Starting pkgProblemResolver with broken count: 0 127s Starting 2 pkgProblemResolver with broken count: 0 127s Done 127s The following additional packages will be installed: 127s libbigwig0t64 libblas3 libgfortran5 liblapack3 libpython3.13-minimal 127s libpython3.13-stdlib python3-all python3-numpy python3-pybigwig python3.13 127s python3.13-minimal 127s Suggested packages: 127s gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv 127s python3.13-doc binfmt-support 127s The following NEW packages will be installed: 127s autopkgtest-satdep libbigwig0t64 libblas3 libgfortran5 liblapack3 127s libpython3.13-minimal libpython3.13-stdlib python3-all python3-numpy 127s python3-pybigwig python3.13 python3.13-minimal 127s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 13.8 MB/13.8 MB of archives. 127s After this operation, 54.8 MB of additional disk space will be used. 127s Get:1 /tmp/autopkgtest.i9hHVm/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-minimal s390x 3.13.0-2 [877 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13-minimal s390x 3.13.0-2 [2172 kB] 129s Get:4 http://ftpmaster.internal/ubuntu plucky/universe s390x libbigwig0t64 s390x 0.4.7+dfsg-3.1build2 [32.7 kB] 129s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB] 129s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-8ubuntu1 [587 kB] 129s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB] 129s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpython3.13-stdlib s390x 3.13.0-2 [2086 kB] 129s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x python3.13 s390x 3.13.0-2 [719 kB] 129s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-all s390x 3.12.7-1 [890 B] 129s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB] 130s Get:12 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pybigwig s390x 0.3.23+dfsg-1 [42.7 kB] 130s Fetched 13.8 MB in 2s (5749 kB/s) 130s Selecting previously unselected package libpython3.13-minimal:s390x. 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55517 files and directories currently installed.) 130s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_s390x.deb ... 130s Unpacking libpython3.13-minimal:s390x (3.13.0-2) ... 130s Selecting previously unselected package python3.13-minimal. 130s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_s390x.deb ... 130s Unpacking python3.13-minimal (3.13.0-2) ... 130s Selecting previously unselected package libbigwig0t64:s390x. 130s Preparing to unpack .../02-libbigwig0t64_0.4.7+dfsg-3.1build2_s390x.deb ... 130s Unpacking libbigwig0t64:s390x (0.4.7+dfsg-3.1build2) ... 130s Selecting previously unselected package libblas3:s390x. 130s Preparing to unpack .../03-libblas3_3.12.0-3build2_s390x.deb ... 130s Unpacking libblas3:s390x (3.12.0-3build2) ... 130s Selecting previously unselected package libgfortran5:s390x. 130s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_s390x.deb ... 130s Unpacking libgfortran5:s390x (14.2.0-8ubuntu1) ... 130s Selecting previously unselected package liblapack3:s390x. 130s Preparing to unpack .../05-liblapack3_3.12.0-3build2_s390x.deb ... 130s Unpacking liblapack3:s390x (3.12.0-3build2) ... 130s Selecting previously unselected package libpython3.13-stdlib:s390x. 130s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_s390x.deb ... 130s Unpacking libpython3.13-stdlib:s390x (3.13.0-2) ... 130s Selecting previously unselected package python3.13. 130s Preparing to unpack .../07-python3.13_3.13.0-2_s390x.deb ... 130s Unpacking python3.13 (3.13.0-2) ... 130s Selecting previously unselected package python3-all. 130s Preparing to unpack .../08-python3-all_3.12.7-1_s390x.deb ... 130s Unpacking python3-all (3.12.7-1) ... 130s Selecting previously unselected package python3-numpy. 130s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ... 130s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 130s Selecting previously unselected package python3-pybigwig. 130s Preparing to unpack .../10-python3-pybigwig_0.3.23+dfsg-1_s390x.deb ... 130s Unpacking python3-pybigwig (0.3.23+dfsg-1) ... 130s Selecting previously unselected package autopkgtest-satdep. 130s Preparing to unpack .../11-1-autopkgtest-satdep.deb ... 130s Unpacking autopkgtest-satdep (0) ... 130s Setting up libpython3.13-minimal:s390x (3.13.0-2) ... 130s Setting up libblas3:s390x (3.12.0-3build2) ... 130s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 130s Setting up libgfortran5:s390x (14.2.0-8ubuntu1) ... 130s Setting up python3.13-minimal (3.13.0-2) ... 131s Setting up libbigwig0t64:s390x (0.4.7+dfsg-3.1build2) ... 131s Setting up libpython3.13-stdlib:s390x (3.13.0-2) ... 131s Setting up liblapack3:s390x (3.12.0-3build2) ... 131s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 131s Setting up python3.13 (3.13.0-2) ... 133s Setting up python3-all (3.12.7-1) ... 133s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 137s Setting up python3-pybigwig (0.3.23+dfsg-1) ... 137s Setting up autopkgtest-satdep (0) ... 137s Processing triggers for systemd (256.5-2ubuntu4) ... 137s Processing triggers for man-db (2.12.1-3) ... 138s Processing triggers for libc-bin (2.40-1ubuntu3) ... 139s (Reading database ... 57171 files and directories currently installed.) 139s Removing autopkgtest-satdep (0) ... 140s autopkgtest [12:14:45]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd pyBigWigTest ; $py test.py ; cd .. ; done 140s autopkgtest [12:14:45]: test command1: [----------------------- 140s Traceback (most recent call last): 140s File "/tmp/autopkgtest.i9hHVm/build.wda/src/pyBigWigTest/test.py", line 1, in 140s import pyBigWig 140s ModuleNotFoundError: No module named 'pyBigWig' 140s autopkgtest [12:14:45]: test command1: -----------------------] 141s autopkgtest [12:14:46]: test command1: - - - - - - - - - - results - - - - - - - - - - 141s command1 FAIL non-zero exit status 1 141s autopkgtest [12:14:46]: test command1: - - - - - - - - - - stderr - - - - - - - - - - 141s Traceback (most recent call last): 141s File "/tmp/autopkgtest.i9hHVm/build.wda/src/pyBigWigTest/test.py", line 1, in 141s import pyBigWig 141s ModuleNotFoundError: No module named 'pyBigWig' 141s autopkgtest [12:14:46]: @@@@@@@@@@@@@@@@@@@@ summary 141s command1 FAIL non-zero exit status 1 154s virt: nova [W] Using flock in prodstack6-s390x 154s virt: Creating nova instance adt-plucky-s390x-pybigwig-20241113-121224-juju-7f2275-prod-proposed-migration-environment-2-2a83c6cc-55d2-4179-ab2f-5c248c1fb7da from image adt/ubuntu-plucky-s390x-server-20241113.img (UUID e740277e-1f72-40ae-bfbe-46030537c71c)...