0s autopkgtest [16:49:03]: starting date and time: 2025-03-15 16:49:03+0000 0s autopkgtest [16:49:03]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:49:03]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.82csvqr3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pplacer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-12.secgroup --name adt-plucky-s390x-pplacer-20250315-164902-juju-7f2275-prod-proposed-migration-environment-20-ccea1f7c-f1c3-4bb1-abef-365554ccfdc9 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 149s autopkgtest [16:51:32]: testbed dpkg architecture: s390x 150s autopkgtest [16:51:33]: testbed apt version: 2.9.33 150s autopkgtest [16:51:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 150s autopkgtest [16:51:33]: testbed release detected to be: None 151s autopkgtest [16:51:34]: updating testbed package index (apt update) 151s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 151s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 152s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 152s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 152s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 152s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 152s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 152s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 152s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 152s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 152s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 153s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 153s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 153s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 153s Fetched 1073 kB in 2s (589 kB/s) 154s Reading package lists... 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Calculating upgrade... 154s Calculating upgrade... 154s The following packages were automatically installed and are no longer required: 154s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 154s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 154s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 154s linux-tools-6.11.0-8-generic 154s Use 'sudo apt autoremove' to remove them. 154s The following packages will be upgraded: 154s pinentry-curses python3-jinja2 strace 155s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 652 kB of archives. 155s After this operation, 27.6 kB of additional disk space will be used. 155s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 155s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 155s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 156s Fetched 652 kB in 1s (625 kB/s) 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 156s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 156s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 156s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 156s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 156s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 156s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 156s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 156s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 156s Setting up strace (6.13+ds-1ubuntu1) ... 156s Processing triggers for man-db (2.13.0-1) ... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Solving dependencies... 157s The following packages will be REMOVED: 157s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 157s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 157s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 157s linux-tools-6.11.0-8-generic* 157s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 157s After this operation, 167 MB disk space will be freed. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 157s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 157s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 157s Removing libpython3.12t64:s390x (3.12.9-1) ... 157s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 157s Removing libnsl2:s390x (1.3.0-3build3) ... 157s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 157s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 157s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 158s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 158s Processing triggers for libc-bin (2.41-1ubuntu1) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 158s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 158s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 158s autopkgtest [16:51:41]: upgrading testbed (apt dist-upgrade and autopurge) 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 159s Entering ResolveByKeep 159s 159s Calculating upgrade... 159s The following packages will be upgraded: 159s libc-bin libc-dev-bin libc6 libc6-dev locales 159s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 9512 kB of archives. 159s After this operation, 8192 B of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 162s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 162s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 165s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 166s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 171s Preconfiguring packages ... 171s Fetched 9512 kB in 12s (820 kB/s) 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 171s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 171s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 171s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 171s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Setting up libc6:s390x (2.41-1ubuntu2) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 171s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 171s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Setting up libc-bin (2.41-1ubuntu2) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 171s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 171s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 172s Setting up locales (2.41-1ubuntu2) ... 172s Generating locales (this might take a while)... 173s en_US.UTF-8... done 173s Generation complete. 173s Setting up libc-dev-bin (2.41-1ubuntu2) ... 173s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 173s Processing triggers for man-db (2.13.0-1) ... 173s Processing triggers for systemd (257.3-1ubuntu3) ... 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 175s Solving dependencies... 175s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 175s autopkgtest [16:51:58]: rebooting testbed after setup commands that affected boot 193s autopkgtest [16:52:16]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 196s autopkgtest [16:52:19]: @@@@@@@@@@@@@@@@@@@@ apt-source pplacer 200s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pplacer 1.1~alpha19-8build1 (dsc) [2570 B] 200s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pplacer 1.1~alpha19-8build1 (tar) [899 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pplacer 1.1~alpha19-8build1 (tar) [831 kB] 200s Get:4 http://ftpmaster.internal/ubuntu plucky/universe pplacer 1.1~alpha19-8build1 (diff) [30.5 kB] 200s gpgv: Signature made Tue Jul 30 07:00:04 2024 UTC 200s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 200s gpgv: Can't check signature: No public key 200s dpkg-source: warning: cannot verify inline signature for ./pplacer_1.1~alpha19-8build1.dsc: no acceptable signature found 200s autopkgtest [16:52:23]: testing package pplacer version 1.1~alpha19-8build1 201s autopkgtest [16:52:24]: build not needed 202s autopkgtest [16:52:25]: test run-unit-test: preparing testbed 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 202s The following NEW packages will be installed: 202s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 202s cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu debhelper debugedit dh-autoreconf 202s dh-ocaml dh-strip-nondeterminism dwz g++ g++-14 g++-14-s390x-linux-gnu 202s g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu 202s gettext intltool-debian libarchive-zip-perl libasan8 libbatteries-ocaml-dev 202s libcamlp-streams-ocaml libcamlp-streams-ocaml-dev libcc1-0 202s libcompiler-libs-ocaml-dev libconfig-tiny-perl libcsv-ocaml-dev 202s libdebhelper-perl libfile-stripnondeterminism-perl libfindlib-ocaml 202s libgcc-14-dev libgomp1 libgsl-dev libgsl28 libgslcblas0 libisl23 libitm1 202s libmcl14-ocaml-dev libmpc3 libncurses-dev libnum-ocaml libnum-ocaml-dev 202s libocamlgsl-ocaml libocamlgsl-ocaml-dev libounit-ocaml-dev libsqlite3-dev 202s libsqlite3-ocaml libsqlite3-ocaml-dev libstdc++-14-dev libstdlib-ocaml 202s libstdlib-ocaml-dev libtool libubsan1 libxmlm-ocaml-dev libzip-ocaml 202s libzip-ocaml-dev libzstd-dev m4 ocaml ocaml-base ocaml-findlib ocaml-interp 202s ocaml-nox ocamlbuild po-debconf pplacer zlib1g-dev 203s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 203s Need to get 169 MB of archives. 203s After this operation, 511 MB of additional disk space will be used. 203s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x m4 s390x 1.4.19-7 [259 kB] 203s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x autoconf all 2.72-3ubuntu1 [383 kB] 203s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x autotools-dev all 20220109.1 [44.9 kB] 204s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x automake all 1:1.17-3ubuntu1 [572 kB] 204s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x autopoint all 0.23.1-1 [619 kB] 205s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 205s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 206s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 216s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 216s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 216s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 216s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 216s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 216s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 216s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 219s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 221s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 222s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 242s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 242s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 242s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 242s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 245s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 257s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 257s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 257s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 257s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 257s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 257s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libtool all 2.5.4-4 [168 kB] 257s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x dh-autoreconf all 20 [16.1 kB] 257s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] 257s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 257s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x dh-strip-nondeterminism all 1.14.1-2 [5064 B] 257s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x debugedit s390x 1:5.1-2 [50.1 kB] 257s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x dwz s390x 0.15-1build6 [122 kB] 257s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gettext s390x 0.23.1-1 [1065 kB] 259s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] 259s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x po-debconf all 1.0.21+nmu1 [233 kB] 259s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x debhelper all 13.24.1ubuntu2 [895 kB] 260s Get:40 http://ftpmaster.internal/ubuntu plucky/universe s390x libstdlib-ocaml s390x 5.3.0-2 [438 kB] 260s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x ocaml-base s390x 5.3.0-2 [329 kB] 261s Get:42 http://ftpmaster.internal/ubuntu plucky/universe s390x libfindlib-ocaml s390x 1.9.8-1 [225 kB] 261s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x ocaml-findlib s390x 1.9.8-1 [679 kB] 262s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libcamlp-streams-ocaml s390x 5.0.1-3build5 [46.0 kB] 262s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x libstdlib-ocaml-dev s390x 5.3.0-2 [7845 kB] 271s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x libcompiler-libs-ocaml-dev s390x 5.3.0-2 [47.5 MB] 323s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x ocaml-interp s390x 5.3.0-2 [8368 kB] 332s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 332s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libzstd-dev s390x 1.5.6+dfsg-2 [408 kB] 333s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x ocaml s390x 5.3.0-2 [20.6 MB] 356s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x libcamlp-streams-ocaml-dev s390x 5.0.1-3build5 [126 kB] 356s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x libnum-ocaml s390x 1.5-1build3 [192 kB] 357s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x libnum-ocaml-dev s390x 1.5-1build3 [151 kB] 357s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x libbatteries-ocaml-dev s390x 3.9.0-1build1 [12.9 MB] 372s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libconfig-tiny-perl all 2.30-1 [14.7 kB] 372s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x libcsv-ocaml-dev s390x 2.4-3build3 [434 kB] 372s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x libgslcblas0 s390x 2.8+dfsg-5 [153 kB] 372s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x libgsl28 s390x 2.8+dfsg-5 [1126 kB] 374s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libgsl-dev s390x 2.8+dfsg-5 [1427 kB] 375s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x libmcl14-ocaml-dev s390x 14-137+ocaml-3build2 [256 kB] 375s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libocamlgsl-ocaml s390x 1.25.1-1build1 [582 kB] 376s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x libocamlgsl-ocaml-dev s390x 1.25.1-1build1 [1773 kB] 378s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x libounit-ocaml-dev s390x 2.2.7-2build4 [1408 kB] 380s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libsqlite3-dev s390x 3.46.1-2 [975 kB] 381s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x libxmlm-ocaml-dev s390x 1.4.0-1build3 [594 kB] 382s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x libzip-ocaml s390x 1.13-1build1 [109 kB] 382s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 383s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libzip-ocaml-dev s390x 1.13-1build1 [258 kB] 383s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x ocaml-nox all 5.3.0-2 [5070 B] 383s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x ocamlbuild s390x 0.16.1-1 [1274 kB] 384s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x pplacer s390x 1.1~alpha19-8build1 [3493 kB] 388s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x dh-ocaml all 2.4 [63.6 kB] 388s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libsqlite3-ocaml s390x 5.3.1-1 [76.8 kB] 388s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x libsqlite3-ocaml-dev s390x 5.3.1-1 [174 kB] 389s Fetched 169 MB in 3min 6s (907 kB/s) 389s Selecting previously unselected package m4. 389s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 389s Preparing to unpack .../00-m4_1.4.19-7_s390x.deb ... 389s Unpacking m4 (1.4.19-7) ... 389s Selecting previously unselected package autoconf. 389s Preparing to unpack .../01-autoconf_2.72-3ubuntu1_all.deb ... 389s Unpacking autoconf (2.72-3ubuntu1) ... 389s Selecting previously unselected package autotools-dev. 389s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ... 389s Unpacking autotools-dev (20220109.1) ... 389s Selecting previously unselected package automake. 389s Preparing to unpack .../03-automake_1%3a1.17-3ubuntu1_all.deb ... 389s Unpacking automake (1:1.17-3ubuntu1) ... 389s Selecting previously unselected package autopoint. 389s Preparing to unpack .../04-autopoint_0.23.1-1_all.deb ... 389s Unpacking autopoint (0.23.1-1) ... 389s Selecting previously unselected package libisl23:s390x. 389s Preparing to unpack .../05-libisl23_0.27-1_s390x.deb ... 389s Unpacking libisl23:s390x (0.27-1) ... 389s Selecting previously unselected package libmpc3:s390x. 389s Preparing to unpack .../06-libmpc3_1.3.1-1build2_s390x.deb ... 389s Unpacking libmpc3:s390x (1.3.1-1build2) ... 389s Selecting previously unselected package cpp-14-s390x-linux-gnu. 389s Preparing to unpack .../07-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 389s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 389s Selecting previously unselected package cpp-14. 389s Preparing to unpack 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Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 389s Selecting previously unselected package libasan8:s390x. 389s Preparing to unpack .../14-libasan8_15-20250222-0ubuntu1_s390x.deb ... 389s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 389s Selecting previously unselected package libubsan1:s390x. 389s Preparing to unpack .../15-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 389s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 389s Selecting previously unselected package libgcc-14-dev:s390x. 389s Preparing to unpack .../16-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 389s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 389s Selecting previously unselected package gcc-14-s390x-linux-gnu. 389s Preparing to unpack .../17-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 389s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 390s Selecting previously unselected package gcc-14. 390s Preparing to unpack .../18-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 390s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 390s Selecting previously unselected package gcc-s390x-linux-gnu. 390s Preparing to unpack .../19-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 390s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 390s Selecting previously unselected package gcc. 390s Preparing to unpack .../20-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 390s Unpacking gcc (4:14.2.0-1ubuntu1) ... 390s Selecting previously unselected package libstdc++-14-dev:s390x. 390s Preparing to unpack .../21-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 390s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 390s Selecting previously unselected package g++-14-s390x-linux-gnu. 390s Preparing to unpack .../22-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 390s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 390s Selecting previously unselected package g++-14. 390s Preparing to unpack .../23-g++-14_14.2.0-17ubuntu3_s390x.deb ... 390s Unpacking g++-14 (14.2.0-17ubuntu3) ... 390s Selecting previously unselected package g++-s390x-linux-gnu. 390s Preparing to unpack .../24-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 390s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 390s Selecting previously unselected package g++. 390s Preparing to unpack .../25-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 390s Unpacking g++ (4:14.2.0-1ubuntu1) ... 390s Selecting previously unselected package build-essential. 390s Preparing to unpack .../26-build-essential_12.10ubuntu1_s390x.deb ... 390s Unpacking build-essential (12.10ubuntu1) ... 390s Selecting previously unselected package libdebhelper-perl. 390s Preparing to unpack .../27-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 390s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 390s Selecting previously unselected package libtool. 390s Preparing to unpack .../28-libtool_2.5.4-4_all.deb ... 390s Unpacking libtool (2.5.4-4) ... 390s Selecting previously unselected package dh-autoreconf. 390s Preparing to unpack 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390s Selecting previously unselected package gettext. 390s Preparing to unpack .../35-gettext_0.23.1-1_s390x.deb ... 390s Unpacking gettext (0.23.1-1) ... 390s Selecting previously unselected package intltool-debian. 390s Preparing to unpack .../36-intltool-debian_0.35.0+20060710.6_all.deb ... 390s Unpacking intltool-debian (0.35.0+20060710.6) ... 390s Selecting previously unselected package po-debconf. 390s Preparing to unpack .../37-po-debconf_1.0.21+nmu1_all.deb ... 390s Unpacking po-debconf (1.0.21+nmu1) ... 390s Selecting previously unselected package debhelper. 390s Preparing to unpack .../38-debhelper_13.24.1ubuntu2_all.deb ... 390s Unpacking debhelper (13.24.1ubuntu2) ... 390s Selecting previously unselected package libstdlib-ocaml. 390s Preparing to unpack .../39-libstdlib-ocaml_5.3.0-2_s390x.deb ... 390s Unpacking libstdlib-ocaml (5.3.0-2) ... 390s Selecting previously unselected package ocaml-base. 390s Preparing to unpack .../40-ocaml-base_5.3.0-2_s390x.deb ... 390s 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unpack .../51-libnum-ocaml_1.5-1build3_s390x.deb ... 391s Unpacking libnum-ocaml (1.5-1build3) ... 391s Selecting previously unselected package libnum-ocaml-dev. 391s Preparing to unpack .../52-libnum-ocaml-dev_1.5-1build3_s390x.deb ... 391s Unpacking libnum-ocaml-dev (1.5-1build3) ... 391s Selecting previously unselected package libbatteries-ocaml-dev. 391s Preparing to unpack .../53-libbatteries-ocaml-dev_3.9.0-1build1_s390x.deb ... 391s Unpacking libbatteries-ocaml-dev (3.9.0-1build1) ... 391s Selecting previously unselected package libconfig-tiny-perl. 391s Preparing to unpack .../54-libconfig-tiny-perl_2.30-1_all.deb ... 391s Unpacking libconfig-tiny-perl (2.30-1) ... 391s Selecting previously unselected package libcsv-ocaml-dev. 391s Preparing to unpack .../55-libcsv-ocaml-dev_2.4-3build3_s390x.deb ... 391s Unpacking libcsv-ocaml-dev (2.4-3build3) ... 391s Selecting previously unselected package libgslcblas0:s390x. 391s Preparing to unpack .../56-libgslcblas0_2.8+dfsg-5_s390x.deb 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(1.25.1-1build1) ... 392s Selecting previously unselected package libounit-ocaml-dev. 392s Preparing to unpack .../62-libounit-ocaml-dev_2.2.7-2build4_s390x.deb ... 392s Unpacking libounit-ocaml-dev (2.2.7-2build4) ... 392s Selecting previously unselected package libsqlite3-dev:s390x. 392s Preparing to unpack .../63-libsqlite3-dev_3.46.1-2_s390x.deb ... 392s Unpacking libsqlite3-dev:s390x (3.46.1-2) ... 392s Selecting previously unselected package libxmlm-ocaml-dev. 392s Preparing to unpack .../64-libxmlm-ocaml-dev_1.4.0-1build3_s390x.deb ... 392s Unpacking libxmlm-ocaml-dev (1.4.0-1build3) ... 392s Selecting previously unselected package libzip-ocaml. 392s Preparing to unpack .../65-libzip-ocaml_1.13-1build1_s390x.deb ... 392s Unpacking libzip-ocaml (1.13-1build1) ... 392s Selecting previously unselected package zlib1g-dev:s390x. 392s Preparing to unpack .../66-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 392s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 392s Selecting previously unselected package libzip-ocaml-dev. 392s Preparing to unpack .../67-libzip-ocaml-dev_1.13-1build1_s390x.deb ... 392s Unpacking libzip-ocaml-dev (1.13-1build1) ... 392s Selecting previously unselected package ocaml-nox. 392s Preparing to unpack .../68-ocaml-nox_5.3.0-2_all.deb ... 392s Unpacking ocaml-nox (5.3.0-2) ... 392s Selecting previously unselected package ocamlbuild. 392s Preparing to unpack .../69-ocamlbuild_0.16.1-1_s390x.deb ... 392s Unpacking ocamlbuild (0.16.1-1) ... 392s Selecting previously unselected package pplacer. 392s Preparing to unpack .../70-pplacer_1.1~alpha19-8build1_s390x.deb ... 392s Unpacking pplacer (1.1~alpha19-8build1) ... 392s Selecting previously unselected package dh-ocaml. 392s Preparing to unpack .../71-dh-ocaml_2.4_all.deb ... 392s Unpacking dh-ocaml (2.4) ... 392s Selecting previously unselected package libsqlite3-ocaml. 392s Preparing to unpack .../72-libsqlite3-ocaml_5.3.1-1_s390x.deb ... 392s Unpacking libsqlite3-ocaml (5.3.1-1) ... 392s Selecting previously unselected package libsqlite3-ocaml-dev. 392s Preparing to unpack .../73-libsqlite3-ocaml-dev_5.3.1-1_s390x.deb ... 392s Unpacking libsqlite3-ocaml-dev (5.3.1-1) ... 392s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 392s Setting up libzstd-dev:s390x (1.5.6+dfsg-2) ... 392s Setting up libgslcblas0:s390x (2.8+dfsg-5) ... 392s Setting up libarchive-zip-perl (1.68-1) ... 392s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 392s Setting up m4 (1.4.19-7) ... 392s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 392s Setting up libconfig-tiny-perl (2.30-1) ... 392s Setting up autotools-dev (20220109.1) ... 392s Setting up libsqlite3-dev:s390x (3.46.1-2) ... 392s Setting up libstdlib-ocaml (5.3.0-2) ... 392s Setting up libmpc3:s390x (1.3.1-1build2) ... 392s Setting up autopoint (0.23.1-1) ... 392s Setting up ocaml-base (5.3.0-2) ... 392s Setting up autoconf (2.72-3ubuntu1) ... 392s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 392s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 392s Setting up libnum-ocaml (1.5-1build3) ... 392s Setting up dwz (0.15-1build6) ... 392s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 392s Setting up debugedit (1:5.1-2) ... 392s Setting up libsqlite3-ocaml (5.3.1-1) ... 392s Setting up libisl23:s390x (0.27-1) ... 392s Setting up libgsl28:s390x (2.8+dfsg-5) ... 392s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 392s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 392s Setting up automake (1:1.17-3ubuntu1) ... 392s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 392s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 392s Setting up gettext (0.23.1-1) ... 392s Setting up libgsl-dev (2.8+dfsg-5) ... 392s Setting up libstdlib-ocaml-dev (5.3.0-2) ... 392s Setting up libcamlp-streams-ocaml (5.0.1-3build5) ... 392s Setting up dh-ocaml (2.4) ... 392s Setting up pplacer (1.1~alpha19-8build1) ... 392s Setting up libfindlib-ocaml (1.9.8-1) ... 392s Setting up libocamlgsl-ocaml (1.25.1-1build1) ... 392s Setting up intltool-debian (0.35.0+20060710.6) ... 392s Setting up libcompiler-libs-ocaml-dev (5.3.0-2) ... 392s Setting up ocaml-interp (5.3.0-2) ... 392s Setting up libzip-ocaml (1.13-1build1) ... 392s Setting up ocaml-findlib (1.9.8-1) ... 392s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 392s Setting up cpp-14 (14.2.0-17ubuntu3) ... 392s Setting up dh-strip-nondeterminism (1.14.1-2) ... 392s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 392s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 392s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 392s Setting up po-debconf (1.0.21+nmu1) ... 392s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 392s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 392s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 392s Setting up cpp (4:14.2.0-1ubuntu1) ... 392s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 392s Setting up gcc-14 (14.2.0-17ubuntu3) ... 392s Setting up g++-14 (14.2.0-17ubuntu3) ... 392s Setting up libtool (2.5.4-4) ... 392s Setting up gcc (4:14.2.0-1ubuntu1) ... 392s Setting up dh-autoreconf (20) ... 392s Setting up g++ (4:14.2.0-1ubuntu1) ... 392s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 392s Setting up build-essential (12.10ubuntu1) ... 392s Setting up debhelper (13.24.1ubuntu2) ... 392s Setting up ocaml (5.3.0-2) ... 392s Setting up libmcl14-ocaml-dev (14-137+ocaml-3build2) ... 392s Setting up libsqlite3-ocaml-dev (5.3.1-1) ... 392s Setting up libcsv-ocaml-dev (2.4-3build3) ... 392s Setting up libcamlp-streams-ocaml-dev (5.0.1-3build5) ... 392s Setting up libzip-ocaml-dev (1.13-1build1) ... 392s Setting up ocaml-nox (5.3.0-2) ... 392s Setting up libxmlm-ocaml-dev (1.4.0-1build3) ... 392s Setting up libnum-ocaml-dev (1.5-1build3) ... 392s Setting up libocamlgsl-ocaml-dev (1.25.1-1build1) ... 392s Setting up libounit-ocaml-dev (2.2.7-2build4) ... 392s Setting up ocamlbuild (0.16.1-1) ... 392s Setting up libbatteries-ocaml-dev (3.9.0-1build1) ... 392s Processing triggers for man-db (2.13.0-1) ... 393s Processing triggers for install-info (7.1.1-1) ... 393s Processing triggers for libc-bin (2.41-1ubuntu2) ... 394s autopkgtest [16:55:37]: test run-unit-test: [----------------------- 394s + pkg=pplacer 394s ++ pwd 394s + CUR_DIR=/tmp/autopkgtest.PniPVW/build.a0G/src 394s + export LC_ALL=C.UTF-8 394s + LC_ALL=C.UTF-8 394s + '[' /tmp/autopkgtest.PniPVW/autopkgtest_tmp = '' ']' 394s + cp /tmp/autopkgtest.PniPVW/build.a0G/src/debian-tests-data/src /tmp/autopkgtest.PniPVW/build.a0G/src/debian-tests-data/vaginal_16s.refpkg -a /tmp/autopkgtest.PniPVW/autopkgtest_tmp 394s + cd /tmp/autopkgtest.PniPVW/autopkgtest_tmp 394s + echo '127b8f054fc0e2cade75c7922f06e919 p4z1r36.xml' 394s + echo 'eb8193d86364a6c5687199f4cd1b2caf dist_matrix' 394s + echo '0e738fe4fccf66d29c349af393393e8b cluster.tre' 394s + echo 'e7ccd9be33592127b60649b122d017fe pca_out.xml' 394s + echo -e '\e[93m\e[1mRunning Tests\e[0m' 394s + pplacer -c vaginal_16s.refpkg src/p4z1r36.fasta 394s Running Tests 394s Running pplacer unknown analysis on src/p4z1r36.fasta... 394s Found reference sequences in given alignment file. Using those for reference alignment. 395s Pre-masking sequences... sequence length cut from 2196 to 275. 395s Determining figs... figs disabled. 395s Allocating memory for internal nodes... done. 395s Caching likelihood information on reference tree... done. 395s Pulling exponents... done. 395s Preparing the edges for baseball... done. 395s warning: rank below_species not represented in the lineage of any sequence in reference package vaginal_16s. 395s working on GLKT0ZE01DZFDT (1/212)... 395s working on GLKT0ZE01EIMV5 (2/212)... 395s working on GLKT0ZE01ATVQ5 (3/212)... 395s working on GLKT0ZE01CEYOR (4/212)... 395s working on GLKT0ZE01DLFJM (5/212)... 395s working on GLKT0ZE01AS8PD (6/212)... 395s working on GLKT0ZE01E1RNV (7/212)... 396s working on GLKT0ZE01EDZ58 (8/212)... 396s working on GLKT0ZE01DAM0C (9/212)... 396s working on GLKT0ZE01BS4VF (10/212)... 396s working on GLKT0ZE01EGI05 (11/212)... 396s working on GLKT0ZE01ELHHI (12/212)... 396s working on GLKT0ZE01AU1KG (13/212)... 396s working on GLKT0ZE01AL6AC (14/212)... 396s working on GLKT0ZE01DXVCC (15/212)... 396s working on GLKT0ZE01DYUY5 (16/212)... 396s working on GLKT0ZE01AX9HR (17/212)... 396s working on GLKT0ZE01CZQBN (18/212)... 396s working on GLKT0ZE01EK5PB (19/212)... 396s working on GLKT0ZE01EQDEJ (20/212)... 396s working on GLKT0ZE01D3LCY (21/212)... 396s working on GLKT0ZE01EG9Q0 (22/212)... 396s working on GLKT0ZE01EE8L3 (23/212)... 396s working on GLKT0ZE01AKG5U (24/212)... 396s working on GLKT0ZE01D7KOO (25/212)... 396s working on GLKT0ZE01EJGM2 (26/212)... 396s working on GLKT0ZE01EYIDO (27/212)... 396s working on GLKT0ZE01BP3DJ (28/212)... 396s working on GLKT0ZE01DNODO (29/212)... 396s working on GLKT0ZE01C4L0G (30/212)... 396s working on GLKT0ZE01BY974 (31/212)... 396s working on GLKT0ZE01CQ1P1 (32/212)... 396s working on GLKT0ZE01B2ZS0 (33/212)... 396s working on GLKT0ZE01EES4M (34/212)... 396s working on GLKT0ZE01C33NK (35/212)... 396s working on GLKT0ZE01CLHW0 (36/212)... 396s working on GLKT0ZE01EQKF0 (37/212)... 396s working on GLKT0ZE01EFLSY (38/212)... 396s working on GLKT0ZE01AGFB3 (39/212)... 396s working on GLKT0ZE01EZG2N (40/212)... 396s working on GLKT0ZE01EN689 (41/212)... 396s working on GLKT0ZE01D58OX (42/212)... 396s working on GLKT0ZE01ARM1Q (43/212)... 396s working on GLKT0ZE01CYR6H (44/212)... 396s working on GLKT0ZE01CN3X8 (45/212)... 396s working on GLKT0ZE01DQZQP (46/212)... 396s working on GLKT0ZE01A608I (47/212)... 396s working on GLKT0ZE01ARM22 (48/212)... 396s working on GLKT0ZE01D3HGG (49/212)... 396s working on GLKT0ZE01DAUNZ (50/212)... 396s working on GLKT0ZE01B5L2R (51/212)... 396s working on GLKT0ZE01CKBV6 (52/212)... 397s working on GLKT0ZE01AUUNG (53/212)... 397s working on GLKT0ZE01ATBL2 (54/212)... 397s working on GLKT0ZE01EIZGC (55/212)... 397s working on GLKT0ZE01D0ZE3 (56/212)... 397s working on GLKT0ZE01AEF0Y (57/212)... 397s working on GLKT0ZE01EPC94 (58/212)... 397s working on GLKT0ZE01AS2W8 (59/212)... 397s working on GLKT0ZE01BPUL0 (60/212)... 397s working on GLKT0ZE01B8VX0 (61/212)... 397s working on GLKT0ZE01BLMU1 (62/212)... 397s working on GLKT0ZE01CJK9E (63/212)... 397s working on GLKT0ZE01EMGXD (64/212)... 397s working on GLKT0ZE01AV7ZO (65/212)... 397s working on GLKT0ZE01CEYOL (66/212)... 397s working on GLKT0ZE01CXL98 (67/212)... 397s working on GLKT0ZE01D12TB (68/212)... 397s working on GLKT0ZE01D4YE4 (69/212)... 397s working on GLKT0ZE01APSJM (70/212)... 397s working on GLKT0ZE01B789O (71/212)... 397s working on GLKT0ZE01DXJ4E (72/212)... 397s working on GLKT0ZE01C28AQ (73/212)... 397s working on GLKT0ZE01BAKMX (74/212)... 397s working on GLKT0ZE01AUSPA (75/212)... 397s working on GLKT0ZE01EF1BE (76/212)... 397s working on GLKT0ZE01CXZQF (77/212)... 397s working on GLKT0ZE01EOJJW (78/212)... 397s working on GLKT0ZE01B8WZE (79/212)... 397s working on GLKT0ZE01ECACO (80/212)... 397s working on GLKT0ZE01C63T7 (81/212)... 397s working on GLKT0ZE01CB2JD (82/212)... 397s working on GLKT0ZE01BJ7UL (83/212)... 397s working on GLKT0ZE01BNFK5 (84/212)... 397s working on GLKT0ZE01DITVB (85/212)... 397s working on GLKT0ZE01DHLVC (86/212)... 397s working on GLKT0ZE01BDIJG (87/212)... 397s working on GLKT0ZE01DXGE3 (88/212)... 397s working on GLKT0ZE01B2H58 (89/212)... 397s working on GLKT0ZE01BWMRF (90/212)... 397s working on GLKT0ZE01C2GFZ (91/212)... 397s working on GLKT0ZE01DDVX3 (92/212)... 397s working on GLKT0ZE01AVXRX (93/212)... 397s working on GLKT0ZE01A9IKV (94/212)... 397s working on GLKT0ZE01CW63P (95/212)... 397s working on GLKT0ZE01EU82H (96/212)... 397s working on GLKT0ZE01B2FCK (97/212)... 397s working on GLKT0ZE01CECUP (98/212)... 398s working on GLKT0ZE01BFVKE (99/212)... 398s working on GLKT0ZE01EZG5Z (100/212)... 398s working on GLKT0ZE01A13JJ (101/212)... 398s working on GLKT0ZE01E083P (102/212)... 398s working on GLKT0ZE01EY8J7 (103/212)... 398s working on GLKT0ZE01C2BPM (104/212)... 398s working on GLKT0ZE01EJ1I3 (105/212)... 398s working on GLKT0ZE01A87QM (106/212)... 398s working on GLKT0ZE01EG84C (107/212)... 398s working on GLKT0ZE01AZ6RN (108/212)... 398s working on GLKT0ZE01ECJ6B (109/212)... 398s working on GLKT0ZE01ENDJA (110/212)... 398s working on GLKT0ZE01CBJD5 (111/212)... 398s working on GLKT0ZE01EJ9YT (112/212)... 398s working on GLKT0ZE01BJGI3 (113/212)... 398s working on GLKT0ZE01AGL8Y (114/212)... 398s working on GLKT0ZE01DKSM5 (115/212)... 398s working on GLKT0ZE01BYE99 (116/212)... 398s working on GLKT0ZE01A92UB (117/212)... 398s working on GLKT0ZE01DMKFU (118/212)... 398s working on GLKT0ZE01DNHQM (119/212)... 398s working on GLKT0ZE01DU42T (120/212)... 398s working on GLKT0ZE01BUB3W (121/212)... 398s working on GLKT0ZE01EGO3C (122/212)... 398s working on GLKT0ZE01BRJ4O (123/212)... 398s working on GLKT0ZE01C3G7F (124/212)... 398s working on GLKT0ZE01C36CH (125/212)... 398s working on GLKT0ZE01B9MS2 (126/212)... 398s working on GLKT0ZE01DML81 (127/212)... 398s working on GLKT0ZE01COALJ (128/212)... 398s working on GLKT0ZE01CSXPD (129/212)... 398s working on GLKT0ZE01D8R2U (130/212)... 398s working on GLKT0ZE01BANG6 (131/212)... 398s working on GLKT0ZE01AX3LQ (132/212)... 398s working on GLKT0ZE01CXTHN (133/212)... 398s working on GLKT0ZE01BOYL6 (134/212)... 398s working on GLKT0ZE01ED53F (135/212)... 398s working on GLKT0ZE01A9VOG (136/212)... 398s working on GLKT0ZE01BKGMA (137/212)... 398s working on GLKT0ZE01E0K7O (138/212)... 398s working on GLKT0ZE01AMO86 (139/212)... 398s working on GLKT0ZE01ET5YH (140/212)... 398s working on GLKT0ZE01CUQ8G (141/212)... 398s working on GLKT0ZE01CSSCS (142/212)... 398s working on GLKT0ZE01DBG23 (143/212)... 398s working on GLKT0ZE01EFP50 (144/212)... 398s working on GLKT0ZE01B23TV (145/212)... 399s working on GLKT0ZE01B3KKQ (146/212)... 399s working on GLKT0ZE01CS7I4 (147/212)... 399s working on GLKT0ZE01A9IMV (148/212)... 399s working on GLKT0ZE01CLTFB (149/212)... 399s working on GLKT0ZE01B6I8F (150/212)... 399s working on GLKT0ZE01D5CZ5 (151/212)... 399s working on GLKT0ZE01EF2DE (152/212)... 399s working on GLKT0ZE01CBJOD (153/212)... 399s working on GLKT0ZE01BXN7I (154/212)... 399s working on GLKT0ZE01BVEWT (155/212)... 399s working on GLKT0ZE01COOCN (156/212)... 399s working on GLKT0ZE01CUPRI (157/212)... 399s working on GLKT0ZE01AK8PQ (158/212)... 399s working on GLKT0ZE01DZHOR (159/212)... 399s working on GLKT0ZE01BS9GM (160/212)... 399s working on GLKT0ZE01CQ2DL (161/212)... 399s working on GLKT0ZE01B5K4C (162/212)... 399s working on GLKT0ZE01A65J9 (163/212)... 399s working on GLKT0ZE01BHX0D (164/212)... 399s working on GLKT0ZE01DJQXZ (165/212)... 399s working on GLKT0ZE01DA6MU (166/212)... 399s working on GLKT0ZE01BXY59 (167/212)... 399s working on GLKT0ZE01AHEQK (168/212)... 399s working on GLKT0ZE01EVWLH (169/212)... 399s working on GLKT0ZE01EKYQ4 (170/212)... 399s working on GLKT0ZE01DADPG (171/212)... 399s working on GLKT0ZE01CSORJ (172/212)... 399s working on GLKT0ZE01BG97B (173/212)... 399s working on GLKT0ZE01AL0SO (174/212)... 399s working on GLKT0ZE01AW1LF (175/212)... 399s working on GLKT0ZE01CQ2BU (176/212)... 399s working on GLKT0ZE01DBU91 (177/212)... 399s working on GLKT0ZE01BBYT4 (178/212)... 399s working on GLKT0ZE01A8VM4 (179/212)... 399s working on GLKT0ZE01A9UIV (180/212)... 399s working on GLKT0ZE01B8IG6 (181/212)... 399s working on GLKT0ZE01D3NC2 (182/212)... 399s working on GLKT0ZE01DNKTR (183/212)... 399s working on GLKT0ZE01CB9YM (184/212)... 399s working on GLKT0ZE01BOZYD (185/212)... 399s working on GLKT0ZE01AFVBE (186/212)... 399s working on GLKT0ZE01BTQAX (187/212)... 399s working on GLKT0ZE01B59MR (188/212)... 399s working on GLKT0ZE01DNNGY (189/212)... 399s working on GLKT0ZE01E2TLD (190/212)... 399s working on GLKT0ZE01BE9C7 (191/212)... 400s working on GLKT0ZE01BF6FS (192/212)... 400s working on GLKT0ZE01ER0OO (193/212)... 400s working on GLKT0ZE01EAN2C (194/212)... 400s working on GLKT0ZE01CNZ2Y (195/212)... 400s working on GLKT0ZE01BSK9I (196/212)... 400s working on GLKT0ZE01DRYBY (197/212)... 400s working on GLKT0ZE01CIMVH (198/212)... 400s working on GLKT0ZE01AF3RT (199/212)... 400s working on GLKT0ZE01CA5AD (200/212)... 400s working on GLKT0ZE01AH4NR (201/212)... 400s working on GLKT0ZE01B15J7 (202/212)... 400s working on GLKT0ZE01BIMRP (203/212)... 400s working on GLKT0ZE01A81HE (204/212)... 400s working on GLKT0ZE01BCKGE (205/212)... 400s working on GLKT0ZE01B2O9X (206/212)... 400s working on GLKT0ZE01BCM0A (207/212)... 400s working on GLKT0ZE01AJGKG (208/212)... 400s working on GLKT0ZE01CKNWC (209/212)... 400s working on GLKT0ZE01D9X60 (210/212)... 400s working on GLKT0ZE01BXJRD (211/212)... 400s working on GLKT0ZE01DUJZC (212/212)... 400s + guppy fat -c vaginal_16s.refpkg p4z1r36.jplace 400s + guppy kr src/p1z1r2.jplace src/p1z1r34.jplace src/p1z2r19.jplace src/p4z1r2.jplace src/p4z2r22.jplace 400s + guppy epca --prefix pca_out -c vaginal_16s.refpkg src/p1z1r2.jplace src/p1z1r34.jplace src/p1z2r19.jplace src/p4z1r2.jplace src/p4z2r22.jplace 401s + guppy squash -c vaginal_16s.refpkg --out-dir . src/p1z1r2.jplace src/p1z1r34.jplace src/p1z2r19.jplace src/p4z1r2.jplace src/p4z2r22.jplace 401s Preparing the objects to be clustered...done. 401s step 1 of 5 401s step 2 of 5 401s step 3 of 5 401s step 4 of 5 401s step 5 of 5 401s Warning: taxonomic squash tree skipped because some placements missing taxonomic information. 401s ++ uname -m 401s + '[' s390x = x86_64 ']' 401s + file p4z1r36.xml 401s + grep 'XML 1.0 document' 401s p4z1r36.xml: XML 1.0 document, ASCII text, with very long lines (65497) 401s + file pca_out.xml 401s + grep 'XML 1.0 document' 401s pca_out.xml: XML 1.0 document, ASCII text, with very long lines (65497) 401s ++ du p4z1r36.xml 401s ++ cut -f1 401s + readonly p4z1r36_size=176 401s + p4z1r36_size=176 401s ++ du pca_out.xml 401s ++ cut -f1 401s PASS 401s + readonly pca_out_size=588 401s + pca_out_size=588 401s + test 176 -ge 168 401s + test 176 -le 184 401s + test 588 -ge 580 401s + test 588 -le 596 401s + echo -e '\e[92m\e[1mPASS\e[0m' 401s autopkgtest [16:55:44]: test run-unit-test: -----------------------] 402s run-unit-test PASS 402s autopkgtest [16:55:45]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 402s autopkgtest [16:55:45]: @@@@@@@@@@@@@@@@@@@@ summary 402s run-unit-test PASS 419s nova [W] Using flock in prodstack6-s390x 419s flock: timeout while waiting to get lock 419s Creating nova instance adt-plucky-s390x-pplacer-20250315-164902-juju-7f2275-prod-proposed-migration-environment-20-ccea1f7c-f1c3-4bb1-abef-365554ccfdc9 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 419s nova [W] Timed out waiting for 2f85f0d1-8dd5-480f-b501-c752b3e0c1af to get deleted.